FASTA Parser

A command line FASTA parser and writer written in Rust.

Usage

cargo run -- <input_file> [<output_file>] [--gc] [--stats] [--transcribe] [--mrna]

Features

• Supports csv, tsv, xml, and json inputs/outputs!

Optional Flags

• --gc - Gives the GC%
• --stats - Generates length & GC% statistics and plots
• --transcribe - Transcribes DNA to RNA (T→U)
• --mrna - Removes introns during transcription using GT...AG splice sites

The transcription and mRNA featres currently only support FASTA files.

Todo: A basic UI