diff --git a/.buildkite/dss_scaling/pipeline.yml b/.buildkite/dss_scaling/pipeline.yml index 44f20f8d6b..7765d6c7fa 100644 --- a/.buildkite/dss_scaling/pipeline.yml +++ b/.buildkite/dss_scaling/pipeline.yml @@ -1,5 +1,5 @@ env: - JULIA_VERSION: "1.8.3" + JULIA_VERSION: "1.9.2" MPICH_VERSION: "4.0.0" OPENMPI_VERSION: "4.1.1" CUDA_VERSION: "11.2" diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index 5eca154b84..e874c374d0 100755 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -1,13 +1,14 @@ agents: queue: central slurm_mem: 8G - modules: julia/1.8.5 cuda/11.8 ucx/1.14.1_cuda-11.8 openmpi/4.1.5_cuda-11.8 hdf5/1.12.2-ompi415 nsight-systems/2023.2.1 + modules: julia/1.9.2 cuda/11.8 ucx/1.14.1_cuda-11.8 openmpi/4.1.5_cuda-11.8 hdf5/1.12.2-ompi415 nsight-systems/2023.2.1 env: JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite" OPENBLAS_NUM_THREADS: 1 JULIA_NVTX_CALLBACKS: gc OMPI_MCA_opal_warn_on_missing_libcuda: 0 + JULIA_CPU_TARGET: broadwell # arch used by GPU nodes steps: - label: "initialize" diff --git a/.buildkite/scaling/pipeline.yml b/.buildkite/scaling/pipeline.yml index 8699912840..b32d8a52f3 100644 --- a/.buildkite/scaling/pipeline.yml +++ b/.buildkite/scaling/pipeline.yml @@ -1,5 +1,5 @@ env: - JULIA_VERSION: "1.8.3" + JULIA_VERSION: "1.9.2" MPICH_VERSION: "4.0.0" OPENMPI_VERSION: "4.1.1" CUDA_VERSION: "11.2" diff --git a/.github/workflows/ClimaCoreMakie.yml b/.github/workflows/ClimaCoreMakie.yml index 0178ccc04d..1d238be631 100644 --- a/.github/workflows/ClimaCoreMakie.yml +++ b/.github/workflows/ClimaCoreMakie.yml @@ -17,7 +17,7 @@ jobs: uses: actions/checkout@v2 - uses: julia-actions/setup-julia@latest with: - version: '1.8' + version: '1.9' - uses: actions/cache@v1 env: cache-name: cache-artifacts diff --git a/.github/workflows/ClimaCorePlots.yml b/.github/workflows/ClimaCorePlots.yml index 663a0c7c50..7d42391b5a 100644 --- a/.github/workflows/ClimaCorePlots.yml +++ b/.github/workflows/ClimaCorePlots.yml @@ -17,7 +17,7 @@ jobs: uses: actions/checkout@v2 - uses: julia-actions/setup-julia@latest with: - version: '1.8' + version: '1.9' - uses: actions/cache@v1 env: cache-name: cache-artifacts diff --git a/.github/workflows/ClimaCoreSpectra.yml b/.github/workflows/ClimaCoreSpectra.yml index 28ab95162f..96ca35f149 100644 --- a/.github/workflows/ClimaCoreSpectra.yml +++ b/.github/workflows/ClimaCoreSpectra.yml @@ -17,7 +17,7 @@ jobs: uses: actions/checkout@v2 - uses: julia-actions/setup-julia@latest with: - version: '1.8' + version: '1.9' - uses: actions/cache@v1 env: cache-name: cache-artifacts diff --git a/.github/workflows/ClimaCoreTempestRemap.yml b/.github/workflows/ClimaCoreTempestRemap.yml index b6b6f59f3c..952f03a736 100644 --- a/.github/workflows/ClimaCoreTempestRemap.yml +++ b/.github/workflows/ClimaCoreTempestRemap.yml @@ -17,7 +17,7 @@ jobs: uses: actions/checkout@v2 - uses: julia-actions/setup-julia@latest with: - version: '1.8' + version: '1.9' - uses: actions/cache@v1 env: cache-name: cache-artifacts diff --git a/.github/workflows/ClimaCoreVTK.yml b/.github/workflows/ClimaCoreVTK.yml index 85582ebdc2..fb80cfce3d 100644 --- a/.github/workflows/ClimaCoreVTK.yml +++ b/.github/workflows/ClimaCoreVTK.yml @@ -17,7 +17,7 @@ jobs: uses: actions/checkout@v2 - uses: julia-actions/setup-julia@latest with: - version: '1.8' + version: '1.9' - uses: actions/cache@v1 env: cache-name: cache-artifacts diff --git a/.github/workflows/CodeCov.yml b/.github/workflows/CodeCov.yml index 8774678f51..af3dc14339 100644 --- a/.github/workflows/CodeCov.yml +++ b/.github/workflows/CodeCov.yml @@ -19,7 +19,7 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@latest with: - version: 1.8 + version: 1.9 - name: Test with coverage run: | diff --git a/.github/workflows/JuliaFormatter.yml b/.github/workflows/JuliaFormatter.yml index 09793bc9ea..0e69c344b9 100644 --- a/.github/workflows/JuliaFormatter.yml +++ b/.github/workflows/JuliaFormatter.yml @@ -36,7 +36,7 @@ jobs: - uses: julia-actions/setup-julia@latest if: steps.filter.outputs.julia_file_change == 'true' with: - version: 1.8 + version: 1.9 - name: Apply JuliaFormatter if: steps.filter.outputs.julia_file_change == 'true' diff --git a/.github/workflows/Linux-UnitTests.yml b/.github/workflows/Linux-UnitTests.yml index 441b7bbb31..fb8f741464 100644 --- a/.github/workflows/Linux-UnitTests.yml +++ b/.github/workflows/Linux-UnitTests.yml @@ -16,7 +16,7 @@ jobs: strategy: fail-fast: false matrix: - julia-version: ['1.8'] + julia-version: ['1.9'] env: CLIMATEMACHINE_SETTINGS_FIX_RNG_SEED: "true" diff --git a/.github/workflows/OS-UnitTests.yml b/.github/workflows/OS-UnitTests.yml index f39e6c41ca..d407b0fd4e 100644 --- a/.github/workflows/OS-UnitTests.yml +++ b/.github/workflows/OS-UnitTests.yml @@ -45,7 +45,7 @@ jobs: uses: julia-actions/setup-julia@v1 if: steps.filter.outputs.run_test == 'true' with: - version: 1.8 + version: 1.9 - name: Cache artifacts uses: julia-actions/cache@v1 diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index e256e73bc8..7a58cd2d93 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -16,7 +16,7 @@ jobs: - uses: actions/checkout@v2 - uses: julia-actions/setup-julia@latest with: - version: 1.8 + version: 1.9 - name: Install dependencies run: julia --project=docs -e 'using Pkg; Pkg.instantiate(;verbose=true)' - name: Build and deploy diff --git a/benchmarks/bickleyjet/Manifest.toml b/benchmarks/bickleyjet/Manifest.toml index 513ef86bcc..6bd228d84c 100644 --- a/benchmarks/bickleyjet/Manifest.toml +++ b/benchmarks/bickleyjet/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.5" +julia_version = "1.9.2" manifest_format = "2.0" project_hash = "08c83b032e138c0186ad354ce66e1930ea00b8ee" @@ -10,16 +10,25 @@ uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" version = "0.1.6" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] +deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.6.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" @@ -31,6 +40,22 @@ git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.4.11" + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "6189f7819e6345bcc097331c7db571f2f211364f" @@ -53,10 +78,14 @@ uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" version = "0.4.2" [[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] git-tree-sha1 = "3cddbe0fad23df52587e675b3d71eea66b850cb9" uuid = "aae01518-5342-5314-be14-df237901396f" version = "0.17.34" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -131,24 +160,12 @@ git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.16.1+1" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.16.0" -[[deps.ChangesOfVariables]] -deps = ["InverseFunctions", "LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" - [[deps.ClimaComms]] deps = ["CUDA", "MPI"] git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" @@ -190,6 +207,10 @@ deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statist git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] @@ -209,15 +230,19 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] +deps = ["UUIDs"] git-tree-sha1 = "5ce999a19f4ca23ea484e92a1774a61b8ca4cf8e" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.8.