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Data-describing-Sample.md

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Definition

Introduced in 2020 (Eklund et al., 2020), the component Sample is a portion or quantity of biological material that is collected from a sample donor, or a digital representation of a biological entity of the sample donor, such as an image.

Attribute Code Attribute Name Allowed Values Description Constraints Cardinality
MIABIS-SAMPLE-01 Sample ID Coded string Unique ID of the sample within a sample collection, often represented by the sample barcode; text identifier. The Sample ID is meant for sharing. Pseudonymized, alphanumeric. It is recommended that sample IDs are persistent within a given biobank. 1
MIABIS-SAMPLE-02 Detailed sample type Text list The type of biological specimen intended for testing diagnostics, disease propagation, treatment, or for research purposes. 1
MIABIS-SAMPLE-03 Sample storage temperature List: RT, 2oC to 10oC, -18oC to -35oC, -60oC to -85oC, -150oC, LN, Other The long-term temperature at which the sample is stored after preparation, based on SPREC v3 and MIABIS-2.0-15 0
MIABIS-SAMPLE-04 Sample creation date and time yyyy-mm-ddThh:mm:ss The date and time the sample was created in the form previously described in MIABIS-SAMPLE-02. Date/time format must be ISO8601-compliant or partial, for example, YYYY 0
MIABIS-SAMPLE-05 Anatomical site ontology String Name of ontology used for describing the anatomical source of the sample material, for example, ICD-O-3 topography code MIABIS-SAMPLE-05 and MIABIS-SAMPLE-06 are required if any ontology information is provided 0/1
MIABIS-SAMPLE-06 Anatomical site ontology version Coded string Version of selected ontology for anatomical site MIABIS-SAMPLE-05 and MIABIS-SAMPLE-06 are required if any ontology information is provided 0/1
MIABIS-SAMPLE-07 Anatomical site ontology code Coded string Anatomical site code from the selected anatomical site ontology version 0
MIABIS-SAMPLE-08 Anatomical site ontology description String Description from the selected anatomical site ontology code 0
MIABIS-SAMPLE-09 Anatomical site free text String Explanation about Anatomical site in case of unknown Anatomical site or insufficient information 0
MIABIS-SAMPLE-10 Sample content diagnosis Text list The ICD-10 code describing the diagnosis of the sample content, such as whether the sample contains carcinogenic material 0...n
MIABIS-SAMPLE-11 Use restrictions Text list The restrictions that may change the availability of the samples donated by the sample donor 0...n