README.md

Latin American R/BioConductor Developers Workshop 2018

July 30 - August 3, 2018. Cuernavaca

Welcome to the repository for the 2018 R/Bioconductor developers workshop. CDSB will be hosting its first workshop focused on R developers in Cuernavaca, Morelos, Mexico.

• Please post ideas for projects, ways to grow the CDSB community and feedback as issues.

Materials

The materials are organized by instructor in order of first appearance. For the full schedule, check the main website.

• Alejandro Reyes
  • Welcome: slides.
• Leonardo Collado-Torres:
  • Keynote I: slides.
• Daniel Piñero
  • In replacement of Alicia Mastretta Yanes. Talk TBD.
• Alejandra Medina-Rivera, Alejandro Reyes
  • Programming with R - functions git repo.
  • Creating a package git repo package
• Selene Fernandez-Valverde
  • Version control with git and GitHub: git repo
  • Open source software projects and collaborative development: git repo
• Martin Morgan
  • Keynote Lecture II:
  • Best practices for writing efficient functions:
  • S4 - system for object oriented programming:
  • Unit testing and R CMD check:
  • Debugging and Parallelization:
  • git repo
• Alejandro Ponce-Mendoza
  • Using R-Shiny in Agrobiodiversity: git repo, shiny slides.
• Benilton Carvalho
  • Bioconductor: core package, common objects and extending classes.
  • Vignette writing with markdown/BiocStyle.
  • Rcpp (Adding C/C++ code to R packages).
  • Keynote Lecture IV.
  • slides
• Teresa Ortíz
  • RLadies Community Experience: slides, R file, slides raw.

Installation instructions

1. Install R 3.5 through CRAN
2. Install the latest stable Rstudio Desktop
3. Install the latest stable git
4. Connect Rstudio with git
5. Install the following R packages: devtools, roxygen2, Rcpp, RcppArmadillo, knitr using the install.packages() function. You can also check https://www.bioconductor.org/install/ for more information.

Code of conduct

To ensure a safe, enjoyable, and friendly experience for everyone who participates, we have a code of conduct. This applies to people attending in person or remotely, and for interacting over the issues.

Support

This meeting is made possible by generous support from:

• SoIBio
• CCG-UNAM
• LCG-UNAM
• LIIGH-UNAM
• RConsortium

This README was based on the rOpenSci unconf18 README.