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.1+0" +version = "1.0.5+0" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] @@ -230,6 +255,11 @@ deps = ["LinearAlgebra"] git-tree-sha1 = "fe2838a593b5f776e1597e086dcd47560d94e816" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.5.3" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -270,20 +300,38 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DelimitedFiles]] deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" +version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] git-tree-sha1 = "c5692436e7f8279503466db216c74165d1b301e4" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" version = "6.127.0" + [deps.DiffEqBase.extensions] + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + DiffEqBaseZygoteExt = "Zygote" + + [deps.DiffEqBase.weakdeps] + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -300,12 +348,6 @@ version = "1.15.1" deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" -[[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.98" - [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -317,12 +359,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.Elliptic]] git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" uuid = "b305315f-e792-5b7a-8f41-49f472929428" @@ -408,10 +444,14 @@ uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" [[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" version = "0.10.35" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -534,12 +574,6 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -556,16 +590,14 @@ deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] +deps = ["Dates", "Random"] git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.7" +weakdeps = ["Statistics"] -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -607,6 +639,12 @@ git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" version = "0.9.8" + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" @@ -654,6 +692,14 @@ git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.16.1" + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" @@ -741,15 +787,25 @@ uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.36.0+0" [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.24" + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -771,6 +827,14 @@ git-tree-sha1 = "49579593ac2c5f9213c61eead3e39606d22a2a04" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" version = "0.20.13" + [deps.MPI.extensions] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + + [deps.MPI.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" @@ -813,7 +877,7 @@ version = "1.1.7" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.0+0" +version = "2.28.2+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -837,7 +901,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.2.1" +version = "2022.10.11" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -863,7 +927,7 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.20+0" +version = "0.3.21+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -908,13 +972,7 @@ version = "1.6.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.17" +version = "10.42.0+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -940,9 +998,9 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.42.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.8.0" +version = "1.9.2" [[deps.PkgVersion]] deps = ["Pkg"] @@ -968,6 +1026,20 @@ git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" version = "1.38.17" + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] git-tree-sha1 = "3d811babe092a6e7b130beee84998fe7663348b6" @@ -986,6 +1058,12 @@ git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" version = "0.4.12" + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" @@ -1018,12 +1096,6 @@ git-tree-sha1 = "364898e8f13f7eaaceec55fd3d08680498c0aa6e" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.4.2+3" -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.2" - [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1062,6 +1134,16 @@ git-tree-sha1 = "7ed35fb5f831aaf09c2d7c8736d44667a1afdcb0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" version = "2.38.7" + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -1079,18 +1161,6 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - [[deps.RootSolvers]] deps = ["DocStringExtensions", "ForwardDiff"] git-tree-sha1 = "9fb3462240d2898be5d4acf8925e47f70ec64d07" @@ -1166,14 +1236,18 @@ uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.1.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.3.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.Static]] deps = ["IfElse"] @@ -1187,11 +1261,23 @@ git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.4.0" + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + + [deps.StaticArrayInterface.weakdeps] + OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] +deps = ["LinearAlgebra", "Random", "StaticArraysCore"] git-tree-sha1 = "9cabadf6e7cd2349b6cf49f1915ad2028d65e881" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.6.2" +weakdeps = ["Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" @@ -1201,6 +1287,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.9.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1214,12 +1301,6 @@ git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.0" -[[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" - [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" @@ -1230,6 +1311,11 @@ version = "0.4.17" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "5.10.1+6" + [[deps.SymbolicIndexingInterface]] deps = ["DocStringExtensions"] git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" @@ -1239,7 +1325,7 @@ version = "0.2.2" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.0" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1256,7 +1342,7 @@ version = "1.10.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.1" +version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] @@ -1264,6 +1350,12 @@ git-tree-sha1 = "50718b4fc1ce20cecf28d85215028c78b4d875c2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" version = "0.15.2" + [deps.TaylorSeries.extensions] + TaylorSeriesIAExt = "IntervalArithmetic" + + [deps.TaylorSeries.weakdeps] + IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -1327,11 +1419,19 @@ uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.Unitful]] -deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"] +deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "786e80c8ae3ed0c69b2e9799dac321d2cdbccd89" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.16.0" + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + + [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" @@ -1513,7 +1613,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.12+3" +version = "1.2.13+0" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1546,9 +1646,9 @@ uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.8.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/docs/Manifest.toml b/docs/Manifest.toml index c07a9e4513..7ef2f626a8 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.5" +julia_version = "1.9.2" manifest_format = "2.0" project_hash = "742ff6c117e7a92658df5c1173a0238a5924d0d7" @@ -15,10 +15,15 @@ uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" version = "0.0.1" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] +deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.AbstractLattices]] git-tree-sha1 = "f35684b7349da49fcc8a9e520e30e45dbb077166" @@ -35,6 +40,10 @@ deps = ["LinearAlgebra", "Requires"] git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.6.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.Animations]] deps = ["Colors"] @@ -58,6 +67,22 @@ git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.4.11" + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" @@ -104,10 +129,14 @@ uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" version = "0.4.2" [[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] git-tree-sha1 = "3cddbe0fad23df52587e675b3d71eea66b850cb9" uuid = "aae01518-5342-5314-be14-df237901396f" version = "0.17.34" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -226,12 +255,6 @@ git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.16.0" -[[deps.ChangesOfVariables]] -deps = ["InverseFunctions", "LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" - [[deps.ClimaComms]] deps = ["CUDA", "MPI"] git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" @@ -339,15 +362,19 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] +deps = ["UUIDs"] git-tree-sha1 = "5ce999a19f4ca23ea484e92a1774a61b8ca4cf8e" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.8.