Dockerfile.system

# Build the image:
# docker build -f Dockerfile.system --build-arg BASE=jammy -t chaste/runner:system .

# Run the container in interactive mode:
# docker run --init -it -e RUNNER_OFF=1 chaste/runner:system /bin/bash

# Run the container as a GitHub Actions runner:
# docker run --init -it chaste/runner:system

ARG BASE=jammy

FROM ubuntu:${BASE}

SHELL ["/bin/bash", "-e", "-o", "pipefail", "-c"]

USER root

ENV DEFAULT_USER="runner" \
    DEFAULT_HOME="/home/runner" \
    RUNNER_DIR="/home/runner/actions-runner" \
    RUNNER_WORK_DIR="/home/runner/_work" \
    MODULES_DIR="/home/runner/modules"

# Copy scripts
COPY scripts/*.sh scripts/system/ /usr/local/bin/

# Setup Chaste dependencies and install actions runner
RUN useradd -r -m -d ${DEFAULT_HOME} -s /bin/bash ${DEFAULT_USER} && \
    setup_system.sh && \
    runner_install.sh --install_dir="/tmp/tmp-runner" && \
    /tmp/tmp-runner/bin/installdependencies.sh && \
    apt-get -y clean && \
    rm -rf /var/cache/apt && \
    rm -rf /var/lib/apt/lists/* && \
    rm -rf /var/tmp/* && \
    rm -rf /tmp/*

USER ${DEFAULT_USER}:${DEFAULT_USER}
WORKDIR ${DEFAULT_HOME}

# Add modulefile stubs for system dependency versions
RUN source /etc/profile.d/modules.sh && \
    mkdir -p ${MODULES_DIR}/modulefiles && \
    module use ${MODULES_DIR}/modulefiles && \
    echo "module use ${MODULES_DIR}/modulefiles" >> ${DEFAULT_HOME}/.bashrc && \
    install_modulefiles.sh --modules-dir=${MODULES_DIR} && \
    module test boost && \
    module test xsd && \
    module test xercesc && \
    module test petsc_hdf5 && \
    module test sundials && \
    module test vtk

ENTRYPOINT ["docker-entrypoint.sh"]