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core_alignment_summary.txt
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core_alignment_summary.txt
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ID LENGTH ALIGNED UNALIGNED VARIANT HET MASKED LOWCOV
PID-0418-GL17__42237 5065741 4148332 819887 81285 1414 0 96108
PID-0418-GL18__42247 5065741 4573583 437145 30604 1570 0 53443
PID-0418-GL1__42253 5065741 4645341 385416 4283 745 0 34239
PID-0418-GL4__42238 5065741 4343317 671484 31703 404 0 50536
PID-0418-GL5__42250 5065741 4291223 704754 41211 668 0 69096
PID-0418-GL9__42244 5065741 4402737 598669 33845 1174 0 63161
PID-0757-GL22__57107 5065741 4251528 748080 39659 436 0 65697
PID-0757-GL23__57110 5065741 4586710 423006 29626 1602 0 54423
PID-0757-GL25__57098 5065741 4288949 712914 39237 585 0 63293
PID-0757-GL28__57071 5065741 4176351 830970 39118 114 0 58306
PID-0757-GL29__57099 5065741 4388064 580275 36066 18373 0 79029
PID-0757-GL31__57096 5065741 4223325 769165 37333 1396 0 71855
PID-0757-GL32__57087 5065741 4360123 655783 27750 835 0 49000
PID-0757-GL34__57521 5065741 4606019 405147 27818 1578 0 52997
PID-0757-GL36__57109 5065741 4515244 491634 28013 1438 0 57425
PID-0757-GL40__57092 5065741 4421215 588185 28390 1063 0 55278
PID-0757-GL42__57073 5065741 4487239 525652 27651 812 0 52038
PID-0757-GL44__57088 5065741 4477070 520983 29247 5639 0 62049
PID-0757-GL45__57089 5065741 4432800 569826 28859 3591 0 59524
PID-0757-GL46__57100 5065741 3976718 961715 81169 1631 0 125677
PID-0757-GL47__57077 5065741 3892625 1041462 79987 742 0 130912
PID-0757-GL48__57063 5065741 4649893 362787 25788 1137 0 51924
PID-0757-GL50__57113 5065741 4581024 425361 24693 1374 0 57982
PID-0757-GL53__57120 5065741 4519297 491738 24659 1650 0 53056
PID-0757-GL54__57112 5065741 4297880 722204 25280 298 0 45359
PID-0757-GL56__57091 5065741 3944540 1000521 75250 1118 0 119562
PID-0757-GL57__57105 5065741 3963837 989696 74529 1052 0 111156
PID-0757-GL58__57066 5065741 4355186 667888 24488 672 0 41995
PID-0757-GL59__57075 5065741 4560071 453661 24206 1092 0 50917
PID-0757-GL60__57104 5065741 3925969 1018535 73939 1530 0 119707
PID-0757-GL61__57061 5065741 4284345 720191 27829 937 0 60268
PID-0757-GL62__57097 5065741 4408111 593850 25381 1315 0 62465
PID-0757-GL63__57067 5065741 3800094 1146994 76290 390 0 118263
PID-0757-GL64__57060 5065741 4656148 357159 24295 1093 0 51341
PID-0757-GL65__57072 5065741 3843980 1089351 76306 1857 0 130553
PID-0757-GL66__57111 5065741 4380338 623100 24825 1220 0 61083
PID-0771-GL67__57116 5065741 3958462 992153 72438 1642 0 113484
PID-0771-GL68__57093 5065741 4558472 466473 2823 855 0 39941
PID-0771-GL70__57083 5065741 4209511 780011 31798 1582 0 74637
PID-0771-GL71__57078 5065741 4409519 592461 24794 1261 0 62500
PID-0771-GL72__57119 5065741 4511527 495341 22426 1285 0 57588
PID-0771-GL73__57059 5065741 3943257 1002242 72397 1083 0 119159
PID-0771-GL74__57095 5065741 3964885 981195 72345 1715 0 117946
PID-0771-GL75__57108 5065741 4586059 425521 22530 1311 0 52850
PID-0771-GL76__57118 5065741 4593262 417213 23681 1161 0 54105
PID-0771-GL77__57070 5065741 3941973 1010092 71826 1363 0 112313
PID-0771-GL78__57114 5065741 4520568 489513 23314 1202 0 54458
PID-0771-GL79__57082 5065741 4406861 595084 24677 1184 0 62612
PID-0771-GL80__57079 5065741 4552527 460774 23189 1098 0 51342
PID-0771-GL81__57074 5065741 3948308 1003775 71999 1534 0 112124
PID-0771-GL82__57115 5065741 4623238 409867 2705 742 0 31894
PID-0771-GL83__57068 5065741 3966374 985967 71845 1663 0 111737