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.1+0" +version = "1.0.5+0" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] @@ -360,6 +387,11 @@ deps = ["LinearAlgebra"] git-tree-sha1 = "fe2838a593b5f776e1597e086dcd47560d94e816" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.5.3" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -399,27 +431,49 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DelaunayTriangulation]] -deps = ["DataStructures", "EnumX", "ExactPredicates", "MakieCore", "Random", "SimpleGraphs"] +deps = ["DataStructures", "EnumX", "ExactPredicates", "Random", "SimpleGraphs"] git-tree-sha1 = "a1d8532de83f8ce964235eff1edeff9581144d02" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" version = "0.7.2" +weakdeps = ["MakieCore"] + + [deps.DelaunayTriangulation.extensions] + DelaunayTriangulationMakieCoreExt = "MakieCore" [[deps.DelimitedFiles]] deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" +version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] git-tree-sha1 = "c5692436e7f8279503466db216c74165d1b301e4" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" version = "6.127.0" + [deps.DiffEqBase.extensions] + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + DiffEqBaseZygoteExt = "Zygote" + + [deps.DiffEqBase.weakdeps] + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -433,21 +487,33 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.9" +weakdeps = ["SparseArrays"] + + [deps.Distances.extensions] + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" version = "0.25.98" + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -595,11 +661,21 @@ uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" version = "1.5.0" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" version = "2.21.1" + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" @@ -619,10 +695,14 @@ uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" [[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" version = "0.10.35" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType]] deps = ["CEnum", "FreeType2_jll"] @@ -890,16 +970,14 @@ uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" version = "0.20.9" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] +deps = ["Dates", "Random"] git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.7" +weakdeps = ["Statistics"] -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -970,6 +1048,12 @@ git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" version = "0.9.8" + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" @@ -1029,6 +1113,14 @@ git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.16.1" + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" @@ -1133,7 +1225,7 @@ uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" version = "7.2.0" [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearAlgebraX]] @@ -1148,6 +1240,20 @@ git-tree-sha1 = "d2605a42d5453f510ca0fe37eff8aa0bfc5a3c80" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" version = "2.4.2" + [deps.LinearSolve.extensions] + LinearSolveCUDAExt = "CUDA" + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolvePardisoExt = "Pardiso" + + [deps.LinearSolve.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + [[deps.Literate]] deps = ["Base64", "IOCapture", "JSON", "REPL"] git-tree-sha1 = "1c4418beaa6664041e0f9b48f0710f57bff2fcbe" @@ -1155,11 +1261,21 @@ uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" version = "2.14.0" [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.24" + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -1170,10 +1286,15 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.0" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" version = "0.12.165" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1187,6 +1308,14 @@ git-tree-sha1 = "1ccbd6980b4ff1e1e411086d01696048e6013653" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" version = "0.20.10" + [deps.MPI.extensions] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + + [deps.MPI.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" @@ -1257,7 +1386,7 @@ version = "1.1.7" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.0+0" +version = "2.28.2+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1292,7 +1421,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.2.1" +version = "2022.10.11" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1304,12 +1433,6 @@ git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" version = "0.4.4" -[[deps.MutableArithmetics]] -deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "964cb1a7069723727025ae295408747a0b36a854" -uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.3.0" - [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"] git-tree-sha1 = "4263c4220f22e20729329838bf7e94a49d1ac32f" @@ -1375,14 +1498,14 @@ version = "1.3.5+1" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c6c2ed4b7acd2137b878eb96c68e63b76199d0f" +git-tree-sha1 = "2fb9ee2dc14d555a6df2a714b86b7125178344c2" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.17+0" +version = "0.3.21+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.20+0" +version = "0.3.21+4" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1451,7 +1574,7 @@ version = "6.53.4" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" +version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1466,10 +1589,10 @@ uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.4.0" [[deps.PackageExtensionCompat]] -deps = ["Requires", "TOML"] git-tree-sha1 = "32f3d52212a8d1c5d589a58851b1f04c97339110" uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" version = "1.0.0" +weakdeps = ["Requires", "TOML"] [[deps.Packing]] deps = ["GeometryBasics"] @@ -1513,9 +1636,9 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.42.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.8.0" +version = "1.9.2" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1541,6 +1664,20 @@ git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" version = "1.38.17" + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] git-tree-sha1 = "3d811babe092a6e7b130beee84998fe7663348b6" @@ -1559,11 +1696,21 @@ uuid = "647866c9-e3ac-4575-94e7-e3d426903924" version = "0.1.2" [[deps.Polynomials]] -deps = ["ChainRulesCore", "LinearAlgebra", "MakieCore", "MutableArithmetics", "RecipesBase"] +deps = ["LinearAlgebra", "RecipesBase"] git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "3.2.13" + [deps.Polynomials.extensions] + PolynomialsChainRulesCoreExt = "ChainRulesCore" + PolynomialsMakieCoreExt = "MakieCore" + PolynomialsMutableArithmeticsExt = "MutableArithmetics" + + [deps.Polynomials.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" + MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" + [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -1576,6 +1723,12 @@ git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" version = "0.4.12" + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" @@ -1658,6 +1811,10 @@ deps = ["Requires"] git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1677,6 +1834,16 @@ git-tree-sha1 = "7ed35fb5f831aaf09c2d7c8736d44667a1afdcb0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" version = "2.38.7" + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] git-tree-sha1 = "9088515ad915c99026beb5436d0a09cd8c18163e" @@ -1835,9 +2002,15 @@ version = "0.8.4" [[deps.SimpleNonlinearSolve]] deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "91fcc402c4ab978ad5759489db9a9c5a71732f2d" +git-tree-sha1 = "20aa9831d654bab67ed561e78917047143ecb9bf" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.18" +version = "0.1.19" + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveNNlibExt = "NNlib" + + [deps.SimpleNonlinearSolve.weakdeps] + NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" [[deps.SimplePartitions]] deps = ["AbstractLattices", "DataStructures", "Permutations"] @@ -1890,7 +2063,7 @@ uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.1.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] @@ -1899,6 +2072,12 @@ git-tree-sha1 = "4c1a57bcbc0b795fbfdc2009e70f9c2fd2815bfe" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" version = "2.4.1" + [deps.SparseDiffTools.extensions] + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" @@ -1906,10 +2085,14 @@ uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" version = "0.3.9" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.3.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.StableHashTraits]] deps = ["CRC32c", "Compat", "Dates", "SHA", "Tables", "TupleTools", "UUIDs"] @@ -1934,12 +2117,21 @@ deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "Snoo git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.4.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] +deps = ["LinearAlgebra", "Random", "StaticArraysCore"] git-tree-sha1 = "9cabadf6e7cd2349b6cf49f1915ad2028d65e881" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.6.2" +weakdeps = ["Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" @@ -1949,6 +2141,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.9.