diff --git a/src/azul/plugins/metadata/hca/bundle.py b/src/azul/plugins/metadata/hca/bundle.py index 6af8e81fd..1bdb4597c 100644 --- a/src/azul/plugins/metadata/hca/bundle.py +++ b/src/azul/plugins/metadata/hca/bundle.py @@ -15,7 +15,6 @@ from azul.types import ( JSON, MutableJSON, - MutableJSONs, ) log = logging.getLogger(__name__) @@ -23,7 +22,7 @@ @attrs.define(kw_only=True) class HCABundle(Bundle[BUNDLE_FQID], ABC): - manifest: MutableJSONs + manifest: MutableJSON """ Each item of the `manifest` attribute's value has this shape: { @@ -62,7 +61,7 @@ def from_json(cls, fqid: BUNDLE_FQID, json_: JSON) -> 'Bundle': metadata = json_['metadata'] links = json_['links'] stitched = json_['stitched'] - assert isinstance(manifest, list), manifest + assert isinstance(manifest, dict), manifest assert isinstance(metadata, dict), metadata assert isinstance(links, dict), links assert isinstance(stitched, list), stitched diff --git a/src/azul/plugins/repository/dss/__init__.py b/src/azul/plugins/repository/dss/__init__.py index f250d46a5..43948604a 100644 --- a/src/azul/plugins/repository/dss/__init__.py +++ b/src/azul/plugins/repository/dss/__init__.py @@ -140,7 +140,7 @@ def list_bundles(self, def fetch_bundle(self, bundle_fqid: DSSBundleFQID) -> DSSBundle: assert False, 'DSS is EOL' # noinspection PyUnreachableCode - return DSSBundle(fqid=bundle_fqid, manifest=[], metadata={}, links={}) + return DSSBundle(fqid=bundle_fqid, manifest={}, metadata={}, links={}) def dss_subscription_query(self, prefix: str) -> JSON: return { diff --git a/src/azul/plugins/repository/tdr_hca/__init__.py b/src/azul/plugins/repository/tdr_hca/__init__.py index 3ed3139e3..f06b6526f 100644 --- a/src/azul/plugins/repository/tdr_hca/__init__.py +++ b/src/azul/plugins/repository/tdr_hca/__init__.py @@ -192,7 +192,8 @@ def add_entity(self, self.stitched.add(entity.entity_id) if entity.entity_type.endswith('_file'): descriptor = json.loads(row['descriptor']) - self._add_manifest_entry(name=row['file_name'], + self._add_manifest_entry(entity, + name=row['file_name'], uuid=descriptor['file_id'], version=descriptor['file_version'], size=descriptor['size'], @@ -224,6 +225,7 @@ def add_entity(self, _suffix = 'tdr.' def _add_manifest_entry(self, + entity: EntityReference, *, name: str, uuid: str, @@ -233,7 +235,7 @@ def _add_manifest_entry(self, dcp_type: str, checksums: Optional[Checksums] = None, drs_uri: Optional[str] = None) -> None: - self.manifest.append({ + self.manifest[str(entity)] = { 'name': name, 'uuid': uuid, 'version': version, @@ -250,7 +252,7 @@ def _add_manifest_entry(self, **checksums.to_json() } ) - }) + } def _parse_drs_uri(self, file_id: Optional[str], @@ -326,7 +328,7 @@ def _query_unique_sorted(self, def _emulate_bundle(self, bundle_fqid: TDRBundleFQID) -> TDRHCABundle: bundle = TDRHCABundle(fqid=bundle_fqid, - manifest=[], + manifest={}, metadata={}, links={}) entities, root_entities, links_jsons = self._stitch_bundles(bundle) @@ -356,7 +358,6 @@ def _emulate_bundle(self, bundle_fqid: TDRBundleFQID) -> TDRHCABundle: log.error('TDR worker failed to retrieve entities of type %r', entity_type, exc_info=e) raise e - bundle.manifest.sort(key=itemgetter('uuid')) return bundle def _stitch_bundles(self, diff --git a/src/humancellatlas/data/metadata/api.py b/src/humancellatlas/data/metadata/api.py index 5aefe26d4..812b04156 100644 --- a/src/humancellatlas/data/metadata/api.py +++ b/src/humancellatlas/data/metadata/api.py @@ -34,6 +34,7 @@ ) from azul.collections import ( OrderedSet, + adict, dict_merge, ) @@ -43,7 +44,6 @@ from azul.types import ( JSON, MutableJSON, - MutableJSONs, is_optional, ) from humancellatlas.data.metadata.age_range import ( @@ -747,7 +747,7 @@ class File(LinkedEntity): def __init__(self, json: JSON, - manifest: Mapping[str, ManifestEntry]): + manifest_entry: ManifestEntry): super().__init__(json) content = json.get('content', json) # '/' was once forbidden in file paths and was encoded with '!'. Now @@ -756,7 +756,7 @@ def __init__(self, core = content['file_core'] core['file_name'] = core['file_name'].replace('!', '/') self.format = lookup(core, 'format', 'file_format') - self.manifest_entry = manifest[core['file_name']] + self.manifest_entry = manifest_entry self.content_description = {ontology_label(cd) for cd in core.get('content_description', [])} self.file_source = core.get('file_source') self.from_processes = dict() @@ -789,8 +789,8 @@ class SequenceFile(File): def __init__(self, json: JSON, - manifest: Mapping[str, ManifestEntry]): - super().__init__(json, manifest) + manifest_entry: ManifestEntry): + super().__init__(json, manifest_entry) content = json.get('content', json) self.read_index = content['read_index'] self.lane_index = content.get('lane_index') @@ -807,8 +807,8 @@ class AnalysisFile(File): def __init__(self, json: JSON, - manifest: Mapping[str, ManifestEntry]): - super().__init__(json, manifest) + manifest_entry: ManifestEntry): + super().__init__(json, manifest_entry) content = json.get('content', json) self.matrix_cell_count = content.get('matrix_cell_count') @@ -914,29 +914,30 @@ class Bundle: def __init__(self, uuid: str, version: str, - manifest: MutableJSONs, - metadata: Mapping[str, JSON], + manifest: Mapping[str, MutableJSON], + metadata: Mapping[str, MutableJSON], links_json: JSON, stitched_entity_ids: Collection[str] = ()): self.uuid = UUID4(uuid) self.version = version - self.manifest = {m.name: m for m in map(ManifestEntry, manifest)} + self.manifest = {ref: ManifestEntry(e) for ref, e in manifest.items()} self.stitched = frozenset(map(UUID4, stitched_entity_ids)) - json_by_core_cls: MutableMapping[type[E], list[JSON]] = defaultdict(list) + entity_args_by_core_cls: MutableMapping[type[E], list[dict]] = defaultdict(list) for key, json in metadata.items(): schema_name = EntityReference.parse(key).entity_type entity_cls = entity_types[schema_name] core_cls = core_types[entity_cls] - json_by_core_cls[core_cls].append(json) + args = adict(json=json, + manifest_entry=self.manifest.get(key)) + entity_args_by_core_cls[core_cls].append(args) def from_json_vx(core_cls: type[E], - **kwargs ) -> MutableMapping[UUID4, E]: - json_entities = json_by_core_cls[core_cls] + args_list = entity_args_by_core_cls[core_cls] entities = ( - core_cls.from_json(entity, **kwargs) - for entity in json_entities + core_cls.from_json(**args) + for args in args_list ) return {entity.document_id: entity for entity in entities} @@ -944,7 +945,7 @@ def from_json_vx(core_cls: type[E], self.biomaterials = from_json_vx(Biomaterial) self.processes = from_json_vx(Process) self.protocols = from_json_vx(Protocol) - self.files = from_json_vx(File, manifest=self.manifest) + self.files = from_json_vx(File) self.entities = {**self.projects, **self.biomaterials, **self.processes, **self.protocols, **self.files} diff --git a/src/humancellatlas/data/metadata/helpers/staging_area.py b/src/humancellatlas/data/metadata/helpers/staging_area.py index c6a0cd651..7bda07e3e 100644 --- a/src/humancellatlas/data/metadata/helpers/staging_area.py +++ b/src/humancellatlas/data/metadata/helpers/staging_area.py @@ -35,7 +35,6 @@ from azul.types import ( JSON, MutableJSON, - MutableJSONs, ) from humancellatlas.data.metadata.api import ( Bundle, @@ -147,12 +146,14 @@ def get_bundle(self, subgraph_id: str) -> Bundle: version, manifest, metadata, links = self.get_bundle_parts(subgraph_id) return Bundle(subgraph_id, version, manifest, metadata, links) - def get_bundle_parts(self, subgraph_id: str) -> tuple[str, MutableJSONs, MutableJSON, MutableJSON]: + def get_bundle_parts(self, + subgraph_id: str + ) -> tuple[str, MutableJSON, MutableJSON, MutableJSON]: """ Return the components to create a bundle from the staging area """ links_file = self.links[subgraph_id] - manifest = [] + manifest = {} metadata = {} entity_ids_by_type = self._entity_ids_by_type(subgraph_id) for entity_type, entity_ids in entity_ids_by_type.items(): @@ -164,7 +165,7 @@ def get_bundle_parts(self, subgraph_id: str) -> tuple[str, MutableJSONs, Mutable metadata[key] = json_content if entity_type.endswith('_file'): file_manifest = self.descriptors[entity_id].manifest_entry - manifest.append(file_manifest) + manifest[key] = file_manifest else: pass return links_file.version, manifest, metadata, links_file.content diff --git a/test/hca_metadata_api/cans/examples/1M Immune Cells/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json b/test/hca_metadata_api/cans/examples/1M Immune Cells/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json index ed036c617..5c2c197ca 100644 --- a/test/hca_metadata_api/cans/examples/1M Immune Cells/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json +++ b/test/hca_metadata_api/cans/examples/1M Immune Cells/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/36d7f891-8a43-4ae4-8472-a34dcb2be643": { "crc32c": "29B559F9", "sha1": "0587673d7d88efa40a6f4d25d34d2eba14cf8e8b", "sha256": "df8b88b6f32f494a53687f79724a6ebd8bbb9c5c0474b9a857d467a0bdb83c2d", @@ -12,7 +12,7 @@ "uuid": "c8a4ea32-6d66-48f3-b480-9421743b9c0a", "version": "1" } - ], + }, "metadata": { "cell_suspension/7b53bae2-2424-44c0-9d80-ad72e8bca136": { "describedBy": "http://schema.dev.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/hca_metadata_api/cans/examples/CD4+ cytotoxic T lymphocytes/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json b/test/hca_metadata_api/cans/examples/CD4+ cytotoxic T lymphocytes/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json index 4562cd052..64cebd942 100644 --- a/test/hca_metadata_api/cans/examples/CD4+ cytotoxic T lymphocytes/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json +++ b/test/hca_metadata_api/cans/examples/CD4+ cytotoxic T lymphocytes/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/a5806f2e-3f85-486a-9015-e02e5c805285": { "crc32c": "E0404A01", "sha1": "2d85a788acb4a291d5d13fb918dfbb25d4205de9", "sha256": "895c57e9ca2bccbcd306086fd691c55b8e9303a864f1791d9a924b599a3c5313", @@ -12,7 +12,7 @@ "uuid": "6ac13e04-d123-42de-bed9-f874b0d2fed2", "version": "1" } - ], + }, "metadata": { "cell_suspension/cc0d9bf0-6ad5-4489-994b-db26ff761c5a": { "describedBy": "http://schema.dev.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/hca_metadata_api/cans/examples/HPSI_human_cerebral_organoids/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json b/test/hca_metadata_api/cans/examples/HPSI_human_cerebral_organoids/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json index 3c5bdfc06..ce1cfe897 100644 --- a/test/hca_metadata_api/cans/examples/HPSI_human_cerebral_organoids/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json +++ b/test/hca_metadata_api/cans/examples/HPSI_human_cerebral_organoids/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/740b2221-41c6-498d-87de-8b2937a5ebed": { "crc32c": "E9B38AA1", "sha1": "0cec1204162ddfbd3782a1aedce104b373163a9f", "sha256": "3f29407965e542a4787b6ab1f32ea3f4162017dc88e294ab3e48ddfe76d476e7", @@ -12,7 +12,7 @@ "uuid": "b9f26dd4-dddc-426d-97bb-674e8a0a26a2", "version": "1" }, - { + "sequence_file/a3f614b3-e6cf-4751-a15d-ff623efea62a": { "crc32c": "59378C79", "sha1": "d982fed4c2cfd402a145637f1bc1d6364745a506", "sha256": "ff3118605c52fd9cb96cb17b96ecc8ec74b72cb75558305e8630568478c03547", @@ -24,7 +24,7 @@ "uuid": "1af1df49-a772-4645-bc0e-e8a599ab7121", "version": "1" }, - { + "sequence_file/56c2a158-e389-40a3-97a7-0f2966a393b8": { "crc32c": "8F96945F", "sha1": "9cc9baf78624edf0e2c39e48ab7f559f32cfd7ca", "sha256": "5a4bc638c31346d1fc4cde4cc8bfaf2341e486ba377edbeafb42a12d49ab6ddc", @@ -36,7 +36,7 @@ "uuid": "53c4d13c-d3d3-4294-affe-fd1fecf9d1ef", "version": "1" }, - { + "supplementary_file/a0eb3208-97e4-498c-993b-20757231b233": { "crc32c": "62D4DB03", "sha1": "32df780ee719286fccafae4d715607d4f05f3c40", "sha256": "6daea9af107bd45e2666ca2ccd1a2a3d98c42b892a7a783093b638508eccb158", @@ -48,7 +48,7 @@ "uuid": "c7555cbd-d66c-4f9a-b3f4-23e013da6910", "version": "1" }, - { + "supplementary_file/e01ee650-58b3-4f3c-8da8-4483700a1eae": { "crc32c": "B9D38666", "sha1": "095ce1889337b2d8dd5ba3ce21ad85903ebda004", "sha256": "a8b3535da8ba62f83c31b238c86a6f4b9848f913c6d35824cef5f955748f1ab9", @@ -60,7 +60,7 @@ "uuid": "b5bc3187-6553-4410-b589-ac0f3bb6858f", "version": "1" }, - { + "supplementary_file/5ab06a61-c66b-4d3d-9889-ab47371a65b0": { "crc32c": "47985515", "sha1": "b12c361c6d4ebb7c255ddb3e67e3babbd1fe0e25", "sha256": "492641dd1bc0004c879d9fe8599e03a455612892df4802f5a1e9c860216777f6", @@ -72,7 +72,7 @@ "uuid": "28aa156f-3eee-481b-8849-ab68ddf4b67d", "version": "1" } - ], + }, "metadata": { "cell_line/304fadde-e22a-4ff9-9544-f8ec097b6135": { "describedBy": "http://schema.dev.data.humancellatlas.org/type/biomaterial/8.6.2/cell_line", diff --git a/test/hca_metadata_api/cans/examples/Healthy and type 2 diabetes pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json b/test/hca_metadata_api/cans/examples/Healthy and type 2 diabetes pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json index 59154afab..e38da43d8 100644 --- a/test/hca_metadata_api/cans/examples/Healthy and type 2 diabetes pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json +++ b/test/hca_metadata_api/cans/examples/Healthy and type 2 diabetes pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/60471337-a47b-4b9c-95e7-4a19349a5e05": { "crc32c": "3D02CDD9", "sha1": "b2dad8a028624c456ba43f1f97ac20bba430af74", "sha256": "730386f5383a1c82f114ba6cc9ff381f2c47872d6edc4f1342b0b9df9a282795", @@ -12,7 +12,7 @@ "uuid": "32d60a94-9f0f-44e3-83c6-eb2d1c1177bd", "version": "1" } - ], + }, "metadata": { "cell_suspension/1200f5bf-7d45-4f26-865e-b560797f1808": { "describedBy": "http://schema.dev.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/hca_metadata_api/cans/examples/Mouse Melanoma/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json b/test/hca_metadata_api/cans/examples/Mouse Melanoma/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json index 1a9caa012..96617dcbf 100644 --- a/test/hca_metadata_api/cans/examples/Mouse Melanoma/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json +++ b/test/hca_metadata_api/cans/examples/Mouse Melanoma/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/b93897c4-0681-407a-bc0c-fb791b919fa4": { "crc32c": "4AEB011B", "sha1": "7d5358d6a69ffc7e92ae1bae5e4ae6b9467bc8c5", "sha256": "d184ee1517a86acdf92d35e911db3effef0630ab40ef062b094d456d4e6084e1", @@ -12,7 +12,7 @@ "uuid": "b2b4819a-e22d-4ed4-a5c8-c04a1dec79eb", "version": "1" } - ], + }, "metadata": { "cell_suspension/1446ca36-ba75-45ea-b6ab-a80641a88812": { "describedBy": "http://schema.dev.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/hca_metadata_api/cans/examples/Single cell transcriptome analysis of human pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json b/test/hca_metadata_api/cans/examples/Single cell transcriptome analysis of human pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json index c5887a11d..1d47965c9 100644 --- a/test/hca_metadata_api/cans/examples/Single cell transcriptome analysis of human pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json +++ b/test/hca_metadata_api/cans/examples/Single cell transcriptome analysis of human pancreas/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/baf745cd-9052-4a6c-8c1a-919390062c09": { "crc32c": "30F94925", "sha1": "472dd1bf4a1e942cbfc6ad79687e2a2ca8f72c74", "sha256": "b474913c2db1d26a3d8ab9f37c59ac7e1768b2c628b4e250d0dae0c942adc677", @@ -12,7 +12,7 @@ "uuid": "a4f16d4f-cdd7-46f4-8ead-42155d059f23", "version": "1" }, - { + "sequence_file/0494ee09-b1e2-437a-986f-06d5df4a6858": { "crc32c": "3727801A", "sha1": "98b1bcf334aae2a06b973565497b16b092b5fc7e", "sha256": "a58cc9dff7f585b8ddc40c56c60219b9c61f76fe210e357d2761ca6cea0693f9", @@ -24,7 +24,7 @@ "uuid": "26f05d68-8700-40a4-8c5f-173cad377f22", "version": "1" } - ], + }, "metadata": { "cell_suspension/c61125ab-d5e0-4d93-b0a7-2deac1729f65": { "describedBy": "http://schema.dev.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/hca_metadata_api/cans/examples/Tissue stability/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json b/test/hca_metadata_api/cans/examples/Tissue stability/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json index 39103a9a5..4bb974624 100644 --- a/test/hca_metadata_api/cans/examples/Tissue stability/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json +++ b/test/hca_metadata_api/cans/examples/Tissue stability/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-08-03T082009.272868Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/4d3839bf-e39f-4136-92a4-6f7009e88567": { "crc32c": "5E314552", "sha1": "0caf6b4d52c6095fe9b78eae9f12f4b2e7bdee3b", "sha256": "e7f7e93c198d758a084d0ef4065b0314ba7365a72eeccc77f3b6368e4b951308", @@ -12,7 +12,7 @@ "uuid": "72b3bd3f-1874-4636-bffe-0ab382cf6d72", "version": "1" }, - { + "supplementary_file/c3ce4634-ba98-45a7-a546-a2e3f4873d4c": { "crc32c": "5BA5B282", "sha1": "6c65e7c34a953a96a9991e302a367999f0612fab", "sha256": "fced35e7be4a017707f154e25a16f4b8f5287f636909d7d4c1ef4802cc090c78", @@ -24,7 +24,7 @@ "uuid": "e0e51494-0793-4145-b10e-32d0c48f7905", "version": "1" }, - { + "supplementary_file/f973157b-0dfa-48aa-b790-faef283a513d": { "crc32c": "CAD4F2CE", "sha1": "595994145200f0ad7917bb019f86164e6bcc58e8", "sha256": "a01dcb62b1948ea2b998b2e763a9aa5d888072c0e71c6c324c9aa1c2b9ed13d4", @@ -36,7 +36,7 @@ "uuid": "81f61d0b-514d-47c5-814d-e238996ecab2", "version": "1" }, - { + "supplementary_file/339458c4-c7ab-4ee1-9071-999af6d16d47": { "crc32c": "92435DE6", "sha1": "e6928d497f33a976aa49ee799358f3b2f048196b", "sha256": "4b05be3a55ad520d3d3afd0b0e1c9f82b5ed7e0b1feb9b57c0283b7e430f0f38", @@ -48,7 +48,7 @@ "uuid": "0b251162-aeb6-418b-b313-49602512745e", "version": "1" }, - { + "supplementary_file/903bc97d-addf-45fa-ae35-cf7e31d0c20b": { "crc32c": "03D66B96", "sha1": "225ec6c9f8675206e628611b2bf2dbb4a24b5765", "sha256": "be3904db8cdb8deba1619eed9ec227071d842c874c61676eaa9a6bf8afd73156", @@ -60,7 +60,7 @@ "uuid": "7b8da1fb-e6c2-4fc1-b370-11fa9698939f", "version": "1" }, - { + "supplementary_file/e9000e63-4ead-468d-826a-9bea0a1c68ab": { "crc32c": "455326F9", "sha1": "f1cc033ec095cf812f0d2ad0689d277b271523e5", "sha256": "023f39b768280f66d91cf9cc7771d14c1a0f893ecd96d4727ec6206d99041922", @@ -72,7 +72,7 @@ "uuid": "a0e29103-23b1-4570-a335-29ab7e4de062", "version": "1" }, - { + "supplementary_file/529fd903-f4b9-44a9-b32f-047d359ad541": { "crc32c": "76070BE8", "sha1": "8c6fd1a6af8c050415b42795e40975ce0e685d1b", "sha256": "ade3a42aa52b0159f8cafdf112119632ec06fc9eefe3a8846e7431e02b1dca87", @@ -84,7 +84,7 @@ "uuid": "06403366-b0af-455b-b5e7-ec7cfbacb791", "version": "1" }, - { + "supplementary_file/9904d58a-4a23-4099-b885-3bdefac39b20": { "crc32c": "FCA6B2B2", "sha1": "05e3276d65e86b46b080243380ca92954fa8e46d", "sha256": "32f7948b17e53588ba1c7ebe2c0ea11560eeb232b1d626e3d24a82d46a035140", @@ -96,7 +96,7 @@ "uuid": "aa155ec7-5ef5-4a22-9907-23019097fba0", "version": "1" }, - { + "supplementary_file/f863f044-f904-4bf2-8535-fa45f123f237": { "crc32c": "A5FA937C", "sha1": "8b8325fffab6dff50944126ad95ff44776128440", "sha256": "ab30dc7402b9d849adf90f1433b952f005a56a6989c6a0306901d7dbeac203d8", @@ -108,7 +108,7 @@ "uuid": "769901d5-ef88-4c45-b83c-5bf9a97d59d2", "version": "1" } - ], + }, "metadata": { "cell_suspension/932dae75-ba79-42a6-915a-c6a67b39835c": { "describedBy": "http://schema.dev.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/hca_metadata_api/cans/prod/6b498499-c5b4-452f-9ff9-2318dbb86000.2019-01-03T163633.780215Z.json b/test/hca_metadata_api/cans/prod/6b498499-c5b4-452f-9ff9-2318dbb86000.2019-01-03T163633.780215Z.json index 6b6f241fe..1904c588e 100644 --- a/test/hca_metadata_api/cans/prod/6b498499-c5b4-452f-9ff9-2318dbb86000.2019-01-03T163633.780215Z.json +++ b/test/hca_metadata_api/cans/prod/6b498499-c5b4-452f-9ff9-2318dbb86000.2019-01-03T163633.780215Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/9c49bbf2-cf62-4f94-9b9d-a3da42e2d52a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "dec968a1", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "44b4cb90-1ae1-48a8-aaf9-2a0b8023f3d1", "version": "2019-01-03T163557.783237Z" }, - { + "sequence_file/ac93d656-4aa5-4f6c-b273-dc1d8be1934c": { "content-type": "application/gzip; dcp-type=data", "crc32c": "d5532b5f", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "9df72772-4e7f-443d-ba15-4c1000f60003", "version": "2019-01-03T163558.131144Z" }, - { + "sequence_file/5989ca50-45b5-4834-bfde-d290a8dfa97e": { "content-type": "application/gzip; dcp-type=data", "crc32c": "802b0183", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "4de318e4-8292-4b51-8f06-25bf2f6697bf", "version": "2019-01-03T163558.311125Z" }, - { + "supplementary_file/434fa581-90e3-43cc-8ff5-2596e6e8d366": { "content-type": "application/pdf; dcp-type=data", "crc32c": "1e67ff31", "indexed": false, @@ -48,7 +48,7 @@ "uuid": "83361a8e-5029-45fd-9705-68e5a9bb4074", "version": "2019-01-03T163558.501100Z" }, - { + "supplementary_file/f126dd41-0041-46b7-8c63-7da264be6b81": { "content-type": "application/pdf; dcp-type=data", "crc32c": "201fded1", "indexed": false, @@ -60,7 +60,7 @@ "uuid": "f633ef07-9c42-4771-9057-16f4adfb2350", "version": "2019-01-03T163558.748211Z" }, - { + "supplementary_file/f48ebd9a-f3ac-4e02-b698-7146cd396946": { "content-type": "application/pdf; dcp-type=data", "crc32c": "47441108", "indexed": false, @@ -72,7 +72,7 @@ "uuid": "d2eedcf0-e06b-4975-99f8-f3c810ca1e39", "version": "2019-01-03T163559.110502Z" } - ], + }, "metadata": { "cell_suspension/c2396f83-22e4-4a2d-8cce-a30feb533603": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/8.6.2/cell_suspension", diff --git a/test/hca_metadata_api/cans/prod/86e7b58e-b9f0-4020-8b34-c61d6da02d44.2019-09-20T103932.395795Z.json b/test/hca_metadata_api/cans/prod/86e7b58e-b9f0-4020-8b34-c61d6da02d44.2019-09-20T103932.395795Z.json index 590e31ac2..3b91c0675 100644 --- a/test/hca_metadata_api/cans/prod/86e7b58e-b9f0-4020-8b34-c61d6da02d44.2019-09-20T103932.395795Z.json +++ b/test/hca_metadata_api/cans/prod/86e7b58e-b9f0-4020-8b34-c61d6da02d44.2019-09-20T103932.395795Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/12484c33-24ec-4293-8f96-4cb1a43a6479": { "content-type": "application/gzip; dcp-type=data", "crc32c": "759039c3", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "ea5eea99-d788-4762-8de5-32602316da79", "version": "2019-09-20T104007.794231Z" }, - { + "sequence_file/f85b458b-b189-4ee7-939a-c905b70ae431": { "content-type": "application/gzip; dcp-type=data", "crc32c": "9069c15e", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "351cae9c-9695-4797-b455-526dd29117bb", "version": "2019-09-20T104008.028755Z" }, - { + "sequence_file/18feeb7d-66ca-4ea4-a019-a10e5b762465": { "content-type": "application/gzip; dcp-type=data", "crc32c": "80b75620", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "b64d8e12-028a-46fd-a778-5a5a8e971289", "version": "2019-09-20T104008.305993Z" }, - { + "supplementary_file/2e64e936-85ec-49a0-8365-578b5621bcb1": { "content-type": "application/pdf; dcp-type=data", "crc32c": "82c6888c", "indexed": false, @@ -48,7 +48,7 @@ "uuid": "8e71749b-d445-409a-bc53-ba359438df69", "version": "2019-09-20T104008.555357Z" }, - { + "supplementary_file/720e6453-71ff-4742-ba6a-e5a3a5d3cee0": { "content-type": "application/pdf; dcp-type=data", "crc32c": "18cb622e", "indexed": false, @@ -60,7 +60,7 @@ "uuid": "dfa8a3b3-192c-4867-8c52-f956a6ebab06", "version": "2019-09-20T104008.746891Z" }, - { + "supplementary_file/09917cf3-76de-4b85-8944-03664cd0d954": { "content-type": "application/pdf; dcp-type=data", "crc32c": "ced2f561", "indexed": false, @@ -72,7 +72,7 @@ "uuid": "deb6c7db-8ed1-4c87-ab39-44c3499e8499", "version": "2019-09-20T104008.919497Z" }, - { + "supplementary_file/8fb964a1-fd66-43b6-9d13-57db6bd185f2": { "content-type": "application/pdf; dcp-type=data", "crc32c": "5ef01a45", "indexed": false, @@ -84,7 +84,7 @@ "uuid": "58b2c404-62c7-46cc-912f-99a5731cd8e5", "version": "2019-09-20T104009.214107Z" } - ], + }, "metadata": { "cell_suspension/eb27c398-f017-4ef1-acc8-3f51af87fe17": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.3.0/cell_suspension", diff --git a/test/hca_metadata_api/cans/prod/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-03-29T142048.835519Z.json b/test/hca_metadata_api/cans/prod/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-03-29T142048.835519Z.json index 7d7ed0794..29664b620 100644 --- a/test/hca_metadata_api/cans/prod/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-03-29T142048.835519Z.json +++ b/test/hca_metadata_api/cans/prod/b2216048-7eaa-45f4-8077-5a3fb4204953.2018-03-29T142048.835519Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/d2f32681-9c1a-4dfd-b506-c24327afb8d1": { "content-type": "application/gzip; dcp-type=data", "crc32c": "f93b9d00", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "d2f32681-9c1a-4dfd-b506-c24327afb8d1", "version": "2018-03-29T142044.370144Z" }, - { + "sequence_file/aa662c76-d220-49f4-8316-f4af5820d60b": { "content-type": "application/gzip; dcp-type=data", "crc32c": "1b953a24", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "aa662c76-d220-49f4-8316-f4af5820d60b", "version": "2018-03-29T142045.025802Z" } - ], + }, "metadata": { "project/93f6a42f-1790-4af4-b5d1-8c436cb6feae": { "content": { diff --git a/test/hca_metadata_api/cans/prod/cc0b5aa4-9f66-48d2-aa4f-ed019d1c9439.2019-05-15T222432.561000Z.json b/test/hca_metadata_api/cans/prod/cc0b5aa4-9f66-48d2-aa4f-ed019d1c9439.2019-05-15T222432.561000Z.json index f7ed54de1..bb95ea3ca 100644 --- a/test/hca_metadata_api/cans/prod/cc0b5aa4-9f66-48d2-aa4f-ed019d1c9439.2019-05-15T222432.561000Z.json +++ b/test/hca_metadata_api/cans/prod/cc0b5aa4-9f66-48d2-aa4f-ed019d1c9439.2019-05-15T222432.561000Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/61fd5348-92c5-446b-a57a-746330cebf76": { "content-type": "application/gzip; dcp-type=data", "crc32c": "86192092", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "e4d9ebe5-2e62-47cf-bc35-1fb8ef7c1ef7", "version": "2019-05-16T015324.490566Z" }, - { + "supplementary_file/e738a267-87fc-4070-abc7-b3be6442c6d0": { "content-type": "application/pdf; dcp-type=data", "crc32c": "847325b6", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "6578c322-7060-4c82-8469-9e54100e6b44", "version": "2019-05-16T015325.007527Z" }, - { + "supplementary_file/01a1d04b-05d0-4904-b627-68b0dc02bc17": { "content-type": "application/pdf; dcp-type=data", "crc32c": "b9364bfa", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "cd8e02d1-d0f9-4094-9a31-329931df60dc", "version": "2019-05-16T015325.251968Z" } - ], + }, "metadata": { "cell_suspension/01ba6be9-ed4b-4c6b-ae05-2e06aadc2019": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.1.0/cell_suspension", diff --git a/test/hca_metadata_api/cans/prod/ffee3a9b-14de-4dda-980f-c08092b2dabe.2019-04-17T175706.867000Z.json b/test/hca_metadata_api/cans/prod/ffee3a9b-14de-4dda-980f-c08092b2dabe.2019-04-17T175706.867000Z.json index 27c2bd7f1..1fbfd0b77 100644 --- a/test/hca_metadata_api/cans/prod/ffee3a9b-14de-4dda-980f-c08092b2dabe.2019-04-17T175706.867000Z.json +++ b/test/hca_metadata_api/cans/prod/ffee3a9b-14de-4dda-980f-c08092b2dabe.2019-04-17T175706.867000Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/a31d51c9-7354-4c8c-91e6-a9d2a2e10616": { "content-type": "application/gzip; dcp-type=data", "crc32c": "9e612174", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "a8cd43ba-07c4-41d4-864c-51bdd8414e2a", "version": "2019-04-17T185612.704173Z" }, - { + "sequence_file/a2db643f-decd-426d-94db-13c3279ea80a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "8178debb", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "13f3e771-f16b-4589-b317-ed88c817bb59", "version": "2019-04-17T185613.009698Z" } - ], + }, "metadata": { "cell_suspension/e4c205cd-746f-4665-8c29-149c6e109e9d": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/11.0.0/cell_suspension", diff --git a/test/hca_metadata_api/cans/prod/ffee7f29-5c38-461a-8771-a68e20ec4a2e.2019-02-02T065454.662896Z.json b/test/hca_metadata_api/cans/prod/ffee7f29-5c38-461a-8771-a68e20ec4a2e.2019-02-02T065454.662896Z.json index 843085449..8b3aa37ba 100644 --- a/test/hca_metadata_api/cans/prod/ffee7f29-5c38-461a-8771-a68e20ec4a2e.2019-02-02T065454.662896Z.json +++ b/test/hca_metadata_api/cans/prod/ffee7f29-5c38-461a-8771-a68e20ec4a2e.2019-02-02T065454.662896Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/b91aca7b-e71b-4014-ab09-5d87e52bc305": { "content-type": "text/plain; dcp-type=data", "crc32c": "82ad16f4", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "17da1d2f-8da0-4b77-ae99-257399a88f75", "version": "2019-02-02T065434.636713Z" }, - { + "analysis_file/34e92010-0e2d-49af-b4b7-bed7a2c9e490": { "content-type": "text/plain; dcp-type=data", "crc32c": "cc0c1472", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "435d0d63-4d37-47b6-85f4-09d66d5ac287", "version": "2019-02-02T065434.962270Z" }, - { + "analysis_file/3db4d80f-cbd5-45da-9048-6fe8e2e4d0d2": { "content-type": "text/plain; dcp-type=data", "crc32c": "d7ba769f", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "c113f2cd-2f99-4db0-bdeb-f9d91ffb0bc6", "version": "2019-02-02T065435.361197Z" }, - { + "analysis_file/ed37a61e-4449-4bce-a774-7cbd732781c8": { "content-type": "text/plain; dcp-type=data", "crc32c": "d5ece005", "indexed": false, @@ -48,7 +48,7 @@ "uuid": "4a020965-bc91-4c57-b277-86a161712dab", "version": "2019-02-02T065435.661240Z" }, - { + "analysis_file/b70e4907-383c-4466-a244-3e7ce9890dae": { "content-type": "text/plain; dcp-type=data", "crc32c": "3abf5428", "indexed": false, @@ -60,7 +60,7 @@ "uuid": "614368df-6a91-41cd-9301-db259e303e38", "version": "2019-02-02T065435.993593Z" }, - { + "analysis_file/7ee496ab-286c-4962-919a-70244090e315": { "content-type": "text/csv; dcp-type=data", "crc32c": "7dc7d4d1", "indexed": false, @@ -72,7 +72,7 @@ "uuid": "78e49bf5-c92b-4663-bc12-6e838ad63040", "version": "2019-02-02T065436.433736Z" }, - { + "analysis_file/c15427d1-e5b7-4bee-91fe-d98b04dc6a01": { "content-type": "text/csv; dcp-type=data", "crc32c": "65ded069", "indexed": false, @@ -84,7 +84,7 @@ "uuid": "7a08e477-1b95-4667-a443-4257ff879e3a", "version": "2019-02-02T065436.875303Z" }, - { + "analysis_file/b11e96c4-2472-4317-b45b-5bc1c9b55704": { "content-type": "text/csv; dcp-type=data", "crc32c": "202ef83a", "indexed": false, @@ -96,7 +96,7 @@ "uuid": "b263ebdf-6585-473a-a3eb-a19588b43e35", "version": "2019-02-02T065437.247604Z" }, - { + "analysis_file/828d7e40-4f6b-42e1-8cd2-6ddccb5b0e6c": { "content-type": "text/csv; dcp-type=data", "crc32c": "0e0c45c6", "indexed": false, @@ -108,7 +108,7 @@ "uuid": "8fdc9b77-6b95-4149-91b6-1ed529eb75af", "version": "2019-02-02T065437.646451Z" }, - { + "analysis_file/6804b943-fda7-4e8f-bfba-23e368843e63": { "content-type": "text/csv; dcp-type=data", "crc32c": "cd082d61", "indexed": false, @@ -120,7 +120,7 @@ "uuid": "a08fbac2-47d0-426d-9b62-94f60792c554", "version": "2019-02-02T065438.217456Z" }, - { + "analysis_file/aeb5aebe-9e45-4c9d-931a-883f8fa71225": { "content-type": "text/csv; dcp-type=data", "crc32c": "4bb6bdc9", "indexed": false, @@ -132,7 +132,7 @@ "uuid": "e274aff4-2348-4d25-a69f-aa5e30f50529", "version": "2019-02-02T065438.572940Z" }, - { + "analysis_file/7c5a87c1-e3b6-42aa-8d68-0f534ded7d2d": { "content-type": "text/csv; dcp-type=data", "crc32c": "99822758", "indexed": false, @@ -144,7 +144,7 @@ "uuid": "b426e03c-0f98-4b9e-838b-b6fe67e35a0a", "version": "2019-02-02T065439.061311Z" }, - { + "analysis_file/87bd704c-3d36-4620-bdf2-5ad28c5a3d56": { "content-type": "application/gzip; dcp-type=data", "crc32c": "d9e787ec", "indexed": false, @@ -156,7 +156,7 @@ "uuid": "f467b2b5-d0d5-4c2c-a253-1f9f64629e3b", "version": "2019-02-02T065439.579077Z" }, - { + "analysis_file/0aa4b2f3-b969-40d7-97f9-f33af0088915": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "01716cae", "indexed": false, @@ -168,7 +168,7 @@ "uuid": "70d8b64f-a333-4ac3-8b63-17ba0fb8ef64", "version": "2019-02-02T065440.809043Z" }, - { + "analysis_file/697a869d-079b-48d4-9a7d-c04cf05dd0a9": { "content-type": "application/gzip; dcp-type=data", "crc32c": "c2d024b3", "indexed": false, @@ -180,7 +180,7 @@ "uuid": "28d29046-bdb9-4b70-bb18-f4e8e577e26c", "version": "2019-02-02T065441.191549Z" }, - { + "analysis_file/6d928f58-2e83-46a0-84a2-d08744a42abd": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "0d996a3f", "indexed": false, @@ -192,7 +192,7 @@ "uuid": "4bf077f4-ca44-48db-a1ec-fe8ee8a78ba6", "version": "2019-02-02T065442.065089Z" }, - { + "analysis_file/cc958050-fd69-4919-8529-6f91552ce0ea": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "c9e4f397", "indexed": false, @@ -204,7 +204,7 @@ "uuid": "ee682f7d-5153-4383-8820-7c382fea111a", "version": "2019-02-02T065442.936752Z" }, - { + "analysis_file/0a5730dc-eeeb-4f25-bcc7-24cb7d15ac01": { "content-type": "application/json; dcp-type=data", "crc32c": "f8813cc8", "indexed": false, @@ -216,7 +216,7 @@ "uuid": "1ac59e2e-ac4c-4bc0-a88a-fcfa8ff9e554", "version": "2019-02-02T065443.721413Z" }, - { + "analysis_file/42fffad8-d47d-4da5-8318-45b0f5577c08": { "content-type": "application/json; dcp-type=data", "crc32c": "444a7707", "indexed": false, @@ -228,7 +228,7 @@ "uuid": "c736ed67-6c4e-4a9c-a4e0-42e1bb8e0fa7", "version": "2019-02-02T065444.065526Z" }, - { + "analysis_file/2842a995-c205-4d80-959f-fcb9ff8719ee": { "content-type": "application/json; dcp-type=data", "crc32c": "f35d7e55", "indexed": false, @@ -240,7 +240,7 @@ "uuid": "f1db2924-0210-4e97-9a24-302c61ad237f", "version": "2019-02-02T065444.301965Z" }, - { + "analysis_file/90d148ed-a6eb-44c3-a398-df29459943ff": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "067c801b", "indexed": false, @@ -252,7 +252,7 @@ "uuid": "271f3b5a-549a-41dc-be0f-31b024f8be2b", "version": "2019-02-02T065444.467750Z" }, - { + "analysis_file/269a143b-a2c2-40cd-9394-41a13321581d": { "content-type": "application/json; dcp-type=data", "crc32c": "88068bce", "indexed": false, @@ -264,7 +264,7 @@ "uuid": "25122289-69e6-49ec-b2f7-34f8f0197fe1", "version": "2019-02-02T065444.766955Z" }, - { + "analysis_file/1dda8255-de1c-4bfa-aa79-dbc501d3a112": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "5825e083", "indexed": false, @@ -276,7 +276,7 @@ "uuid": "45cc3e84-7d4f-4fdc-b3f1-4fe5f3913c81", "version": "2019-02-02T065444.968166Z" }, - { + "analysis_file/d76f404c-d294-49f2-bfd5-d475e08fa783": { "content-type": "application/json; dcp-type=data", "crc32c": "38a3821e", "indexed": false, @@ -288,7 +288,7 @@ "uuid": "d8146b44-678e-4954-8a88-c796b21ff424", "version": "2019-02-02T065445.333721Z" }, - { + "analysis_file/3f672b26-ea2f-4e94-ba77-f463c3cb7c38": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "afce17ed", "indexed": false, @@ -300,7 +300,7 @@ "uuid": "f4bb3e61-373c-4266-a55b-3c212a75d660", "version": "2019-02-02T065445.564680Z" }, - { + "analysis_file/4bc5b41c-9fea-4baa-9bf9-75fa4f4a9818": { "content-type": "application/json; dcp-type=data", "crc32c": "c6565f75", "indexed": false, @@ -312,7 +312,7 @@ "uuid": "9f9fd74e-59e3-4f7b-be1a-13ab4fef6bfd", "version": "2019-02-02T065445.798613Z" }, - { + "analysis_file/3e44e8f9-e76d-4158-a7af-eeb9602cf8cc": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "c0b4fc1c", "indexed": false, @@ -324,7 +324,7 @@ "uuid": "69635c16-9520-440e-a38e-3f618b1697d8", "version": "2019-02-02T065446.025189Z" }, - { + "analysis_file/3fe1e9e8-1b0f-4683-a402-ae970b33f144": { "content-type": "application/json; dcp-type=data", "crc32c": "80af448b", "indexed": false, @@ -336,7 +336,7 @@ "uuid": "e0130298-cda9-412e-9c80-aad41273e0aa", "version": "2019-02-02T065446.267656Z" }, - { + "analysis_file/e53c14f5-1a4f-44d6-9773-53faac32233b": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "f282f971", "indexed": false, @@ -348,7 +348,7 @@ "uuid": "1b685fee-669b-4f9d-b2d5-2f193e24fb29", "version": "2019-02-02T065446.482201Z" }, - { + "analysis_file/7a26e63d-fcf2-419a-a945-bca9e539480f": { "content-type": "application/json; dcp-type=data", "crc32c": "b89e6723", "indexed": false, @@ -360,7 +360,7 @@ "uuid": "247a7408-946c-4d2e-bbda-e79f27541347", "version": "2019-02-02T065446.804119Z" }, - { + "analysis_file/644b261b-450e-453c-bb5e-0498a1cf5804": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "38f2e38c", "indexed": false, @@ -372,7 +372,7 @@ "uuid": "133e7526-bc1e-4731-b304-942b2302b260", "version": "2019-02-02T065447.022845Z" }, - { + "analysis_file/b367129a-e83f-4a2b-9278-b5f7930ad457": { "content-type": "application/json; dcp-type=data", "crc32c": "88035931", "indexed": false, @@ -384,7 +384,7 @@ "uuid": "30d5a0b7-f83c-4834-a708-bfa5f33a1e79", "version": "2019-02-02T065447.365605Z" }, - { + "analysis_file/6d4785d0-bd42-4f98-8f7a-ab9ca8fcab39": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "d3733841", "indexed": false, @@ -396,7 +396,7 @@ "uuid": "e0c065fb-3297-44e8-ab6b-cb6aa461bedc", "version": "2019-02-02T065447.635894Z" }, - { + "sequence_file/c15ee840-4702-45f7-bb19-693de19a742a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "4df5f693", "indexed": false, @@ -408,7 +408,7 @@ "uuid": "e3a876c0-814d-48d0-ab33-5de0ca400125", "version": "2019-02-01T115352.287395Z" }, - { + "sequence_file/5f5d9c84-3565-4398-886c-2e50ad4c3964": { "content-type": "application/gzip; dcp-type=data", "crc32c": "aa8d705d", "indexed": false, @@ -420,7 +420,7 @@ "uuid": "54d7fff5-6a9e-44c9-b515-ea28a9b1940f", "version": "2019-02-01T115352.858162Z" } - ], + }, "metadata": { "cell_suspension/9ea49dd1-7511-48f8-be12-237e3d0690c0": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/8.6.6/cell_suspension", diff --git a/test/hca_metadata_api/cans/staging/68bdc676-c442-4581-923e-319c1c2d9018.2018-10-07T130111.835234Z.json b/test/hca_metadata_api/cans/staging/68bdc676-c442-4581-923e-319c1c2d9018.2018-10-07T130111.835234Z.json index 206faab34..10a4f1ed3 100644 --- a/test/hca_metadata_api/cans/staging/68bdc676-c442-4581-923e-319c1c2d9018.2018-10-07T130111.835234Z.json +++ b/test/hca_metadata_api/cans/staging/68bdc676-c442-4581-923e-319c1c2d9018.2018-10-07T130111.835234Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/f3d5c7cb-7ab4-4903-8e0e-dc942121fe27": { "content-type": "application/gzip; dcp-type=data", "crc32c": "a3f89844", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "9dee7111-d743-43a1-b768-118614bf7987", "version": "2018-10-07T130110.968810Z" } - ], + }, "metadata": { "cell_suspension/ef97eef1-a436-4462-a152-1a2b86ee8831": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/hca_metadata_api/cans/staging/70184761-70fc-4b80-8c48-f406a478d5ab.2018-09-05T182535.846470Z.json b/test/hca_metadata_api/cans/staging/70184761-70fc-4b80-8c48-f406a478d5ab.2018-09-05T182535.846470Z.json index 8b230fe64..38fcbca31 100644 --- a/test/hca_metadata_api/cans/staging/70184761-70fc-4b80-8c48-f406a478d5ab.2018-09-05T182535.846470Z.json +++ b/test/hca_metadata_api/cans/staging/70184761-70fc-4b80-8c48-f406a478d5ab.2018-09-05T182535.846470Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/20474552-c0a3-471e-8fa0-d3c5aa05c017": { "content-type": "application/gzip; dcp-type=data", "crc32c": "4ef74578", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "2580e8f2-f2f8-4292-b14d-c9ae8bd25a4e", "version": "2018-09-05T182535.418417Z" }, - { + "sequence_file/177a9d2c-99d4-4fb6-aab7-5869923e9d6a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "69987b3e", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "a53ef014-85f1-4ea8-b24a-454328724e77", "version": "2018-09-05T182535.627826Z" } - ], + }, "metadata": { "cell_suspension/a31a0e93-5be4-44b8-b152-9e25b066e1e5": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.4.0/cell_suspension", diff --git a/test/hca_metadata_api/cans/staging/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.2019-04-03T103426.471000Z.json b/test/hca_metadata_api/cans/staging/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.2019-04-03T103426.471000Z.json index c50b514f7..c861381dc 100644 --- a/test/hca_metadata_api/cans/staging/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.2019-04-03T103426.471000Z.json +++ b/test/hca_metadata_api/cans/staging/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.2019-04-03T103426.471000Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "image_file/6baa3aff-b2a5-4e49-82f7-25c108a6107a": { "content-type": "application/json; dcp-type=data", "crc32c": "d1fbf93a", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "34d230e7-dd9f-4a47-8d5b-23043fe43bc0", "version": "2019-04-03T105535.336469Z" }, - { + "image_file/06dcfc33-21da-485f-8e50-49d294713a9e": { "content-type": "application/json; dcp-type=data", "crc32c": "88def662", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "3db743f3-8235-4553-9a70-37dee987dd64", "version": "2019-04-03T105535.723353Z" }, - { + "image_file/404dd50b-4bc9-4c82-8c18-f53c68eed2fc": { "content-type": "image/tiff; dcp-type=data", "crc32c": "ad2281ce", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "13ce8b32-13df-411e-8874-810de85a6d51", "version": "2019-04-03T105536.220197Z" }, - { + "image_file/5ceb5dc3-9194-494a-b1df-42bb75ab1a04": { "content-type": "image/tiff; dcp-type=data", "crc32c": "d8b5d806", "indexed": false, @@ -48,7 +48,7 @@ "uuid": "1eb42fec-c278-43a5-b3a3-b68d998b3a2a", "version": "2019-04-03T105536.479486Z" }, - { + "image_file/76e52f76-ede7-4088-b7f6-d6e5f6152292": { "content-type": "image/tiff; dcp-type=data", "crc32c": "3b0cdc15", "indexed": false, @@ -60,7 +60,7 @@ "uuid": "fe9c7709-3a1c-4548-9578-01e4a63cc9d3", "version": "2019-04-03T105536.745978Z" }, - { + "image_file/2e496fe6-f500-4e27-b7f5-3c87fe43bbe5": { "content-type": "image/tiff; dcp-type=data", "crc32c": "d1935fb2", "indexed": false, @@ -72,7 +72,7 @@ "uuid": "508e6ec1-6693-4ffb-aa0c-53940a9b1a30", "version": "2019-04-03T105537.018211Z" }, - { + "image_file/be66141d-84a3-457d-a8d2-2f0da8c91dff": { "content-type": "image/tiff; dcp-type=data", "crc32c": "817e676f", "indexed": false, @@ -84,7 +84,7 @@ "uuid": "9d66777d-7af9-4cf2-bcd7-6d4b0cba8fab", "version": "2019-04-03T105537.249443Z" }, - { + "image_file/680cf532-ef0c-4155-b44d-a6ec3920743a": { "content-type": "image/tiff; dcp-type=data", "crc32c": "b3be7c25", "indexed": false, @@ -96,7 +96,7 @@ "uuid": "50b7b8e6-16fa-4e0c-999a-42cab234b1db", "version": "2019-04-03T105537.599532Z" }, - { + "image_file/08609f14-cf43-4188-b743-4a0b55b17347": { "content-type": "image/tiff; dcp-type=data", "crc32c": "acf4da3b", "indexed": false, @@ -108,7 +108,7 @@ "uuid": "c4be485e-8f30-454c-a641-7d0ff3cafb4a", "version": "2019-04-03T105537.940591Z" }, - { + "image_file/d10827a1-38f7-457d-9c9f-695f2fc7689c": { "content-type": "image/tiff; dcp-type=data", "crc32c": "527eec28", "indexed": false, @@ -120,7 +120,7 @@ "uuid": "23fad5c1-d704-479d-b8cc-a629fee2b340", "version": "2019-04-03T105538.199379Z" }, - { + "image_file/6f8eb2e5-7a0c-4c98-8da0-276457357071": { "content-type": "image/tiff; dcp-type=data", "crc32c": "60e20c9b", "indexed": false, @@ -132,7 +132,7 @@ "uuid": "4a9702b6-04e4-409b-a241-42540df7a07f", "version": "2019-04-03T105538.500545Z" }, - { + "image_file/ca480df3-71bb-4634-8f71-b6a75aeb9f05": { "content-type": "image/tiff; dcp-type=data", "crc32c": "c031ab08", "indexed": false, @@ -144,7 +144,7 @@ "uuid": "bb22c7d2-a22e-4e97-ab75-5bf44d95aa47", "version": "2019-04-03T105538.750403Z" }, - { + "image_file/03ae5f5e-65ac-4491-b0ce-eefc940e0224": { "content-type": "image/tiff; dcp-type=data", "crc32c": "46b7935c", "indexed": false, @@ -156,7 +156,7 @@ "uuid": "3047eca0-886e-4989-a220-c35ee497ed62", "version": "2019-04-03T105538.997194Z" }, - 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{ + "image_file/6242cdf3-fd6d-4479-a08a-1747818fd978": { "content-type": "image/tiff; dcp-type=data", "crc32c": "01ece1c6", "indexed": false, @@ -2568,7 +2568,7 @@ "uuid": "33b9e890-93dd-46bf-a464-0b293605ca13", "version": "2019-04-03T105642.695635Z" }, - { + "image_file/bc60bbd4-8b09-425c-b507-9da24a84f412": { "content-type": "image/tiff; dcp-type=data", "crc32c": "3a56f81e", "indexed": false, @@ -2580,7 +2580,7 @@ "uuid": "1a57ba61-0aaa-4a98-8714-44ef51295163", "version": "2019-04-03T105642.933998Z" }, - { + "image_file/1f054ccf-f8dd-4127-a6f8-c577d7dd93dc": { "content-type": "image/tiff; dcp-type=data", "crc32c": "4f573958", "indexed": false, @@ -2592,7 +2592,7 @@ "uuid": "e1a484a8-5557-440d-8196-38a39c8acc3e", "version": "2019-04-03T105643.266340Z" }, - { + "image_file/9954cb4b-b0a4-4479-b31d-0bee1e75d9c7": { "content-type": "image/tiff; dcp-type=data", "crc32c": "5fd73b1d", "indexed": false, @@ -2604,7 +2604,7 @@ "uuid": "4a836a20-3f30-4e33-8374-c9837de94790", "version": "2019-04-03T105643.598363Z" }, - { + "image_file/5f67c32c-a154-4620-8603-0b64979b04a4": { "content-type": "image/tiff; dcp-type=data", "crc32c": "2335b62b", "indexed": false, @@ -2616,7 +2616,7 @@ "uuid": "fa8e2052-2f21-420b-84bb-dee4e2ce79ab", "version": "2019-04-03T105643.915023Z" }, - { + "image_file/7d5bffb2-8bf9-4366-a8b2-762ebb4d6c5d": { "content-type": "image/tiff; dcp-type=data", "crc32c": "61289ac4", "indexed": false, @@ -2628,7 +2628,7 @@ "uuid": "c605b91e-3b62-442d-bd3e-2d58a213a4bf", "version": "2019-04-03T105644.156708Z" }, - { + "image_file/dcee6df0-9e87-4935-8873-f8d30d449d76": { "content-type": "image/tiff; dcp-type=data", "crc32c": "081bc6e9", "indexed": false, @@ -2640,7 +2640,7 @@ "uuid": "d6621482-70a1-42ac-895d-8398aa0bb2b7", "version": "2019-04-03T105644.436640Z" }, - { + "image_file/7d6bdde6-523f-46cb-bed5-d6cfa8fea80c": { "content-type": "image/tiff; dcp-type=data", "crc32c": "b65a523e", "indexed": false, @@ -2652,7 +2652,7 @@ "uuid": "1d051231-9ed8-44fd-8086-93da3a04dd0b", "version": "2019-04-03T105644.954210Z" }, - { + "image_file/e6d00b0c-3641-4ec4-a553-8fd742193dba": { "content-type": "image/tiff; dcp-type=data", "crc32c": "6e9add20", "indexed": false, @@ -2664,7 +2664,7 @@ "uuid": "bba231df-4b9b-44fe-a9e9-df314fc8f75d", "version": "2019-04-03T105645.222571Z" }, - { + "image_file/e5034863-0528-4f55-be95-c8501c29f9fe": { "content-type": "image/tiff; dcp-type=data", "crc32c": "bd266ca9", "indexed": false, @@ -2676,7 +2676,7 @@ "uuid": "6c85c7e1-832c-476c-add9-e2cc509f8de0", "version": "2019-04-03T105645.515825Z" }, - { + "image_file/cc61b14a-59d9-477b-8cb1-43c4ee4cf434": { "content-type": "image/tiff; dcp-type=data", "crc32c": "1285ec2c", "indexed": false, @@ -2688,7 +2688,7 @@ "uuid": "9a71aa79-aa5e-41ca-89ed-2d5eaea98840", "version": "2019-04-03T105645.832519Z" }, - { + "image_file/33d332c9-aefe-4db5-8830-b8daddaed0d2": { "content-type": "image/tiff; dcp-type=data", "crc32c": "ee12e15f", "indexed": false, @@ -2700,7 +2700,7 @@ "uuid": "bec2697f-31b6-4db5-888a-024379f3d13f", "version": "2019-04-03T105646.096587Z" }, - { + "image_file/bb3b6fc7-0902-432d-bad1-6b3f61951314": { "content-type": "application/json; dcp-type=data", "crc32c": "d148a0e3", "indexed": false, @@ -2712,7 +2712,7 @@ "uuid": "194db0d1-dfca-44d7-9ad7-194a9e091d32", "version": "2019-04-03T105646.365296Z" }, - { + "image_file/2b734e88-3a33-4c73-92bb-82e0b8f8c13b": { "content-type": "application/json; dcp-type=data", "crc32c": "3c1c81b7", "indexed": false, @@ -2724,7 +2724,7 @@ "uuid": "57e036f8-063a-47fe-b668-499222390e95", "version": "2019-04-03T105646.657106Z" } - ], + }, "metadata": { "imaged_specimen/87f58f88-ef8b-4323-bd19-cde1a2497b59": { "describedBy": "https://schema.staging.data.humancellatlas.org/type/biomaterial/2.0.7/imaged_specimen", diff --git a/test/hca_metadata_api/cans/staging/eca05046-3dad-4e45-b86c-8720f33a5dde.2019-03-17T220646.332108Z.json b/test/hca_metadata_api/cans/staging/eca05046-3dad-4e45-b86c-8720f33a5dde.2019-03-17T220646.332108Z.json index 30a021c6e..fce57ca57 100644 --- a/test/hca_metadata_api/cans/staging/eca05046-3dad-4e45-b86c-8720f33a5dde.2019-03-17T220646.332108Z.json +++ b/test/hca_metadata_api/cans/staging/eca05046-3dad-4e45-b86c-8720f33a5dde.2019-03-17T220646.332108Z.