PID-0771-GL84__57069 5065741 4215729 794802 23932 314 0 54896
PID-0771-GL85__57084 5065741 4379426 637546 22957 703 0 48066
PID-0771-GL86__57065 5065741 4527802 477072 23636 1925 0 58942
PID-0771-GL87__57117 5065741 4287901 703372 31249 1022 0 73446
PID-0771-GL88__57102 5065741 4323528 680396 26686 1001 0 60816
PID-0771-GL89__57094 5065741 4539144 476758 23383 1337 0 48502
PID-0771-GL90__57064 5065741 4414798 588628 24396 1391 0 60924
PID-0771-GL91__57062 5065741 4648675 370166 2724 4172 0 42728
PID-0771-GL92__57103 5065741 4315189 689251 30006 289 0 61012
PID-0771-GL93__57086 5065741 4458744 543265 24046 799 0 62933
PID-0771-GL94__57081 5065741 4530979 494739 2702 500 0 39523
PID-0771-GL95__57076 5065741 4252804 749979 29906 569 0 62389
PID-0771-GL97__57106 5065741 4465118 541203 23411 1727 0 57693
PID-0803-100__56518 5065741 4511939 503313 3325 1604 0 48885
PID-0803-101__56499 5065741 4347772 664747 24415 1107 0 52115
PID-0803-102__56494 5065741 3829947 1110347 74268 695 0 124752
PID-0803-103__56502 5065741 4554576 456396 21665 1310 0 53459
PID-0803-104__56498 5065741 4313441 688506 29685 151 0 63643
PID-0803-105__56493 5065741 4508000 498570 22317 1577 0 57594
PID-0803-106__56520 5065741 4271752 732733 26039 731 0 60525
PID-0803-107__56484 5065741 4514756 480071 22521 2216 0 68698
PID-0803-108__56500 5065741 3877368 1078057 70556 491 0 109825
PID-0803-109__56501 5065741 3851604 1104597 71737 450 0 109090
PID-0803-110__56507 5065741 4645676 382064 2378 668 0 37333
PID-0803-111__56492 5065741 4659628 367859 2386 167 0 38087
PID-0803-112__56521 5065741 3947034 1006886 62960 667 0 111154
PID-0803-113__56517 5065741 4252881 734317 30358 942 0 77601
PID-0803-114__56491 5065741 3936185 1006155 59317 1448 0 121953
PID-0803-115__56487 5065741 3867723 1069024 70983 916 0 128078
PID-0803-116__56486 5065741 4413459 597522 21488 583 0 54177
PID-0803-117__56510 5065741 4767722 262433 278 1719 0 33867
PID-0803-118__56519 5065741 4497772 496949 21554 1645 0 69375
PID-0803-119__56504 5065741 4496319 497594 21546 1773 0 70055
PID-0803-120__56489 5065741 3902277 1043303 58669 1263 0 118898
PID-0803-121__56516 5065741 3793329 1158689 70060 261 0 113462
PID-0803-122__56506 5065741 3824501 1117298 69547 197 0 123745
PID-0803-127__56505 5065741 4342927 636184 28781 1648 0 84982
PID-0803-130__56511 5065741 4536344 466768 20571 1769 0 60860
PID-0803-131__56508 5065741 4541159 465363 20871 1733 0 57486
PID-0803-132__56515 5065741 4290350 704368 28393 812 0 70211
PID-0803-133__56495 5065741 4312124 689041 27812 208 0 64368
PID-0803-134__56485 5065741 4486523 509295 23373 1261 0 68662
PID-0803-135__56503 5065741 3885761 1062968 67462 476 0 116536
PID-0803-136__56514 5065741 4403899 595703 22266 1229 0 64910
PID-0803-98__56496 5065741 3901150 1037232 69250 879 0 126480
PID-0803-99__56513 5065741 4517616 508120 2325 218 0 39787
PID-1040-GL137__64508 5065741 4540712 451537 21583 1171 0 72321
PID-1040-GL138__64569 5065741 4339697 670967 21899 483 0 54594
PID-1040-GL139__64558 5065741 3948623 988711 68692 1025 0 127382
PID-1040-GL140__64536 5065741 4436245 575919 21551 864 0 52713
PID-1040-GL141__64495 5065741 4380615 624462 22162 1246 0 59418
PID-1040-GL142__64520 5065741 4266336 740491 24464 619 0 58295
PID-1040-GL143__64542 5065741 4486923 511503 23195 1035 0 66280
PID-1040-GL144__64571 5065741 3964706 986825 65882 1599 0 112611
PID-1040-GL145__64523 5065741 4486563 511114 23184 1084 0 66980
PID-1040-GL146__64492 5065741 4029230 917634 59564 1406 0 117471
