cptools2/pyproject.toml at main · CarragherLab/cptools2 · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
[tool.black]
line-length = 88

[tool.isort]
profile = "black"

[tool.ruff]
line-length = 88
select = ["E", "F", "W", "C90", "I"]

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "cptools2"
version = "1.0.0"
description = "Utilities to run CellProfiler workflows on clusters"
readme = "README.md"
requires-python = ">=3.8"
authors = [{ name = "CarragherLab" }]
license = "MIT"
license-files = ["LICENSE"]
dependencies = [
    "pandas>=1.3",
    "pyyaml>=5.4",
    "parserix @ git+https://github.com/CarragherLab/parserix@master",
    "scissorhands @ git+https://github.com/CarragherLab/scissorhands@master",
]
keywords = ["CellProfiler", "HPC", "batch-processing", "image-analysis", "bioimaging"]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

[project.urls]
Homepage = "https://github.com/CarragherLab/cptools2"
Issues = "https://github.com/CarragherLab/cptools2/issues"
Documentation = "https://github.com/CarragherLab/cptools2#readme"

[tool.setuptools.packages.find]
include = ["cptools2"]
exclude = ["tests", "data", "examples"]

[project.scripts]
cptools2 = "cptools2.__main__:main"

[project.optional-dependencies]
dev = [
    "pytest>=7.0",
    "pytest-cov",
    "black>=23.0",
    "isort>=5.0",
    "ruff>=0.0.280",
    "pre-commit",
]