diff --git a/README.md b/README.md index 5b223f1..b0afc7d 100644 --- a/README.md +++ b/README.md @@ -21,8 +21,9 @@ To run a pipeline, first navigate to [Reads2Map releases page](https://github.co Check the description of the inputs for the pipelines: -* [EmpiricalReads2Map (EmpiricalSNPCalling and EmpiricalMaps)](https://cristianetaniguti.github.io/Tutorials/Read2Map/EmpiricalReads2Map.html) -* [SimulatedReads](https://cristianetaniguti.github.io/Tutorials/Reads2Map/SimulatedReads.html) +* [EmpiricalReads2Map (EmpiricalSNPCalling and EmpiricalMaps)](https://cristianetaniguti.github.io/Tutorials/Reads2Map/EmpiricalReads.html) + +* [SimulatedReads](https://cristianetaniguti.github.io/Tutorials/Reads2Map/simulatedreads.html) Check how to evaluate the workflows results in Reads2MapApp Shiny: @@ -30,11 +31,11 @@ Check how to evaluate the workflows results in Reads2MapApp Shiny: Once you selected the best pipeline using a subset of your data, you can build a complete high-density linkage map: -* [Quick Guide to build High-Density Linkage Maps](https://cristianetaniguti.github.io/Tutorials/onemap/High_density_maps.html) +* [Quick Guide to build High-Density Linkage Maps](https://cristianetaniguti.github.io/Tutorials/onemap/Quick_HighDens/High_density_maps.html) -Check more information and example of usage in: +Check more information and examples of usage in: -* [Paper in preparation]() +* [Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Mollinari, M., Da, G., Pereira, S., Riera-Lizarazu, O., Lau, J., Byrne, D., de Siqueira Gesteira, G., De, T., Oliveira, P., Ferreira, G. C., & Franco Garcia, A. A. Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks. BioRxiv. https://doi.org/10.1101/2022.11.24.517847](https://www.biorxiv.org/content/10.1101/2022.11.24.517847v1) ## Third-party software and images