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1963,11 +2156,19 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.0" [[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.3.0" + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" @@ -1993,7 +2194,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+0" +version = "5.10.1+6" [[deps.SymbolicIndexingInterface]] deps = ["DocStringExtensions"] @@ -2004,7 +2205,7 @@ version = "0.2.2" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.0" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -2021,13 +2222,17 @@ version = "1.10.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.1" +version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] git-tree-sha1 = "50718b4fc1ce20cecf28d85215028c78b4d875c2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" version = "0.15.2" +weakdeps = ["IntervalArithmetic"] + + [deps.TaylorSeries.extensions] + TaylorSeriesIAExt = "IntervalArithmetic" [[deps.TempestRemap_jll]] deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll", "Pkg"] @@ -2120,11 +2325,19 @@ uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.Unitful]] -deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"] +deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "786e80c8ae3ed0c69b2e9799dac321d2cdbccd89" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.16.0" + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + + [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" @@ -2341,7 +2554,7 @@ version = "0.4.9" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.12+3" +version = "1.2.13+0" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2380,9 +2593,9 @@ uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.8.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/docs/src/installation_instructions.md b/docs/src/installation_instructions.md index 4371f31b22..495364db5b 100644 --- a/docs/src/installation_instructions.md +++ b/docs/src/installation_instructions.md @@ -6,8 +6,8 @@ command prompt and ```julia julia> ] -(v1.8) pkg> add ClimaCore -(v1.8) pkg> instantiate +(v1.9) pkg> add ClimaCore +(v1.9) pkg> instantiate ``` This will install the latest tagged release of the package. @@ -17,15 +17,15 @@ This will install the latest tagged release of the package. ```julia julia> ] - (v1.8) pkg> add ClimaCore#main - (v1.8) pkg> instantiate + (v1.9) pkg> add ClimaCore#main + (v1.9) pkg> instantiate ``` You can run the tests via the package manager by: ```julia julia> ] -(v1.8) pkg> test ClimaCore +(v1.9) pkg> test ClimaCore ``` # Running examples diff --git a/examples/Manifest.toml b/examples/Manifest.toml index b2493bf065..e95f4e5f58 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.5" +julia_version = "1.9.2" manifest_format = "2.0" project_hash = "141c5cdc20468482f0f3af072451891b55147e8a" @@ -16,10 +16,15 @@ uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" version = "0.5.1" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] +deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -31,6 +36,10 @@ deps = ["LinearAlgebra", "Requires"] git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.6.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -53,6 +62,22 @@ git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.4.11" + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" @@ -92,6 +117,20 @@ git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" version = "0.3.39" + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -176,24 +215,12 @@ git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.16.1+1" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.16.0" -[[deps.ChangesOfVariables]] -deps = ["InverseFunctions", "LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" - [[deps.ClimaComms]] deps = ["CUDA", "MPI"] git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" @@ -259,6 +286,10 @@ deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statist git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] @@ -284,15 +315,19 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] +deps = ["UUIDs"] git-tree-sha1 = "5ce999a19f4ca23ea484e92a1774a61b8ca4cf8e" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.8.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.1+0" +version = "1.0.5+0" [[deps.CompositeTypes]] git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638" @@ -304,6 +339,12 @@ git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" version = "0.1.2" + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + + [deps.CompositionsBase.weakdeps] + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" @@ -315,6 +356,11 @@ deps = ["LinearAlgebra"] git-tree-sha1 = "fe2838a593b5f776e1597e086dcd47560d94e816" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.5.3" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -360,26 +406,48 @@ version = "0.1.2" [[deps.DelimitedFiles]] deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" +version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] git-tree-sha1 = "c5692436e7f8279503466db216c74165d1b301e4" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" version = "6.127.0" + [deps.DiffEqBase.extensions] + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + DiffEqBaseZygoteExt = "Zygote" + + [deps.DiffEqBase.weakdeps] + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] git-tree-sha1 = "303ab70e4524843653e55e16a3dc7b75e677a3dd" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" version = "2.27.0" + [deps.DiffEqCallbacks.weakdeps] + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" + [[deps.DiffEqOperators]] deps = ["BandedMatrices", "BlockBandedMatrices", "DiffEqBase", "DomainSets", "ForwardDiff", "LazyArrays", "LazyBandedMatrices", "LinearAlgebra", "LoopVectorization", "NNlib", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "SuiteSparse"] git-tree-sha1 = "ef0f24d69406bf85092c843691ab2ae3b2e34b77" @@ -399,21 +467,19 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.9" +weakdeps = ["SparseArrays"] + + [deps.Distances.extensions] + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" -[[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.98" - [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -431,12 +497,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.Elliptic]] git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" uuid = "b305315f-e792-5b7a-8f41-49f472929428" @@ -527,10 +587,16 @@ uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" version = "0.13.11" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" version = "2.21.1" +weakdeps = ["BandedMatrices", "BlockBandedMatrices", "StaticArrays"] + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -551,10 +617,14 @@ uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" [[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" version = "0.10.35" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -695,12 +765,6 @@ git-tree-sha1 = "d38bd0d9759e3c6cfa19bdccc314eccf8ce596cc" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.15" -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -727,16 +791,14 @@ deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] +deps = ["Dates", "Random"] git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.7" +weakdeps = ["Statistics"] -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -802,6 +864,12 @@ git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" version = "0.9.8" + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] git-tree-sha1 = "6dc4ad9cd74ad4ca0a8e219e945dbd22039f2125" @@ -867,6 +935,14 @@ git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.16.1" + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" @@ -984,7 +1060,7 @@ uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" version = "7.2.0" [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] @@ -999,12 +1075,28 @@ git-tree-sha1 = "4a4f8cc7a59fadbb02d1852d1e0cef5dca3a9460" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" version = "1.42.0" + [deps.LinearSolve.extensions] + LinearSolveHYPRE = "HYPRE" + + [deps.LinearSolve.weakdeps] + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.24" + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -1015,10 +1107,15 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.0" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" version = "0.12.165" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1032,6 +1129,14 @@ git-tree-sha1 = "1ccbd6980b4ff1e1e411086d01696048e6013653" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" version = "0.20.10" + [deps.MPI.extensions] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + + [deps.MPI.