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Does fuzzysplit work with degenerate sequences? #3

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iquasere opened this issue Mar 9, 2022 · 2 comments
Open

Does fuzzysplit work with degenerate sequences? #3

iquasere opened this issue Mar 9, 2022 · 2 comments

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@iquasere
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iquasere commented Mar 9, 2022 •
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Hi there! Amazing tool you have here!

Trying to use fuzzysplit.jar to split sequences based on some degenerate primers, does it recognize bases such as K or Y?
@tiagobrc
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I am also interested in knowing this =)

@Daniel-Liu-c0deb0t
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Daniel-Liu-c0deb0t commented Oct 30, 2022 •
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You will need to specify character mappings by specifying the pattern_wildcard parameter (more details here: https://github.com/Daniel-Liu-c0deb0t/Java-Fuzzy-Search#pattern-types-and-their-parameters) and give it the name of a list file with the mappings. More details on list files: https://github.com/Daniel-Liu-c0deb0t/Java-Fuzzy-Search#list-files.

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@Daniel-Liu-c0deb0t @tiagobrc @iquasere