PID-1040-GL147__64517 5065741 3823678 1112452 68788 1222 0 128389
PID-1040-GL148__64500 5065741 3964777 980475 65936 1180 0 119309
PID-1040-GL149__64579 5065741 3963268 981213 65561 1868 0 119392
PID-1040-GL150__64582 5065741 4481280 524413 21049 990 0 59058
PID-1040-GL151__64559 5065741 3802912 1146825 68439 395 0 115609
PID-1040-GL152__64552 5065741 4511658 514260 2571 683 0 39140
PID-1040-GL153__64578 5065741 4226808 760575 28404 1631 0 76727
PID-1040-GL154__64560 5065741 4475224 531646 20572 1397 0 57474
PID-1040-GL155__64497 5065741 4463772 544167 21101 1051 0 56751
PID-1040-GL156__64562 5065741 3944661 1002986 64876 1229 0 116865
PID-1040-GL157__64502 5065741 4486573 523787 20950 435 0 54946
PID-1040-GL158__64526 5065741 3872596 1077787 67678 515 0 114843
PID-1040-GL160__64537 5065741 4282118 711257 27777 973 0 71393
PID-1040-GL162__64503 5065741 3876687 1070517 67673 479 0 118058
PID-1040-GL163__64533 5065741 4354376 630639 27731 1737 0 78989
PID-1040-GL164__64534 5065741 4278011 727599 23812 688 0 59443
PID-1040-GL165__64529 5065741 4299814 704538 27132 350 0 61039
PID-1040-GL166__64565 5065741 4523302 492205 20489 496 0 49738
PID-1040-GL168__64553 5065741 4638376 393031 1845 341 0 33993
PID-1040-GL171__64512 5065741 4274108 740605 21679 772 0 50256
PID-1040-GL172__64524 5065741 3935284 1018190 64418 931 0 111336
PID-1040-GL173__64549 5065741 4188120 800979 27717 468 0 76174
PID-1040-GL174__64494 5065741 4587969 428952 20587 1022 0 47798
PID-1040-GL175__64501 5065741 4363337 639636 21949 1176 0 61592
PID-1040-GL177__64525 5065741 4416948 595322 19510 992 0 52479
PID-1040-GL178__64505 5065741 3945922 1006103 64424 796 0 112920
PID-1040-GL179__64556 5065741 3740013 1216073 67269 136 0 109519
PID-1040-GL180__64570 5065741 4294175 717571 21603 900 0 53095
PID-1040-GL183__64576 5065741 4347412 634699 27493 1154 0 82476
PID-1040-GL184__64561 5065741 4371659 633305 21439 936 0 59841
PID-1040-GL185__64557 5065741 3833416 1113229 66771 405 0 118691
PID-1040-GL186__64513 5065741 4218432 778112 26881 1139 0 68058
PID-1040-GL187__64527 5065741 4547716 468285 19707 1187 0 48553
PID-1040-GL188__64573 5065741 4551608 448486 20391 1454 0 64193
PID-1040-GL189__64519 5065741 4521894 484759 20012 1538 0 57550
PID-1040-GL190__64540 5065741 4645232 338015 19215 3081 0 79413
PID-1040-GL192__64531 5065741 4292415 717924 21351 827 0 54575
PID-1040-GL193__64568 5065741 4465816 542474 20308 1099 0 56352
PID-1040-GL195__64584 5065741 3814038 1132995 65938 417 0 118291
PID-1040-GL197__64550 5065741 3963533 979817 62877 1847 0 120544
PID-1040-GL198__64583 5065741 4266144 736095 26231 677 0 62825
PID-1040-GL199__64566 5065741 3951877 991456 63606 1240 0 121168
PID-1040-GL200__64548 5065741 4533530 459517 21829 1878 0 70816
PID-1040-GL201__64510 5065741 4530966 461240 21811 1691 0 71844
PID-1040-GL202__64551 5065741 4467337 540279 20159 1110 0 57015
PID-1040-GL204__64547 5065741 4348666 635502 26973 1171 0 80402
PID-1040-GL207__64504 5065741 3840279 1095581 65583 2176 0 127705
PID-1040-GL208__64511 5065741 4282207 709745 26918 977 0 72812
PID-1040-GL209__64541 5065741 4592410 419445 20164 704 0 53182
PID-1040-GL210__64507 5065741 4587731 425248 19174 1399 0 51363
PID-1040-GL212__64521 5065741 4568129 449438 18988 909 0 47265
PID-1040-GL215__64506 5065741 4421405 574581 20965 1589 0 68166
PID-1040-GL216__64514 5065741 3746780 1207439 65011 423 0 111099
PID-1040-GL217__64575 5065741 4698181 322430 1724 1560 0 43570
PID-1040-GL219__64532 5065741 4504702 493741 20263 1895 0 65403
