diff --git a/CHANGELOG.md b/CHANGELOG.md index 2cbfb6e7..4a8a10b6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,7 @@ +## [unreleased] +### Added +- Improve report explanation to better interpret average coverage and coverage completeness stats shown on the coverage report + ## [1.9] ### Added - Condensed `/coverage/d4/genes/summary` for condensed stats over a gene list diff --git a/src/chanjo2/templates/report.html b/src/chanjo2/templates/report.html index 8081749a..df48f9bc 100644 --- a/src/chanjo2/templates/report.html +++ b/src/chanjo2/templates/report.html @@ -179,10 +179,16 @@

General

{% endif %} +

+ Average coverage: + defined as the mean coverage over a list of genes. Values were calculated as the mean of coverage values over single genes or intervals (transcripts or exons) from single genes + e.g. 38.24 +

+

Completeness: defined as the ratio of bases - sequenced deeper than a specified cutoff + sequenced deeper than a specified cutoff. Values were calculated across pooled genes or genes' intervals, according to the sequencing technology used e.g. 10x