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" @@ -1080,7 +1185,7 @@ version = "1.1.7" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.0+0" +version = "2.28.2+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1110,7 +1215,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.2.1" +version = "2022.10.11" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1141,6 +1246,12 @@ git-tree-sha1 = "72240e3f5ca031937bd536182cb2c031da5f46dd" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" version = "0.8.21" + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] git-tree-sha1 = "c1bfdab07fa259baa4604a05862c43004dd3cd45" @@ -1189,14 +1300,14 @@ version = "1.3.5+1" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c6c2ed4b7acd2137b878eb96c68e63b76199d0f" +git-tree-sha1 = "2fb9ee2dc14d555a6df2a714b86b7125178344c2" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.17+0" +version = "0.3.21+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.20+0" +version = "0.3.21+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1247,19 +1358,13 @@ version = "6.51.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.17" +version = "10.42.0+0" [[deps.PackageExtensionCompat]] -deps = ["Requires", "TOML"] git-tree-sha1 = "32f3d52212a8d1c5d589a58851b1f04c97339110" uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" version = "1.0.0" +weakdeps = ["Requires", "TOML"] [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1285,9 +1390,9 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.42.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.8.0" +version = "1.9.2" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1313,6 +1418,20 @@ git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" version = "1.38.17" + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] git-tree-sha1 = "3d811babe092a6e7b130beee84998fe7663348b6" @@ -1331,6 +1450,12 @@ git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" version = "0.4.12" + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" @@ -1409,6 +1534,16 @@ git-tree-sha1 = "7ed35fb5f831aaf09c2d7c8736d44667a1afdcb0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" version = "2.38.7" + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] git-tree-sha1 = "9088515ad915c99026beb5436d0a09cd8c18163e" @@ -1438,18 +1573,6 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - [[deps.RootSolvers]] deps = ["DocStringExtensions", "ForwardDiff"] git-tree-sha1 = "9fb3462240d2898be5d4acf8925e47f70ec64d07" @@ -1527,9 +1650,13 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "91fcc402c4ab978ad5759489db9a9c5a71732f2d" +git-tree-sha1 = "20aa9831d654bab67ed561e78917047143ecb9bf" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.18" +version = "0.1.19" +weakdeps = ["NNlib"] + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveNNlibExt = "NNlib" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1558,7 +1685,7 @@ uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.1.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] @@ -1574,10 +1701,14 @@ uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" version = "0.3.9" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.3.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.SplittablesBase]] deps = ["Setfield", "Test"] @@ -1596,12 +1727,21 @@ deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "Snoo git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.4.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] +deps = ["LinearAlgebra", "Random", "StaticArraysCore"] git-tree-sha1 = "9cabadf6e7cd2349b6cf49f1915ad2028d65e881" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.6.2" +weakdeps = ["Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" @@ -1611,6 +1751,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.9.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1624,12 +1765,6 @@ git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.0" -[[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" - [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" @@ -1643,7 +1778,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+0" +version = "5.10.1+6" [[deps.SymbolicIndexingInterface]] deps = ["DocStringExtensions"] @@ -1654,7 +1789,7 @@ version = "0.2.2" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.0" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1671,7 +1806,7 @@ version = "1.10.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.1" +version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] @@ -1679,6 +1814,12 @@ git-tree-sha1 = "50718b4fc1ce20cecf28d85215028c78b4d875c2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" version = "0.15.2" + [deps.TaylorSeries.extensions] + TaylorSeriesIAExt = "IntervalArithmetic" + + [deps.TaylorSeries.weakdeps] + IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" + [[deps.TempestRemap_jll]] deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll", "Pkg"] git-tree-sha1 = "88c3818a492ad1a94b1aa440b01eab5d133209ff" @@ -1731,6 +1872,20 @@ git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.78" + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" @@ -1777,11 +1932,19 @@ uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.Unitful]] -deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"] +deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "786e80c8ae3ed0c69b2e9799dac321d2cdbccd89" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.16.0" + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + + [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" @@ -1986,7 +2149,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.12+3" +version = "1.2.13+0" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2019,9 +2182,9 @@ uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.8.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/examples/hybrid/sphere/README.md b/examples/hybrid/sphere/README.md index be0bf5b0d9..d0e3d084d7 100644 --- a/examples/hybrid/sphere/README.md +++ b/examples/hybrid/sphere/README.md @@ -13,7 +13,7 @@ Here is a sbatch script template for setting up simulations on caltech central h #SBATCH --output=$YOUR_SIMULATION_LOG_DIR/simulation.log module purge -module load julia/1.8.3 openmpi/4.1.1 +module load julia/1.9.2 openmpi/4.1.1 export JULIA_MPI_BINARY=system export JULIA_CUDA_USE_BINARYBUILDER=false diff --git a/lib/ClimaCoreMakie/examples/Manifest.toml b/lib/ClimaCoreMakie/examples/Manifest.toml index 2e27ca4c84..50cf6529f3 100644 --- a/lib/ClimaCoreMakie/examples/Manifest.toml +++ b/lib/ClimaCoreMakie/examples/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.5" +julia_version = "1.9.2" manifest_format = "2.0" project_hash = "d088a1372f5f159971622e9e73fad4fdf04746c7" @@ -10,10 +10,15 @@ uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" version = "0.1.6" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] +deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.AbstractLattices]] git-tree-sha1 = "f35684b7349da49fcc8a9e520e30e45dbb077166" @@ -30,6 +35,10 @@ deps = ["LinearAlgebra", "Requires"] git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.6.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.Animations]] deps = ["Colors"] @@ -47,6 +56,22 @@ git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.4.11" + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "6189f7819e6345bcc097331c7db571f2f211364f" @@ -87,10 +112,14 @@ uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" version = "0.4.2" [[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] git-tree-sha1 = "3cddbe0fad23df52587e675b3d71eea66b850cb9" uuid = "aae01518-5342-5314-be14-df237901396f" version = "0.17.34" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -186,12 +215,6 @@ git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.16.0" -[[deps.ChangesOfVariables]] -deps = ["InverseFunctions", "LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" - [[deps.ClimaComms]] deps = ["CUDA", "MPI"] git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" @@ -269,15 +292,19 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] +deps = ["UUIDs"] git-tree-sha1 = "5ce999a19f4ca23ea484e92a1774a61b8ca4cf8e" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.8.