From 46c4ea193f71b8c2b5efcccded1d4cd176f49506 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Melissa=20May=C3=A9n?= <61039340+Melii99@users.noreply.github.com> Date: Fri, 22 Sep 2023 09:53:01 -0600 Subject: [PATCH] Update 05-control_calidad.R Arreglar typo (pbmc) --- 05-control_calidad.R | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/05-control_calidad.R b/05-control_calidad.R index dbec4c5..ea05b3a 100644 --- a/05-control_calidad.R +++ b/05-control_calidad.R @@ -322,12 +322,12 @@ col = "grey80" ## ----pbmc_chrMT_ayuda------------------------------------------------------------------------------- sce.pbmc <- sce.pbmc[, which(e.out$FDR <= 0.001)] is.mito <- grep("^MT-", rowData(sce.pbmc)$Symbol) -sce.pmbc <- addPerCellQC(sce.pbmc, subsets = list(MT = is.mito)) +sce.pbmc <- addPerCellQC(sce.pbmc, subsets = list(MT = is.mito)) discard.mito <- - isOutlier(sce.pmbc$subsets_MT_percent, type = "higher") + isOutlier(sce.pbmc$subsets_MT_percent, type = "higher") plot( - sce.pmbc$sum, - sce.pmbc$subsets_MT_percent, + sce.pbmc$sum, + sce.pbmc$subsets_MT_percent, log = "x", xlab = "Total count", ylab = "Mitochondrial %"