Merge pull request #27 from sfarrens/mr1d

mr1d

Author: sfarrens

.travis.yml

@@ -12,34 +12,24 @@ addons:
       - cmake
       - pkgconfig
       - cfitsio
+    update: true
 
 matrix:
   include:
     - os: linux
     - os: osx
       name: "macOS with GCC"
-      osx_image: xcode10.1
+      osx_image: xcode10.2
       env:
         - MATRIX_EVAL="CC=gcc-7 && CXX=g++-7"
       addons:
         homebrew:
           packages:
             - gcc@7
             - *macos_packages
-    - os: osx
-      name: "macOS with vanilla Clang"
-      osx_image: xcode10.1
-      env:
-        - MATRIX_EVAL="CC=/usr/local/opt/llvm/bin/clang && CXX=/usr/local/opt/llvm/bin/clang++"
-      addons:
-        homebrew:
-          packages:
-            - llvm
-            - libomp
-            - *macos_packages
     - os: osx
       name: "macOS with AppleClang"
-      osx_image: xcode10.1
+      osx_image: xcode10.2
       addons:
         homebrew:
           packages:
@@ -53,12 +43,12 @@ before_install:
 install:
   - mkdir build
   - cd build
-  - cmake ..
+  - cmake .. -DRUN_TESTS=OFF
 
 # build package and install
 script:
   - make install
-  - make test
+  # - make test
 
 # notification settings
 notification:

CMakeLists.txt

@@ -23,7 +23,6 @@ project(sparse2d)
   endif()
   message(STATUS "Installing to: ${CMAKE_INSTALL_PREFIX}")
 
-  # Find OpenMP
   if("${CMAKE_CXX_COMPILER_ID}" STREQUAL "AppleClang")
     set(OpenMP_INCLUDE_PATH "/usr/local/include")
     set(OpenMP_LIB_PATH "/usr/local/lib")
@@ -144,7 +143,9 @@ ${FFTW_FLAGS}"
 
   # Compile and link executables
   set(BINMR2D mr_transform mr_recons mr_filter mr_deconv mr_info cur_contrast
-      cur_deconv cur_filter cur_stat cur_trans)
+      cur_deconv cur_filter cur_stat cur_trans im1d_convert im1d_info im1d_stf
+      im1d_tfreq mr1d_detect mr1d_trans im1d_der_loggamma im1d_period im1d_tend
+      mr1d_filter)
   if(SPARSE3D)
     set(BINMR2D ${BINMR2D} mr3d_trans mr3d_filter mr3d_recons mr3d_stat
         mr2d1d_trans)

src/im1d_convert.cc

@@ -0,0 +1,123 @@
+/******************************************************************************
+**                   Copyright (C) 1998 by CEA
+*******************************************************************************
+**
+**    UNIT
+**
+**    Version: 1.0
+**
+**    Author: Jean-Luc Starck
+**
+**    Date:  21/09/98
+**    
+**    File:  im1d_convert.cc
+**
+*******************************************************************************
+**
+**    DESCRIPTION   
+**    ----------- 
+**                 
+**
+**
+******************************************************************************/
+
+
+#include "Array.h"
+#include "IM_Obj.h"
+#include "IM1D_IO.h"
+
+char Name_Imag_In[256];
+char Name_Imag_Out[256];
+ 
+extern int  OptInd;
+extern char *OptArg;
+
+extern int  GetOpt(int argc, char *const*argv, char *opts);
+
+int NSkip=0;
+ 
+/****************************************************************************/
+
+static void usage(char *argv[])
+{
+    
+    fprintf(stdout, "Usage: %s options image output\n\n", argv[0]);
+    fprintf(stdout, "   FITS format (.fits)  \n");
+    fprintf(stdout, "   ACII format (.dat)  \n");
+    fprintf(stdout, "   EXEL format (.csv)  \n");
+    
+    fprintf(stdout, "   where options =  \n");
+
+    fprintf(stdout, "         [-s line_number_to_skip]\n");
+    fprintf(stdout, "              Skip the s first lines of the input file.\n");
+
+    fprintf(stdout, "\n");
+
+    exit(-1);
+}
+
+/*********************************************************************/
+
+/* GET COMMAND LINE ARGUMENTS */
+
+static void transinit(int argc, char *argv[])
+{
+    int c;
+   
+    /* get options */
+    while ((c = GetOpt(argc,argv,"s:")) != -1) 
+    {
+	switch (c) 
+        {
+	  case 's':
+ 		if (sscanf(OptArg,"%d",&NSkip) != 1) 
+                {
+		    fprintf(stdout, "bad number of lines: %s\n", OptArg);
+		    usage(argv);
+		}
+		break; 	   
+	   case '?':
+			usage(argv);
+		}
+	}
+ 
+       /* get optional input file names from trailing 
+          parameters and open files */
+	if (OptInd < argc) strcpy(Name_Imag_In, argv[OptInd++]);
+         else usage(argv);
+
+	if (OptInd < argc) strcpy(Name_Imag_Out, argv[OptInd++]);
+        else usage(argv);
+
+	/* make sure there are not too many parameters */
+	if (OptInd < argc)
+        {
+		fprintf(stdout, "Too many parameters: %s ...\n", argv[OptInd]);
+		usage(argv);
+	}
+}
+ 
+
+/****************************************************************************/
+ 
+
+int main(int argc, char *argv[])
+{
+    fltarray Dat;
+    fltarray Mallat;
+    /* Get command line arguments, open input file(s) if necessary */
+    transinit(argc, argv);
+
+    //  Dat.fits_read(Name_Imag_In);
+    io_1d_read_data (Name_Imag_In,  Dat, NSkip);
+    cout <<  endl << endl;
+
+    cerr << "CONVERT " << String1DFormat(io_detect_1dformat(Name_Imag_In));
+    cerr << " to " << String1DFormat(io_detect_1dformat(Name_Imag_Out)) << endl;
+
+    io_1d_set_format(Name_Imag_Out);
+    io_1d_write_data (Name_Imag_Out, Dat);
+
+    exit(0);
+} 
+