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Add tutorial for 10X Visium dataset? #41

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EddieLv opened this issue May 25, 2024 · 1 comment
Open

Add tutorial for 10X Visium dataset? #41

EddieLv opened this issue May 25, 2024 · 1 comment
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@EddieLv
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EddieLv commented May 25, 2024

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What a wonderful tool for spatial data!
Sadly I met a series of errors when using cc.pl.plot_boundaries, and I noticed that you are updating 'plot_boundaries()', I am curious about when can you upload the next version?
Best wishes!

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@EddieLv EddieLv added the bug Something isn't working label May 25, 2024
@marcovarrone
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Hi @EddieLv, I uploaded the new version of CellCharter (v.0.2.1).
The plot_boundaries function should work now, even though the cells that do not belong to any component will appear with a random color.

As soon as spatialdata-plot releases the next version with my proposed fix, those cells will appear in gray as expected.

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@marcovarrone @EddieLv