PID-1040-GL220__64516 5065741 3953910 997248 62155 829 0 113754
PID-1040-GL221__64499 5065741 4551348 453464 19520 1352 0 59577
PID-1040-GL222__64518 5065741 3826973 1119804 52996 1348 0 117616
PID-1040-GL223__64581 5065741 4589200 437869 1886 651 0 38021
PID-1040-GL224__64574 5065741 4098277 845859 54583 947 0 120658
PID-1040-GL225__64577 5065741 4457381 549220 19044 1220 0 57920
PID-1040-GL227__64546 5065741 4527170 479937 19383 1956 0 56678
PID-1040-GL228__64567 5065741 4338466 668085 20500 621 0 58569
PID-1040-GL229__64539 5065741 4532712 482302 19022 1788 0 48939
PID-1040-GL231__64491 5065741 4227194 769718 25859 755 0 68074
PID-1040-GL232__64538 5065741 4517964 493168 19582 966 0 53643
PID-1040-GL234__65230 5065741 3918134 776215 27169 61037 0 310355
PID-1063-GL230__67565 5065741 4608311 405752 13441 966 0 50712
PID-1063-GL233__67569 5065741 4476724 523787 13119 1677 0 63553
PID-1063-GL234__67572 5065741 3787190 1163060 34167 190 0 115301
PID-1063-GL235__67563 5065741 4357389 652727 13134 554 0 55071
PID-1063-GL236__67567 5065741 4378688 627066 13464 1541 0 58446
PID-1063-GL237__67566 5065741 4313218 709747 13382 312 0 42464
PID-1063-GL238__67560 5065741 4176829 691293 10389 103217 0 94402
PID-1063-GL239__67571 5065741 3792649 1150652 26508 263 0 122177
PID-1063-GL243__67561 5065741 4495785 512109 8174 1687 0 56160
PID-1063-GL244__67568 5065741 4206296 791415 12339 1275 0 66755
PID-1063-GL245__67564 5065741 3820631 1124220 26467 310 0 120580
PID-1063-GL246__67562 5065741 4520678 479502 8298 2177 0 63384
PID-1063-GL247__67570 5065741 4538435 455937 8301 2279 0 69090
PID-1159-GL10__69639 5065741 3831537 1122093 24461 362 0 111749
PID-1159-GL11__69648 5065741 3816574 1126111 26223 416 0 122640
PID-1159-GL123__69645 5065741 4528661 481600 9324 1362 0 54118
PID-1159-GL124__69646 5065741 4510590 509245 1508 1507 0 44399
PID-1159-GL125__69652 5065741 4506662 499290 8304 1736 0 58053
PID-1159-GL126__69644 5065741 4391116 612191 9494 1304 0 61130
PID-1159-GL128__69707 5065741 3781807 1171455 26162 365 0 112114
PID-1159-GL12__69654 5065741 4538280 470463 9038 1433 0 55565
PID-1159-GL13__69696 5065741 3773812 1164909 25818 557 0 126463
PID-1159-GL14__69701 5065741 4284518 708087 12494 1079 0 72057
PID-1159-GL159__69656 5065741 3782918 1169169 22209 379 0 113275
PID-1159-GL16__69651 5065741 3934575 1012204 23504 1898 0 117064
PID-1159-GL191__69734 5065741 4039791 937631 20595 475 0 87844
PID-1159-GL194__69717 5065741 4219711 768065 12626 844 0 77121
PID-1159-GL196__69641 5065741 3902544 1052626 23486 648 0 109923
PID-1159-GL203__69657 5065741 3690070 1259128 24334 326 0 116217
PID-1159-GL205__69640 5065741 4586330 430778 8598 1224 0 47409
PID-1159-GL20__69729 5065741 3813621 1135219 25541 423 0 116478
PID-1159-GL211__69699 5065741 4659370 368538 810 659 0 37174
PID-1159-GL213__69643 5065741 3949459 1006645 23455 975 0 108662
PID-1159-GL214__69655 5065741 3971555 981660 23032 764 0 111762
PID-1159-GL218__69653 5065741 4180694 588459 7122 37091 0 259497
PID-1159-GL226__69695 5065741 4467686 538233 6424 1568 0 58254
PID-1159-GL240__69647 5065741 3793402 1149515 22014 181 0 122643
PID-1159-GL2__69642 5065741 4484948 513276 6687 1509 0 66008
PID-1159-GL3__69649 5065741 3840382 1119923 20099 211 0 105225
PID-1159-GL55__69722 5065741 4325760 679459 8194 955 0 59567
PID-1159-GL6__69712 5065741 4385484 620869 7803 1366 0 58022
PID-1159-GL7__69697 5065741 4410600 592582 7806 1277 0 61282
PID-1159-GL8__69650 5065741 3821653 1122400 21986 247 0 121441