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make haplotype a separate class

Status: Open.

#174 In DEploid-dev/DEploid;

· shajoezhu opened on Jan 20, 2017

give options to generate output files, this is an issue in R version, as it generate output to files. let user to choose, add a flag

enhancement

Status: Open.

#228 In DEploid-dev/DEploid;

· shajoezhu opened on Jul 20, 2017

allow missing site in the reference strain

low priority

Status: Open.

#78 In DEploid-dev/DEploid;

· shajoezhu opened on May 24, 2016

exclude sites when not sorted

low priority

Status: Open.

#56 In DEploid-dev/DEploid;

· shajoezhu opened on Mar 11, 2016