mkdocs.yml

site_name: 'Innovation Summit 2023'
site_description: 'Documentation for May 2023 ESIIL Innovation Summit'
site_author: 'ESIIL Education and CI'
site_url: https://cu-esiil.github.io/pre-innovation-summit-training

# Repository
repo_name: pre-innovation-summit-training
repo_url: https://github.com/cu-esiil/pre-innovation-summit-training
edit_uri: edit/main/docs/
# Copyright
copyright: 'Copyright © 2023 University of Colorado Boulder'

# Page tree
nav:
  - Home: index.md
  - Collaboration on Cloud: 
    - Collaboration on Cloud: 1_Collaboration_on_Cloud/collaboration.md
    - Github essentials: 1_Collaboration_on_Cloud/github_lesson/github_lesson.md
    - Jetstream2 Intro: 1_Collaboration_on_Cloud/jetstream2_lesson/jetstream2_lesson.md 
  - R and Python Bilingualism:
    - Overview: 2_R_and_Py_bilingualism/code/outline/outline.md
    - Code examples: 2_R_and_Py_bilingualism/code/code_demo/bilingualism.md
  - Reproducible and Open Science:
    - Tools for Reproducible and Open Science: 3_Tools_for_reproducible_and_open_science/openscience.md

# Configuration
imgwidth: 70px;
theme:
  nav_depth: 3 
  highlightjs: true
  name: material
  font:
    text: 'Open Sans'
    code: 'Roboto Mono'
  logo: 'assets/ESIIL_logo.png'
  favicon: 'assets/favicon.ico'
# setting features for the navigation tab
  features:
    - navigation.instant
    - navigation.tracking
    - navigation.tabs
    - navigation.tabs.sticky
    - navigation.indexes
    - navigation.top
    - toc.integrate
    - toc.follow
    - content.code.copy
  # Default values, taken from mkdocs_theme.yml
  language: en
  # custom_dir: 'overrides'
  palette:
    # Palette toggle for light mode
    - media: "(prefers-color-scheme: white)"
      primary: 'white'
      toggle:
        icon: material/weather-night
        name: Switch to dark mode

    # Palette toggle for dark mode
    - media: "(prefers-color-scheme: dark)"
      scheme: slate
      toggle:
        icon: material/weather-sunny
        name: Switch to system preference

# Options
extra:
  social:
#    - icon: fontawesome/brands/orcid
#      link: 
    - icon: fontawesome/brands/github
      link: https://github.com/cu-esiil/
#    - icon: fontawesome/brands/mastodon
#      link: 
#    - icon: fontawesome/brands/twitter
#      link: 
#    - icon: fontawesome/brands/linkedin
#      link: 
#    - icon: fontawesome/brands/youtube
#      link: 
#  analytics:
#    provider: google
#    property: G-NYETZFD8DN
  
# Extensions
markdown_extensions:
  - admonition
  - abbr
  - attr_list
  - def_list
  - footnotes
  - meta
  - md_in_html
  - toc:
      permalink: true
  - pymdownx.arithmatex:
      generic: true
  - pymdownx.betterem:
      smart_enable: all
  - pymdownx.caret
  - pymdownx.critic
  - pymdownx.details
  - pymdownx.emoji:
      emoji_index: !!python/name:materialx.emoji.twemoji
      emoji_generator: !!python/name:materialx.emoji.to_svg
  - pymdownx.highlight
  - pymdownx.inlinehilite
  - pymdownx.keys
  - pymdownx.magiclink:
      repo_url_shorthand: true
      user: squidfunk
      repo: mkdocs-material
  - pymdownx.mark
  - pymdownx.smartsymbols
  - pymdownx.superfences:
      custom_fences:
        - name: mermaid
          class: mermaid
          format: !!python/name:pymdownx.superfences.fence_code_format
  - pymdownx.tabbed
  - pymdownx.tasklist:
      custom_checkbox: true
  - pymdownx.tilde

extra_css:
  - stylesheets/extra.css
 
plugins:
    - search
    - mkdocstrings
    - git-revision-date
    - mkdocs-jupyter:
          include_source: True
          ignore_h1_titles: True