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NEWS
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NEWS
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CHANGES IN VERSION 1.8.01
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o Fix error when bedgraph contains duplicated loci.
CHANGES IN VERSION 1.8.0
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o No new changes
CHANGES IN VERSION 1.6.0
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o No new changes
CHANGES IN VERSION 1.4.07
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o Fix bug when exporting bsseq objects from methrix objects created using Methyldackel pipeline. Issue: #26
CHANGES IN VERSION 1.4.05
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o rotate x axis labels by 45 degrees in report
o update `methrix_pca()` screeplot
o added CITATION
CHANGES IN VERSION 1.4.00 (Bioconductor version)
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o read_bedgraphs() supports bedgraphs files from "Bismark_cov", "MethylDackel", "MethylcTools", "BisSNP", "BSseeker2_CGmap"
o write_bedgraphs() supports output to multiBed and metilene file formats
o write_bigwigs() exports methrix object as bigWigs
CHANGES IN VERSION 1.2.10
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o BSgenome ref build parsing error. Issue: #24
o Show which CpGs are missing when loading bedGraphs. Issue: #22
o Faster HDF5 processing. PR: #21
o include SeqStyle option in Manual write_bedgraphs() function. PE: #20
o added the argument for SeqlevelsStyle and trackline in bedgraph. PR: #19
CHANGES IN VERSION 1.2.06
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o Fix BioC warnings.
CHANGES IN VERSION 1.2.05
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o Methrix plot typo fix. Issue: #20
CHANGES IN VERSION 1.0.05
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o Bugfixes in methrix report. Issue: #12
o Bugfixes in the coverge_filter function --> the output methrix is now sorted
o Bugfixes in the subset_methrix function --> works on unsorted methrix
o Bugfixes in read_bedgraphs function --> when all fields are present, parse_source_idx did not return M and U columns
o Added group option to coverage_filter
o Added prefix option to methrix_report
o Added keep option to snp_removal
o minor changes in plotting functions
CHANGES IN VERSION 0.99.0
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o Submission to Bioconductor