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.1+0" +version = "1.0.5+0" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] @@ -296,6 +323,11 @@ deps = ["LinearAlgebra"] git-tree-sha1 = "fe2838a593b5f776e1597e086dcd47560d94e816" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.5.3" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -341,10 +373,14 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DelaunayTriangulation]] -deps = ["DataStructures", "EnumX", "ExactPredicates", "MakieCore", "Random", "SimpleGraphs"] +deps = ["DataStructures", "EnumX", "ExactPredicates", "Random", "SimpleGraphs"] git-tree-sha1 = "a1d8532de83f8ce964235eff1edeff9581144d02" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" version = "0.7.2" +weakdeps = ["MakieCore"] + + [deps.DelaunayTriangulation.extensions] + DelaunayTriangulationMakieCoreExt = "MakieCore" [[deps.Deno_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -352,18 +388,34 @@ git-tree-sha1 = "cd6756e833c377e0ce9cd63fb97689a255f12323" uuid = "04572ae6-984a-583e-9378-9577a1c2574d" version = "1.33.4+0" -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] git-tree-sha1 = "c5692436e7f8279503466db216c74165d1b301e4" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" version = "6.127.0" + [deps.DiffEqBase.extensions] + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + DiffEqBaseZygoteExt = "Zygote" + + [deps.DiffEqBase.weakdeps] + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -381,11 +433,19 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" version = "0.25.98" + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -504,11 +564,21 @@ uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" version = "1.5.0" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" version = "2.21.1" + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" @@ -528,10 +598,14 @@ uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" [[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" version = "0.10.35" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType]] deps = ["CEnum", "FreeType2_jll"] @@ -810,16 +884,14 @@ uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" version = "0.20.9" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] +deps = ["Dates", "Random"] git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.7" +weakdeps = ["Statistics"] -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -884,6 +956,12 @@ git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" version = "0.9.8" + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" @@ -1035,7 +1113,7 @@ uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" version = "7.2.0" [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearAlgebraX]] @@ -1045,11 +1123,21 @@ uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88" version = "0.1.12" [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.24" + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -1071,6 +1159,14 @@ git-tree-sha1 = "49579593ac2c5f9213c61eead3e39606d22a2a04" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" version = "0.20.13" + [deps.MPI.extensions] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + + [deps.MPI.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" @@ -1141,7 +1237,7 @@ version = "1.1.7" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.0+0" +version = "2.28.2+0" [[deps.MeshIO]] deps = ["ColorTypes", "FileIO", "GeometryBasics", "Printf"] @@ -1183,7 +1279,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.2.1" +version = "2022.10.11" [[deps.MsgPack]] deps = ["Serialization"] @@ -1201,12 +1297,6 @@ git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" version = "0.4.4" -[[deps.MutableArithmetics]] -deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "964cb1a7069723727025ae295408747a0b36a854" -uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.3.0" - [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" @@ -1249,7 +1339,7 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.20+0" +version = "0.3.21+4" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1312,7 +1402,7 @@ version = "1.6.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" +version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1369,9 +1459,9 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.42.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.8.0" +version = "1.9.2" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1403,11 +1493,21 @@ uuid = "647866c9-e3ac-4575-94e7-e3d426903924" version = "0.1.2" [[deps.Polynomials]] -deps = ["ChainRulesCore", "LinearAlgebra", "MakieCore", "MutableArithmetics", "RecipesBase"] +deps = ["LinearAlgebra", "RecipesBase"] git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "3.2.13" + [deps.Polynomials.extensions] + PolynomialsChainRulesCoreExt = "ChainRulesCore" + PolynomialsMakieCoreExt = "MakieCore" + PolynomialsMutableArithmeticsExt = "MutableArithmetics" + + [deps.Polynomials.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" + MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" + [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -1420,6 +1520,12 @@ git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" version = "0.4.12" + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" @@ -1502,6 +1608,10 @@ deps = ["Requires"] git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1515,6 +1625,16 @@ git-tree-sha1 = "7ed35fb5f831aaf09c2d7c8736d44667a1afdcb0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" version = "2.38.7" + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -1711,14 +1831,18 @@ uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.1.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.3.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.StableHashTraits]] deps = ["CRC32c", "Compat", "Dates", "SHA", "Tables", "TupleTools", "UUIDs"] @@ -1743,12 +1867,21 @@ deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "Snoo git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.4.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] +deps = ["LinearAlgebra", "Random", "StaticArraysCore"] git-tree-sha1 = "9cabadf6e7cd2349b6cf49f1915ad2028d65e881" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.6.2" +weakdeps = ["Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" @@ -1758,6 +1891,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.9.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1772,11 +1906,19 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.0" [[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.3.0" + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" @@ -1799,6 +1941,11 @@ version = "1.10.0" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "5.10.1+6" + [[deps.SymbolicIndexingInterface]] deps = ["DocStringExtensions"] git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" @@ -1808,7 +1955,7 @@ version = "0.2.2" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.0" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1825,13 +1972,17 @@ version = "1.10.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.1" +version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] git-tree-sha1 = "50718b4fc1ce20cecf28d85215028c78b4d875c2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" version = "0.15.2" +weakdeps = ["IntervalArithmetic"] + + [deps.TaylorSeries.extensions] + TaylorSeriesIAExt = "IntervalArithmetic" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -2062,7 +2213,7 @@ version = "4.3.4+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.12+3" +version = "1.2.13+0" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2101,9 +2252,9 @@ uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.8.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/lib/ClimaCorePlots/README.md b/lib/ClimaCorePlots/README.md index 110a40ae1b..c00f638bc3 100644 --- a/lib/ClimaCorePlots/README.md +++ b/lib/ClimaCorePlots/README.md @@ -17,8 +17,8 @@ You can now use ClimaCorePlots in your ClimaCore pkg environment: To visualize a ClimaCore object, you fist need to install a [Plots.jl backend](http://docs.juliaplots.org/latest/backends/#backends): - (@v1.8) pkg> add Plots # (default GR backend) - (@v1.8) pkg> add Plots, PlotlyJS + (@v1.9) pkg> add Plots # (default GR backend) + (@v1.9) pkg> add Plots, PlotlyJS Then load in the backend: diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 6ff30edaeb..3b28db8878 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.5" +julia_version = "1.9.2" manifest_format = "2.0" project_hash = "b150d4b1fb060f278cb0f609945b72ecb736cb1d" @@ -16,10 +16,15 @@ uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" version = "0.5.1" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] +deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -31,6 +36,10 @@ deps = ["LinearAlgebra", "Requires"] git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.6.