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/6380c3bc-8bc3-459b-aea3-05dd6c0842ef": { "content-type": "application/gzip; dcp-type=data", "crc32c": "da1a6040", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "46ab4893-bb4a-43fa-bc86-22f0d89fddf6", "version": "2019-03-17T220644.137081Z" }, - { + "sequence_file/ceb4dfaa-ecaf-4757-ae54-9d83707f66cc": { "content-type": "application/gzip; dcp-type=data", "crc32c": "0eee0a0a", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "2a2b38af-9776-41c8-b643-2e094ac1c58b", "version": "2019-03-17T220644.507486Z" }, - { + "sequence_file/5201d410-d789-4df6-b3fd-9edac998e5f3": { "content-type": "application/gzip; dcp-type=data", "crc32c": "51ffe105", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "04a1ab2c-e522-4d73-a881-effa1d9492d1", "version": "2019-03-17T220644.766900Z" } - ], + }, "metadata": { "cell_suspension/74a06f8b-dff1-44d2-b1a6-99e3d14b69d1": { "describedBy": "https://schema.staging.data.humancellatlas.org/type/biomaterial/9.0.0/cell_suspension", diff --git a/test/hca_metadata_api/test.py b/test/hca_metadata_api/test.py index fa8398219..6ae9ac707 100644 --- a/test/hca_metadata_api/test.py +++ b/test/hca_metadata_api/test.py @@ -391,7 +391,7 @@ def _assert_bundle(self, uuid, version, manifest, metadata, links, # fact that dict instances aren't hashable and to ensure that no # redundant copies are made. self.assertEqual(set(id(f.manifest_entry.json) for f in bundle.files.values()), - set(id(me) for me in manifest if not me['indexed'])) + set(id(me) for me in manifest.values() if not me['indexed'])) biomaterials = bundle.biomaterials.values() @@ -695,8 +695,8 @@ def test_missing_mandatory_checksums(self): with self.assertRaises(TypeError) as cm: Bundle(uuid=uuid, version='', - manifest=[ - { + manifest={ + '': { 'uuid': uuid, 'version': '', 'name': '', @@ -705,7 +705,7 @@ def test_missing_mandatory_checksums(self): 'content-type': '', **case } - ], + }, metadata={}, links_json={}) self.assertEqual(cm.exception.args[0], 'Property cannot be absent or None') @@ -717,7 +717,7 @@ def test_name_substitution(self): version = '2019-02-02T065454.662896Z' manifest, metadata, links = self._canned_bundle('prod', uuid, version) - files_before = [f['name'] for f in manifest] + files_before = [f['name'] for f in manifest.values()] with_bang_before = set(f for f in files_before if '!' in f) expected_bang_before = { '9ea49dd1-7511-48f8-be12-237e3d0690c0.zarr!.zattrs', @@ -747,7 +747,7 @@ def test_name_substitution(self): entity_json_file_names = set(e.json['file_core']['file_name'] for e in bundle.entities.values() if isinstance(e, (AnalysisFile, SequenceFile))) - for files_after in set(bundle.manifest.keys()), entity_json_file_names: + for files_after in {e.name for e in bundle.manifest.values()}, entity_json_file_names: with_bang_after = set(f1 for f1 in files_after if '!' in f1) self.assertEqual(set(), with_bang_after) with_slash_after = set(f1 for f1 in files_after if '/' in f1) diff --git a/test/indexer/data/00f48893-5e9d-52cd-b32d-af88edccabfa.dss.hca.json b/test/indexer/data/00f48893-5e9d-52cd-b32d-af88edccabfa.dss.hca.json index 0827d6abb..11f6fa185 100644 --- a/test/indexer/data/00f48893-5e9d-52cd-b32d-af88edccabfa.dss.hca.json +++ b/test/indexer/data/00f48893-5e9d-52cd-b32d-af88edccabfa.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/e0efcd8d-8433-4b40-9eee-11dafb699a5a": { "name": "Retina_Wong_scRNA_Sample5_I1.fastq.gz", "uuid": "07b45ad4-7797-4c16-bfae-493fb41d6600", "version": "2019-09-13T09:16:27.260339Z", @@ -13,7 +13,7 @@ "sha256": "cc6bf034743ed5bf781320deeceb119b4584a7854d922b59f05392d6cd5cc737", "s3_etag": "b9223d5e376a061971bd23fb78e25fd8-13" }, - { + "sequence_file/6d52232d-dc77-4070-bdb1-9bb0ee59d309": { "name": "Retina_Wong_scRNA_Sample5_R1.fastq.gz", "uuid": "09eb8fc6-9e27-4f08-87c5-bfccf918ee12", "version": "2019-09-13T09:16:28.234453Z", @@ -26,7 +26,7 @@ "sha256": "62495704a4bb9a99543fd2143ec577d7b4c106c57b7de37d5c8ed9e002152e5d", "s3_etag": "e3b61e35217b7ed1526704c92446e18a-47" }, - { + "sequence_file/30040306-be5c-48f9-b221-e666e279ab5b": { "name": "Retina_Wong_scRNA_Sample4_I1.fastq.gz", "uuid": "1985c53a-b78f-4d9e-9563-dffed8207efd", "version": "2019-09-13T09:16:23.710869Z", @@ -39,7 +39,7 @@ "sha256": "fbb183a7608f5c4b98e0d9a2f4f77b843d24dcd727f0d5e4ea8111de7d9b22b2", "s3_etag": "f393918b58d786a89c467455152aa66e-17" }, - { + "analysis_file/7a96a0c2-e22a-57ad-ac46-4c2433a63d94": { "name": "262f55a3-d03d-49ae-8080-1a6208fddb4f.bam", "uuid": "20329887-aab3-55fb-ba2c-e3eb27a20f6d", "version": "2021-02-03T20:52:24.000000Z", @@ -50,7 +50,7 @@ "crc32c": "c844464d", "sha256": "7a1ae83ca759edadf571751156b4482f592bda1224ae3bf8c7baccd1a2373b80" }, - { + "sequence_file/f6407a7a-eecc-4735-a96a-b8bb634118e4": { "name": "Retina_Wong_scRNA_Sample2_I1.fastq.gz", "uuid": "27622c20-c017-4a98-b62c-76035758bc09", "version": "2019-09-13T09:16:27.588981Z", @@ -63,7 +63,7 @@ "sha256": "4d2a000eb5fe6eac0926812796794f265f1a1438346c30a2d459ddd3a0f3362c", "s3_etag": "0f3a2d1294d0e1cb0a2f504adc2aefaf-34" }, - { + "sequence_file/b01b2e61-3ebd-48cc-b071-f2e8cb42ff7c": { "name": "Retina_Wong_scRNA_Sample1_I1.fastq.gz", "uuid": "39ae3998-72a4-41ba-b00f-526bfecb8ca2", "version": "2019-09-13T09:16:26.837580Z", @@ -76,7 +76,7 @@ "sha256": "979ff8bf675f4a3d56bb83e80e64641656bbfd1b7bfc805023445cf53fdd5450", "s3_etag": "ad7a88538e8a9c00b6d904c7eb00318c-32" }, - { + "analysis_file/43598186-06cd-5f4b-95d9-fecb0a35d3ab": { "name": "ad220152-0eb4-4f85-a03e-c7e81ea3f167.bam", "uuid": "3ac6d370-c10b-54a2-a1ed-52f661aae1d7", "version": "2021-02-03T20:52:32.000000Z", @@ -87,7 +87,7 @@ "crc32c": "f82a27d8", "sha256": "874aaeeaf5d963df1fdc30a399250427873d5594457eece6603ae5f085930320" }, - { + "sequence_file/15f64718-69cf-462c-9704-e8a1f54c27c8": { "name": "Retina_Wong_scRNA_Sample3_R2.fastq.gz", "uuid": "3e2b02f8-5b3b-4ab2-8ef4-7ae8a856854e", "version": "2019-09-13T09:16:27.026166Z", @@ -100,7 +100,7 @@ "sha256": "33ed54a5916930322b59f2e66ef840b7ae347da5fdec6a2443e5dceeb577b8a9", "s3_etag": "7d5599e41f686131c8d7da5b5f69f80f-143" }, - { + "sequence_file/a7b21a25-e76e-420d-8892-538062bfefbf": { "name": "Retina_Wong_scRNA_Sample3_R1.fastq.gz", "uuid": "3e3505f9-4f47-402f-bfb8-960af07f91da", "version": "2019-09-13T09:16:26.831163Z", @@ -113,7 +113,7 @@ "sha256": "d06f4c866cb6f475692f322ae7415a188ae13fc3c37965daa101f73b425a8a47", "s3_etag": "fd9244e048c7d9e1f63f113736701ed5-43" }, - { + "analysis_file/a7915c55-1d80-5724-9c81-6dd0a9130361": { "name": "262f55a3-d03d-49ae-8080-1a6208fddb4f.loom", "uuid": "4b611790-d17b-5938-86c4-695480abb4ef", "version": "2021-02-03T21:06:32.000000Z", @@ -124,7 +124,7 @@ "crc32c": "a9fb633c", "sha256": "3acf571a7329dece2fa69d92663bf6ea1cfe662b22e0ac8ab46b89ea8b1b5ba8" }, - { + "sequence_file/9f8f5212-0749-460b-9a46-2949dea45d52": { "name": "Retina_Wong_scRNA_Sample4_R2.fastq.gz", "uuid": "5140b603-8cc1-4566-9043-e68145efbbd6", "version": "2019-09-13T09:16:24.192766Z", @@ -137,7 +137,7 @@ "sha256": "76f22d617806fffc64137ef2449e1e827a6d889c0b8e6fc0e38274f68c9f556d", "s3_etag": "012e21be88b6293dfc864c018f67ccf5-147" }, - { + "analysis_file/d90280cc-a294-57de-b350-5234a5278c19": { "name": "1116b396-448e-4dd1-b9c9-78357c511e15.loom", "uuid": "5a11ed4f-41d1-53b4-9e62-3c0bbd04b4b0", "version": "2021-02-03T21:08:31.000000Z", @@ -148,7 +148,7 @@ "crc32c": "9d1f0a8c", "sha256": "733a4a7db49e1ef08a7f5631f3e658f49233c1d468d6d3da0a3f7c02621fab27" }, - { + "sequence_file/52149e21-dcd2-4288-a5eb-e526c3dcf745": { "name": "Retina_Wong_scRNA_Sample5_R2.fastq.gz", "uuid": "5ceca6a5-2bc0-4b38-908b-01d4fec71d9f", "version": "2019-09-13T09:16:28.462542Z", @@ -161,7 +161,7 @@ "sha256": "46cc1e1fdd748e40227ccbb1eabd5f6456c7ef31faa934cbcb68a0707cb25427", "s3_etag": "a32e912ba25ab2702a47e31082806ee5-189" }, - { + "analysis_file/b949e4b6-c3fb-58b4-865b-40cb3ef2b6c6": { "name": "1116b396-448e-4dd1-b9c9-78357c511e15.bam", "uuid": "640e64f1-6ada-5d12-a772-fe4ed4eeecea", "version": "2021-02-03T20:52:27.000000Z", @@ -172,7 +172,7 @@ "crc32c": "2ad80e5f", "sha256": "45e831be417a5bbf75b7d0a0a1a024ac9d9f22971115fd56f5b0e5b346e87a71" }, - { + "analysis_file/70ff6783-333f-5c1b-8208-3b495df95620": { "name": "8b81f0c2-3b57-4072-8a10-c169fece543e.bam", "uuid": "76fc7a86-572e-5e00-ac87-b55d81a8515d", "version": "2021-02-03T20:52:29.000000Z", @@ -183,7 +183,7 @@ "crc32c": "a8427ce7", "sha256": "7098a7b9661d3be54f376c0e8b63ec7efbf2bf88ec389b79efbd7956f930519d" }, - { + "sequence_file/39255288-6791-45b0-ac7e-b3ef4c981a3b": { "name": "Retina_Wong_scRNA_Sample4_R1.fastq.gz", "uuid": "79f589cb-32a2-4ba6-a091-7c5d820d02df", "version": "2019-09-13T09:16:23.982952Z", @@ -196,7 +196,7 @@ "sha256": "bb61a115aed93057cbd1dc8fb08e68ed5615cc8dc926a9b3336ea0ad58eef648", "s3_etag": "be870140031523af537bbb3861fff77e-44" }, - { + "analysis_file/4c866eb3-7470-5ee8-91b9-942246f19fde": { "name": "2f8a07c2-4a6b-47ac-a304-0dead66eee9e.bam", "uuid": "820c396e-248b-5b4e-91b9-d7801cd9725f", "version": "2021-02-03T20:52:12.000000Z", @@ -207,7 +207,7 @@ "crc32c": "a068a3b9", "sha256": "1ef67647e5113fcbebbf04fa7e57aaa220ae35229a9f28af289708ab4c975298" }, - { + "analysis_file/bc111cd3-bf54-57ce-8af1-88f5997a0a9d": { "name": "ad220152-0eb4-4f85-a03e-c7e81ea3f167.loom", "uuid": "98ab4428-d66a-57b7-a802-83fdec68d744", "version": "2021-02-03T21:06:08.000000Z", @@ -218,7 +218,7 @@ "crc32c": "72dc7f49", "sha256": "c9f957119f9a7d5f7b05d338ea622a7c6f1384bcf6e72d290f1f7738df8f3f86" }, - { + "sequence_file/6bd884d2-fccf-4227-8efc-184751527dfb": { "name": "Retina_Wong_scRNA_Sample2_R1.fastq.gz", "uuid": "9d720856-425d-404f-bb5b-51c225e92dd6", "version": "2019-09-13T09:16:27.766043Z", @@ -231,7 +231,7 @@ "sha256": "705302cc9b0e08a951d2cca198da496da212426e3f69153381245bbd9cbc2e20", "s3_etag": "8276b9dd2ef8b1174cb233d0aaf0f63a-91" }, - { + "analysis_file/f51568e8-b84c-504b-82f0-3ad5975d4bcb": { "name": "2f8a07c2-4a6b-47ac-a304-0dead66eee9e.loom", "uuid": "a301dcb4-6a8f-5ef8-af7e-6a9fe44058e8", "version": "2021-02-03T21:12:10.000000Z", @@ -242,7 +242,7 @@ "crc32c": "3b799574", "sha256": "285d82ac997f24fcd3543a47407bb84ed18babeb0186ecda4b3b208ba98e7a09" }, - { + "sequence_file/799f314f-7c6c-4981-be36-8e1310bf38e6": { "name": "Retina_Wong_scRNA_Sample3_I1.fastq.gz", "uuid": "ad5fed6e-b0e1-40a0-82e8-0cfc2eca0786", "version": "2019-09-13T09:16:26.425735Z", @@ -255,7 +255,7 @@ "sha256": "700d3f3197a2f3f24273ab664dfa8e06c7a97ee8108c09b01de9e85f04f5390d", "s3_etag": "fbb100a856afca4d91f70afb015c2b5b-16" }, - { + "sequence_file/1016adeb-cdc3-47d6-a89e-771c763dd2e7": { "name": "Retina_Wong_scRNA_Sample2_R2.fastq.gz", "uuid": "b9ab7f46-071a-48cf-bc7f-fdb9c8dd0c22", "version": "2019-09-13T09:16:27.945734Z", @@ -268,7 +268,7 @@ "sha256": "ba581a5282522ad15266c7843b1d18181e923c44f6ad9840184842af252e8f10", "s3_etag": "e2d161f5590706c0128c1aa41cc9b3eb-313" }, - { + "analysis_file/fec17064-9014-50b0-9e1a-dfaef2fbb4fc": { "name": "wong-retina-human-eye-10XV2.loom", "uuid": "bd98f428-881e-501a-ac16-24f27a68ce2f", "version": "2021-02-11T23:11:45.000000Z", @@ -279,7 +279,7 @@ "crc32c": "d1b06ce5", "sha256": "6a6483c2e78da77017e912a4d350f141bda1ec7b269f20ca718b55145ee5c83c" }, - { + "analysis_file/759bad57-b725-5346-b3ff-9fb80b27cfe7": { "name": "8b81f0c2-3b57-4072-8a10-c169fece543e.loom", "uuid": "bdd02a5f-2007-56f9-abeb-8c2c5c99a08e", "version": "2021-02-03T21:08:27.000000Z", @@ -290,7 +290,7 @@ "crc32c": "567bee09", "sha256": "52d70178293e01248f66928edaa01191c204e5169fa2b66b2008ddb4b0d4a412" }, - { + "sequence_file/33682180-6cdf-4d0c-9fe0-e1c029ac13b2": { "name": "Retina_Wong_scRNA_Sample1_R1.fastq.gz", "uuid": "d65c128c-3bb7-4da3-8d56-b60007cf8d15", "version": "2019-09-13T09:16:27.063168Z", @@ -303,7 +303,7 @@ "sha256": "1a22499817f26c307ffe7876e2be5a2bdc9ab8aee2da3c6ca89af2bf3ab903e1", "s3_etag": "3c7331aa4273cc9d75e234311833acf7-89" }, - { + "sequence_file/e92c42c7-f238-44ea-b147-e199b768d450": { "name": "Retina_Wong_scRNA_Sample1_R2.fastq.gz", "uuid": "d94b88bc-3507-4644-a221-1c99861895e2", "version": "2019-09-13T09:16:27.300840Z", @@ -316,7 +316,7 @@ "sha256": "e67ad7cfc615175e9c0f8940909965b4fa0e376253e8969596d638603bac7e8c", "s3_etag": "977e306603976db10215fba42f753254-308" } - ], + }, "metadata": { "analysis_file/43598186-06cd-5f4b-95d9-fecb0a35d3ab": { "describedBy": "https://schema.humancellatlas.org/type/file/6.2.0/analysis_file", diff --git a/test/indexer/data/02e69c25-71e2-48ca-a87b-e256938c6a98.dss.hca.json b/test/indexer/data/02e69c25-71e2-48ca-a87b-e256938c6a98.dss.hca.json index 2cd6968d4..94433205b 100644 --- a/test/indexer/data/02e69c25-71e2-48ca-a87b-e256938c6a98.dss.hca.json +++ b/test/indexer/data/02e69c25-71e2-48ca-a87b-e256938c6a98.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/c87f6dbf-1062-4e72-a19d-db779f1d3e66": { + "name": "mouse_cortex_S2_L002_R1_001.fastq", "uuid": "035ded30-cc0f-4e93-b675-8496f7146a27", "version": "2021-06-28T14:21:17.506000Z", @@ -13,7 +14,7 @@ "sha256": "f2c91b2abac48d6ac42ac318aaa15a97e67e09c8dfa18a8aea31ea7cd7471940", "s3_etag": "ec65113cc3959679fb3bcb19baab4d12-43" }, - { + "analysis_file/c61a76f4-aebe-4a18-b272-e2e78307bb4a": { "name": "experiment2_mouse_pbs_scp_metadata.txt", "uuid": "04f754f4-1c3c-4eac-a64f-c1a0937cae06", "version": "2021-06-28T14:21:17.989000Z", @@ -26,7 +27,7 @@ "sha256": "b7fbb04eef7332f2bd51e6e52d360cd00aa9e3408fabaf430bd3564d8ac4b31f", "s3_etag": "d98cf4712057af4eae7962bf2a6bfb23" }, - { + "sequence_file/bca273dd-1758-4439-b7e0-745755dcffa0": { "name": "mouse_cortex_S2_L001_R2_001.fastq", "uuid": "16c2629e-f042-4eef-a40e-3643dacf9926", "version": "2021-06-28T14:21:17.481000Z", @@ -39,7 +40,7 @@ "sha256": "663698584d3d5ff95977f1dc8fd540fa71f2c8ed14faecb540df97e7862a784b", "s3_etag": "106ccbe979fe820b6104926cb0d66092-61" }, - { + "sequence_file/d86c34c4-0aeb-4f50-a53e-5a0983c906b7": { "name": "mouse_cortex_S2_L004_R1_001.fastq", "uuid": "1a2e6680-19be-406a-852f-51eda87d7e42", "version": "2021-06-28T14:21:17.582000Z", @@ -52,7 +53,7 @@ "sha256": "bde66de4a5d354100c314f5d1a7529c09e41602426e97fd83f8383bc9d9b6181", "s3_etag": "ec5dc1c2cd475c640ef3bb0885b11f75-43" }, - { + "sequence_file/6b94ce38-27b9-460e-ab1b-bceb18275c71": { "name": "mouse_cortex_S2_L001_I1_001.fastq", "uuid": "3cd05b67-22cf-4bea-988a-7a1fb8104fa9", "version": "2021-06-28T14:21:17.456000Z", @@ -65,7 +66,7 @@ "sha256": "f59d61941571d8f64c54ca537511fa6688488771bde7c522838da98c8839a038", "s3_etag": "72356e1061ae68e3a7be385124c5e322-28" }, - { + "analysis_file/ad3f7b5e-77ed-4df1-a9af-5355f7951af4": { "name": "experiment2_mouse_pbs_scp_X_diffmap_pca_coords.txt", "uuid": "43f5d587-8891-45ec-b415-8e82b33fec7d", "version": "2021-06-28T14:21:17.965000Z", @@ -78,7 +79,7 @@ "sha256": "335d0e738c2b28ffea73c03c89a85d05d02dbdb6efc8769276533380d5916791", "s3_etag": "e3c262117b366ac8dd8f70f1ec836965" }, - { + "analysis_file/cde6359a-a2b0-421d-a898-c53278c21399": { "name": "experiment2_mouse_pbs_scp_X_tsne_coords.txt", "uuid": "4a8b396c-7f26-4b6b-b06c-e445bff36ab3", "version": "2021-06-28T14:21:17.977000Z", @@ -91,7 +92,7 @@ "sha256": "c48c80f86597468dbb1c8e5cfacd46ca37ab18203e4285e787314a9afce4e7dc", "s3_etag": "078f88af590b20e672210ac06f349f66" }, - { + "analysis_file/004d18f2-f23c-4fd1-af2e-f0a6a9e13cc9": { "name": "experiment2_mouse_pbs_scp_barcodes.tsv", "uuid": "50d634ef-77b0-4339-a9c3-9a83bd9e5ab6", "version": "2021-06-28T14:21:17.953000Z", @@ -104,7 +105,7 @@ "sha256": "7313b430ea480a928fc42dcbe297a96e577a4b8def5acd500e5cf7aab7498285", "s3_etag": "03a8156f979f3e0e9d88e26fcde6e2f5" }, - { + "sequence_file/989f8f5d-710f-4529-b89b-0bfbf592951c": { "name": "mouse_cortex_R1.fastq", "uuid": "59822819-0515-4b9f-beb6-5836aa2df759", "version": "2021-06-28T14:21:17.626000Z", @@ -117,7 +118,7 @@ "sha256": "4471fac7eeee5f2d76236263d3e8ad69c06cbfe2bcd8b6e8fc0236a2718a110d", "s3_etag": "21fddfe43b4970c78d126e38c647bacb-16" }, - { + "sequence_file/a97f4858-0f13-405a-8b28-98ee5f997999": { "name": "mouse_cortex_S2_L003_R2_001.fastq", "uuid": "64eeaef0-b669-4637-9333-466c78643c09", "version": "2021-06-28T14:21:17.557000Z", @@ -130,7 +131,7 @@ "sha256": "173e04d13e9e2d7b223638ac3c2f27ad9a1b722373ff7e37ab7aa6ae56b4b21e", "s3_etag": "dc517e665a37fc8b6c71ac7b66c8fddb-63" }, - { + "sequence_file/1697aa82-0910-44e6-ac07-2020248e1977": { "name": "mouse_cortex_I1.fastq", "uuid": "694df5ad-6907-48ef-9a80-46681e9c294b", "version": "2021-06-28T14:21:17.614000Z", @@ -143,7 +144,7 @@ "sha256": "a75c91a4f96a11ac205d36750badc1f747628c15bfb1ac27c41c3bfd5c37cff7", "s3_etag": "7badf646dc3cad2a10fbd5e07cd3102c-11" }, - { + "analysis_file/6ccd1b16-d3a9-4ba4-9dda-99aa882dfc2c": { "name": "experiment2_mouse_pbs_scp_genes.tsv", "uuid": "6b8fc3ff-4e32-4f2c-97ae-d634066f87db", "version": "2021-06-28T14:21:17.941000Z", @@ -156,7 +157,7 @@ "sha256": "f49a568c569b330d7215fcf4a2bcf02d7aff08f8ab414a03059db859b9e3e054", "s3_etag": "cf3e64f665fe6159bdc5bf4321d4d8cb" }, - { + "sequence_file/000d1e4b-4c1f-40de-8fd6-8a3d1a26e1d2": { "name": "mouse_cortex_S2_L003_I1_001.fastq", "uuid": "7113cb1e-7289-4fe2-ba15-bbe0620bd808", "version": "2021-06-28T14:21:17.533000Z", @@ -169,7 +170,7 @@ "sha256": "23dfaa860c9d8c6a0e08c30094f125ea2436caaa20b5119b5bca55054a8fc5e4", "s3_etag": "ec5e5a66574d78665b2dbdcd53416081-29" }, - { + "sequence_file/06d54587-f54b-490c-8d29-3d84025e3b14": { "name": "mouse_cortex_S2_L002_R2_001.fastq", "uuid": "87e562e3-cb28-4239-bdf6-5c562d35963a", "version": "2021-06-28T14:21:17.521000Z", @@ -182,7 +183,7 @@ "sha256": "966596104c5d1a00d0d3ed59204321c6c85e5762672834aa4c0d00c6b44581ba", "s3_etag": "d0961bee9d2ebb0e1f89f14e26997641-64" }, - { + "analysis_file/4d64269d-bd3f-46c1-a179-1c27e1caeb30": { "name": "experiment2_mouse_pbs_scp_matrix.mtx", "uuid": "9601aedb-6de9-4a32-8bd9-ed8b78b256e1", "version": "2021-06-28T14:21:17.929000Z", @@ -195,7 +196,7 @@ "sha256": "bff4eabd5df1ab167efc180791d7d189fc3c79f216450cffacab2cb763e3c171", "s3_etag": "738b071be0c056fe5cc01460b2908836-2" }, - { + "sequence_file/eacaacbb-f514-49bb-bfbf-ccb123c5bf2e": { "name": "mouse_cortex_S2_L004_R2_001.fastq", "uuid": "9c473261-cbb8-462f-ae4a-778a3ae8c566", "version": "2021-06-28T14:21:17.599000Z", @@ -208,7 +209,7 @@ "sha256": "5188dc19099d8c3f5d7fc8eea66a9de94439073d6459071fbf0ec6b4f65aaa66", "s3_etag": "ec3be90bee96d8b23dcc953a4bfbb072-65" }, - { + "sequence_file/9610cb70-57c1-466d-b9c9-faa22aa7b917": { "name": "mouse_cortex_S2_L001_R1_001.fastq", "uuid": "9fa34db2-7968-4749-a83f-91ec2b12982d", "version": "2021-06-28T14:21:17.469000Z", @@ -221,7 +222,7 @@ "sha256": "fa2329cd8e2bdfa80b9fe746f69c266a7851e32b2ea50abf54677ccb14e00f0a", "s3_etag": "d3d453961f7e7c93333d6225d4e6f182-41" }, - { + "sequence_file/49eefca3-6441-4a63-a0f0-178d6fc2573d": { "name": "mouse_cortex_R2.fastq", "uuid": "b5a30ee7-6c2f-452a-b2aa-f032731b8b17", "version": "2021-06-28T14:21:17.637000Z", @@ -234,7 +235,7 @@ "sha256": "a09fba3b9062f341f3f8faaa74b9747379b28b98e3a951a27804a8830d6750d8", "s3_etag": "a79201831572e399a524d3d652e7bc2a-23" }, - { + "sequence_file/7c1802b3-0be5-4202-b14e-141974ca7fb3": { "name": "mouse_cortex_S2_L002_I1_001.fastq", "uuid": "d3965eac-1d56-4809-bf64-8291c9bbdf2f", "version": "2021-06-28T14:21:17.493000Z", @@ -247,7 +248,7 @@ "sha256": "204f41cf51e95a402700052c0e8d70b06d01f7122b9fd5e40c141b7db53f2cb6", "s3_etag": "3a85b50188d8766f46c62f35bb0d3e3e-29" }, - { + "sequence_file/dc5b2d96-ba74-4bd0-bcf0-747548e1c6d7": { "name": "mouse_cortex_S2_L004_I1_001.fastq", "uuid": "d5925eb4-5192-4bc0-83e4-5c6d847118ef", "version": "2021-06-28T14:21:17.569000Z", @@ -260,7 +261,7 @@ "sha256": "0b6d42af920f73359dc9ceaa2d27c39d566bd2bd1bdf53ac92a68a1cad073148", "s3_etag": "7f5ae23a8f94d968a687aafb0fa6ef57-30" }, - { + "sequence_file/ee52ecd1-68c0-48dd-82c2-6d3e45869b38": { "name": "mouse_cortex_S2_L003_R1_001.fastq", "uuid": "fd13fc62-8767-45d7-aa48-8a140f9a5005", "version": "2021-06-28T14:21:17.545000Z", @@ -273,7 +274,7 @@ "sha256": "26617f9afe828346983a9b372d493abbc48580293aa1eb17b14d69a9a9103020", "s3_etag": "9e3d18fa00322a7bd0f2b77dcab8d605-42" } - ], + }, "metadata": { "process/02e69c25-71e2-48ca-a87b-e256938c6a98": { "insdc_experiment": { diff --git a/test/indexer/data/04836733-0449-4e57-be2e-6f3b8fbdfb12.dss.hca.json b/test/indexer/data/04836733-0449-4e57-be2e-6f3b8fbdfb12.dss.hca.json index 73ee6694a..90c95400a 100644 --- a/test/indexer/data/04836733-0449-4e57-be2e-6f3b8fbdfb12.dss.hca.json +++ b/test/indexer/data/04836733-0449-4e57-be2e-6f3b8fbdfb12.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/dd8ac880-75c4-4fe8-89e3-2cc41dad784a": { "name": "Young3_S11_L002_R2_001.fastq.gz", "uuid": "00823629-0112-408a-bcf2-41833b245e93", "version": "2021-05-10T23:24:56.599000Z", @@ -13,7 +13,7 @@ "sha256": "859263f852d69f4d13b35843ca8e812e5aac440b1acd6929072ea4aee411474c", "s3_etag": "681b47e8bb8639787556481328f0c085-21" }, - 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{ + "sequence_file/5b80431f-c95a-41ef-8aa7-98816f00e4d6": { "name": "Adult2_S34_L004_R2_001.fastq.gz", "uuid": "ea9a283e-ec06-432a-8bf3-40133f8f9cfc", "version": "2021-05-10T23:24:59.984000Z", @@ -4355,7 +4355,7 @@ "sha256": "11d9b5a03faad3ab863c9d0711d0604726a08ac92fe6ef6c0fb2b1cc015343b2", "s3_etag": "3b6796491dcb2688157264e07e63d07f-32" }, - { + "sequence_file/82fc0df9-9828-433e-ac6d-73f4bbceefcf": { "name": "Fetal1_S47_L004_R1_001.fastq.gz", "uuid": "ecfb5b99-5606-483c-817b-fbcce96ee9be", "version": "2021-05-10T23:25:07.230000Z", @@ -4368,7 +4368,7 @@ "sha256": "dac9aad6952a0b1a0a2a27ab331d6a555145f250b5210141bfd6f6126b4bcef4", "s3_etag": "881adaa0fbdd815cc9dcde9cdc649ae8-12" }, - { + "sequence_file/96f4d488-e081-4b54-b12a-b2d9546bfc17": { "name": "Adult2_S34_L002_R2_001.fastq.gz", "uuid": "ed3df4c8-d006-4edc-b5fb-65af588b5984", "version": "2021-05-10T23:24:59.909000Z", @@ -4381,7 +4381,7 @@ "sha256": "43a1cade69f629038099d46b4df277ff71b1fa5514e8807d5cf09e094a697732", "s3_etag": "16393b84fe995a25ec5838cf7429f244-34" }, - { + "sequence_file/c46f9eec-ab37-4d9e-ab8c-d4dcdf1852f7": { "name": "Fetal1_S46_L001_R1_001.fastq.gz", "uuid": "ed4c7767-277c-4d39-89cf-6144161985d2", "version": "2021-05-10T23:24:57.218000Z", @@ -4394,7 +4394,7 @@ "sha256": "1dd43fe8470cb496c34355c96620c6d403f560b2f9d10822a8958adf9951ec5b", "s3_etag": "4522b7f4dcc5a40d9b3326316b3d22e3-13" }, - { + "sequence_file/7f46ab20-26fa-493e-98c4-24d558f4a0ce": { "name": "Adult2_S35_L002_R2_001.fastq.gz", "uuid": "eff0eba9-ed02-43c2-9861-d34edfaf9f30", "version": "2021-05-10T23:24:59.472000Z", @@ -4407,7 +4407,7 @@ "sha256": "1f3e8f56e1c6dfa3b7e6317fa46daa9173e7b251256450a6ee2c70b565f3a8ba", "s3_etag": "f8c11487f8fcf12d26e6c471abef2a30-28" }, - { + "sequence_file/0dbf8a13-52a5-48ad-b48e-9fb0ef358dfc": { "name": "Adult2_S33_L004_R1_001.fastq.gz", "uuid": "f00513d4-c39b-4607-b43e-51bc36293e3d", "version": "2021-05-10T23:24:59.819000Z", @@ -4420,7 +4420,7 @@ "sha256": "01ca6806bef50f903f96a88435c0808130cf3d7d485ac0205250865109c29799", "s3_etag": "817e79c41185a6f3b6e3be78f5a98320-15" }, - { + "sequence_file/09b831a2-5b60-4753-864e-8af803024437": { "name": "Fetal1_S45_L004_R2_001.fastq.gz", "uuid": "f1b0bc3c-0856-4493-95af-6b5ec42d09cc", "version": "2021-05-10T23:24:57.193000Z", @@ -4433,7 +4433,7 @@ "sha256": "8ebbb5c587b66016c75367dffaab51bd5903c5e431b68c70f0bc52dc292a9a5f", "s3_etag": "ae78f3490ed29c62b42ff76704a4eac5-38" }, - { + "sequence_file/ff19abb9-e4d9-4fc4-ad5e-1fbafcbdedf2": { "name": "Young3_S9_L001_R2_001.fastq.gz", "uuid": "f1ba59ae-f42b-403b-a777-69ced3930293", "version": "2021-05-10T23:24:56.235000Z", @@ -4446,7 +4446,7 @@ "sha256": "bcc7d962f7e0858410da1314e8293d849a347728a2013a163676004ded8eb5f5", "s3_etag": "8d98d9869ca388af258dd7681a6753dc-17" }, - { + "sequence_file/5be8906f-0831-422d-896e-b099d5a23e13": { "name": "Adult1_S6_L002_I1_001.fastq.gz", "uuid": "f26b81f5-8f36-4998-90c0-0f30ea866f41", "version": "2021-05-10T23:24:59.133000Z", @@ -4459,7 +4459,7 @@ "sha256": "c9c6c651278a2966fa2dadd3801a10d3793966aa2f527ed1270e338d903c4c64", "s3_etag": "8197b6cae2352f5f62ea0476c5562daa-5" }, - { + "sequence_file/dabb5028-64d2-4dbc-89a3-0cf6079ad0cb": { "name": "Adult1_S7_L002_R2_001.fastq.gz", "uuid": "f28f5241-9275-48ef-9779-0356be81a14f", "version": "2021-05-10T23:24:56.786000Z", @@ -4472,7 +4472,7 @@ "sha256": "47308fa009bb42039782ee43dc53dd7fa9247d01b7d9d174d07cd9a28722abac", "s3_etag": "08dd2f4d47c7d74bb94b84ff20559e54-46" }, - { + "sequence_file/38601526-8448-4253-807b-70878c374901": { "name": "Adult1_S5_L001_R1_001.fastq.gz", "uuid": "f296caba-7bdc-47d1-a7ef-b39e358d0e3e", "version": "2021-05-10T23:24:56.737000Z", @@ -4485,7 +4485,7 @@ "sha256": "89ea95bcfdef3f587b85bf1edb0f9c177aaf9b2ca9118c965bd71833973ec1fd", "s3_etag": "f37e5654a27fe6bde5e1dd4dfcc41b93-14" }, - { + "sequence_file/dae9b045-0d8d-4944-b8a2-d3b64ad7df34": { "name": "Fetal3_S14_L001_I1_001.fastq.gz", "uuid": "f366ef43-bfe1-4649-9d08-3eef088ff99a", "version": "2021-05-10T23:24:58.249000Z", @@ -4498,7 +4498,7 @@ "sha256": "4f40af704cf259007bd57e274139f0fcc86d000d92eedde41b3c49703476e714", "s3_etag": "7d918181f2d4b88058e16e0daef31837-7" }, - { + "sequence_file/5e25031d-3456-4209-9818-c8882b2623e1": { "name": "Young2_S41_L002_R1_001.fastq.gz", "uuid": "f3e5a38a-c62b-4100-9fcc-18ffbe346be5", "version": "2021-05-10T23:24:55.689000Z", @@ -4511,7 +4511,7 @@ "sha256": "5d0842661549412c3baf9f359abaf8f72408870d1ba3e4887a486a73634e6616", "s3_etag": "6b690deac0528abd537ac5ceef453366-16" }, - { + "sequence_file/7c912919-4b2c-4f4d-bdfe-1988d20aeeed": { "name": "Fetal3_S15_L001_I1_001.fastq.gz", "uuid": "f4b0febc-2a23-436f-916c-2ddb328dddd4", "version": "2021-05-10T23:24:58.402000Z", @@ -4524,7 +4524,7 @@ "sha256": "46a7857eb2f4a9a6bd5200ea59bf9438985d45542309ee65de55abb4975fc8aa", "s3_etag": "787914214494529c4f56ac067637d8ba-6" }, - { + "sequence_file/72b34b3d-f005-48af-81dc-3631873960d8": { "name": "Adult1_S8_L002_I1_001.fastq.gz", "uuid": "f57edc37-d012-4382-8d4b-0e250cafa81d", "version": "2021-05-10T23:24:57.019000Z", @@ -4537,7 +4537,7 @@ "sha256": "c62079cfe23989a2f844f61ae19cc867d24cda8a6834607c40676d204e891a36", "s3_etag": "69005736b5ba1a6b9d84fee15ab99c07-3" }, - { + "sequence_file/99e73efd-4a04-496f-bb32-8f73edb0ae1a": { "name": "Young2_S41_L003_I1_001.fastq.gz", "uuid": "f61ff371-7c67-45cc-af18-e94ed874baba", "version": "2021-05-10T23:24:55.713000Z", @@ -4550,7 +4550,7 @@ "sha256": "a91c9428332d016a8b13a788cbd42ee82f32e9fdb59cc4d7b4e58425a33b1c7a", "s3_etag": "4727dc277e4e9e0bd45a9b9d010d41b6-5" }, - { + "sequence_file/daa6813e-0321-413a-9107-8c814825bf93": { "name": "Young3_S9_L003_R2_001.fastq.gz", "uuid": "f6bd08a6-5630-460c-a1bc-e13a3340f7bc", "version": "2021-05-10T23:24:56.364000Z", @@ -4563,7 +4563,7 @@ "sha256": "c64401fe56bff348c5d32adbafe94bf8f30be76ef549cfeadd883a04615fd670", "s3_etag": "394fcb53d06b04f6b75d0430374b027e-16" }, - { + "sequence_file/c8995918-5491-41bc-ad76-2099c6314fb1": { "name": "Adult2_S36_L004_R1_001.fastq.gz", "uuid": "f7e7009f-d6e8-4fc9-92db-921d32531262", "version": "2021-05-10T23:24:59.705000Z", @@ -4576,7 +4576,7 @@ "sha256": "9fb49f207fc69455ca4a507a501025e9721b7aa4aa1107ab2fb3c219aa2bc173", "s3_etag": "55a85af190a9eb638e89a766657f82bd-13" }, - { + "sequence_file/04066a52-7468-4783-b49c-46e28b076739": { "name": "Adult2_S36_L002_R2_001.fastq.gz", "uuid": "f8153a7e-c5fe-43b9-bb7a-90ea3d059772", "version": "2021-05-10T23:24:59.644000Z", @@ -4589,7 +4589,7 @@ "sha256": "bcb53bac08898359193cf7aa3338d57786816462bf83fced31d13e0163f167b4", "s3_etag": "e83e744695dacb6cd72d441a1c03756b-31" }, - { + "sequence_file/92951c73-28a3-4820-89d6-15a73fa192cf": { "name": "Fetal2run2_S13_L002_R2_001.fastq.gz", "uuid": "f90ae5d8-e31a-4f6d-914e-f37d223ea9d1", "version": "2021-05-10T23:24:57.585000Z", @@ -4602,7 +4602,7 @@ "sha256": "231b938f92b5e6b86ccf0f6799d471e7e52dd5eee3e60a78abcb8f21b95a261c", "s3_etag": "a6c30ecf06c44e1beb7e39b05012fa90-68" }, - { + "sequence_file/2b889dd9-0bd3-412a-967e-74fa9600bb4d": { "name": "Adult1_S6_L004_R2_001.fastq.gz", "uuid": "f9951b26-b6cf-40f1-9a78-37cb8f130b19", "version": "2021-05-10T23:24:59.287000Z", @@ -4615,7 +4615,7 @@ "sha256": "aa882d4208c556d057ff1c03830704e0d573e8364f5bbff2e37f4a9417d60107", "s3_etag": "896ea43d3903b73bf1dc086304ae5416-37" }, - { + "sequence_file/3b7b0bcf-b316-4b0e-9d46-f8d44a399774": { "name": "Fetal3_S13_L002_I1_001.fastq.gz", "uuid": "fa17dd22-2d46-44dd-bf29-7ba21c575a6c", "version": "2021-05-10T23:24:58.136000Z", @@ -4628,7 +4628,7 @@ "sha256": "000d3f4b5239981127ea8f0e56178fd6623cbe42116c2889bd2e01d6ca750e7c", "s3_etag": "fb61593bc6ced0f44ccb316a7d531b17-7" }, - { + "sequence_file/43f476f9-cbfc-431a-a774-5885904b434c": { "name": "Fetal1_S47_L003_R2_001.fastq.gz", "uuid": "fb59546f-ca17-40ae-b0b8-ca16c1b94de9", "version": "2021-05-10T23:25:06.889000Z", @@ -4641,7 +4641,7 @@ "sha256": "def662d3aec2c90fab01907c0074c2bb2e214bdfd59981ef67371804a0214dcc", "s3_etag": "7071366df987c4f6b239137a439acbe6-28" }, - { + "sequence_file/d5aab272-e387-4bae-aeb0-987928e0c001": { "name": "Fetal3_S13_L002_R1_001.fastq.gz", "uuid": "fb71e3ae-31d9-4ce1-8d14-25955525b515", "version": "2021-05-10T23:24:58.148000Z", @@ -4654,7 +4654,7 @@ "sha256": "c0bfe8c95019fe59b35950d07518932e5e5f94af2552e85c07c1757fc2318ba1", "s3_etag": "2a5ca77f9c0a68cf5db63140e5b88644-24" }, - { + "sequence_file/17883ec7-0ff4-4c57-b2d0-2ac130bd3ae8": { "name": "Fetal3_S13_L004_R1_001.fastq.gz", "uuid": "fd5331f0-025b-4370-94bf-a2a2d1812704", "version": "2021-05-10T23:24:58.222000Z", @@ -4667,7 +4667,7 @@ "sha256": "e4a449ab8860bf883eea710ae038b59efa05eb5a8a03c2adfb5657c385e26647", "s3_etag": "bfae7170cbc46297c75622988a1c9d47-23" }, - { + "sequence_file/f29dfd6b-dcb8-4c50-ba95-58c2be9c7a16": { "name": "Young2_S42_L004_R2_001.fastq.gz", "uuid": "fd563e44-5e1a-4dfc-bfbd-42ef32c62d69", "version": "2021-05-10T23:24:55.955000Z", @@ -4680,7 +4680,7 @@ "sha256": "07ef1fb2f9df06edd0b2aa20a2b156f9aeb8bd210b3fba58e667f634c15abcac", "s3_etag": "a2bca3b69da0592c3623d51d4a0400e2-38" }, - { + "sequence_file/868dfde7-2df8-487f-b754-68db8a96ad3a": { "name": "Young3_S9_L003_R1_001.fastq.gz", "uuid": "fe2c65ca-06af-4760-9df8-086a81611a31", "version": "2021-05-10T23:24:56.352000Z", @@ -4693,7 +4693,7 @@ "sha256": "ffeb363b224283997bcfcd7cda154c83431a5ed4774aa1f1d4da6763e8b86168", "s3_etag": "4ca19c1579242c5a8be5036e2159ced5-8" }, - { + "sequence_file/7cb5e572-fb2b-4416-8ff9-05af3bd1bcf4": { "name": "Adult3run2_S8_L002_R1_001.fastq.gz", "uuid": "fecea080-2c71-42f2-a2cd-3dbd89e04c80", "version": "2021-05-10T23:25:03.741000Z", @@ -4706,7 +4706,7 @@ "sha256": "0500e7808750a42701e80d3a3e4586b2255893a72efaae1482323af738b97915", "s3_etag": "3f6b5e52140c95a1043ef7bc0de81d39-28" }, - { + "sequence_file/bff57385-2f4f-4695-a153-412c9aabab59": { "name": "Young2_S44_L001_R2_001.fastq.gz", "uuid": "ffb352c5-f9e2-497c-940c-7cb5dd0eaa5e", "version": "2021-05-10T23:24:55.554000Z", @@ -4719,7 +4719,7 @@ "sha256": "44ff00362fb6473e08d57c17cbd74a894a694ab10cef45cb36300cc481ae20bd", "s3_etag": "2c00a99240b3e95beabeae164f463980-40" } - ], + }, "metadata": { "sequence_file/012af05a-4771-45e5-bb92-9b63fcbde822": { "describedBy": "https://schema.humancellatlas.org/type/file/9.3.0/sequence_file", diff --git a/test/indexer/data/0722b70c-6778-423d-8fe9-869e2a515d35.dss.hca.json b/test/indexer/data/0722b70c-6778-423d-8fe9-869e2a515d35.dss.hca.json index 14e5068a2..9aa2db7b4 100644 --- a/test/indexer/data/0722b70c-6778-423d-8fe9-869e2a515d35.dss.hca.json +++ b/test/indexer/data/0722b70c-6778-423d-8fe9-869e2a515d35.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/54647cbb-7814-4d9a-b7f8-a6605c2f7aa6": { + "name": "SRR7648414_2.fastq.gz", "uuid": "297d6cef-d2dd-4eaf-bcd7-5abd0b27d556", "version": "2021-03-18T11:38:48.652000Z", @@ -13,7 +14,7 @@ "sha256": "d0dfc258e12273a9572383196724ed4ad9c6c4481660bb056074e777cc08478d", "s3_etag": "67c8d6b1cd71a8e88b1299e24c98b4ce-174" }, - { + "sequence_file/95595c66-2121-4ebc-9f2e-b5b61d193f25": { "name": "SRR7648414_1.fastq.gz", "uuid": "2d392c72-e042-48f4-8d4c-02800e9303a5", "version": "2021-03-18T11:38:48.639000Z", @@ -26,7 +27,7 @@ "sha256": "84ac8921997a15ef8bb4721f6a135d660deb9b6f098a314d1d657fe667f3b8d5", "s3_etag": "0d8850e5eca0d74f0f683d0455e4cacd-68" } - ], + }, "metadata": { "dissociation_protocol/0a8112d1-d401-4c0d-8334-8cda8f8532c8": { "describedBy": "https://schema.humancellatlas.org/type/protocol/biomaterial_collection/6.2.0/dissociation_protocol", diff --git a/test/indexer/data/17a3d288-01a0-464a-9599-7375fda3353d.dss.hca.json b/test/indexer/data/17a3d288-01a0-464a-9599-7375fda3353d.dss.hca.json index 3268348f7..03364d448 100644 --- a/test/indexer/data/17a3d288-01a0-464a-9599-7375fda3353d.dss.hca.json +++ b/test/indexer/data/17a3d288-01a0-464a-9599-7375fda3353d.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/6bc5b7ef-68f8-445d-8460-f04180c4fae1": { "sha1": "3cf469fd27e6ded04b48e0e79d27c4125b036036", "name": "HCATisStabAug177078016_S3_L001_R1_001.fastq.gz", "uuid": "6bc5b7ef-68f8-445d-8460-f04180c4fae1", @@ -12,7 +12,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 785410326 }, - { + "sequence_file/cee5b925-919c-4c77-8ea2-be51a1728e2b": { "sha1": "5044125213cf33d39797ce440b21d146d3c2dc44", "name": "HCATisStabAug177078016_S2_L001_R1_001.fastq.gz", "uuid": "cee5b925-919c-4c77-8ea2-be51a1728e2b", @@ -24,7 +24,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1210026035 }, - { + "sequence_file/771d9bcb-a5ff-43b5-b3e8-e738cc4c05bf": { "sha1": "aef6f8c52aad47fbf643a93843794c7fb851aaac", "name": "HCATisStabAug177078016_S1_L001_R1_001.fastq.gz", "uuid": "771d9bcb-a5ff-43b5-b3e8-e738cc4c05bf", @@ -36,7 +36,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 984579175 }, - { + "sequence_file/17add91c-4063-4684-859d-d739baa4b9bb": { "sha1": "a74e90f75e7c48eeaa7fb2396ed88e1cfc278f4b", "name": "HCATisStabAug177078016_S3_L001_R2_001.fastq.gz", "uuid": "17add91c-4063-4684-859d-d739baa4b9bb", @@ -48,7 +48,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1796709528 }, - { + "sequence_file/024c5cb6-f473-40c9-9eb3-da08caf3180e": { "sha1": "016b573e4d0aff49147a13359e69b1c19e332817", "name": "HCATisStabAug177078016_S4_L001_R2_001.fastq.gz", "uuid": "024c5cb6-f473-40c9-9eb3-da08caf3180e", @@ -60,7 +60,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2448868668 }, - { + "sequence_file/b7554cb7-dc5a-4b07-9c7a-c04466d30576": { "sha1": "1e5f42bd8d9071c4ff788f4f68c9abb5624ba8ad", "name": "HCATisStabAug177078016_S4_L001_I1_001.fastq.gz", "uuid": "b7554cb7-dc5a-4b07-9c7a-c04466d30576", @@ -72,7 +72,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 544052716 }, - { + "sequence_file/fea5cc65-6d94-4d1e-a807-ec248f79b83d": { "sha1": "879fb66e2d808622de47c3f2183fdc190a0b20df", "name": "HCATisStabAug177078016_S2_L001_I1_001.fastq.gz", "uuid": "fea5cc65-6d94-4d1e-a807-ec248f79b83d", @@ -84,7 +84,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 574722449 }, - { + "sequence_file/b7d8d43c-bee6-48eb-bb36-0c07701c47b5": { "sha1": "d40ffdbde0c17493af376b47661cec2f55b24f21", "name": "HCATisStabAug177078016_S3_L001_I1_001.fastq.gz", "uuid": "b7d8d43c-bee6-48eb-bb36-0c07701c47b5", @@ -96,7 +96,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 359478571 }, - { + "sequence_file/5239e70b-7d8d-4285-971f-9a156441c2f2": { "sha1": "17fcbe4e89c4f68d8f7183de6dac0242919c7298", "name": "HCATisStabAug177078016_S4_L001_R1_001.fastq.gz", "uuid": "5239e70b-7d8d-4285-971f-9a156441c2f2", @@ -108,7 +108,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1112212351 }, - { + "sequence_file/c548066c-9994-415a-98cb-3df2933937ff": { "sha1": "8e00425311948375295dc0df6d356e1e26c3e874", "name": "HCATisStabAug177078016_S2_L001_R2_001.fastq.gz", "uuid": "c548066c-9994-415a-98cb-3df2933937ff", @@ -120,7 +120,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2734648788 }, - { + "sequence_file/8ebfd02e-2a74-4367-80db-48082f331625": { "sha1": "b4581e48612d503caeeb049c092e92739a905922", "name": "HCATisStabAug177078016_S1_L001_R2_001.fastq.gz", "uuid": "8ebfd02e-2a74-4367-80db-48082f331625", @@ -132,7 +132,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2188935776 }, - { + "sequence_file/49fddace-4c59-41c1-8930-0707460132d7": { "sha1": "831d9ba53201a83506b236af27e6c1fb06a384f2", "name": "HCATisStabAug177078016_S1_L001_I1_001.fastq.gz", "uuid": "49fddace-4c59-41c1-8930-0707460132d7", @@ -144,7 +144,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 470883073 } - ], + }, "metadata": { "project/6ec8e247-2eb0-42d1-823f-75facd03988d": { "content": { diff --git a/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.dss.hca.json b/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.dss.hca.json index 79a81af43..094ce59f4 100644 --- a/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.dss.hca.json +++ b/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/5f68ea73-350b-4d37-a341-3004139fb699": { + "name": "IDC9_L001_I1.fastq.gz", "uuid": "08bc2234-5157-4f5c-b348-5d63cc9f14e1", "version": "2019-09-24T09:35:07.310307Z", @@ -12,7 +13,7 @@ "sha256": "5a51c7ea8ce08cafb06d279041bd65f0759ab24bb6d2c25f2ca488d017cd2bc6", "s3_etag": "4cc2f68ce54b988081c14118adc480c4-7" }, - { + "sequence_file/23f8e139-f4fa-4476-ba59-ff5d37003c34": { "name": "IDC9_L001_R1.fastq.gz", "uuid": "c4288821-5775-4163-9543-5d29f847b03b", "version": "2019-09-24T09:35:07.508582Z", @@ -24,7 +25,7 @@ "sha256": "c2910761bfe2eb3ec958d653bc518988a8ecc081628a07d11f3308e25fb8f05d", "s3_etag": "046326b00d6cc7485eba093190ee7610-20" }, - { + "sequence_file/3c3d882a-cc38-4eea-ac53-0885f906852e": { "name": "IDC9_L001_R2.fastq.gz", "uuid": "1b9d4386-97ac-402d-a93d-40740b2c3c28", "version": "2019-09-24T09:35:07.677792Z", @@ -36,7 +37,7 @@ "sha256": "6d84bb5bcfec87db8480a01e0c65f44f7caf1af8668010cb825ef8114de130e7", "s3_etag": "06705170a39d451d000c0143135fc5c3-64" }, - { + "sequence_file/35e07477-76cb-4a92-99b6-7b3bbb02ec06": { "name": "IDC9_L002_I1.fastq.gz", "uuid": "ed7405bd-c1d0-4501-9a7a-7e953d887322", "version": "2019-09-24T09:35:07.845958Z", @@ -48,7 +49,7 @@ "sha256": "45ada227726e92de0638c50f4c2ac20ff3e2250f1138b436112d91d20fed19a3", "s3_etag": "4077676da51c8b6eff706b1ebf43114c-7" }, - { + "sequence_file/63051b9f-87d4-4853-a4a0-5cc742ef6e72": { "name": "IDC9_L002_R1.fastq.gz", "uuid": "292b2faf-0db3-4ba1-a6a5-cb7bdfa9313d", "version": "2019-09-24T09:35:08.157668Z", @@ -60,7 +61,7 @@ "sha256": "125e5c181744e2dacf0b156d4c0b82ce771701947b26ca738689edddfc3af97e", "s3_etag": "31985ad7f32b053fa97f05216c6e805e-20" }, - { + "sequence_file/6ca8e43f-5f40-4eb9-bfa9-294c54dbeade": { "name": "IDC9_L002_R2.fastq.gz", "uuid": "ea44789f-43b3-4684-b515-800605394177", "version": "2019-09-24T09:35:08.227847Z", @@ -72,7 +73,7 @@ "sha256": "e65d5d070584e7b08847fac0be1f89b7760ee9b301df792a66e5698d7d76d7f5", "s3_etag": "29da5762d5a55b9ecbd14c8663039f11-62" }, - { + "sequence_file/3dffc456-caaf-4823-9f65-fc0db7abacbc": { "name": "IDC9_L003_I1.fastq.gz", "uuid": "dd7d84d2-c515-489f-9ead-3f7df2c66848", "version": "2019-09-24T09:35:08.401689Z", @@ -84,7 +85,7 @@ "sha256": "17456db03c93cef439a31b1a43f3165db4f27a1dc93dbc76263beb5d002a0530", "s3_etag": "d7046367bee15cd004af8f9882874042-7" }, - { + "sequence_file/a2f4b05d-0dae-4655-acfd-ef3b91ae0ad0": { "name": "IDC9_L003_R1.fastq.gz", "uuid": "87fb0ccd-07d9-4dde-bbb0-c61338e3127b", "version": "2019-09-24T09:35:08.661156Z", @@ -96,7 +97,7 @@ "sha256": "55bd588c98a7caa2089271d79b6e0838ea8036726a7e56619786d4a23afa53c9", "s3_etag": "fc818501a59964e076aff1bc7f7068c6-20" }, - { + "sequence_file/98ee0901-d34c-48a5-915a-0511bac325ec": { "name": "IDC9_L003_R2.fastq.gz", "uuid": "c4613a58-8bfb-43c6-8901-35d579631859", "version": "2019-09-24T09:35:08.872601Z", @@ -108,7 +109,7 @@ "sha256": "3813e23040c8e6a26a43fd1f164b2ec1d118e8f52b9d4510640f990d8e969dd8", "s3_etag": "3188a7180ba75349ca223905e3f589c1-64" }, - { + "sequence_file/27fc1a2e-d70e-47ee-a4b7-92bf57e5b7a6": { "name": "IDC9_L004_I1.fastq.gz", "uuid": "f0011946-dbea-4f87-9858-5e3fd32a9829", "version": "2019-09-24T09:35:09.172703Z", @@ -120,7 +121,7 @@ "sha256": "8af97d885b995e7239a409f490e915f4754e7d1902f4a620f464995a422fb61f", "s3_etag": "20497e6cbc5f671fa94cf69bf0febdad-7" }, - { + "sequence_file/133f2a25-f3aa-49a7-b9b6-d185d302fb26": { "name": "IDC9_L004_R1.fastq.gz", "uuid": "1abc51fb-6b3a-45e9-8691-fc250b4e0509", "version": "2019-09-24T09:35:09.245235Z", @@ -132,7 +133,7 @@ "sha256": "439112aa9aebd86f7e6a0c2206e005c8824994105aad3844090d765397931ed2", "s3_etag": "c9c70827a7c5d23bb150105a14112af9-20" }, - { + "sequence_file/e46af70a-0396-41db-9b74-330cb8244124": { "name": "IDC9_L004_R2.fastq.gz", "uuid": "ae5d1035-8f2b-4355-a0ef-bbb99958b303", "version": "2019-09-24T09:35:09.407370Z", @@ -144,7 +145,7 @@ "sha256": "4c9b22cfd3eb141a30a43fd52ce576b586279ca021444ff191c460a26cf1e4cc", "s3_etag": "c92e5374ac0a53b228d4c1511c2d2842-63" } - ], + }, "metadata": { "cell_suspension/906f8f09-deaa-40bb-bf50-27d2336b2dc4": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.3.0/cell_suspension", diff --git a/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.tdr.hca.json b/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.tdr.hca.json index ae3e2bea6..9dd46a048 100644 --- a/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.tdr.hca.json +++ b/test/indexer/data/1b6d8348-d6e9-406a-aa6a-7ee886e52bf9.tdr.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "supplementary_file/22561f93-d5e0-57eb-a54e-2d9d565cc234": { "name": "22561f93-d5e0-57eb-a54e-2d9d565cc234_file_name.fmt", "uuid": "046a88ef-d19f-51ed-9003-14847dffc820", "size": 1024, @@ -11,7 +11,7 @@ "sha256": "", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_1d239f78-f3e6-5dfb-aeb0-f50d8d97b51c" }, - { + "sequence_file/5f68ea73-350b-4d37-a341-3004139fb699": { "name": "IDC9_L001_I1.fastq.gz", "uuid": "08bc2234-5157-4f5c-b348-5d63cc9f14e1", "version": "2019-09-24T09:35:07.310307Z", @@ -24,7 +24,7 @@ "s3_etag": "4cc2f68ce54b988081c14118adc480c4-7", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_c82292d3-61d1-5785-b8dc-24b9365df5bd" }, - { + "supplementary_file/c343a47d-683f-571d-99c4-1331841b4e63": { "name": "c343a47d-683f-571d-99c4-1331841b4e63_file_name.fmt", "uuid": "19617367-cda8-54e0-8296-84623ef58c3f", "size": 1024, @@ -35,7 +35,7 @@ "sha256": "", "drs_uri": null }, - { + "sequence_file/133f2a25-f3aa-49a7-b9b6-d185d302fb26": { "name": "IDC9_L004_R1.fastq.gz", "uuid": "1abc51fb-6b3a-45e9-8691-fc250b4e0509", "version": "2019-09-24T09:35:09.245235Z", @@ -48,7 +48,7 @@ "s3_etag": "c9c70827a7c5d23bb150105a14112af9-20", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_385feda5-d1e3-5a51-8e55-f4f491a4e7bf" }, - { + "sequence_file/3c3d882a-cc38-4eea-ac53-0885f906852e": { "name": "IDC9_L001_R2.fastq.gz", "uuid": "1b9d4386-97ac-402d-a93d-40740b2c3c28", "version": "2019-09-24T09:35:07.677792Z", @@ -61,7 +61,7 @@ "s3_etag": "06705170a39d451d000c0143135fc5c3-64", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_83e89c54-4fc6-58b0-800c-3788539c41e7" }, - { + "sequence_file/63051b9f-87d4-4853-a4a0-5cc742ef6e72": { "name": "IDC9_L002_R1.fastq.gz", "uuid": "292b2faf-0db3-4ba1-a6a5-cb7bdfa9313d", "version": "2019-09-24T09:35:08.157668Z", @@ -74,7 +74,7 @@ "s3_etag": "31985ad7f32b053fa97f05216c6e805e-20", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_dba31e1c-1b9c-56ae-af74-16b00b8144d2" }, - { + "supplementary_file/507d2814-1688-54e7-b73e-2f831aa34368": { "name": "507d2814-1688-54e7-b73e-2f831aa34368_file_name.fmt", "uuid": "519ee493-0984-5b54-95ec-85452d506b00", "size": 1024, @@ -85,7 +85,7 @@ "sha256": "", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_9d6f268f-f484-5381-9095-f0998fa0c961" }, - { + "sequence_file/a2f4b05d-0dae-4655-acfd-ef3b91ae0ad0": { "name": "IDC9_L003_R1.fastq.gz", "uuid": "87fb0ccd-07d9-4dde-bbb0-c61338e3127b", "version": "2019-09-24T09:35:08.661156Z", @@ -98,7 +98,7 @@ "s3_etag": "fc818501a59964e076aff1bc7f7068c6-20", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_a5e4e698-1d4c-5a5d-8d7c-5c84ea0f30d8" }, - { + "sequence_file/e46af70a-0396-41db-9b74-330cb8244124": { "name": "IDC9_L004_R2.fastq.gz", "uuid": "ae5d1035-8f2b-4355-a0ef-bbb99958b303", "version": "2019-09-24T09:35:09.407370Z", @@ -111,7 +111,7 @@ "s3_etag": "c92e5374ac0a53b228d4c1511c2d2842-63", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_065dad63-3e05-5738-8ba5-9925d5d73d5e" }, - { + "sequence_file/23f8e139-f4fa-4476-ba59-ff5d37003c34": { "name": "IDC9_L001_R1.fastq.gz", "uuid": "c4288821-5775-4163-9543-5d29f847b03b", "version": "2019-09-24T09:35:07.508582Z", @@ -124,7 +124,7 @@ "s3_etag": "046326b00d6cc7485eba093190ee7610-20", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_93ce1f3e-a963-5463-948f-44751a37f48d" }, - { + "sequence_file/98ee0901-d34c-48a5-915a-0511bac325ec": { "name": "IDC9_L003_R2.fastq.gz", "uuid": "c4613a58-8bfb-43c6-8901-35d579631859", "version": "2019-09-24T09:35:08.872601Z", @@ -137,7 +137,7 @@ "s3_etag": "3188a7180ba75349ca223905e3f589c1-64", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_e6c1d2ce-d6ad-500e-8682-626a555992ab" }, - { + "sequence_file/3dffc456-caaf-4823-9f65-fc0db7abacbc": { "name": "IDC9_L003_I1.fastq.gz", "uuid": "dd7d84d2-c515-489f-9ead-3f7df2c66848", "version": "2019-09-24T09:35:08.401689Z", @@ -150,7 +150,7 @@ "s3_etag": "d7046367bee15cd004af8f9882874042-7", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_bb455f5a-a70f-5155-85a0-46f475856e9f" }, - { + "sequence_file/6ca8e43f-5f40-4eb9-bfa9-294c54dbeade": { "name": "IDC9_L002_R2.fastq.gz", "uuid": "ea44789f-43b3-4684-b515-800605394177", "version": "2019-09-24T09:35:08.227847Z", @@ -163,7 +163,7 @@ "s3_etag": "29da5762d5a55b9ecbd14c8663039f11-62", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_f140bd59-16c2-5082-aaf6-1c929e7063c6" }, - { + "sequence_file/35e07477-76cb-4a92-99b6-7b3bbb02ec06": { "name": "IDC9_L002_I1.fastq.gz", "uuid": "ed7405bd-c1d0-4501-9a7a-7e953d887322", "version": "2019-09-24T09:35:07.845958Z", @@ -176,7 +176,7 @@ "s3_etag": "4077676da51c8b6eff706b1ebf43114c-7", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_b644bacb-5e69-5f73-baaf-f32178b0d0fd" }, - { + "sequence_file/27fc1a2e-d70e-47ee-a4b7-92bf57e5b7a6": { "name": "IDC9_L004_I1.fastq.gz", "uuid": "f0011946-dbea-4f87-9858-5e3fd32a9829", "version": "2019-09-24T09:35:09.172703Z", @@ -189,7 +189,7 @@ "s3_etag": "20497e6cbc5f671fa94cf69bf0febdad-7", "drs_uri": "drs://mock_tdr.lan/v1_d8c20944-739f-4e7d-9161-b720953432ce_a694f8a4-424d-56db-9329-d449667416ea" } - ], + }, "metadata": { "cell_suspension/906f8f09-deaa-40bb-bf50-27d2336b2dc4": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.3.0/cell_suspension", diff --git a/test/indexer/data/1ed68210-eaba-531d-ba9e-db80164d65ef.dss.hca.json b/test/indexer/data/1ed68210-eaba-531d-ba9e-db80164d65ef.dss.hca.json index d029c477e..3465220f8 100644 --- a/test/indexer/data/1ed68210-eaba-531d-ba9e-db80164d65ef.dss.hca.json +++ b/test/indexer/data/1ed68210-eaba-531d-ba9e-db80164d65ef.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/8da4bdb9-ab64-5a90-8bce-f0ed5106ea41": { "content-type": "application/gzip; dcp-type=data", "crc32c": "9d9e936d", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "c88f5811-6b23-5f9c-951f-29b4a80e6b4b", "version": "2021-01-01T00:00:00.000000Z" }, - { + "sequence_file/de17aa7d-be28-53c1-b7a3-1f4b3989e3e6": { "content-type": "application/gzip; dcp-type=data", "crc32c": "e30fa683", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "14c05ce3-f946-5936-893c-ee0ddd7407fb", "version": "2021-01-01T00:00:00.000000Z" } - ], + }, "metadata": { "project/90bf705c-d891-5ce2-aa54-094488b445c6": { "array_express_accessions": [ diff --git a/test/indexer/data/1f6afb64-fa14-5c6f-a474-a742540108a3.dss.hca.json b/test/indexer/data/1f6afb64-fa14-5c6f-a474-a742540108a3.dss.hca.json index d9db1bd1b..4ef571c91 100644 --- a/test/indexer/data/1f6afb64-fa14-5c6f-a474-a742540108a3.dss.hca.json +++ b/test/indexer/data/1f6afb64-fa14-5c6f-a474-a742540108a3.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/2645ed0a-a291-5fe2-a262-7b796b05d647": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "3c9d7a23", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "b706259c-7429-5f2f-8142-2b8e9a48db1f", "version": "2021-01-01T00:00:00.000000Z" } - ], + }, "metadata": { "project/90bf705c-d891-5ce2-aa54-094488b445c6": { "array_express_accessions": [ diff --git a/test/indexer/data/1fd499c5-f397-4bff-9af0-eb42c37d5fbe.dss.hca.json b/test/indexer/data/1fd499c5-f397-4bff-9af0-eb42c37d5fbe.dss.hca.json index a37ae2591..264584536 100644 --- a/test/indexer/data/1fd499c5-f397-4bff-9af0-eb42c37d5fbe.dss.hca.json +++ b/test/indexer/data/1fd499c5-f397-4bff-9af0-eb42c37d5fbe.