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DESCRIPTION
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DESCRIPTION
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Package: adnuts
Title: No-U-Turn MCMC Sampling for 'ADMB' Models
Version: 1.1.2
Authors@R: person("Cole", "Monnahan", email = "monnahc@uw.edu", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-0871-6700"))
Description: Bayesian inference using the no-U-turn (NUTS) algorithm by
Hoffman and Gelman (2014) <https://www.jmlr.org/papers/v15/hoffman14a.html>.
Designed for 'AD Model Builder' ('ADMB') models,
or when R functions for log-density and log-density gradient
are available, such as 'Template Model Builder'
models and other special cases. Functionality is similar to 'Stan',
and the 'rstan' and 'shinystan' packages are used for diagnostics and
inference.
Depends:
R (>= 3.6.0),
snowfall (>= 1.84.6.1)
URL: https://github.com/Cole-Monnahan-NOAA/adnuts
BugReports: https://github.com/Cole-Monnahan-NOAA/adnuts/issues
License: GPL-3 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
ByteCompile: true
Suggests:
shinystan (>= 2.5.0),
matrixcalc (>= 1.0.3),
stats,
knitr,
TMB,
rmarkdown,
withr,
testthat (>= 2.1.0)
Imports: ellipse, rstan, R2admb, ggplot2, rlang
VignetteBuilder: knitr