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" @@ -48,6 +57,22 @@ git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.4.11" + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" @@ -171,24 +196,12 @@ git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.16.1+1" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.16.0" -[[deps.ChangesOfVariables]] -deps = ["InverseFunctions", "LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" - [[deps.ClimaComms]] deps = ["CUDA", "MPI"] git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" @@ -260,6 +273,10 @@ deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statist git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] @@ -285,15 +302,19 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] +deps = ["UUIDs"] git-tree-sha1 = "5ce999a19f4ca23ea484e92a1774a61b8ca4cf8e" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.8.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.1+0" +version = "1.0.5+0" [[deps.CompositeTypes]] git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638" @@ -311,6 +332,11 @@ deps = ["LinearAlgebra"] git-tree-sha1 = "fe2838a593b5f776e1597e086dcd47560d94e816" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.5.3" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -373,26 +399,48 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DelimitedFiles]] deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" +version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] git-tree-sha1 = "c5692436e7f8279503466db216c74165d1b301e4" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" version = "6.127.0" + [deps.DiffEqBase.extensions] + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + DiffEqBaseZygoteExt = "Zygote" + + [deps.DiffEqBase.weakdeps] + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] git-tree-sha1 = "303ab70e4524843653e55e16a3dc7b75e677a3dd" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" version = "2.27.0" + [deps.DiffEqCallbacks.weakdeps] + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" + [[deps.DiffEqOperators]] deps = ["BandedMatrices", "BlockBandedMatrices", "DiffEqBase", "DomainSets", "ForwardDiff", "LazyArrays", "LazyBandedMatrices", "LinearAlgebra", "LoopVectorization", "NNlib", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "SuiteSparse"] git-tree-sha1 = "ef0f24d69406bf85092c843691ab2ae3b2e34b77" @@ -412,21 +460,19 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.9" +weakdeps = ["SparseArrays"] + + [deps.Distances.extensions] + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" -[[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.98" - [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -444,12 +490,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.Elliptic]] git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" uuid = "b305315f-e792-5b7a-8f41-49f472929428" @@ -540,10 +580,16 @@ uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" version = "0.13.11" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" version = "2.21.1" +weakdeps = ["BandedMatrices", "BlockBandedMatrices", "StaticArrays"] + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -576,10 +622,14 @@ uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" [[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" version = "0.10.35" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -726,12 +776,6 @@ git-tree-sha1 = "d38bd0d9759e3c6cfa19bdccc314eccf8ce596cc" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.15" -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -758,16 +802,14 @@ deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] +deps = ["Dates", "Random"] git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.7" +weakdeps = ["Statistics"] -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -787,9 +829,9 @@ version = "1.0.0" [[deps.JET]] deps = ["InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Revise", "Test"] -git-tree-sha1 = "37fa60fb1e2571f4038df7933b354f8cd63b9609" +git-tree-sha1 = "a7b9e0e3f61590a90a30fb7f28ffa19d065b4634" uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" -version = "0.7.14" +version = "0.8.9" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] @@ -850,6 +892,12 @@ git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" version = "0.9.8" + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] git-tree-sha1 = "6dc4ad9cd74ad4ca0a8e219e945dbd22039f2125" @@ -915,6 +963,14 @@ git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.16.1" + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" @@ -1032,7 +1088,7 @@ uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" version = "7.2.0" [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] @@ -1047,12 +1103,28 @@ git-tree-sha1 = "4a4f8cc7a59fadbb02d1852d1e0cef5dca3a9460" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" version = "1.42.0" + [deps.LinearSolve.extensions] + LinearSolveHYPRE = "HYPRE" + + [deps.LinearSolve.weakdeps] + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.24" + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -1063,10 +1135,15 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.0" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" version = "0.12.165" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] @@ -1086,6 +1163,14 @@ git-tree-sha1 = "1ccbd6980b4ff1e1e411086d01696048e6013653" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" version = "0.20.10" + [deps.MPI.extensions] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + + [deps.MPI.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" @@ -1134,7 +1219,7 @@ version = "1.1.7" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.0+0" +version = "2.28.2+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1158,7 +1243,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.2.1" +version = "2022.10.11" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1189,6 +1274,12 @@ git-tree-sha1 = "72240e3f5ca031937bd536182cb2c031da5f46dd" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" version = "0.8.21" + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] git-tree-sha1 = "c1bfdab07fa259baa4604a05862c43004dd3cd45" @@ -1237,14 +1328,14 @@ version = "1.3.5+1" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c6c2ed4b7acd2137b878eb96c68e63b76199d0f" +git-tree-sha1 = "2fb9ee2dc14d555a6df2a714b86b7125178344c2" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.17+0" +version = "0.3.21+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.20+0" +version = "0.3.21+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1295,13 +1386,7 @@ version = "6.51.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.17" +version = "10.42.0+0" [[deps.PProf]] deps = ["AbstractTrees", "EnumX", "FlameGraphs", "Libdl", "OrderedCollections", "Profile", "ProgressMeter", "ProtoBuf", "pprof_jll"] @@ -1310,10 +1395,10 @@ uuid = "e4faabce-9ead-11e9-39d9-4379958e3056" version = "2.3.0" [[deps.PackageExtensionCompat]] -deps = ["Requires", "TOML"] git-tree-sha1 = "32f3d52212a8d1c5d589a58851b1f04c97339110" uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" version = "1.0.0" +weakdeps = ["Requires", "TOML"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1345,9 +1430,9 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.42.