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Rett_standard_ITPC

codes for analyzing ITPC in Tufi et al Rett paper The codes here are for the analysis of ITPC data in two different ways: 1. for each frequency in the range, collapsed across all time points 2. for each frequency and time points. the coes in the order of execution are:

  1. Main_Rett: creates the data structure that is used for the analysis, from the individual subject epoched structures.
  2. PL_rett: either run after Main_Rett or upload AllData. Calculates ITPC across time points.
  3. timeFreq_Rett: either run after Main_Rett or upload AllData. Calculates ITPC frequency-time ITPC maps
  4. it_plotSmoothTFR_rett: plot any ITPC data on 3d image.

Other functions:

  1. All_Data_ds: downsampling the AllData structure, for the time-frequency ITPC.
  2. FDR_clusBased_permuTest: runs cluster-based permutation test and plot in transparent/bold colors for pre-post correction, respectively.
  3. basewave4: compute the time-frequency representation with Morlet wavelet (written/editted by Peter Lakatos).