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.8.0" +version = "1.9.2" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1373,6 +1458,20 @@ git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" version = "1.38.17" + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] git-tree-sha1 = "3d811babe092a6e7b130beee84998fe7663348b6" @@ -1391,6 +1490,12 @@ git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" version = "0.4.12" + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" @@ -1497,6 +1602,16 @@ git-tree-sha1 = "7ed35fb5f831aaf09c2d7c8736d44667a1afdcb0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" version = "2.38.7" + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] git-tree-sha1 = "9088515ad915c99026beb5436d0a09cd8c18163e" @@ -1532,18 +1647,6 @@ git-tree-sha1 = "1e597b93700fa4045d7189afa7c004e0584ea548" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" version = "3.5.3" -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - [[deps.RootSolvers]] deps = ["DocStringExtensions", "ForwardDiff"] git-tree-sha1 = "9fb3462240d2898be5d4acf8925e47f70ec64d07" @@ -1621,9 +1724,13 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "91fcc402c4ab978ad5759489db9a9c5a71732f2d" +git-tree-sha1 = "20aa9831d654bab67ed561e78917047143ecb9bf" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.18" +version = "0.1.19" +weakdeps = ["NNlib"] + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveNNlibExt = "NNlib" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1664,7 +1771,7 @@ uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.1.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] @@ -1680,10 +1787,14 @@ uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" version = "0.3.9" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.3.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.Static]] deps = ["IfElse"] @@ -1696,12 +1807,21 @@ deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "Snoo git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.4.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] +deps = ["LinearAlgebra", "Random", "StaticArraysCore"] git-tree-sha1 = "9cabadf6e7cd2349b6cf49f1915ad2028d65e881" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.6.2" +weakdeps = ["Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" @@ -1711,6 +1831,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.9.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1724,12 +1845,6 @@ git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.0" -[[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" - [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" @@ -1754,7 +1869,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+0" +version = "5.10.1+6" [[deps.SymbolicIndexingInterface]] deps = ["DocStringExtensions"] @@ -1765,7 +1880,7 @@ version = "0.2.2" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.0" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1782,7 +1897,7 @@ version = "1.10.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.1" +version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] @@ -1790,6 +1905,12 @@ git-tree-sha1 = "50718b4fc1ce20cecf28d85215028c78b4d875c2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" version = "0.15.2" + [deps.TaylorSeries.extensions] + TaylorSeriesIAExt = "IntervalArithmetic" + + [deps.TaylorSeries.weakdeps] + IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" + [[deps.TempestRemap_jll]] deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll", "Pkg"] git-tree-sha1 = "88c3818a492ad1a94b1aa440b01eab5d133209ff" @@ -1882,11 +2003,19 @@ uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.Unitful]] -deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"] +deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "786e80c8ae3ed0c69b2e9799dac321d2cdbccd89" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.16.0" + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + + [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" @@ -2103,7 +2232,7 @@ version = "0.4.9" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.12+3" +version = "1.2.13+0" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2136,9 +2265,9 @@ uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.8.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/src/DataLayouts/DataLayouts.jl b/src/DataLayouts/DataLayouts.jl index 0071b708ec..ebda6430e6 100644 --- a/src/DataLayouts/DataLayouts.jl +++ b/src/DataLayouts/DataLayouts.jl @@ -207,7 +207,7 @@ end ) where {S, Nij, Nk, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(IJKFVH{$SS, $Nij, $Nk}( @@ -337,7 +337,7 @@ Base.length(data::IJFH) = size(parent(data), 4) ) where {S, Nij, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(IJFH{$SS, $Nij}( @@ -473,7 +473,7 @@ Base.@propagate_inbounds column(data::IFH{S, Ni}, i, j, h) where {S, Ni} = ) where {S, Ni, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(IFH{$SS, $Ni}( @@ -581,7 +581,7 @@ end ) where {S, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(DataF{$SS}(@inbounds view(parent(data), $field_byterange))) @@ -699,7 +699,7 @@ end ) where {S, Nij, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(IJF{$SS, $Nij}( @@ -832,7 +832,7 @@ end ) where {S, Ni, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(IF{$SS, $Ni}(@inbounds view(parent(data), :, $field_byterange))) @@ -934,21 +934,14 @@ end @generated function _property_view(data::VF{S, A}, ::Val{Idx}) where {S, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(VF{$SS}(@inbounds view(parent(data), :, $field_byterange))) end -@inline function Base.getproperty(data::VF{S}, i::Integer) where {S} - array = parent(data) - T = eltype(array) - SS = fieldtype(S, i) - offset = fieldtypeoffset(T, S, i) - nbytes = typesize(T, SS) - dataview = @inbounds view(array, :, (offset + 1):(offset + nbytes)) - VF{SS}(dataview) -end +Base.@propagate_inbounds Base.getproperty(data::VF, i::Integer) = + _property_view(data, Val(i)) @inline function Base.getindex(data::VF{S}, v::Integer) where {S} @boundscheck 1 <= v <= size(parent(data), 1) || @@ -1059,7 +1052,7 @@ end ) where {S, Nij, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(VIJFH{$SS, $Nij}( @@ -1233,7 +1226,7 @@ end ) where {S, Ni, A, Idx} SS = fieldtype(S, Idx) T = eltype(A) - offset = fieldtypeoffset(T, S, Idx) + offset = fieldtypeoffset(T, S, Val(Idx)) nbytes = typesize(T, SS) field_byterange = (offset + 1):(offset + nbytes) return :(VIFH{$SS, $Ni}( diff --git a/src/DataLayouts/struct.jl b/src/DataLayouts/struct.jl index 6ced43b11f..c20b580734 100644 --- a/src/DataLayouts/struct.jl +++ b/src/DataLayouts/struct.jl @@ -144,6 +144,14 @@ Similar to `fieldoffset(S,i)`, but gives result in multiples of `sizeof(T)` inst fieldtypeoffset(::Type{T}, ::Type{S}, i) where {T, S} = Int(div(fieldoffset(S, i), sizeof(T))) +@generated function fieldtypeoffset( + ::Type{T}, + ::Type{S}, + ::Val{i}, +) where {T, S, i} + return :(Int(div(fieldoffset(S, i), sizeof(T)))) +end + """ typesize(T,S) @@ -179,7 +187,11 @@ Base.@propagate_inbounds @generated function get_struct( array, fieldtype(S, $i), Val($D), - offset_index(start_index, Val($D), fieldtypeoffset(T, S, $i)), + offset_index( + start_index, + Val($D), + $(fieldtypeoffset(T, S, Val(i))), + ), )), ) end @@ -228,7 +240,7 @@ Base.@propagate_inbounds @generated function set_struct!( array, getfield(val, $i), Val($D), - offset_index(start_index, Val($D), fieldtypeoffset(T, S, $i)), + offset_index(start_index, Val($D), $(fieldtypeoffset(T, S, i))), )), ) end diff --git a/test/Operators/finitedifference/opt.jl b/test/Operators/finitedifference/opt.jl index 86f5f2f9ae..a1046e29ef 100644 --- a/test/Operators/finitedifference/opt.jl +++ b/test/Operators/finitedifference/opt.jl @@ -225,7 +225,7 @@ end center_values = ones(FT, center_space) center_velocities = Geometry.WVector.(center_values) - filter(@nospecialize(ft)) = ft !== typeof(Base.mapreduce_empty) + filter(@nospecialize f) = f !== Base.mapreduce_empty # face space operators @test_opt function_filter = filter sum(ones(FT, face_space)) diff --git a/test/Operators/hybrid/opt.jl b/test/Operators/hybrid/opt.jl index 253fe4925e..3955cf8066 100644 --- a/test/Operators/hybrid/opt.jl +++ b/test/Operators/hybrid/opt.jl @@ -256,7 +256,7 @@ end center_values = ones(FT, center_space) center_velocities = Geometry.WVector.(center_values) - filter(@nospecialize(ft)) = ft !== typeof(Base.mapreduce_empty) + filter(@nospecialize f) = f !== Base.mapreduce_empty # face space operators @test_opt function_filter = filter sum(ones(FT, face_space)) diff --git a/test/Operators/spectralelement/opt.jl b/test/Operators/spectralelement/opt.jl index cff2977628..a1d7b30b0a 100644 --- a/test/Operators/spectralelement/opt.jl +++ b/test/Operators/spectralelement/opt.jl @@ -99,7 +99,7 @@ end @static if @isdefined(var"@test_opt") - filter(@nospecialize(ft)) = ft !== typeof(Base.mapreduce_empty) + filter(@nospecialize f) = f !== Base.mapreduce_empty function test_operators(field, vfield) @test_opt opt_Gradient(field)