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/0d352174-7bf3-44b3-9b7b-7ef3056ed085": { + "name": "SRR7648416_2.fastq.gz", "uuid": "2761715a-8de8-4d66-8286-90d89436a83d", "version": "2021-03-18T11:38:48.691000Z", @@ -13,7 +14,7 @@ "sha256": "a5a2f1f0c3353ae1d871c97f0d5d5e57f045d947a8d4ca02faff64a47a370745", "s3_etag": "07aaf23698191a8a3163999a86fb849a-239" }, - { + "sequence_file/853dbcbd-8aaf-479d-8e57-134e11c61b72": { "name": "SRR7648416_1.fastq.gz", "uuid": "c3b97a11-bba4-42e7-bfee-7dcfd8249462", "version": "2021-03-18T11:38:48.705000Z", @@ -26,7 +27,7 @@ "sha256": "97b855bb74b7371bf3975e5a29185375eda7bd5468bd18c659fd0ccfc963ed25", "s3_etag": "fd8819217ffaee274a2156820276b229-84" } - ], + }, "metadata": { "process/04446f99-f9ed-4a4a-82ec-203ed468cbc0": { "process_core": { diff --git a/test/indexer/data/2a87dc5c-0c3c-4d91-a348-5d784ab48b92.dss.hca.json b/test/indexer/data/2a87dc5c-0c3c-4d91-a348-5d784ab48b92.dss.hca.json index a2ea38f31..c18771c9a 100644 --- a/test/indexer/data/2a87dc5c-0c3c-4d91-a348-5d784ab48b92.dss.hca.json +++ b/test/indexer/data/2a87dc5c-0c3c-4d91-a348-5d784ab48b92.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/ff7e8e48-a9ae-4fab-86b6-b895388abf6e": { "sha1": "b9b2e6bb31afbf37ef7f974d3219fcfd0d3cb79e", "name": "MantonBM2_HiSeq_3_S11_L006_R2_001.fastq.gz", "uuid": "ff7e8e48-a9ae-4fab-86b6-b895388abf6e", @@ -12,7 +12,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3360859753 }, - { + "sequence_file/175d7210-8296-4789-bd4f-e0ddd35c2a89": { "sha1": "5df5ba5656f0b48159c8495a1c619ac10bca2c18", "name": "MantonBM1_HiSeq_5_S5_L008_R1_001.fastq.gz", "uuid": "175d7210-8296-4789-bd4f-e0ddd35c2a89", @@ -24,7 +24,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1216970447 }, - { + "sequence_file/452b88e0-94cf-4243-b44e-94b16c936896": { "sha1": "b0d7006c3ad8801edbc0083ab5c735a73fe52532", "name": "MantonBM4_HiSeq_1_S25_L002_R1_001.fastq.gz", "uuid": "452b88e0-94cf-4243-b44e-94b16c936896", @@ -36,7 +36,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1283631104 }, - { + "sequence_file/0bf66ea5-3dee-422b-b8f0-837033556d99": { "sha1": "f88d2f16a2579945c980690147806bf4f5b5d037", "name": "MantonBM4_HiSeq_8_S32_L001_I1_001.fastq.gz", "uuid": "0bf66ea5-3dee-422b-b8f0-837033556d99", @@ -48,7 +48,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 433802077 }, - { + "sequence_file/94e3471e-744b-44cc-b987-31071a107fef": { "sha1": "2eb4c033645f2ecd4f0ca865ba8fe6d8e11f8fb5", "name": "MantonBM3_HiSeq_4_S20_L003_R2_001.fastq.gz", "uuid": "94e3471e-744b-44cc-b987-31071a107fef", @@ -60,7 +60,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 4341790603 }, - { + "sequence_file/40cef712-132a-48c4-9ddd-21169ea24903": { "sha1": "86399860a7752c3537ea66472f87d7616159b309", "name": "MantonBM3_HiSeq_1_S17_L003_R1_001.fastq.gz", "uuid": "40cef712-132a-48c4-9ddd-21169ea24903", @@ -72,7 +72,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1178084808 }, - { + "sequence_file/d5294332-19b5-4ff1-b298-6c1cf500cb35": { "sha1": "6135143401dca0ac572d181087899414f8361edd", "name": "MantonBM1_HiSeq_1_S1_L007_I1_001.fastq.gz", "uuid": "d5294332-19b5-4ff1-b298-6c1cf500cb35", @@ -84,7 +84,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 362022725 }, - { + "sequence_file/5bb3fb23-884b-4762-8033-481f3dc67746": { "sha1": "4b8d3be4098c6402ebd9053658dfa47b2dabf942", "name": "MantonBM3_HiSeq_4_S20_L004_R1_001.fastq.gz", "uuid": "5bb3fb23-884b-4762-8033-481f3dc67746", @@ -96,7 +96,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1414727535 }, - { + "sequence_file/cf6e3ba9-a5d7-4225-abbb-04f761a47c82": { "sha1": "773829ff844854ad1097629f48b4f3da8feec32d", "name": "MantonBM3_HiSeq_1_S17_L003_I1_001.fastq.gz", "uuid": "cf6e3ba9-a5d7-4225-abbb-04f761a47c82", @@ -108,7 +108,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 395216892 }, - { + "sequence_file/b55fd000-cd16-4976-b264-8df9e012df4e": { "sha1": "7efecac7a75143f3e4e2c3c3b9848712f2515376", "name": "MantonBM4_HiSeq_4_S28_L002_I1_001.fastq.gz", "uuid": "b55fd000-cd16-4976-b264-8df9e012df4e", @@ -120,7 +120,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 387192102 }, - { + "sequence_file/0ef80820-3d78-4810-a009-3134cb9090b6": { "sha1": "d403186ec97a88906c3e30b4f6916e07957cfe86", "name": "MantonBM1_HiSeq_4_S4_L007_R2_001.fastq.gz", "uuid": "0ef80820-3d78-4810-a009-3134cb9090b6", @@ -132,7 +132,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3497745120 }, - { + "sequence_file/51e6d934-8a34-4204-96b9-e6a0865f2cac": { "sha1": "88f48be8df0198ddf6ae13ff8834b907e70039d9", "name": "MantonBM2_HiSeq_8_S16_L005_I1_001.fastq.gz", "uuid": "51e6d934-8a34-4204-96b9-e6a0865f2cac", @@ -144,7 +144,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 389104695 }, - { + "sequence_file/463a120d-ee95-476c-8329-c633b43ab1aa": { "sha1": "6d2f1682605aa7d48d0145ec97e2ac66f0194277", "name": "MantonBM4_HiSeq_3_S27_L001_I1_001.fastq.gz", "uuid": "463a120d-ee95-476c-8329-c633b43ab1aa", @@ -156,7 +156,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 378955078 }, - { + "sequence_file/f97c6247-15c6-403e-9a15-62113f9dc24a": { "sha1": "f16e2fbdf6d126a17d12ddc37af5a34e957f833c", "name": "MantonBM4_HiSeq_2_S26_L002_I1_001.fastq.gz", "uuid": "f97c6247-15c6-403e-9a15-62113f9dc24a", @@ -168,7 +168,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 365584676 }, - { + "sequence_file/6ff26361-3be0-48c4-a5dd-c215ba8021bc": { "sha1": "fea1c97c6d07fae84daf09f8948981a9ffcca90c", "name": "MantonBM3_HiSeq_3_S19_L003_R1_001.fastq.gz", "uuid": "6ff26361-3be0-48c4-a5dd-c215ba8021bc", @@ -180,7 +180,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1178712263 }, - { + "sequence_file/98f19741-b0fe-4aff-ab8c-9a77af8e36ce": { "sha1": "241f0902090701c8c4c5ce1f3d119b690d26ee3d", "name": "MantonBM4_HiSeq_3_S27_L001_R1_001.fastq.gz", "uuid": "98f19741-b0fe-4aff-ab8c-9a77af8e36ce", @@ -192,7 +192,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1175136992 }, - { + "sequence_file/522747b7-1e9b-435e-9a4a-1a4b390fd153": { "sha1": "88e41ca6a866c4585c4abbdc6430acd5a51442d4", "name": "MantonBM3_HiSeq_5_S21_L003_R2_001.fastq.gz", "uuid": "522747b7-1e9b-435e-9a4a-1a4b390fd153", @@ -204,7 +204,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3385891615 }, - { + "sequence_file/85a94a58-241b-4c97-a85f-8d718c8c4679": { "sha1": "cc8b337c8d038b40f68e2ed9a3d42e65c3914c58", "name": "MantonBM1_HiSeq_8_S8_L008_R1_001.fastq.gz", "uuid": "85a94a58-241b-4c97-a85f-8d718c8c4679", @@ -216,7 +216,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1246904340 }, - { + "sequence_file/838bef81-e228-4470-b50b-5259d7cbe5db": { "sha1": "315ba5eaa5b9e2cff1bcb7e575c24d9b61162515", "name": "MantonBM1_HiSeq_8_S8_L008_I1_001.fastq.gz", "uuid": "838bef81-e228-4470-b50b-5259d7cbe5db", @@ -228,7 +228,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 410748360 }, - { + "sequence_file/ffa34fcb-1a7d-45cd-95be-c29cd95e73da": { "sha1": "4870b92ef6350ea73e0fb671e2dc9eb57a8fedd1", "name": "MantonBM4_HiSeq_7_S31_L001_R1_001.fastq.gz", "uuid": "ffa34fcb-1a7d-45cd-95be-c29cd95e73da", @@ -240,7 +240,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1173842335 }, - { + "sequence_file/abfc93d7-2406-4c83-8e50-ae23746b5724": { "sha1": "77ebb4a864b97baa54b9a61d356d001cf3f04992", "name": "MantonBM2_HiSeq_2_S10_L005_I1_001.fastq.gz", "uuid": "abfc93d7-2406-4c83-8e50-ae23746b5724", @@ -252,7 +252,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 414104360 }, - { + "sequence_file/991d0b52-a02e-4705-9754-4af10cbba1d9": { "sha1": "a64f4caacb97bbcfbd0c659721e78250d467cfaa", "name": "MantonBM3_HiSeq_5_S21_L004_R2_001.fastq.gz", "uuid": "991d0b52-a02e-4705-9754-4af10cbba1d9", @@ -264,7 +264,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3205746825 }, - { + "sequence_file/919ae226-445e-49a5-9e3d-69b9a1932e96": { "sha1": "15f99df7fff5e2658bab16fdf79de2facca87280", "name": "MantonBM1_HiSeq_7_S7_L007_I1_001.fastq.gz", "uuid": "919ae226-445e-49a5-9e3d-69b9a1932e96", @@ -276,7 +276,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 436019611 }, - { + "sequence_file/59adfc03-cca3-496d-91f8-262512429977": { "sha1": "711da2145ec1a2da73f8d1c9efc4d9bf0737d13c", "name": "MantonBM3_HiSeq_8_S24_L003_I1_001.fastq.gz", "uuid": "59adfc03-cca3-496d-91f8-262512429977", @@ -288,7 +288,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 378329589 }, - 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{ + "sequence_file/ba55717c-bc2d-4ae6-aab0-40cd0c39e132": { "sha1": "78fdd3e12b972477a1791691242f138f8cc38e0f", "name": "MantonBM2_HiSeq_1_S9_L005_R1_001.fastq.gz", "uuid": "ba55717c-bc2d-4ae6-aab0-40cd0c39e132", @@ -348,7 +348,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1099578481 }, - { + "sequence_file/e4e868a9-a1e7-4963-875c-fe48530460f3": { "sha1": "d7d7c846b1b108007bee9d06e779a82f7fe79f44", "name": "MantonBM3_HiSeq_8_S24_L003_R2_001.fastq.gz", "uuid": "e4e868a9-a1e7-4963-875c-fe48530460f3", @@ -360,7 +360,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3357951845 }, - { + "sequence_file/9ee2ade2-48f5-4319-99aa-eb2c73aa2e83": { "sha1": "a192a57c9885649e9e402b778aa85988a619072e", "name": "MantonBM2_HiSeq_4_S12_L005_R1_001.fastq.gz", "uuid": "9ee2ade2-48f5-4319-99aa-eb2c73aa2e83", @@ -372,7 +372,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1167392254 }, - { + "sequence_file/40c497af-80ea-4c54-a628-a57486c0f8ec": { "sha1": "6fb7f15c71d337d1623a1db0dc35b0f5c100c0ea", "name": "MantonBM4_HiSeq_1_S25_L001_I1_001.fastq.gz", "uuid": "40c497af-80ea-4c54-a628-a57486c0f8ec", @@ -384,7 +384,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 442412775 }, - 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{ + "sequence_file/08da0161-f96f-4da0-9c47-421bc0ebf7b8": { "sha1": "3bc8aa04f7d1b5cbc2cb92246071281cf35bb216", "name": "MantonBM2_HiSeq_6_S14_L005_R1_001.fastq.gz", "uuid": "08da0161-f96f-4da0-9c47-421bc0ebf7b8", @@ -2220,7 +2220,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1277422495 }, - { + "sequence_file/5b802cb7-74ea-40da-9629-89da2f879940": { "sha1": "39237493200061fe5a29293279207b6521987398", "name": "MantonBM2_HiSeq_1_S9_L005_R2_001.fastq.gz", "uuid": "5b802cb7-74ea-40da-9629-89da2f879940", @@ -2232,7 +2232,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3268334757 }, - { + "sequence_file/67e5a10c-0f5b-48af-aa30-628854a0928d": { "sha1": "80692c6ccc3b635a5ffa04a064c832ecb1a162e6", "name": "MantonBM2_HiSeq_7_S15_L005_R2_001.fastq.gz", "uuid": "67e5a10c-0f5b-48af-aa30-628854a0928d", @@ -2244,7 +2244,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 4287329158 }, - { + "sequence_file/9478fc7f-df90-4067-b8ad-a480706b9ade": { "sha1": "87eab986661f49e0a388064c559504a55502b285", "name": "MantonBM1_HiSeq_7_S7_L008_R1_001.fastq.gz", "uuid": "9478fc7f-df90-4067-b8ad-a480706b9ade", @@ -2256,7 +2256,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1256242824 }, - { + "sequence_file/a64e2f58-8fbc-4382-9ca9-845f32a7133f": { "sha1": "30522ba281fc3d3d507a0d076b9e4bb0c46bcbcf", "name": "MantonBM4_HiSeq_8_S32_L002_R1_001.fastq.gz", "uuid": "a64e2f58-8fbc-4382-9ca9-845f32a7133f", @@ -2268,7 +2268,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1289963979 }, - { + "sequence_file/fe25d73e-ecb7-4228-bfa5-b87ea5f1eb91": { "sha1": "54a08f501dc6a3324f4ebfebfa3392f77c01fdb1", "name": "MantonBM4_HiSeq_7_S31_L002_R2_001.fastq.gz", "uuid": "fe25d73e-ecb7-4228-bfa5-b87ea5f1eb91", @@ -2280,7 +2280,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3314894864 }, - { + "sequence_file/6001f9be-8ebd-4dd3-86ff-92e93adad0d7": { "sha1": "fd1a5e5656c3e0c3f758a953eedfd9d9d4c25aee", "name": "MantonBM1_HiSeq_4_S4_L008_R2_001.fastq.gz", "uuid": "6001f9be-8ebd-4dd3-86ff-92e93adad0d7", @@ -2292,7 +2292,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3313293376 }, - { + "sequence_file/da06f1b2-bd05-4300-8899-d0146c5ecf83": { "sha1": "4afe1f98b060a1b0fcd750ed2185421687c32c7b", "name": "MantonBM2_HiSeq_7_S15_L006_R2_001.fastq.gz", "uuid": "da06f1b2-bd05-4300-8899-d0146c5ecf83", @@ -2304,7 +2304,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 4046985243 } - ], + }, "metadata": { "project/6504d48c-1610-43aa-8cf8-214a960e110c": { "content": { diff --git a/test/indexer/data/2c7d06b8-658e-4c51-9de4-a768322f84c5.dss.hca.json b/test/indexer/data/2c7d06b8-658e-4c51-9de4-a768322f84c5.dss.hca.json index 1bdfee488..69e1f1427 100644 --- a/test/indexer/data/2c7d06b8-658e-4c51-9de4-a768322f84c5.dss.hca.json +++ b/test/indexer/data/2c7d06b8-658e-4c51-9de4-a768322f84c5.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/30038dc4-4de3-4fdb-abd3-a50ea36cb225": { + "name": "GSM5177044_PD170_matrix.mtx.gz", "uuid": "f524cda6-8e08-4bf4-9fec-536107bca35a", "version": "2021-09-21T17:27:13.154000Z", @@ -13,7 +14,7 @@ "sha256": "6e13614e05e829d12a73df4d26f190a68ca2aa3579234c7e254ac21b290305f4", "s3_etag": "d742c32bd01d51e075e3d70e189f315a" } - ], + }, "metadata": { "sequencing_protocol/c2f2fee0-c8dc-4511-9e4a-3db4ab6b2dce": { "describedBy": "https://schema.humancellatlas.org/type/protocol/sequencing/10.1.0/sequencing_protocol", diff --git a/test/indexer/data/3ac62c33-93e1-56b4-b857-59497f5d942d.dss.hca.json b/test/indexer/data/3ac62c33-93e1-56b4-b857-59497f5d942d.dss.hca.json index 261e65119..a1a4fece1 100644 --- a/test/indexer/data/3ac62c33-93e1-56b4-b857-59497f5d942d.dss.hca.json +++ b/test/indexer/data/3ac62c33-93e1-56b4-b857-59497f5d942d.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "image_file/b29a331e-2d7b-507f-8e47-d6151bfeeb21": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "3c9d7a23", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "f478eb29-dd24-5e66-ad65-37419a2b2a10", "version": "2021-01-01T00:00:00.000000Z" } - ], + }, "metadata": { "project/90bf705c-d891-5ce2-aa54-094488b445c6": { "array_express_accessions": [ diff --git a/test/indexer/data/3db604da-940e-49b1-9bcc-25699a55b295.dss.hca.json b/test/indexer/data/3db604da-940e-49b1-9bcc-25699a55b295.dss.hca.json index 79c54d5e9..9d3d58622 100644 --- a/test/indexer/data/3db604da-940e-49b1-9bcc-25699a55b295.dss.hca.json +++ b/test/indexer/data/3db604da-940e-49b1-9bcc-25699a55b295.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/2e072336-b906-4c9b-a475-ca03f51c8452": { + "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "ce4f092f", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "ad2c5318-622f-460c-87b2-56409bd1e3c5", "version": "2018-11-02T18:40:10.799791Z" }, - { + "analysis_file/2f7c43a5-30e5-443b-951b-b2b5d32bea06": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "e53b2e50-be34-4c63-888f-2b71c12f01f9", "version": "2018-11-02T18:40:11.000085Z" }, - { + "analysis_file/052ee573-ff99-41b8-ad19-eea77a9cce7f": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "62f19998", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "2d8a1cf2-be42-4973-bce0-9d4fc2c76d5e", "version": "2018-11-02T18:40:11.266854Z" }, - { + "analysis_file/d2cc22c0-6281-4f31-9ca1-b6ab6f27d2b1": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "e9fca42f", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "eedb5bdd-ebe4-4c89-8b53-edfcafc32f23", "version": "2018-11-02T18:40:11.459826Z" }, - { + "analysis_file/69559434-0da7-4bdd-a8f4-8be55cdcf45e": { "content-type": "text/csv; dcp-type=data", "crc32c": "d2b3ada1", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "d430490a-35aa-498f-a5f3-19613a2a464c", "version": "2018-11-02T18:40:11.948974Z" }, - { + "analysis_file/a1007d9b-6636-4909-9918-4aa85f99e9e7": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "2447af7d", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "fb1e7b89-8c5b-4141-b574-afe59ce86208", "version": "2018-11-02T18:40:12.199330Z" }, - { + "analysis_file/265c105c-803e-4468-a67d-8ba10011fcf1": { "content-type": "application/gzip; dcp-type=data", "crc32c": "3e6120c7", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "692ccec3-2a60-4be9-aa2b-e09d15db1162", "version": "2018-11-02T18:40:12.584705Z" }, - { + "analysis_file/eb4073be-f278-47f3-9f41-8a6e7284b49d": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "6dfbc945", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "eac33ee2-6e00-4ca9-82a5-731514904708", "version": "2018-11-02T18:40:12.784937Z" }, - { + "analysis_file/487ccf21-6270-4880-b93d-6c80a7e03ca3": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "922282c3", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "e7feb139-89a3-4df0-b55c-3a55ea9b64de", "version": "2018-11-02T18:40:13.146629Z" }, - { + "analysis_file/2046e0bc-be29-4933-8f1a-094aa2bf3172": { "content-type": "text/html; dcp-type=data", "crc32c": "38b8d336", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "e7f1fd99-0fa8-485f-93fc-a20363e78862", "version": "2018-11-02T18:40:13.548803Z" }, - { + "analysis_file/f3049150-14c7-4dae-a76c-3a1af9e951a1": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7c54ea3d", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "d836afba-f88f-4892-9ab7-b3bc2b6b274f", "version": "2018-11-02T18:40:14.848102Z" }, - { + "analysis_file/79dc63a1-8114-495f-80cb-b0c0003d1f5b": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "ee93b4c0-ef0c-4a93-af64-39b55479a947", "version": "2018-11-02T18:40:15.020102Z" }, - { + "analysis_file/2097f789-3a94-44f0-adc0-b3e76233b5dc": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "275878e7", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "02e0416b-3bee-44f7-a85d-590a10f5ad03", "version": "2018-11-02T18:40:15.177006Z" }, - { + "sequence_file/6f725a94-5c81-45e5-8d16-96520aa99703": { "content-type": "application/gzip; dcp-type=data", "crc32c": "0dd4606e", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "41ceb219-bc6f-44fc-a5e7-e078dbeb3885", "version": "2018-11-02T17:42:16.609368Z" }, - { + "sequence_file/2db43e94-5208-405e-bc2a-ffade59b94c0": { "content-type": "application/gzip; dcp-type=data", "crc32c": "3106c234", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "7033153b-f522-4fca-9c48-7cbdeaf0ef36", "version": "2018-11-02T17:42:16.882358Z" }, - { + "sequence_file/62d33b9a-d413-45d0-b8c7-c3135922b4b1": { "content-type": "application/gzip; dcp-type=data", "crc32c": "edc27e7c", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "b867ddee-c11d-4c61-9bd6-dbe60378303f", "version": "2018-11-02T17:42:17.032860Z" } - ], + }, "metadata": { "cell_suspension/74bc8f6d-ce89-4128-bb4e-f0d527e84e83": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/3f8176ff-61a7-4504-a57c-fc70f38d5b13.dss.hca.json b/test/indexer/data/3f8176ff-61a7-4504-a57c-fc70f38d5b13.dss.hca.json index 6cab99cd5..aafd04031 100644 --- a/test/indexer/data/3f8176ff-61a7-4504-a57c-fc70f38d5b13.dss.hca.json +++ b/test/indexer/data/3f8176ff-61a7-4504-a57c-fc70f38d5b13.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/3404deaa-6274-4b78-99ae-442dd401714c": { + "content-type": "text/plain; dcp-type=data", "crc32c": "7fea1984", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "2fe3ebac-9fc0-43e0-a074-53ec9c85a1c6", "version": "2018-10-24T23:43:46.208710Z" }, - { + "analysis_file/884d5482-3432-4259-b551-955ba35becc2": { "content-type": "text/plain; dcp-type=data", "crc32c": "062bc010", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "0462b8db-4623-48ff-bcfc-7ad963407262", "version": "2018-10-24T23:43:46.657440Z" }, - { + "analysis_file/77d3b337-d169-44a5-9b6a-be1c6d1b31b7": { "content-type": "text/plain; dcp-type=data", "crc32c": "8111810d", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "a9c9e43c-30a5-40f4-98c0-85af056e0be0", "version": "2018-10-24T23:43:46.917923Z" }, - { + "analysis_file/b115459d-d690-418c-a608-48ede1cc5a43": { "content-type": "text/plain; dcp-type=data", "crc32c": "88dab227", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "ad24bc8f-8e57-42d2-8395-4d3dcdc5e317", "version": "2018-10-24T23:43:47.714898Z" }, - { + "analysis_file/05ea34ca-995b-4c30-9f87-81ad07e61305": { "content-type": "text/plain; dcp-type=data", "crc32c": "cea14b5c", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "5619210b-c8ac-4607-a2ce-493e781945c3", "version": "2018-10-24T23:43:48.004861Z" }, - { + "analysis_file/03e676dd-1718-40e0-a246-f3c6a594e334": { "content-type": "text/csv; dcp-type=data", "crc32c": "bfa0a411", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "e0039f22-89b6-455b-988f-cb0ce8777315", "version": "2018-10-24T23:43:48.309842Z" }, - { + "analysis_file/19fee968-3d70-43a1-a64a-a778d656bd2e": { "content-type": "text/csv; dcp-type=data", "crc32c": "133298b0", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "b6f0ab9a-1c3a-4256-93bb-3eaee3ce8789", "version": "2018-10-24T23:43:48.570816Z" }, - { + "analysis_file/edd03152-3219-41cd-9129-62f2e8944e91": { "content-type": "text/csv; dcp-type=data", "crc32c": "11810dd2", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "e9bdf224-232e-4285-8521-18febe6031fa", "version": "2018-10-24T23:43:48.840471Z" }, - { + "analysis_file/e8972873-6e54-40d8-85ca-790a8d5688d0": { "content-type": "text/csv; dcp-type=data", "crc32c": "404e1d3d", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "7de22c98-e613-419a-a063-463b009d9977", "version": "2018-10-24T23:43:49.459923Z" }, - { + "analysis_file/babd98f7-c1ae-4a5d-bf85-7cb347a3ce96": { "content-type": "text/csv; dcp-type=data", "crc32c": "a44f5276", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "a4c71562-cc3a-4aee-950a-c4e3c168a466", "version": "2018-10-24T23:43:49.707708Z" }, - { + "analysis_file/3314dd32-6acf-4841-83a4-03d4807d1365": { "content-type": "text/csv; dcp-type=data", "crc32c": "433f461e", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "fae742b9-62fe-45bb-8769-39c2c841f292", "version": "2018-10-24T23:43:50.045854Z" }, - { + "analysis_file/f6e76583-bc31-41e1-8695-7198e7842ea0": { "content-type": "text/csv; dcp-type=data", "crc32c": "d9724b31", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "787b88b9-8f21-4a68-b8b6-3b31a9e7fd30", "version": "2018-10-24T23:43:50.368499Z" }, - { + "analysis_file/f2473460-2b19-4b16-97c7-6eaa9060df6f": { "content-type": "application/gzip; dcp-type=data", "crc32c": "73d003d2", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "4050cf25-f78a-49e2-9750-f339d459b76b", "version": "2018-10-24T23:43:50.747688Z" }, - { + "analysis_file/0fa2c00a-02e4-444d-998d-b812d647565f": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "80815add", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "dc11cd36-b5d1-465f-95ef-0609d7ab7cf9", "version": "2018-10-24T23:43:50.982201Z" }, - { + "analysis_file/09989709-cca8-4f82-a07f-6fa6a9fa3e03": { "content-type": "application/gzip; dcp-type=data", "crc32c": "06d1e1c8", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "2db1b81c-3070-472f-b8ab-071c4a38f830", "version": "2018-10-24T23:43:51.288002Z" }, - { + "analysis_file/020634de-da4b-47bb-b084-8c2d7e70ae17": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "c7497587", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "0c800745-b4d5-46ad-8a76-24c320b08b6b", "version": "2018-10-24T23:43:51.477217Z" }, - { + "analysis_file/f6a47716-c494-4229-85e9-bd1f20afa5d1": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "7c9e2e1a", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "044fddd5-1bee-4f6e-8214-231061631b7f", "version": "2018-10-24T23:43:51.945446Z" }, - { + "analysis_file/c82423e7-a621-4fee-bed2-5efa916124e3": { "content-type": "application/json; dcp-type=data", "crc32c": "a2113239", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "ca09473c-84b1-4ccd-9c14-e6b71bcf310a", "version": "2018-10-24T23:43:52.750795Z" }, - { + "analysis_file/401a3d93-c4c9-4f59-960e-41de71839619": { "content-type": "application/json; dcp-type=data", "crc32c": "444a7707", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "c42f9b25-fa4a-40e8-b9fd-69e987d28d47", "version": "2018-10-24T23:43:52.990198Z" }, - { + "analysis_file/f06c17a5-8197-4b6f-928a-55ffa8d796d2": { "content-type": "application/json; dcp-type=data", "crc32c": "f35d7e55", "indexed": false, @@ -240,7 +241,7 @@ "uuid": "8f6beb7b-feff-4d5d-93d9-8294f96a9734", "version": "2018-10-24T23:43:53.140897Z" }, - { + "analysis_file/95bdd09a-cc14-4a7b-b0f8-96cd4d6dcb1c": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "53d7c1b4", "indexed": false, @@ -252,7 +253,7 @@ "uuid": "19dfd30d-d489-4cc8-b3ef-af4d83281767", "version": "2018-10-24T23:43:53.389145Z" }, - { + "analysis_file/a3d20426-80af-4c2b-90a6-6e6644539aad": { "content-type": "application/json; dcp-type=data", "crc32c": "88068bce", "indexed": false, @@ -264,7 +265,7 @@ "uuid": "3a0aaa8f-7a5a-4ba7-ac90-72d786c3b3c0", "version": "2018-10-24T23:43:53.732254Z" }, - { + "analysis_file/f6cdb1dd-df7c-4dab-bdd1-4bb59a2044f7": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "f672e644", "indexed": false, @@ -276,7 +277,7 @@ "uuid": "5650bf89-3095-4d11-be7a-83af89e197c6", "version": "2018-10-24T23:43:53.874430Z" }, - { + "analysis_file/4de506d4-78d1-4de2-9780-e91f8a9d7b6d": { "content-type": "application/json; dcp-type=data", "crc32c": "38a3821e", "indexed": false, @@ -288,7 +289,7 @@ "uuid": "f231c645-1ac0-460d-b4db-90d3b4eea222", "version": "2018-10-24T23:43:54.039310Z" }, - { + "analysis_file/c8aa1527-f40c-4e50-b7ca-51646562422b": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "afce17ed", "indexed": false, @@ -300,7 +301,7 @@ "uuid": "6217ca7d-ebcc-4e0d-80db-0ee2c23ca6db", "version": "2018-10-24T23:43:54.263560Z" }, - { + "analysis_file/6cc5378a-295b-4e72-80a2-370434fd2b94": { "content-type": "application/json; dcp-type=data", "crc32c": "c6565f75", "indexed": false, @@ -312,7 +313,7 @@ "uuid": "7b322881-afd7-4896-8d42-8c0ea2979dd0", "version": "2018-10-24T23:43:54.428325Z" }, - { + "analysis_file/75178504-d0ef-4d32-a3e6-6faa1026be84": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "c0b4fc1c", "indexed": false, @@ -324,7 +325,7 @@ "uuid": "6c0d9f3f-3112-45af-9d54-37ceb7639564", "version": "2018-10-24T23:43:54.802055Z" }, - { + "analysis_file/215add4a-6239-4443-9b0c-c5e2b6e7052f": { "content-type": "application/json; dcp-type=data", "crc32c": "80af448b", "indexed": false, @@ -336,7 +337,7 @@ "uuid": "31ef1fee-8185-4b0e-a540-c1ea108f5a44", "version": "2018-10-24T23:43:55.053768Z" }, - { + "analysis_file/f894b6e3-98b3-4161-97e4-a8d4ac9ad677": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "f282f971", "indexed": false, @@ -348,7 +349,7 @@ "uuid": "69fa904c-cd11-4560-817b-e98b2775da88", "version": "2018-10-24T23:43:55.200260Z" }, - { + "analysis_file/f909af01-995b-499a-9086-fd2a90123102": { "content-type": "application/json; dcp-type=data", "crc32c": "b89e6723", "indexed": false, @@ -360,7 +361,7 @@ "uuid": "436c0cd7-e202-4e40-85aa-cc15cca31f7a", "version": "2018-10-24T23:43:55.390923Z" }, - { + "analysis_file/75d692f4-e796-453d-b260-44a42f126c93": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "fa0eba46", "indexed": false, @@ -372,7 +373,7 @@ "uuid": "37cc585b-10f2-4c7f-93be-f7ab4b291b3d", "version": "2018-10-24T23:43:55.557557Z" }, - { + "analysis_file/08be64a7-9ef4-4d17-b7d8-41f79c24c987": { "content-type": "application/json; dcp-type=data", "crc32c": "88035931", "indexed": false, @@ -384,7 +385,7 @@ "uuid": "9bccc57c-8134-4c5f-a800-833645437fce", "version": "2018-10-24T23:43:55.823439Z" }, - { + "analysis_file/770c9eb2-f63f-4bd2-94c1-e2b6da1feeac": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "8a0c3621", "indexed": false, @@ -396,7 +397,7 @@ "uuid": "5d9fe37c-c1d5-45e8-a5e1-98409b965b57", "version": "2018-10-24T23:43:55.982645Z" }, - { + "sequence_file/b66c9d19-322c-42d4-8b65-3478fd0afa6a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "970af885", "indexed": false, @@ -408,7 +409,7 @@ "uuid": "1f5f6803-ce1f-4a4b-b19a-4e6e73e23404", "version": "2018-10-23T09:40:22.461764Z" }, - { + "sequence_file/02c8352d-b2ba-4de4-a574-335eb9a61e0e": { "content-type": "application/gzip; dcp-type=data", "crc32c": "02d2680e", "indexed": false, @@ -420,7 +421,7 @@ "uuid": "335a8e97-6534-47ea-abf4-6df0093f9b85", "version": "2018-10-23T09:40:22.722285Z" } - ], + }, "metadata": { "cell_suspension/02201088-f3be-46ce-bb04-e7c464189900": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/411cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json b/test/indexer/data/411cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json index 22766ee75..a28430432 100644 --- a/test/indexer/data/411cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json +++ b/test/indexer/data/411cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/cf93f747-1392-4670-8eb3-3ac60a96855e": { + "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "e511d1cf", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "58b69c85-f5f3-4b94-8933-5520a54a6b25", "version": "2018-10-18T20:46:12.510116Z" }, - { + "analysis_file/477c0b3e-4a06-4214-8f27-58199ba63528": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "b372aac3-0e2a-4815-9cb8-06957c0034d7", "version": "2018-10-18T20:46:12.954781Z" }, - { + "analysis_file/ad6d5170-d74b-408c-af6b-25a14315c9da": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "883bc27f", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "c81783cd-0531-4f64-9eef-a3e622152aae", "version": "2018-10-18T20:46:13.142208Z" }, - { + "analysis_file/50be9b67-fae5-4472-9719-478dd1303d6e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "182c881d", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "17456232-f453-4178-b6d4-4c28840e0e9f", "version": "2018-10-18T20:46:13.433149Z" }, - { + "analysis_file/fd16b62e-e540-4f03-8ba0-07d0c204e3c8": { "content-type": "text/csv; dcp-type=data", "crc32c": "d3902ae4", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "4cca0b74-7bfb-45a5-8a26-7342151805c9", "version": "2018-10-18T20:46:14.214293Z" }, - { + "analysis_file/3c41b5b6-f480-4d47-8c5e-155e7c1adf54": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "1462f373", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "0664a03c-9199-430e-9df6-e83e4a77df16", "version": "2018-10-18T20:46:14.565244Z" }, - { + "analysis_file/022a217c-384d-4d9d-8631-6397b6838e3a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "63dd3167", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "a12a783c-6b91-4788-80b3-f25dae7838ce", "version": "2018-10-18T20:46:14.923428Z" }, - { + "analysis_file/9b778e46-0c51-4260-8e3f-000ecc145f0a": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "a40c0ecb", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "52d08a61-8d7b-4fd6-98e6-0620f815ecc5", "version": "2018-10-18T20:46:15.089157Z" }, - { + "analysis_file/af025a74-53f1-4972-b50d-53095b5ffac2": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "03eb39ec", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "40bb9b37-9c3c-4be4-adf6-c8609493d223", "version": "2018-10-18T20:46:15.963496Z" }, - { + "analysis_file/e8395271-7c8e-4ec4-9598-495df43fe5fd": { "content-type": "text/html; dcp-type=data", "crc32c": "d5973bce", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "05311530-98da-4ac7-a4da-244c0a19ae4a", "version": "2018-10-18T20:46:17.373562Z" }, - { + "analysis_file/211a8fbf-b190-4576-ac2f-2b1a91743abb": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7c54ea3d", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "d0757b34-5974-44e3-a8ae-5b60f7691913", "version": "2018-10-18T20:46:18.194283Z" }, - { + "analysis_file/17222e3a-5757-45e9-9dfe-c4b6aa10f28a": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "5d8aea02-2dff-4bda-a218-2ee4c5cabfb4", "version": "2018-10-18T20:46:18.594371Z" }, - { + "analysis_file/2fb8a975-b50c-4528-b850-838a19e19a1e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "283d035a", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "934faa14-ec75-4171-8c08-5ab20cc6ebff", "version": "2018-10-18T20:46:18.842610Z" }, - { + "sequence_file/213381ea-6161-4159-853e-cfcae4968001": { "content-type": "application/gzip; dcp-type=data", "crc32c": "e80c9f6f", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "8a0670ac-e3bd-4d38-afdc-0cf6d85e6adf", "version": "2018-10-11T22:04:37.262084Z" }, - { + "sequence_file/9ee3da9e-83ca-4c02-84d6-ac09702b12ba": { "content-type": "application/gzip; dcp-type=data", "crc32c": "17a27554", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "d1e5058a-b53c-4e71-9cbc-1853d95b75bd", "version": "2018-10-11T22:04:37.518108Z" }, - { + "sequence_file/330a08ca-ae8e-4f1f-aa03-970abcd27f39": { "content-type": "application/gzip; dcp-type=data", "crc32c": "577e04eb", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "a36fe69b-874b-4b9b-8e77-68be23cf98cd", "version": "2018-10-11T22:04:37.811384Z" }, - { + "supplementary_file/281c2d08-9e43-47f9-b937-e733e3ba3322": { "content-type": "application/pdf; dcp-type=data", "crc32c": "1e67ff31", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "9485d3c7-55f6-49f5-9eb1-ff85d8e4ef9f", "version": "2018-10-11T22:04:38.049605Z" }, - { + "supplementary_file/ae1d6fa7-964f-465a-8c78-565206827434": { "content-type": "application/pdf; dcp-type=data", "crc32c": "201fded1", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "05f653e7-2920-499b-95fe-455d585da2b7", "version": "2018-10-11T22:04:38.189879Z" }, - { + "supplementary_file/f518a8cc-e1d9-4fc9-bc32-491dd8543902": { "content-type": "application/pdf; dcp-type=data", "crc32c": "47441108", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "5eca9eb4-f837-4aa4-98e1-172a7c6da7ee", "version": "2018-10-11T22:04:38.356356Z" } - ], + }, "metadata": { "cell_suspension/803fd65a-c578-4c4f-a39e-bedec24e2578": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/412cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json b/test/indexer/data/412cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json index 3b81dcf53..2d84ad087 100644 --- a/test/indexer/data/412cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json +++ b/test/indexer/data/412cd8d5-5990-43cd-84cc-6c7796b8a76d.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/cf93f747-1392-4670-8eb3-3ac60a96855e": { + "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "e511d1cf", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "58b69c85-f5f3-4b94-8933-5520a54a6b25", "version": "2018-10-18T20:46:12.510116Z" }, - { + "analysis_file/477c0b3e-4a06-4214-8f27-58199ba63528": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "b372aac3-0e2a-4815-9cb8-06957c0034d7", "version": "2018-10-18T20:46:12.954781Z" }, - { + "analysis_file/ad6d5170-d74b-408c-af6b-25a14315c9da": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "883bc27f", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "c81783cd-0531-4f64-9eef-a3e622152aae", "version": "2018-10-18T20:46:13.142208Z" }, - { + "analysis_file/50be9b67-fae5-4472-9719-478dd1303d6e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "182c881d", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "17456232-f453-4178-b6d4-4c28840e0e9f", "version": "2018-10-18T20:46:13.433149Z" }, - { + "analysis_file/fd16b62e-e540-4f03-8ba0-07d0c204e3c8": { "content-type": "text/csv; dcp-type=data", "crc32c": "d3902ae4", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "4cca0b74-7bfb-45a5-8a26-7342151805c9", "version": "2018-10-18T20:46:14.214293Z" }, - { + "analysis_file/3c41b5b6-f480-4d47-8c5e-155e7c1adf54": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "1462f373", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "0664a03c-9199-430e-9df6-e83e4a77df16", "version": "2018-10-18T20:46:14.565244Z" }, - { + "analysis_file/022a217c-384d-4d9d-8631-6397b6838e3a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "63dd3167", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "a12a783c-6b91-4788-80b3-f25dae7838ce", "version": "2018-10-18T20:46:14.923428Z" }, - { + "analysis_file/9b778e46-0c51-4260-8e3f-000ecc145f0a": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "a40c0ecb", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "52d08a61-8d7b-4fd6-98e6-0620f815ecc5", "version": "2018-10-18T20:46:15.089157Z" }, - { + "analysis_file/af025a74-53f1-4972-b50d-53095b5ffac2": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "03eb39ec", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "40bb9b37-9c3c-4be4-adf6-c8609493d223", "version": "2018-10-18T20:46:15.963496Z" }, - { + "analysis_file/e8395271-7c8e-4ec4-9598-495df43fe5fd": { "content-type": "text/html; dcp-type=data", "crc32c": "d5973bce", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "05311530-98da-4ac7-a4da-244c0a19ae4a", "version": "2018-10-18T20:46:17.373562Z" }, - { + "analysis_file/211a8fbf-b190-4576-ac2f-2b1a91743abb": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7c54ea3d", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "d0757b34-5974-44e3-a8ae-5b60f7691913", "version": "2018-10-18T20:46:18.194283Z" }, - { + "analysis_file/17222e3a-5757-45e9-9dfe-c4b6aa10f28a": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "5d8aea02-2dff-4bda-a218-2ee4c5cabfb4", "version": "2018-10-18T20:46:18.594371Z" }, - { + "analysis_file/2fb8a975-b50c-4528-b850-838a19e19a1e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "283d035a", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "934faa14-ec75-4171-8c08-5ab20cc6ebff", "version": "2018-10-18T20:46:18.842610Z" }, - { + "sequence_file/213381ea-6161-4159-853e-cfcae4968001": { "content-type": "application/gzip; dcp-type=data", "crc32c": "e80c9f6f", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "8a0670ac-e3bd-4d38-afdc-0cf6d85e6adf", "version": "2018-10-11T22:04:37.262084Z" }, - { + "sequence_file/9ee3da9e-83ca-4c02-84d6-ac09702b12ba": { "content-type": "application/gzip; dcp-type=data", "crc32c": "17a27554", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "d1e5058a-b53c-4e71-9cbc-1853d95b75bd", "version": "2018-10-11T22:04:37.518108Z" }, - { + "sequence_file/330a08ca-ae8e-4f1f-aa03-970abcd27f39": { "content-type": "application/gzip; dcp-type=data", "crc32c": "577e04eb", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "a36fe69b-874b-4b9b-8e77-68be23cf98cd", "version": "2018-10-11T22:04:37.811384Z" }, - { + "supplementary_file/281c2d08-9e43-47f9-b937-e733e3ba3322": { "content-type": "application/pdf; dcp-type=data", "crc32c": "1e67ff31", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "9485d3c7-55f6-49f5-9eb1-ff85d8e4ef9f", "version": "2018-10-11T22:04:38.049605Z" }, - { + "supplementary_file/ae1d6fa7-964f-465a-8c78-565206827434": { "content-type": "application/pdf; dcp-type=data", "crc32c": "201fded1", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "05f653e7-2920-499b-95fe-455d585da2b7", "version": "2018-10-11T22:04:38.189879Z" }, - { + "supplementary_file/f518a8cc-e1d9-4fc9-bc32-491dd8543902": { "content-type": "application/pdf; dcp-type=data", "crc32c": "47441108", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "5eca9eb4-f837-4aa4-98e1-172a7c6da7ee", "version": "2018-10-11T22:04:38.356356Z" } - ], + }, "metadata": { "cell_suspension/803fd65a-c578-4c4f-a39e-bedec24e2578": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/4426adc5-b3c5-5aab-ab86-51d8ce44dfbe.tdr.hca.json b/test/indexer/data/4426adc5-b3c5-5aab-ab86-51d8ce44dfbe.tdr.hca.json index 032a1c97e..d0c12eb9e 100644 --- a/test/indexer/data/4426adc5-b3c5-5aab-ab86-51d8ce44dfbe.tdr.hca.json +++ b/test/indexer/data/4426adc5-b3c5-5aab-ab86-51d8ce44dfbe.tdr.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/b8b76328-854c-5862-a688-9b761a9cea86": { "name": "6f5ddf2c-382d-4c0a-a506-3a5286067c83_qc.bam.bai", "uuid": "23b7f3f8-b707-5f3c-b8e6-9173efa9dcf8", "version": "2021-04-09T18:59:13.000000Z", @@ -11,7 +11,7 @@ "crc32c": "776f1ec2", "sha256": "1bb86ee570e328dcd72a684689ddd87c966209cfc4b2b5c36e50dd0e4c156cab" }, - { + "supplementary_file/e738a267-87fc-4070-abc7-b3be6442c6d0": { "name": "TissueDissociationProtocol.pdf", "uuid": "6578c322-7060-4c82-8469-9e54100e6b44", "version": "2019-05-16T06:24:31.517373Z", @@ -24,7 +24,7 @@ "sha256": "6929799f227ae5f0b3e0167a6cf2bd683db097848af6ccde6329185212598779", "s3_etag": "7e892bf8f6aa489ccb08a995c7f017e1" }, - { + "supplementary_file/a06cb5d5-2675-4d64-aeb8-79e0103715f3": { "name": "SmartSeq2_sequencing_protocol.pdf", "uuid": "bf92ef4a-c422-44fb-bfc1-c2f86528b86b", "version": "2019-05-16T06:24:31.828599Z", @@ -37,7 +37,7 @@ "sha256": "9c93a354a8636c041a31ba6f3fb00ef20352e1b853d8080d63a654221cb35673", "s3_etag": "2742e1e78f6d4663bf41d3080396695c" }, - { + "analysis_file/7a015307-6db9-541f-aaae-db9fdb41000f": { "name": "6f5ddf2c-382d-4c0a-a506-3a5286067c83_qc.bam", "uuid": "c8e93df7-2623-5e86-890a-aca3e925795e", "version": "2021-04-09T18:59:14.000000Z", @@ -48,7 +48,7 @@ "crc32c": "663a65bd", "sha256": "ee0f3adaae040b58653e601c9c031e50d2537f05df6e4ce16e1f8e2cf48b50e4" }, - { + "supplementary_file/01a1d04b-05d0-4904-b627-68b0dc02bc17": { "name": "SmartSeq2_RTPCR_protocol.pdf", "uuid": "cd8e02d1-d0f9-4094-9a31-329931df60dc", "version": "2019-05-16T06:24:31.672118Z", @@ -61,7 +61,7 @@ "sha256": "2f6866c4ede92123f90dd15fb180fac56e33309b8fd3f4f52f263ed2f8af2f16", "s3_etag": "846fd9e6b98041df46a1ddb94e85b6b9" }, - { + "sequence_file/ee7404a4-c183-4a75-8bd1-34b5fc140e81": { "name": "22167_7#271_1.fastq.gz", "uuid": "ebf2947d-76d2-405b-a559-68c6ebb1b2d5", "version": "2019-05-16T02:50:21.018890Z", @@ -74,7 +74,7 @@ "sha256": "9c74e575192defc4e6d40518fd590b6a13d134b3d87a97a6b5140b36f26ce01a", "s3_etag": "8786a82f739d1848aa5be480faf65e70" }, - { + "sequence_file/8f8b9587-237f-4995-9461-c96eac53d615": { "name": "22167_7#271_2.fastq.gz", "uuid": "f4132e3a-c468-4ca3-ad7b-b97b61054151", "version": "2019-05-16T02:50:21.322397Z", @@ -87,7 +87,7 @@ "sha256": "1f6c6f46078f45d6a308c819fe186ce25dcd36116497d9eb21990113c7fabb1e", "s3_etag": "6aca4df2ef18b97243967887837c3bef" } - ], + }, "metadata": { "sequence_file/8f8b9587-237f-4995-9461-c96eac53d615": { "describedBy": "https://schema.humancellatlas.org/type/file/9.0.0/sequence_file", diff --git a/test/indexer/data/4afbb0ea-81ad-49dc-9b12-9f77f4f50be8.dss.hca.json b/test/indexer/data/4afbb0ea-81ad-49dc-9b12-9f77f4f50be8.dss.hca.json index 40fff54ea..bd020732e 100644 --- a/test/indexer/data/4afbb0ea-81ad-49dc-9b12-9f77f4f50be8.dss.hca.json +++ b/test/indexer/data/4afbb0ea-81ad-49dc-9b12-9f77f4f50be8.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/386d5eaf-ef6c-40d1-afd5-5f2813bc1272": { "sha1": "e89a3100754042d8dcb555031e6c00ec48113b0b", "name": "MantonCB2_HiSeq_6_S14_L003_R2_001.fastq.gz", "uuid": "386d5eaf-ef6c-40d1-afd5-5f2813bc1272", @@ -12,7 +12,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3751107694 }, - { + "sequence_file/ad0ec998-0cc3-4f43-8104-3f14cb86cac5": { "sha1": "1c3979051c62eae09068477f20db0201f26d5429", "name": "MantonCB2_HiSeq_7_S15_L003_R1_001.fastq.gz", "uuid": "ad0ec998-0cc3-4f43-8104-3f14cb86cac5", @@ -24,7 +24,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1219960071 }, - { + "sequence_file/b80d05bc-c256-4689-a7a8-2e4d63e8ecb3": { "sha1": "0630f27389bbabcd08722863946f7d215ab73f57", "name": "MantonCB2_HiSeq_4_S12_L004_R1_001.fastq.gz", "uuid": "b80d05bc-c256-4689-a7a8-2e4d63e8ecb3", @@ -36,7 +36,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1292784451 }, - { + "sequence_file/e5dffb26-e7c6-4188-b99e-73e5033e1617": { "sha1": "c4bc6dc1f57b43b0904722cbb66d4f10e74d86a9", "name": "MantonCB4_HiSeq_5_S29_L007_I1_001.fastq.gz", "uuid": "e5dffb26-e7c6-4188-b99e-73e5033e1617", @@ -48,7 +48,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 408778773 }, - { + "sequence_file/a75378cf-c7fc-4d86-806d-377bbe925e36": { "sha1": "eb6c9d0364b8f90e5049ce5e6b013170f32aca60", "name": "MantonCB3_HiSeq_8_S24_L005_R1_001.fastq.gz", "uuid": "a75378cf-c7fc-4d86-806d-377bbe925e36", @@ -60,7 +60,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1175195369 }, - { + "sequence_file/fb3db3b3-4d84-4016-826d-65cee4cb330b": { "sha1": "afb6d1da7902fcf00825cec58bc1a64a1a0604ea", "name": "MantonCB3_HiSeq_2_S18_L006_R1_001.fastq.gz", "uuid": "fb3db3b3-4d84-4016-826d-65cee4cb330b", @@ -72,7 +72,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1413169243 }, - { + "sequence_file/25879d3f-6595-43d3-a5ca-5cdecea9eb51": { "sha1": "ee505cb2dfd9822f3c12167cfb088f01c90dee8a", "name": "MantonCB1_HiSeq_6_S6_L002_I1_001.fastq.gz", "uuid": "25879d3f-6595-43d3-a5ca-5cdecea9eb51", @@ -84,7 +84,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 458051283 }, - { + "sequence_file/4f9182a0-1e1e-48c3-a4aa-010a5df37deb": { "sha1": "b56b27882d262430e71263fe42c90b8ddecb92e1", "name": "MantonCB4_HiSeq_3_S27_L008_R1_001.fastq.gz", "uuid": "4f9182a0-1e1e-48c3-a4aa-010a5df37deb", @@ -96,7 +96,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1196733324 }, - { + "sequence_file/9853a614-30c3-40bb-b356-4e59966abc20": { "sha1": "805d1cc1a13da7721f2ad84becc7a9c17a264b2e", "name": "MantonCB3_HiSeq_6_S22_L005_R1_001.fastq.gz", "uuid": "9853a614-30c3-40bb-b356-4e59966abc20", @@ -108,7 +108,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1387105201 }, - { + "sequence_file/24b449a3-8d67-4b0c-9f00-9ba3cacfcbff": { "sha1": "378c021db1f8b08d1b08db9a80fdd56e880e0ffb", "name": "MantonCB4_HiSeq_1_S25_L007_R2_001.fastq.gz", "uuid": "24b449a3-8d67-4b0c-9f00-9ba3cacfcbff", @@ -120,7 +120,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 4123077379 }, - { + "sequence_file/c122cf51-5d3a-428c-bfa3-d6c09d80f138": { "sha1": "5e8251d1f485a2ba7955e9e741261d9d4def08bf", "name": "MantonCB1_HiSeq_5_S5_L001_I1_001.fastq.gz", "uuid": "c122cf51-5d3a-428c-bfa3-d6c09d80f138", @@ -132,7 +132,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 392602803 }, - { + "sequence_file/53ca1f09-4985-4827-a3cb-5f53d2cc543e": { "sha1": "dbf250bb02b2c2d0544903ee43f35948a82de451", "name": "MantonCB3_HiSeq_7_S23_L006_R2_001.fastq.gz", "uuid": "53ca1f09-4985-4827-a3cb-5f53d2cc543e", @@ -144,7 +144,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3537869146 }, - { + "sequence_file/d4f454d6-3ffc-4b0c-9449-212ecdbd9d25": { "sha1": "b58bc38e9fd199e31f559dea432740efb4c3e130", "name": "MantonCB4_HiSeq_8_S32_L007_R1_001.fastq.gz", "uuid": "d4f454d6-3ffc-4b0c-9449-212ecdbd9d25", @@ -156,7 +156,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1237099013 }, - { + "sequence_file/102e7a1f-0521-4e05-92ce-03555b48af78": { "sha1": "e6bf95b4df3fcb9979936539b7d3544512dd143f", "name": "MantonCB4_HiSeq_1_S25_L007_R1_001.fastq.gz", "uuid": "102e7a1f-0521-4e05-92ce-03555b48af78", @@ -168,7 +168,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1393355309 }, - { + "sequence_file/e3d601e3-4bbe-4f24-8ee3-03ac35589548": { "sha1": "4022543b91661d043bc881cf4c308cb0f63adf5a", "name": "MantonCB1_HiSeq_4_S4_L001_R2_001.fastq.gz", "uuid": "e3d601e3-4bbe-4f24-8ee3-03ac35589548", @@ -180,7 +180,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3152599477 }, - { + "sequence_file/72dcca44-72b1-41bb-a04e-7a90a535eb5c": { "sha1": "a8816bfe8df91d41ca3fb20bf76c957e1a6f23b4", "name": "MantonCB4_HiSeq_5_S29_L007_R2_001.fastq.gz", "uuid": "72dcca44-72b1-41bb-a04e-7a90a535eb5c", @@ -192,7 +192,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3492388308 }, - { + "sequence_file/2187a383-7663-49d1-9383-26107fa4e1e3": { "sha1": "9b73dcda41996d48c63f6ceb355c3e40338673e6", "name": "MantonCB1_HiSeq_2_S2_L001_R2_001.fastq.gz", "uuid": "2187a383-7663-49d1-9383-26107fa4e1e3", @@ -204,7 +204,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3038472335 }, - { + "sequence_file/1ab32587-0198-461d-97f1-34926b5de5bf": { "sha1": "627294252c5bf209c289e669d5501d518863567b", "name": "MantonCB1_HiSeq_8_S8_L002_R2_001.fastq.gz", "uuid": "1ab32587-0198-461d-97f1-34926b5de5bf", @@ -216,7 +216,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 4273824897 }, - { + "sequence_file/4371755a-4549-4124-bdf4-ea2a768bd5c9": { "sha1": "4ab2d9b40c232081efa2aabb63a08d9a98c5a1e7", "name": "MantonCB1_HiSeq_8_S8_L001_I1_001.fastq.gz", "uuid": "4371755a-4549-4124-bdf4-ea2a768bd5c9", @@ -228,7 +228,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 476409751 }, - { + "sequence_file/bdea3da9-33ff-4702-81b1-a4dd99fb5a84": { "sha1": "bb131d875e1bc088bfaabeb50ca47db57d882901", "name": "MantonCB3_HiSeq_5_S21_L005_R1_001.fastq.gz", "uuid": "bdea3da9-33ff-4702-81b1-a4dd99fb5a84", @@ -240,7 +240,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1316899264 }, - { + "sequence_file/d566502b-0ea1-4060-8f62-98dbabc3ee34": { "sha1": "a9dc2da40a922fd601364d1fd841b0c809b7854b", "name": "MantonCB2_HiSeq_7_S15_L003_I1_001.fastq.gz", "uuid": "d566502b-0ea1-4060-8f62-98dbabc3ee34", @@ -252,7 +252,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 403832328 }, - 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{ + "sequence_file/450fde91-2153-42ee-ba7a-5cf4b59eb587": { "sha1": "57040b9f591b295e862ad29fee9f9e956dbdfc60", "name": "MantonCB2_HiSeq_4_S12_L004_I1_001.fastq.gz", "uuid": "450fde91-2153-42ee-ba7a-5cf4b59eb587", @@ -2184,7 +2184,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 420517372 }, - { + "sequence_file/6492a26d-5c16-4e75-a9c5-a9b8f8e28eff": { "sha1": "ab1e832c4024ef4c5ce0306635a47612634364e5", "name": "MantonCB1_HiSeq_6_S6_L002_R1_001.fastq.gz", "uuid": "6492a26d-5c16-4e75-a9c5-a9b8f8e28eff", @@ -2196,7 +2196,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1355562686 }, - { + "sequence_file/3262b323-8545-4c41-ab65-432b635781a7": { "sha1": "d11d97da785ee51c0a22306af263e9f66cd5bcb7", "name": "MantonCB4_HiSeq_5_S29_L008_R1_001.fastq.gz", "uuid": "3262b323-8545-4c41-ab65-432b635781a7", @@ -2208,7 +2208,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1160332360 }, - { + "sequence_file/a8b86342-3b98-4030-bdfa-a7cc45e3d256": { "sha1": "8adfc8b68d8ec756923fa649a892210f9ca25514", "name": "MantonCB2_HiSeq_6_S14_L004_R2_001.fastq.gz", "uuid": "a8b86342-3b98-4030-bdfa-a7cc45e3d256", @@ -2220,7 +2220,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3853958567 }, - { + "sequence_file/71080f34-4468-4ca5-8a6c-bf688ab31462": { "sha1": "038c50abd15b42b72a06440ade8f0796ffb4a6b2", "name": "MantonCB2_HiSeq_8_S16_L003_R2_001.fastq.gz", "uuid": "71080f34-4468-4ca5-8a6c-bf688ab31462", @@ -2232,7 +2232,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3596944953 }, - { + "sequence_file/6f0e108d-30da-4242-b489-5eb638e2db96": { "sha1": "0ec778e17ed5df394046460f35839eb2157bb45f", "name": "MantonCB3_HiSeq_3_S19_L006_R1_001.fastq.gz", "uuid": "6f0e108d-30da-4242-b489-5eb638e2db96", @@ -2244,7 +2244,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1273015552 }, - { + "sequence_file/f087e6a6-b9cd-4f26-8932-167d246a6e02": { "sha1": "443a152965d9a8ea8bd145eb6f4a276bf11faf7f", "name": "MantonCB4_HiSeq_7_S31_L007_R1_001.fastq.gz", "uuid": "f087e6a6-b9cd-4f26-8932-167d246a6e02", @@ -2256,7 +2256,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1459708868 }, - { + "sequence_file/fd194d02-d6c0-4933-a54b-805e7b3a9bab": { "sha1": "e4dccff557802016145cfebce3450b8ba609eed3", "name": "MantonCB3_HiSeq_4_S20_L006_R1_001.fastq.gz", "uuid": "fd194d02-d6c0-4933-a54b-805e7b3a9bab", @@ -2268,7 +2268,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 960083469 }, - { + "sequence_file/ed3cbb48-adf8-4531-919a-a467fd838940": { "sha1": "1db09f0b7367dd86bc05e242c48987abccbb797c", "name": "MantonCB2_HiSeq_1_S9_L003_I1_001.fastq.gz", "uuid": "ed3cbb48-adf8-4531-919a-a467fd838940", @@ -2280,7 +2280,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 374190901 }, - { + "sequence_file/8ba887c3-e44d-4644-8cd6-a58b7cfcf2c0": { "sha1": "113836a8433be46fd0689f68d693f1ee5627d29e", "name": "MantonCB4_HiSeq_7_S31_L008_R1_001.fastq.gz", "uuid": "8ba887c3-e44d-4644-8cd6-a58b7cfcf2c0", @@ -2292,7 +2292,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1440763662 }, - { + "sequence_file/f72531f8-851a-4f23-8bcd-b2b47bad0f84": { "sha1": "24975b23849f487733935b2875daf0deb241fbc9", "name": "MantonCB4_HiSeq_5_S29_L008_I1_001.fastq.gz", "uuid": "f72531f8-851a-4f23-8bcd-b2b47bad0f84", @@ -2304,7 +2304,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 388472244 } - ], + }, "metadata": { "project/6504d48c-1610-43aa-8cf8-214a960e110c": { "content": { diff --git a/test/indexer/data/4b03c1ce-9df1-5cd5-a8e4-48a2fe095081.dss.hca.json b/test/indexer/data/4b03c1ce-9df1-5cd5-a8e4-48a2fe095081.dss.hca.json index 13df425de..b632eb090 100644 --- a/test/indexer/data/4b03c1ce-9df1-5cd5-a8e4-48a2fe095081.dss.hca.json +++ b/test/indexer/data/4b03c1ce-9df1-5cd5-a8e4-48a2fe095081.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "supplementary_file/0c5ab869-da2d-5c11-b4ae-f978a052899f": { "name": "E-MTAB-7316.processed.5.zip", "uuid": "0c5ab869-da2d-5c11-b4ae-f978a052899f", "version": "2021-02-10T16:56:40.419579Z", @@ -11,7 +11,7 @@ "crc32c": "5bf9776f", "sha256": "053074e25a96a463c081e38bcd02662ba1536dd0cb71411bd111b8a2086a03e1" }, - { + "supplementary_file/5b465aad-0981-5152-b468-e615e20f5884": { "name": "E-MTAB-7316.processed.7.zip", "uuid": "5b465aad-0981-5152-b468-e615e20f5884", "version": "2021-02-10T16:56:40.419579Z", @@ -22,7 +22,7 @@ "crc32c": "c8c42fc3", "sha256": "af3ea779ca01a2ba65f9415720a44648ef28a6ed73c9ec30e54ed4ba9895f590" }, - { + "supplementary_file/68bda896-3b3e-5f2a-9212-f4030a0f37e2": { "name": "E-MTAB-7316.processed.4.zip", "uuid": "68bda896-3b3e-5f2a-9212-f4030a0f37e2", "version": "2021-02-10T16:56:40.419579Z", @@ -33,7 +33,7 @@ "crc32c": "82ee1217", "sha256": "f1458913c223553d09966ff94f0ed3d87e7cdfce21904f32943d70f691d8f7a0" }, - { + "supplementary_file/733318e0-19c2-51e8-9ad6-d94ad562dd46": { "name": "E-MTAB-7316.processed.2.zip", "uuid": "733318e0-19c2-51e8-9ad6-d94ad562dd46", "version": "2021-02-10T16:56:40.419579Z", @@ -44,7 +44,7 @@ "crc32c": "15b69eed", "sha256": "cb7beb6f4e8c684e41d25aa4dc1294dcb1e070e87f9ed852463bf651d511a36b" }, - { + "supplementary_file/87f31102-ebbc-5875-abdf-4fa5cea48e8d": { "name": "E-MTAB-7316.processed.1.zip", "uuid": "87f31102-ebbc-5875-abdf-4fa5cea48e8d", "version": "2021-02-10T16:56:40.419579Z", @@ -55,7 +55,7 @@ "crc32c": "4f3d0c47", "sha256": "331bd925c08539194eb06e197a1238e1306c3b7876b6fe13548d03824cc4b68b" }, - { + "supplementary_file/b905c8be-2e2d-592c-8481-3eb7a87c6484": { "name": "WongRetinaCelltype.csv", "uuid": "b905c8be-2e2d-592c-8481-3eb7a87c6484", "version": "2021-02-10T16:56:40.419579Z", @@ -66,7 +66,7 @@ "crc32c": "42fcdb28", "sha256": "4f515b8fbbec8bfbc72c8c0d656897ee37bfa30bab6eb50fdc641924227be674" }, - { + "supplementary_file/c59e2de5-01fe-56eb-be56-679ed14161bf": { "name": "E-MTAB-7316.processed.3.zip", "uuid": "c59e2de5-01fe-56eb-be56-679ed14161bf", "version": "2021-02-10T16:56:40.419579Z", @@ -77,7 +77,7 @@ "crc32c": "0209e859", "sha256": "6372732e9fe9b8d58c8be8df88ea439d5c68ee9bb02e3d472c94633fadf782a1" }, - { + "supplementary_file/cade4593-bfba-56ed-80ab-080d0de7d5a4": { "name": "E-MTAB-7316.processed.6.zip", "uuid": "cade4593-bfba-56ed-80ab-080d0de7d5a4", "version": "2021-02-10T16:56:40.419579Z", @@ -88,7 +88,7 @@ "crc32c": "a21bdb72", "sha256": "1c57cba1ade259fc9ec56b914b507507d75ccbf6ddeebf03ba00c922c30e0c6e" } - ], + }, "metadata": { "supplementary_file/0c5ab869-da2d-5c11-b4ae-f978a052899f": { "describedBy": "https://schema.humancellatlas.org/type/file/2.2.0/supplementary_file", diff --git a/test/indexer/data/4da04038-adab-59a9-b6c4-3a61242cc972.dss.hca.json b/test/indexer/data/4da04038-adab-59a9-b6c4-3a61242cc972.dss.hca.json index a8afbb205..dc6fa6b4b 100644 --- a/test/indexer/data/4da04038-adab-59a9-b6c4-3a61242cc972.dss.hca.json +++ b/test/indexer/data/4da04038-adab-59a9-b6c4-3a61242cc972.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/cf5d9300-3b81-52eb-a02f-25fb1364419e": { "content-type": "application/gzip; dcp-type=data", "crc32c": "aff4c924", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "2ecedea4-b90c-5025-9967-fc08f27a4dc6", "version": "2021-01-01T00:00:00.000000Z" } - ], + }, "metadata": { "project/90bf705c-d891-5ce2-aa54-094488b445c6": { "array_express_accessions": [ diff --git a/test/indexer/data/56a338fe-7554-4b5d-96a2-7df127a7640b.dss.hca.json b/test/indexer/data/56a338fe-7554-4b5d-96a2-7df127a7640b.dss.hca.json index 95d3b67ec..657c61338 100644 --- a/test/indexer/data/56a338fe-7554-4b5d-96a2-7df127a7640b.dss.hca.json +++ b/test/indexer/data/56a338fe-7554-4b5d-96a2-7df127a7640b.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/2d8cdf91-8162-4321-9923-e00e90fd9133": { "content-type": "application/gzip; dcp-type=data", "crc32c": "c3a170ed", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "2d8cdf91-8162-4321-9923-e00e90fd9133", "version": "2018-03-29T15:35:01.427209Z" }, - { + "sequence_file/d9087c74-a41e-4702-8481-cea3ef68379c": { "content-type": "application/gzip; dcp-type=data", "crc32c": "a39019f8", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "d9087c74-a41e-4702-8481-cea3ef68379c", "version": "2018-03-29T15:35:02.542108Z" } - ], + }, "metadata": { "protocol/c9a1e203-bddc-45d3-87c4-6010be8e0127": { "content": { diff --git a/test/indexer/data/587d74b4-1075-4bbf-b96a-4d1ede0481b2.dss.hca.json b/test/indexer/data/587d74b4-1075-4bbf-b96a-4d1ede0481b2.dss.hca.json index 2328e97fd..6dd4463fb 100644 --- a/test/indexer/data/587d74b4-1075-4bbf-b96a-4d1ede0481b2.dss.hca.json +++ b/test/indexer/data/587d74b4-1075-4bbf-b96a-4d1ede0481b2.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/48e42fe3-41cd-49bd-b7f4-1e3c49682131": { + "content-type": "text/plain; dcp-type=data", "crc32c": "074766b5", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "ac880333-cb92-4f55-971a-614bd065d8ef", "version": "2018-10-10T03:10:31.316188Z" }, - { + "analysis_file/8b4ed86d-99a8-4665-8f56-5a54fac6cb12": { "content-type": "text/plain; dcp-type=data", "crc32c": "0d086593", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "2866dfcd-6346-4db8-ad1c-36a50dd99f44", "version": "2018-10-10T03:10:31.541754Z" }, - { + "analysis_file/416e31c0-b0ec-4674-ab37-ab8506a9f219": { "content-type": "text/plain; dcp-type=data", "crc32c": "a45828f5", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "ee417573-2281-439a-98f9-05fcb5dd2faf", "version": "2018-10-10T03:10:31.845129Z" }, - { + "analysis_file/0b34a80b-c818-4010-b193-e44a77036e27": { "content-type": "text/plain; dcp-type=data", "crc32c": "e8b38826", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "2526ee96-c839-4d0e-869c-585fc9066cda", "version": "2018-10-10T03:10:32.229536Z" }, - { + "analysis_file/9a827f0b-d74a-436f-a39f-f8c8c9eadfa3": { "content-type": "text/plain; dcp-type=data", "crc32c": "132739db", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "3a97e493-d758-4659-84f2-1c8060161459", "version": "2018-10-10T03:10:32.503612Z" }, - { + "analysis_file/1d77c6c5-24b6-4d43-ad5d-b02fba050025": { "content-type": "text/csv; dcp-type=data", "crc32c": "062199a3", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "e399a1c6-f595-400b-b71b-ea95707fbf74", "version": "2018-10-10T03:10:32.812584Z" }, - { + "analysis_file/18791e67-0c74-43e0-be28-f0c3cd78c7a4": { "content-type": "text/csv; dcp-type=data", "crc32c": "8c75cbf7", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "35a4d374-9eb3-404b-8ef9-fa295062f969", "version": "2018-10-10T03:10:33.293412Z" }, - { + "analysis_file/9d88ec61-e189-4618-ac15-992a134749a8": { "content-type": "text/csv; dcp-type=data", "crc32c": "d0ea20f5", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "f7cbd75f-abb1-4703-bf11-7d55a28ae5c0", "version": "2018-10-10T03:10:33.596635Z" }, - { + "analysis_file/c059ee58-fbea-40d9-b552-acc1285138a3": { "content-type": "text/csv; dcp-type=data", "crc32c": "d5d1e302", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "29466279-4d12-44dd-9f87-8429b61a9f13", "version": "2018-10-10T03:10:33.862470Z" }, - { + "analysis_file/28220905-f58d-48a1-9258-53f97dd9d388": { "content-type": "text/csv; dcp-type=data", "crc32c": "38eadd82", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "4f53c7d8-13fd-4e60-8168-df2a26652d8f", "version": "2018-10-10T03:10:34.363765Z" }, - { + "analysis_file/21319798-fe9e-40a4-bcdb-a4c0780ee7bf": { "content-type": "text/csv; dcp-type=data", "crc32c": "ec79e888", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "70367094-c901-4d72-a6b3-d2859729073a", "version": "2018-10-10T03:10:34.734838Z" }, - { + "analysis_file/fd67cd38-2483-49ff-8a9b-0fe1f2607901": { "content-type": "text/csv; dcp-type=data", "crc32c": "5191baeb", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "84985aaf-e397-45ee-8b96-37ed2cc650d4", "version": "2018-10-10T03:10:35.017351Z" }, - { + "analysis_file/a5acdc07-18bf-4c06-b212-2b36e52173ef": { "content-type": "application/gzip; dcp-type=data", "crc32c": "700bd519", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "51c9ad31-5888-47eb-9e0c-02f042373c4e", "version": "2018-10-10T03:10:35.284782Z" }, - { + "analysis_file/da510e7a-5495-40c5-964d-b5291372102c": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "6ce5efc2", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "7eda54d3-3522-4079-9089-60839ee4d4f9", "version": "2018-10-10T03:10:35.686843Z" }, - { + "analysis_file/14d63962-7cd3-43fc-a4d6-dc8f761c9ebd": { "content-type": "application/gzip; dcp-type=data", "crc32c": "3d94b063", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "b1c167da-0825-4c63-9cbc-2aada1ab367c", "version": "2018-10-10T03:10:35.971561Z" }, - { + "analysis_file/b7f69b47-cbdf-4ec9-be6e-d316827aad8e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "7581baea", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "cf859616-212d-4579-bd86-03c5f8e06ec0", "version": "2018-10-10T03:10:36.453150Z" }, - { + "analysis_file/a3b39c62-3dd8-48f9-bcba-08a16f43a40b": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "24b04481", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "55878ed2-a7bf-423f-b6ee-97969e2e66ef", "version": "2018-10-10T03:10:37.034867Z" }, - { + "analysis_file/b4767274-c12b-401f-8bc1-9c9213149442": { "content-type": "application/json; dcp-type=data", "crc32c": "4e75003e", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "c1c4a2bc-b5fb-4083-af64-f5dec70d7f9d", "version": "2018-10-10T03:10:37.983672Z" }, - { + "analysis_file/dfa9da1b-3f48-4c76-86a2-833ded3e2745": { "content-type": "application/json; dcp-type=data", "crc32c": "444a7707", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "54541cc5-9010-425b-9037-22e43948c97c", "version": "2018-10-10T03:10:38.239541Z" }, - { + "analysis_file/11d84aef-c087-4fd1-bdc9-0c3402a0db01": { "content-type": "application/json; dcp-type=data", "crc32c": "444a7707", "indexed": false, @@ -240,7 +241,7 @@ "uuid": "66b8f976-6f1e-45b3-bd97-069658c3c847", "version": "2018-10-10T03:10:38.474167Z" }, - { + "analysis_file/345c5bd6-ac02-4b5d-9d53-e2ec7d7928aa": { "content-type": "application/json; dcp-type=data", "crc32c": "c6ab0701", "indexed": false, @@ -252,7 +253,7 @@ "uuid": "ac05d7fb-d6b9-4ab1-8c04-6211450dbb62", "version": "2018-10-10T03:10:38.714461Z" }, - { + "analysis_file/5aa074b9-f6e6-4790-9608-b5eb37425341": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "cd2fd51f", "indexed": false, @@ -264,7 +265,7 @@ "uuid": "0c518a52-f315-4ea2-beed-1c9d8f2d802b", "version": "2018-10-10T03:10:39.039270Z" }, - { + "analysis_file/b9672a5e-03be-41a6-9155-b29626815e11": { "content-type": "application/json; dcp-type=data", "crc32c": "b89e6723", "indexed": false, @@ -276,7 +277,7 @@ "uuid": "136108ab-277e-47a4-acc3-1feed8fb2f25", "version": "2018-10-10T03:10:39.426609Z" }, - { + "analysis_file/c0da3d0b-128b-4b37-a3d6-9538ab29e9b6": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "caaefa77", "indexed": false, @@ -288,7 +289,7 @@ "uuid": "0bef5419-739c-4a2c-aedb-43754d55d51c", "version": "2018-10-10T03:10:39.642846Z" }, - { + "analysis_file/46465f1a-a0cc-413f-aebc-505e4714c6b2": { "content-type": "application/json; dcp-type=data", "crc32c": "f629ec34", "indexed": false, @@ -300,7 +301,7 @@ "uuid": "3a5f7299-1aa1-4060-9631-212c29b4d807", "version": "2018-10-10T03:10:39.899615Z" }, - { + "analysis_file/7ba06d4d-c134-4324-84e6-3a37e57af2ce": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "59d86b68", "indexed": false, @@ -312,7 +313,7 @@ "uuid": "a8f0dc39-6019-4fc7-899d-4e34a48d03e5", "version": "2018-10-10T03:10:40.113268Z" }, - { + "analysis_file/7cd4f7cc-8712-4ffd-b91d-9cb7c6182f52": { "content-type": "application/json; dcp-type=data", "crc32c": "25d193cf", "indexed": false, @@ -324,7 +325,7 @@ "uuid": "68ba4711-1447-42ac-aa40-9c0e4cda1666", "version": "2018-10-10T03:10:40.583439Z" }, - { + "analysis_file/54604922-909e-4094-83d7-9d8ac7e7cdbd": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "17a84191", "indexed": false, @@ -336,7 +337,7 @@ "uuid": "27e66328-e337-4bcd-ba15-7893ecaf841f", "version": "2018-10-10T03:10:40.801631Z" }, - { + "analysis_file/e0fc82a4-9bc2-4219-b763-99c865e4f9c0": { "content-type": "application/json; dcp-type=data", "crc32c": "25d193cf", "indexed": false, @@ -348,7 +349,7 @@ "uuid": "2ab1a516-ef36-41b6-a78f-513361658feb", "version": "2018-10-10T03:10:40.958708Z" }, - { + "analysis_file/5c3246df-9ee8-42fe-ab19-ddd0ddea3e15": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "bdc30523", "indexed": false, @@ -360,7 +361,7 @@ "uuid": "351970aa-bc4c-405e-a274-be9e08e42e98", "version": "2018-10-10T03:10:41.135992Z" }, - { + "sequence_file/5f0cdf49-aabe-40f4-8af3-033115805bb0": { "content-type": "application/gzip; dcp-type=data", "crc32c": "4ef74578", "indexed": false, @@ -372,7 +373,7 @@ "uuid": "c005f647-b3fb-45a8-857a-8f5e6a878ccf", "version": "2018-10-10T02:38:11.612423Z" }, - { + "sequence_file/74c8c730-139e-40a5-b77e-f46088fa4d95": { "content-type": "application/gzip; dcp-type=data", "crc32c": "69987b3e", "indexed": false, @@ -384,7 +385,7 @@ "uuid": "b764ce7d-3938-4451-b68c-678feebc8f2a", "version": "2018-10-10T02:38:11.851483Z" } - ], + }, "metadata": { "cell_suspension/377f2f5a-4a45-4c62-8fb0-db9ef33f5cf0": { "describedBy": "http://schema.integration.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/79fa91b4-f1fc-534b-a935-b57342804a70.2020-12-10T10:30:00.000000Z.dss.hca.json b/test/indexer/data/79fa91b4-f1fc-534b-a935-b57342804a70.2020-12-10T10:30:00.000000Z.dss.hca.json index 8a70324a6..19b39d251 100644 --- a/test/indexer/data/79fa91b4-f1fc-534b-a935-b57342804a70.2020-12-10T10:30:00.000000Z.dss.hca.json +++ b/test/indexer/data/79fa91b4-f1fc-534b-a935-b57342804a70.2020-12-10T10:30:00.000000Z.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/5be64c5b-766b-43ad-ab5a-467ef1c47cc4": { "name": "CZIKidney7587405_S1_L001_R1_001.fastq.gz", "uuid": "075284e4-6a7b-45ba-a990-112beefd1296", "version": "2019-10-23T14:49:35.991570Z", @@ -13,7 +13,7 @@ "sha256": "3dc835af365d10a8b6f86e9119e513a722551c756e8999fed4085394127c3689", "s3_etag": "880df531d0365e1b06973b93a1d15a5a-119" }, - 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{ + "sequence_file/2b8c990c-4b79-4536-bf5f-1c8e57bff598": { "name": "CZIKidney7632801_S1_L001_R2_001.fastq.gz", "uuid": "0e9affc6-0257-44d8-8e27-3c723b9c8443", "version": "2019-10-23T14:49:42.059197Z", @@ -61,7 +61,7 @@ "sha256": "dfeed362194feb9731fb01ddb194b5d32bef27aa71be1ac96145e99d89321092", "s3_etag": "aaab19ef6c64720286e392b72168b0a0-230" }, - { + "analysis_file/9a41c791-004c-5d89-a10c-d58d2ef7eca3": { "name": "3a20b6a5-6652-4486-86bc-842c7c31c343.loom", "uuid": "0f2bdf51-97c6-5892-b9e7-ad826dbf1321", "version": "2021-02-04T15:37:35.000000Z", @@ -72,7 +72,7 @@ "crc32c": "c3003233", "sha256": "b4c9abbc701054b0b8685c6567566df4f01180dcb83ba6bdb35d250167bb7ca1" }, - { + "sequence_file/70d226a8-01f4-4955-8293-210a6ec78920": { "name": "CZIKidney7632802_S1_L001_R2_001.fastq.gz", "uuid": "0fadf81a-30b4-4e70-ba6f-028950d06ec4", "version": "2019-10-23T14:49:36.081789Z", @@ -85,7 +85,7 @@ "sha256": "f2743a5243764eb59f04f88f673abc500d0a4c5538ae03b2fb81634155eba960", "s3_etag": "afe7816bac5b09b8496366eda4bb52cd-197" }, - { + "sequence_file/599a4315-3b4b-4c42-9d68-961a2396cae5": { "name": "CZIKidney7632803_S1_L001_R2_001.fastq.gz", "uuid": "10e05576-100a-48cc-aa83-a30f09514384", "version": "2019-10-23T14:49:36.882952Z", @@ -98,7 +98,7 @@ "sha256": "c85efb39f331adeb34c937226e6661a4a575259ec6e36e6e3d353d606cdbdfaf", "s3_etag": "dcfb4f63603f7909ea8f5f1b6e8f86e0-212" }, - { + "sequence_file/c8758f13-7e9b-464a-bada-b41b8b9e925f": { "name": "CZIKidney7587408_S1_L001_R2_001.fastq.gz", "uuid": "1456adad-9a4b-4a80-b115-9813f7a6b93c", "version": "2019-10-23T14:49:39.474413Z", @@ -111,7 +111,7 @@ "sha256": "ff538f40e72691b1c6f581d401144cf11b885622428985b216d97c3e43e62ef3", "s3_etag": "fe9271acb1ebea16f8f12e1327310298-31" }, - { + "sequence_file/3de452b4-1c2a-49d6-80c8-495715921447": { "name": "CZIKidney7587404_S1_L001_R2_001.fastq.gz", "uuid": "1841191a-cad6-4bb8-b174-f41d94bee738", "version": "2019-10-23T14:49:36.895477Z", @@ -124,7 +124,7 @@ "sha256": "8bf272444637c809139c82bc65a41e3f33648eaa2cd1ce5e87854e7d6d1009b7", "s3_etag": "939afb3b3e5fb7829889c6a2be427348-31" }, - { + "analysis_file/509608f1-e1d5-561c-b0d6-54348f0adb29": { "name": "51fb7eb7-a422-482e-a98e-c9e6f9628e97.loom", "uuid": "18c7131a-6f18-50a0-a805-04e0f4e2d7aa", "version": "2021-02-04T15:38:21.000000Z", @@ -135,7 +135,7 @@ "crc32c": "30fda154", "sha256": "85c0cc9d33346a374c50580fd00fef3bac6e9da0317deec948c677fc8bd7619c" }, - { + "sequence_file/1eb30a4b-d595-4142-ae68-0a4ff4281c8d": { "name": "FCAImmP7528293_S1_L001_I1_001.fastq.gz", "uuid": "1932be60-8d3d-412b-86ac-4186ea87326b", "version": "2019-10-23T14:49:36.297060Z", @@ -148,7 +148,7 @@ "sha256": "003d74031b80fda82d6a96efa149dd028f1e0d7983283a576eb7cb9e3acc7986", "s3_etag": "728d08481bad39fb75abb4d36471cd06-40" }, - { + "supplementary_file/944589e7-48a4-4333-b773-8e632ccb8865": { "name": "fetal_kidney_collection.pdf", "uuid": "1a04d1fb-55cc-4fd2-810a-71cf26d1aee9", "version": "2019-10-23T14:49:37.778548Z", @@ -161,7 +161,7 @@ "sha256": "8e241b0143084993f50332fec9d85fba8ad09d745fe02b3962af55925099a947", "s3_etag": "cce74f82cc90c9e5059acd326513ae37" }, - 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{ + "supplementary_file/53089129-f71b-412c-ae2d-f7e8e50044c3": { "name": "fetal_flow_enrichment_2.pdf", "uuid": "1e3c935e-a508-47e5-a1a1-da5ad78a4f36", "version": "2019-10-23T14:49:36.963262Z", @@ -211,7 +211,7 @@ "sha256": "573a10fd2924173e82f8a8f3fa0c5fb6c68ca9373f7e2cdfaf39e68086d8204b", "s3_etag": "641a7fe74d0dc149a65b51a1b753e4a9" }, - { + "sequence_file/8f6318ea-e692-4085-a693-02f4ff3204b5": { "name": "CZIKidney7587408_S1_L001_I1_001.fastq.gz", "uuid": "210c7287-2f6e-4a93-8c63-202fa0b596b7", "version": "2019-10-23T14:49:38.876464Z", @@ -224,7 +224,7 @@ "sha256": "51344e0de3761e9d45ca83916b8cc63e1afd3ab28b01ddaff3db9857750fe497", "s3_etag": "57cb25ef7a42dd6da8500a352aeb3023-4" }, - { + "sequence_file/7a058660-f594-4eb5-b02f-bace314f6d76": { "name": "CZIKidney7587406_S1_L001_R1_001.fastq.gz", "uuid": "247b3006-918e-49de-9797-df31ffcfe4ca", "version": "2019-10-23T14:49:35.241234Z", @@ -237,7 +237,7 @@ "sha256": "70549b60bd385959d8eaf74cacc634991f70319535ecb6c320033c1bb355da14", "s3_etag": "514631b815424e2129ddce60de417275-135" }, - { + "sequence_file/9614720d-ed06-4e72-9a4f-cb62088ff608": { "name": "FCAImmP7528293_S1_L001_R2_001.fastq.gz", "uuid": "25f7e8ad-e20e-4b7a-99b5-1f3c5bbfdf18", "version": "2019-10-23T14:49:36.795211Z", @@ -250,7 +250,7 @@ "sha256": "4c4ae28aac14171aef0c080993a4a1d6495c3b0c64a3c127fff574bb62dad43b", "s3_etag": "4d58aa43c6228235a108c5ba906f4cdf-439" }, - { + "sequence_file/e28e68a3-3042-45f6-a714-ba8622a4b34e": { "name": "FCAImmP7555850_S1_L001_R1_001.fastq.gz", "uuid": "29a8f5fb-43a8-4f18-9255-f7573e9c4600", "version": "2019-10-23T14:49:35.155466Z", @@ -263,7 +263,7 @@ "sha256": "2dc0672b9e2c56e0ededbc6b50d609a9eb87dc0776afedc5abeb8b55e317dcd5", "s3_etag": "80923baffe8ef38b23af2ce6d79b788c-131" }, - { + "analysis_file/f9b8be35-2641-5f85-af13-c0390b7bfe23": { "name": "548a75b4-ba45-4700-b7bb-656c3995c316.loom", "uuid": "30e6964e-df3b-5f93-ae18-b49ba08aea26", "version": "2021-02-04T15:30:21.000000Z", @@ -274,7 +274,7 @@ "crc32c": "1303acc0", "sha256": "d9671d190632e21e328f77e3344c240408852ca5a94299daeb504d0472575590" }, - 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{ + "analysis_file/9702f6ba-fd5b-5972-80d4-629e8a8fa8e9": { "name": "90b34757-474f-42c3-9d31-683a5a0a84bd.loom", "uuid": "dc6cba3b-5de7-5405-80ba-ba0d16f9285f", "version": "2021-02-04T15:45:09.000000Z", @@ -1207,7 +1207,7 @@ "crc32c": "fcdfbbf8", "sha256": "05a5076408fe0659856201fe3891e369814bf5281a227a3212a60d077a6bf549" }, - { + "sequence_file/a6a5f2ec-2b8c-4419-82a9-f6bdb80e849c": { "name": "4834STDY7002885_S1_L001_I1_001.fastq.gz", "uuid": "dce25965-6000-496a-b884-fa4dc0491a4d", "version": "2019-10-23T14:49:35.268557Z", @@ -1220,7 +1220,7 @@ "sha256": "1b22fa3c456729a3e28e9a5fa4a35f641989d5e8b21b2d2a93470a1796d5f666", "s3_etag": "c696e743f5309e1759b7961a85176148-80" }, - { + "analysis_file/0115dbfc-99f2-59b4-8430-75cd79e3c04d": { "name": "cc5a78a1-539f-4dec-80b6-62f35dcafd89.bam", "uuid": "dd3dccbb-4bc8-5384-8693-96b82fe5f685", "version": "2021-02-04T15:21:05.000000Z", @@ -1231,7 +1231,7 @@ "crc32c": "3a71013d", "sha256": "0881ac2400044a0ea314313328f07eba6e03a02846d6fe1aef97828894930fcf" }, - { + "analysis_file/32c69d68-1792-53af-9f42-0e97c9afc94b": { "name": "37cad11b-c8c9-4d1f-b715-498b0f8d4b35.loom", "uuid": "df9eea5a-6dea-55bc-9257-35cd9e7c58cc", "version": "2021-02-04T15:49:34.000000Z", @@ -1242,7 +1242,7 @@ "crc32c": "5c0696a6", "sha256": "50640f0ade01cc166a041954bab0ede4c73a672b2afa4db03ea33db05843b475" }, - { + "analysis_file/b666cb1a-1a4f-511f-859e-2779aad16fa0": { "name": "b6dec4a6-2d9b-40ac-80c4-41dce01aea46.loom", "uuid": "dfad809b-a282-5bb4-9d71-0a5bf3da0417", "version": "2021-02-04T15:23:10.000000Z", @@ -1253,7 +1253,7 @@ "crc32c": "26f1f7cf", "sha256": "2ccc35dc18a2c60d6f8de37b940fac88054079dc22ab5ce6b7273b35d43725b4" }, - { + "sequence_file/48cb1c07-fb20-453a-bb98-18dfd9eb4eb8": { "name": "CZIKidney7587404_S1_L001_R1_001.fastq.gz", "uuid": "e5b37a2a-d819-4961-8fa5-f47ce08532a9", "version": "2019-10-23T14:49:36.592775Z", @@ -1266,7 +1266,7 @@ "sha256": "4e655ed6734c394ce00510bde28d3143d250229bb97da3b37665b64cab8fbc0f", "s3_etag": "ba8826d9776d2fd1d5be2d8c2ecfa235-10" }, - { + "sequence_file/ae5068b7-fa8a-46be-8a07-d735093f1aa5": { "name": "4834STDY7002876_S1_L001_R2_001.fastq.gz", "uuid": "e957cc11-3b0d-41ab-9f4e-3bb45688fd8e", "version": "2019-10-23T14:49:36.362500Z", @@ -1279,7 +1279,7 @@ "sha256": "3eae3978778a708e6c82d478a22852349f85a03bcc871eaa9e50b8f15f2d5236", "s3_etag": "32e29d540767b0a2a62349b71bc43db6-724" }, - { + "sequence_file/64c1be0b-56b7-4d5a-b7c8-e8f7f88e0427": { "name": "FCAImmP7579215_S1_L001_R2_001.fastq.gz", "uuid": "ee6f108e-efd4-4eb3-8e51-76fcef37455b", "version": "2019-10-23T14:49:36.093968Z", @@ -1292,7 +1292,7 @@ "sha256": "d912bdc68b99f51cc4e0631fed1853cd5572af6b5465a258e1f932b5649cf10e", "s3_etag": "c7dbb43857d7302cd6ce3d590cfbf211-402" }, - { + "analysis_file/689bcda6-eb41-588a-b4a9-8827e22b1856": { "name": "01f7c3d0-d4be-432d-aa25-8c7fbce20b49.loom", "uuid": "ef880b39-ded0-529f-8b50-44961b8f852e", "version": "2021-02-04T15:35:28.000000Z", @@ -1303,7 +1303,7 @@ "crc32c": "eff7e88e", "sha256": "e1817119fe105c459e7f5ab3f9382e99f505abf4437fc20f6908b5bbb9bee01b" }, - { + "supplementary_file/f1aecf03-b60d-483c-a09f-69223cc1ad0e": { "name": "mature_kidney_dissociation.pdf", "uuid": "eff119a8-5bdb-473d-8479-27b3aa0926bc", "version": "2019-10-23T14:49:35.785263Z", @@ -1316,7 +1316,7 @@ "sha256": "b44f306bc5713eb2321d26493a8ced020178bfc7ea5ce2f96adda17d685c8243", "s3_etag": "3140409968ff3ab6981de2a136276e01" }, - { + "sequence_file/c2137939-c2c6-44d7-8e11-7d6d6d5443eb": { "name": "CZIKidney7632801_S1_L001_I1_001.fastq.gz", "uuid": "f11f27c5-f4b0-4d20-9c8f-d1af764c7c0a", "version": "2019-10-23T14:49:41.497702Z", @@ -1329,7 +1329,7 @@ "sha256": "6cc486a645990e540bbb6abfc2ec4e73552ef04684cb5038fd06ba0490f85945", "s3_etag": "d76cd625f2a396910fc7c3e075696248-23" }, - { + "sequence_file/85849811-ff50-46ec-9245-79140a1ca705": { "name": "FCAImmP7528292_S1_L001_I1_001.fastq.gz", "uuid": "f2f0f2f6-21bb-4672-8cbe-6143c5586b69", "version": "2019-10-23T14:49:35.621545Z", @@ -1342,7 +1342,7 @@ "sha256": "a2c3ee2132af329fcff94ec95906e2a533128b748905adbeaab2e27cd2546685", "s3_etag": "0ff3beba492edeef53ebfa5c74c4aa67-42" }, - { + "sequence_file/fb5fdf8f-f79f-479a-a662-2f3bed88e960": { "name": "CZIKidney7632802_S1_L001_I1_001.fastq.gz", "uuid": "f3b306f2-3627-4fbe-b4d0-9968ee934452", "version": "2019-10-23T14:49:35.514301Z", @@ -1355,7 +1355,7 @@ "sha256": "b98b29bc6efa84b152e9b6c0a741ff13ae722065bf90998cad1a6a11a7cfd5ea", "s3_etag": "0bc0ca931c5966ed61bda3335fe778b2-21" }, - { + "sequence_file/9b53a5c0-fd77-4d55-b697-16a95c67c4c2": { "name": "CZIKidney7587405_S1_L001_R2_001.fastq.gz", "uuid": "f6cf748f-03ac-411c-8e52-d5a5c606e673", "version": "2019-10-23T14:49:36.222729Z", @@ -1368,7 +1368,7 @@ "sha256": "cb55a549053c171a2a2077c565d004db5363d8ef9d35c18b06ed88f21a545bcc", "s3_etag": "887ed419642b5e1fa98a7b0f71f981a2-393" }, - { + "analysis_file/c60bf214-0340-53c0-b75b-af84a82808d6": { "name": "sc-atlas-human-kidney-10XV2.loom", "uuid": "fbdede77-a96e-5480-a4e5-2e20275fc0e8", "version": "2021-02-11T23:24:52.000000Z", @@ -1379,7 +1379,7 @@ "crc32c": "60aaad4d", "sha256": "75e27f6ce8b8f4e89470b34dc048736a19024c92c6dc6754f503313a19e77c55" }, - { + "sequence_file/6c002a62-76b3-4578-8afd-c88cfd62a682": { "name": "FCAImmP7555850_S1_L001_R2_001.fastq.gz", "uuid": "fd1a13ab-4a77-4f7c-964b-7e07722581c1", "version": "2019-10-23T14:49:35.471867Z", @@ -1392,7 +1392,7 @@ "sha256": "83b78d4ba19c8f05ec3df72c07917f39e085f0c89fe8e0c4fe525232b570b74b", "s3_etag": "b73882d8f872a34c5b7da5998f4a7b77-450" }, - { + "sequence_file/c30f45e7-0575-46c3-8ea2-3ac864b439e9": { "name": "4834STDY7002876_S1_L001_I1_001.fastq.gz", "uuid": "fe320cac-6005-46ab-a023-1c7157f5d426", "version": "2019-10-23T14:49:35.793282Z", @@ -1405,7 +1405,7 @@ "sha256": "521ce4b0c4935b9d9a46da29d6e4fa2d12e706f604eb5bbdc95f487ac524e237", "s3_etag": "971ebef0e94981f7010f76c1ff19cc37-80" }, - { + "sequence_file/9abf31bf-fc25-4e44-ae99-0af17e017b95": { "name": "FCAImmP7555849_S1_L001_I1_001.fastq.gz", "uuid": "fe86eb27-196d-48be-a58b-840d7add69ec", "version": "2019-10-23T14:49:34.767268Z", @@ -1418,7 +1418,7 @@ "sha256": "71ffd33e410acc064a0d2647a876900d34e38a534e97c0c5e20740d793dc5e41", "s3_etag": "c643eed963e793c1aca9d12aed65f3a5-39" }, - { + "sequence_file/a04c3838-8a5f-44c7-9b72-1c31c7a6c547": { "name": "CZIKidney7587405_S1_L001_I1_001.fastq.gz", "uuid": "feb85664-ff85-4b95-9198-036360f87cc9", "version": "2019-10-23T14:49:35.688269Z", @@ -1431,7 +1431,7 @@ "sha256": "02f7f2ae215918e69a94a1781d10d0241fac16c89330625016413c6cd11eed05", "s3_etag": "c4eb10a17c32fc4d5e9785024c8cad31-42" }, - { + "sequence_file/121b6c9b-3b12-4fb8-8d98-fba4f1005770": { "name": "FCAImmP7579215_S1_L001_R1_001.fastq.gz", "uuid": "fede9b23-84cc-4d8e-97e3-9bd3fa3f4b19", "version": "2019-10-23T14:49:35.820178Z", @@ -1444,7 +1444,7 @@ "sha256": "65ff3db073e42c2c3cec9c74f91f37c2d4e6bdba73878e884f96272b6d9ec5db", "s3_etag": "0c3394426d4dd0e3b4bb5c43bbf953a0-119" }, - { + "sequence_file/16a9712a-0a62-4f57-a57f-189992e6070b": { "name": "FCAImmP7555849_S1_L001_R1_001.fastq.gz", "uuid": "ff6b12b6-7733-476d-a081-32904abff547", "version": "2019-10-23T14:49:35.077705Z", @@ -1457,7 +1457,7 @@ "sha256": "663fcf54cbe999ebf26ab423d2c91c20634b6bf01b235869c866c6332465572f", "s3_etag": "be5e5229fd92fb22e34133c921cdb708-123" }, - { + "sequence_file/4bf5245d-0168-48b5-83b8-c6aabdcf1a46": { "name": "4834STDY7002881_S1_L001_I1_001.fastq.gz", "uuid": "ffa809d2-47c7-45c6-b221-7c9d2478caa6", "version": "2019-10-23T14:49:35.543273Z", @@ -1470,7 +1470,7 @@ "sha256": "9becc65f81c3b5d208734b337b992903c5b948e189542526e299fefa4795a0e9", "s3_etag": "5b34bc4865ec441768acfea58db18a0d-82" }, - { + "sequence_file/354517f9-c515-401a-a490-9917dea7d3f2": { "name": "CZIKidney7632802_S1_L001_R1_001.fastq.gz", "uuid": "ffac7235-fb12-4e0d-ac86-c608d45f43c3", "version": "2019-10-23T14:49:35.852293Z", @@ -1483,7 +1483,7 @@ "sha256": "c59ba00945e3197c2a19f76175d9eac1010df41ca08afc3342133daee1aee320", "s3_etag": "0613aa5824e81feca4684769d22f3a05-59" } - ], + }, "metadata": { "analysis_file/0115dbfc-99f2-59b4-8430-75cd79e3c04d": { "describedBy": "https://schema.humancellatlas.org/type/file/6.2.0/analysis_file", diff --git a/test/indexer/data/7a330531-ec7f-5aee-84d4-2ba24d66e93b.dss.hca.json b/test/indexer/data/7a330531-ec7f-5aee-84d4-2ba24d66e93b.dss.hca.json index 9dfd6045e..d77b01882 100644 --- a/test/indexer/data/7a330531-ec7f-5aee-84d4-2ba24d66e93b.dss.hca.json +++ b/test/indexer/data/7a330531-ec7f-5aee-84d4-2ba24d66e93b.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/caf6d2a8-2272-5689-b3d8-9c97370d6c29": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "4383f7cb", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "0ba8d3b7-c002-5124-a35b-edd9badd198a", "version": "2021-01-01T00:00:00.000000Z" } - ], + }, "metadata": { "project/90bf705c-d891-5ce2-aa54-094488b445c6": { "array_express_accessions": [ diff --git a/test/indexer/data/7eb74d9f-8346-5420-b7e4-b486f99451a8.dss.hca.json b/test/indexer/data/7eb74d9f-8346-5420-b7e4-b486f99451a8.dss.hca.json index 442cae10b..2f69465e1 100644 --- a/test/indexer/data/7eb74d9f-8346-5420-b7e4-b486f99451a8.dss.hca.json +++ b/test/indexer/data/7eb74d9f-8346-5420-b7e4-b486f99451a8.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/30040306-be5c-48f9-b221-e666e279ab5b": { "name": "Retina_Wong_scRNA_Sample4_I1.fastq.gz", "uuid": "1985c53a-b78f-4d9e-9563-dffed8207efd", "version": "2019-09-13T09:16:23.710869Z", @@ -13,7 +13,7 @@ "sha256": "fbb183a7608f5c4b98e0d9a2f4f77b843d24dcd727f0d5e4ea8111de7d9b22b2", "s3_etag": "f393918b58d786a89c467455152aa66e-17" }, - { + "sequence_file/9f8f5212-0749-460b-9a46-2949dea45d52": { "name": "Retina_Wong_scRNA_Sample4_R2.fastq.gz", "uuid": "5140b603-8cc1-4566-9043-e68145efbbd6", "version": "2019-09-13T09:16:24.192766Z", @@ -26,7 +26,7 @@ "sha256": "76f22d617806fffc64137ef2449e1e827a6d889c0b8e6fc0e38274f68c9f556d", "s3_etag": "012e21be88b6293dfc864c018f67ccf5-147" }, - { + "analysis_file/d90280cc-a294-57de-b350-5234a5278c19": { "name": "1116b396-448e-4dd1-b9c9-78357c511e15.loom", "uuid": "5a11ed4f-41d1-53b4-9e62-3c0bbd04b4b0", "version": "2021-02-03T21:08:31.000000Z", @@ -37,7 +37,7 @@ "crc32c": "9d1f0a8c", "sha256": "733a4a7db49e1ef08a7f5631f3e658f49233c1d468d6d3da0a3f7c02621fab27" }, - { + "analysis_file/b949e4b6-c3fb-58b4-865b-40cb3ef2b6c6": { "name": "1116b396-448e-4dd1-b9c9-78357c511e15.bam", "uuid": "640e64f1-6ada-5d12-a772-fe4ed4eeecea", "version": "2021-02-03T20:52:27.000000Z", @@ -48,7 +48,7 @@ "crc32c": "2ad80e5f", "sha256": "45e831be417a5bbf75b7d0a0a1a024ac9d9f22971115fd56f5b0e5b346e87a71" }, - { + "sequence_file/39255288-6791-45b0-ac7e-b3ef4c981a3b": { "name": "Retina_Wong_scRNA_Sample4_R1.fastq.gz", "uuid": "79f589cb-32a2-4ba6-a091-7c5d820d02df", "version": "2019-09-13T09:16:23.982952Z", @@ -61,7 +61,7 @@ "sha256": "bb61a115aed93057cbd1dc8fb08e68ed5615cc8dc926a9b3336ea0ad58eef648", "s3_etag": "be870140031523af537bbb3861fff77e-44" } - ], + }, "metadata": { "analysis_protocol/289ec28b-ce11-5be8-89ab-92fbceb874a0": { "computational_method": "Optimus", diff --git a/test/indexer/data/80baee6e-00a5-4fdc-bfe3-d339ff8a7178.dss.hca.json b/test/indexer/data/80baee6e-00a5-4fdc-bfe3-d339ff8a7178.dss.hca.json index a236da3ca..2f6db1b09 100644 --- a/test/indexer/data/80baee6e-00a5-4fdc-bfe3-d339ff8a7178.dss.hca.json +++ b/test/indexer/data/80baee6e-00a5-4fdc-bfe3-d339ff8a7178.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/64f1a275-671c-46a2-ba7f-6647e672c8d7": { "name": "SRR3937937_R1.fastq.gz", "uuid": "0880fed3-ede3-4761-8555-8c159c3e800e", "version": "2021-03-12T22:38:42.790000Z", @@ -13,7 +13,7 @@ "sha256": "3eb49debed92777e57fa5a5a20192d8ca99942695b1073f294921e0379dd58fb", "s3_etag": "b408cb0c380283bb235a824a8011de87-2" }, - { + "sequence_file/e27de859-4b05-43d6-8437-7f7dfc0507d1": { "name": "SRR3937937_R2.fastq.gz", "uuid": "8027bd7f-a3bb-4a75-97e9-1a385a158f96", "version": "2021-03-12T22:38:42.802000Z", @@ -26,7 +26,7 @@ "sha256": "931213e2e283ffc8272c5d51dc647040131767a495bf2412aaa8acb0e876facf", "s3_etag": "4a55ee383287a1b4f0aa4e756178c73f-2" } - ], + }, "metadata": { "sequencing_protocol/58612e7a-c83a-4c7d-ab53-974b207291eb": { "describedBy": "https://schema.humancellatlas.org/type/protocol/sequencing/10.1.0/sequencing_protocol", diff --git a/test/indexer/data/8338b891-f3fa-5e7b-885f-e4ee5689ee15.dss.hca.json b/test/indexer/data/8338b891-f3fa-5e7b-885f-e4ee5689ee15.dss.hca.json index c71a6074d..cebdf45be 100644 --- a/test/indexer/data/8338b891-f3fa-5e7b-885f-e4ee5689ee15.dss.hca.json +++ b/test/indexer/data/8338b891-f3fa-5e7b-885f-e4ee5689ee15.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "supplementary_file/538faa28-3235-5e4b-a998-5672e2d964e8": { "name": "8185730f-4113-40d3-9cc3-929271784c2b.homo_sapiens.csv.zip", "uuid": "538faa28-3235-5e4b-a998-5672e2d964e8", "version": "2020-12-03T10:39:17.144517Z", @@ -11,7 +11,7 @@ "crc32c": "97a7a932", "sha256": "edb8e0139fece9702d89ae5fe7f761c41c291ef6a71129c6420857e025228a24" }, - { + "supplementary_file/6c142250-567c-5b63-bd4f-0d78499863f8": { "name": "8185730f-4113-40d3-9cc3-929271784c2b.homo_sapiens.mtx.zip", "uuid": "6c142250-567c-5b63-bd4f-0d78499863f8", "version": "2020-12-03T10:39:17.144517Z", @@ -22,7 +22,7 @@ "crc32c": "7de6e00e", "sha256": "cb1467f4d23a2429b4928943b51652b32edb949099250d28cf400d13074f5440" }, - { + "supplementary_file/8d2ba1c1-bc9f-5c2a-a74d-fe5e09bdfb18": { "name": "8185730f-4113-40d3-9cc3-929271784c2b.homo_sapiens.loom", "uuid": "8d2ba1c1-bc9f-5c2a-a74d-fe5e09bdfb18", "version": "2020-12-03T10:39:17.144517Z", @@ -33,7 +33,7 @@ "crc32c": "d675b7ea", "sha256": "724b2c0ddf33c662b362179bc6ca90cd866b99b340d061463c35d27cfd5a23c5" } - ], + }, "metadata": { "supplementary_file/538faa28-3235-5e4b-a998-5672e2d964e8": { "describedBy": "https://schema.humancellatlas.org/type/file/2.2.0/supplementary_file", diff --git a/test/indexer/data/8543d32f-4c01-48d5-a79f-1c5439659da3.dss.hca.json b/test/indexer/data/8543d32f-4c01-48d5-a79f-1c5439659da3.dss.hca.json index ca1ff626e..61894ccc1 100644 --- a/test/indexer/data/8543d32f-4c01-48d5-a79f-1c5439659da3.dss.hca.json +++ b/test/indexer/data/8543d32f-4c01-48d5-a79f-1c5439659da3.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/f599ea3f-14bb-4504-82ce-d9c1f26e55fa": { "sha1": "1a8474913153e6a7c16dd763d1699f89a4f7bbd4", "name": "21935_7#154_2.fastq.gz", "uuid": "f599ea3f-14bb-4504-82ce-d9c1f26e55fa", @@ -12,7 +12,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 27752653 }, - { + "sequence_file/b2cd6fb7-6612-4ab9-a1c5-e475663437e3": { "sha1": "e9b11d1080f64f20b9bc6363c0efcef45d535dfc", "name": "21935_7#154_1.fastq.gz", "uuid": "b2cd6fb7-6612-4ab9-a1c5-e475663437e3", @@ -24,7 +24,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 27436668 } - ], + }, "metadata": { "project/93f6a42f-1790-4af4-b5d1-8c436cb6feae": { "content": { diff --git a/test/indexer/data/8c1773c3-1885-545f-9381-0dab1edf6074.dss.hca.json b/test/indexer/data/8c1773c3-1885-545f-9381-0dab1edf6074.dss.hca.json index 3645044d6..bb86b5ce8 100644 --- a/test/indexer/data/8c1773c3-1885-545f-9381-0dab1edf6074.dss.hca.json +++ b/test/indexer/data/8c1773c3-1885-545f-9381-0dab1edf6074.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/31786d8d-d046-58d1-b7b4-49bc1114a0f8": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "50660f48", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "92855c6f-2807-50b6-a2a4-19b13c71aa65", "version": "2021-01-01T00:00:00.000000Z" }, - { + "sequence_file/6a0e071d-9bfc-5e12-b1b9-e887885e12f6": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "50660f48", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "c2fe321a-487d-5e53-83d3-766aad105c4f", "version": "2021-01-01T00:00:00.000000Z" }, - { + "sequence_file/f6abda5c-65f3-5015-8167-ae78b96f5693": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "50660f48", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "b613022f-86b4-50ab-9ca2-7dfe2bc27bef", "version": "2021-01-01T00:00:00.000000Z" } - ], + }, "metadata": { "project/90bf705c-d891-5ce2-aa54-094488b445c6": { "array_express_accessions": [ diff --git a/test/indexer/data/8c90d4fe-9a5d-4e3d-ada2-0414b666b880.dss.hca.json b/test/indexer/data/8c90d4fe-9a5d-4e3d-ada2-0414b666b880.dss.hca.json index e19b32521..aeb34aee4 100644 --- a/test/indexer/data/8c90d4fe-9a5d-4e3d-ada2-0414b666b880.dss.hca.json +++ b/test/indexer/data/8c90d4fe-9a5d-4e3d-ada2-0414b666b880.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/c0a69095-57ba-4eca-8cc7-fed514f35f43": { + "name": "read-RA_si-AACCGTAA_lane-001-chunk-001_R1.fastq.gz", "uuid": "f4146a80-2737-4299-8d9a-0ec685dbac8b", "version": "2019-10-14T19:54:58.812291Z", @@ -12,7 +13,7 @@ "sha256": "5261bd1b3a167ade4437b6498d621084765cf1286ee4c7d552642dbc620c4ebd", "s3_etag": "bd2a388d7c4304bf2e5da23c7768e884-29" }, - { + "sequence_file/4a9b689f-5aad-4c30-b347-7b0d52ab3ecb": { "name": "read-RA_si-AACCGTAA_lane-001-chunk-001_R2.fastq.gz", "uuid": "1bd7afa9-cd85-43c7-8515-b5206c0ca07c", "version": "2019-10-14T19:54:58.953689Z", @@ -24,7 +25,7 @@ "sha256": "750c53478433c024f3fa34daa756b3c0df762374c61a1165ad35ac2b6e1711be", "s3_etag": "1f0b116b90f2e0f4b5b3238a315af27c-75" }, - { + "sequence_file/6fc876bc-5a8a-445c-8b41-77526203973b": { "name": "read-RA_si-AACCGTAA_lane-002-chunk-001_R1.fastq.gz", "uuid": "2893f2c5-d60f-41e4-9d18-984bda31e52f", "version": "2019-10-14T19:54:59.157141Z", @@ -36,7 +37,7 @@ "sha256": "67aac81aae3376f6a7ac0208360a196121df8573a168c7b33eb797b6a43f136a", "s3_etag": "2de9f20694ce5b5ec45a0b6c95b959c5-29" }, - { + "sequence_file/d47c381f-cef0-432a-b2bb-49fb7a546ac1": { "name": "read-RA_si-AACCGTAA_lane-002-chunk-001_R2.fastq.gz", "uuid": "e0df1fab-7759-45df-ba8c-6d667be196c6", "version": "2019-10-14T19:54:59.329884Z", @@ -48,7 +49,7 @@ "sha256": "4c77631efaa109685e125a1ae1d71d987635847e8ffc3793c3415fbae7f9bad8", "s3_etag": "9ac6946c54a589788f70b7ebe9804e4a-74" }, - { + "sequence_file/b2a466dd-9de4-428c-9eda-f779d9ad672f": { "name": "read-RA_si-CTAAACGG_lane-001-chunk-001_R1.fastq.gz", "uuid": "2f66adc7-7d45-4c62-95e2-43ed081fa298", "version": "2019-10-14T19:54:59.562610Z", @@ -60,7 +61,7 @@ "sha256": "323b5235309ba7a7f6f5878f7b443fe3f29549b911ce4fcedd0623baa40fa19a", "s3_etag": "51b046396b8ac6fc469e9d9f78da9a9b-25" }, - { + "sequence_file/86102761-0ba7-43b6-a442-666db1296154": { "name": "read-RA_si-CTAAACGG_lane-001-chunk-001_R2.fastq.gz", "uuid": "69f63ebc-0803-41e1-8d78-7bb7449a88c3", "version": "2019-10-14T19:54:59.734557Z", @@ -72,7 +73,7 @@ "sha256": "881dfc80d43c2bc607a423e79ac03d0bf81929d09daabd72eec942633035e9d5", "s3_etag": "b1f0da6f62bfbeb49d48de0629207d98-62" }, - { + "sequence_file/0c4b6682-12ab-46e7-9756-07ec104b14b1": { "name": "read-RA_si-CTAAACGG_lane-002-chunk-001_R1.fastq.gz", "uuid": "cb6ad465-c82e-4c8c-a01a-e2d450b05605", "version": "2019-10-14T19:54:59.934447Z", @@ -84,7 +85,7 @@ "sha256": "cdd9dd55d2eb3e374ddf8b6b1b4ed788b0a5b6302f24d22993c5fe39aaf6dcd4", "s3_etag": "fdfb938eda2889cc2dba13cb1bc5eb0e-24" }, - { + "sequence_file/f31358bc-064c-4185-ae23-af044804d591": { "name": "read-RA_si-CTAAACGG_lane-002-chunk-001_R2.fastq.gz", "uuid": "3f9f744e-dfeb-49ad-9b6b-5bdc7711542b", "version": "2019-10-14T19:55:00.076677Z", @@ -96,7 +97,7 @@ "sha256": "caf5bc60ab523e81944766b35003eab729584a3cb6558ce36028832638e780c6", "s3_etag": "c256670cbd093841ef68fc191603cca5-62" }, - { + "sequence_file/a652744c-2d55-4181-b903-db411fa589b4": { "name": "read-RA_si-GGTTTACT_lane-001-chunk-001_R1.fastq.gz", "uuid": "02746e63-2bf3-48c4-99a9-203ae82e317f", "version": "2019-10-14T19:55:00.305520Z", @@ -108,7 +109,7 @@ "sha256": "c7c049ad79407eaf39e70b7f70d3d7928cfc46199505df68267f23e66bd4387b", "s3_etag": "0c83eb53833b9493c4412f780ac3b9f3-24" }, - { + "sequence_file/da3b3aa5-3bea-441b-b1d0-022f842ddda6": { "name": "read-RA_si-GGTTTACT_lane-001-chunk-001_R2.fastq.gz", "uuid": "a01cfd2b-ae29-47c5-9dac-42b7faf6bedf", "version": "2019-10-14T19:55:00.441246Z", @@ -120,7 +121,7 @@ "sha256": "7c33f8ae017cf35350dd29d51b7e7a0c8e80912384d600c09d947bcace1b5da1", "s3_etag": "5b8c3b3aec8ba9e8ffd70eee13b9faad-62" }, - { + "sequence_file/96ae6850-32c6-4d89-87cb-2f5005ac65aa": { "name": "read-RA_si-GGTTTACT_lane-002-chunk-001_R1.fastq.gz", "uuid": "9989c2fc-2220-498c-8063-a8e93f1ad563", "version": "2019-10-14T19:55:00.608106Z", @@ -132,7 +133,7 @@ "sha256": "0610035966a6671301225d50487926ec1ecd1547fff79d09f3f68926ac9dbbef", "s3_etag": "26a31d9e604a325fde07aa092c19409b-24" }, - { + "sequence_file/bb4b0758-444b-48c3-89a6-9ddcf61fe912": { "name": "read-RA_si-GGTTTACT_lane-002-chunk-001_R2.fastq.gz", "uuid": "b45a9d83-d09e-4177-8714-b495463d4596", "version": "2019-10-14T19:55:00.749690Z", @@ -144,7 +145,7 @@ "sha256": "2166a03cadbf5bcf30e0af9774a6704cc6f877f41376f46db080c74a6ec85620", "s3_etag": "bdfc6c92408fb7f0aff3db503fa57a6d-62" }, - { + "sequence_file/b4308ad2-8a51-4b1e-95a3-da961a13dd70": { "name": "read-RA_si-TCGGCGTC_lane-001-chunk-001_R1.fastq.gz", "uuid": "1f6f344d-734d-47dd-8c0e-4a566aece198", "version": "2019-10-14T19:55:04.648167Z", @@ -156,7 +157,7 @@ "sha256": "59b6e856c804408156af825d8e9548b9e63117dd0f26112e376fb94dd13bea64", "s3_etag": "3c77c9680081c13bccfca980583aed2f-38" }, - { + "sequence_file/2fa236c1-deb5-48a8-9961-3e2ee5cae2db": { "name": "read-RA_si-TCGGCGTC_lane-001-chunk-001_R2.fastq.gz", "uuid": "3423f8f0-b9e2-4f31-941e-d811ebc810df", "version": "2019-10-14T19:55:04.933666Z", @@ -168,7 +169,7 @@ "sha256": "d3aaa198d125b6e98fc99932f74ed7d775ee0a89876536c3b2aed233f4e22a6f", "s3_etag": "8f774af28c90a781fcdffa92e753f033-96" }, - { + "sequence_file/ff664ba7-b1f9-4fd2-b6ae-a12eb0111721": { "name": "read-RA_si-TCGGCGTC_lane-002-chunk-001_R1.fastq.gz", "uuid": "29de4b2c-f375-4d33-8495-98f70d8580e0", "version": "2019-10-14T19:55:05.154353Z", @@ -180,7 +181,7 @@ "sha256": "62550be237ead5b7e073f831963150e6a05218b0a8a52322109858f6646bbf00", "s3_etag": "277ab2eef75bf8b90adca3810557a038-37" }, - { + "sequence_file/899e967e-06c8-49d9-bd3f-4bef8d04e22b": { "name": "read-RA_si-TCGGCGTC_lane-002-chunk-001_R2.fastq.gz", "uuid": "ab7aec45-0a5e-4edb-bc77-748413fd0a36", "version": "2019-10-14T19:55:05.312348Z", @@ -192,7 +193,7 @@ "sha256": "b4ff31a894fb15a28f7d9f0e54a5b8c4b8a6a5c119e1af3a54fb852a253c268f", "s3_etag": "d7fa94b852fb5a9c77c531a9fc8d6954-94" } - ], + }, "metadata": { "cell_suspension/26dd8b99-f4ad-4802-8d6d-cf372c819dcc": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.3.0/cell_suspension", diff --git a/test/indexer/data/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.dss.hca.json b/test/indexer/data/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.dss.hca.json index ed470ffb1..1df521fb9 100644 --- a/test/indexer/data/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.dss.hca.json +++ b/test/indexer/data/94f2ba52-30c8-4de0-a78e-f95a3f8deb9c.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "image_file/6baa3aff-b2a5-4e49-82f7-25c108a6107a": { + "content-type": "application/json; dcp-type=data", "crc32c": "d1fbf93a", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "34d230e7-dd9f-4a47-8d5b-23043fe43bc0", "version": "2019-04-03T10:55:35.336469Z" }, - { + "image_file/06dcfc33-21da-485f-8e50-49d294713a9e": { "content-type": "application/json; dcp-type=data", "crc32c": "88def662", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "3db743f3-8235-4553-9a70-37dee987dd64", "version": "2019-04-03T10:55:35.723353Z" }, - { + "image_file/404dd50b-4bc9-4c82-8c18-f53c68eed2fc": { "content-type": "image/tiff; dcp-type=data", "crc32c": "ad2281ce", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "13ce8b32-13df-411e-8874-810de85a6d51", "version": "2019-04-03T10:55:36.220197Z" }, - { + "image_file/5ceb5dc3-9194-494a-b1df-42bb75ab1a04": { "content-type": "image/tiff; dcp-type=data", "crc32c": "d8b5d806", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "1eb42fec-c278-43a5-b3a3-b68d998b3a2a", "version": "2019-04-03T10:55:36.479486Z" }, - { + "image_file/76e52f76-ede7-4088-b7f6-d6e5f6152292": { "content-type": "image/tiff; dcp-type=data", "crc32c": "3b0cdc15", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "fe9c7709-3a1c-4548-9578-01e4a63cc9d3", "version": "2019-04-03T10:55:36.745978Z" }, - { + "image_file/2e496fe6-f500-4e27-b7f5-3c87fe43bbe5": { "content-type": "image/tiff; dcp-type=data", "crc32c": "d1935fb2", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "508e6ec1-6693-4ffb-aa0c-53940a9b1a30", "version": "2019-04-03T10:55:37.018211Z" }, - { + "image_file/be66141d-84a3-457d-a8d2-2f0da8c91dff": { "content-type": "image/tiff; dcp-type=data", "crc32c": "817e676f", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "9d66777d-7af9-4cf2-bcd7-6d4b0cba8fab", "version": "2019-04-03T10:55:37.249443Z" }, - { + "image_file/680cf532-ef0c-4155-b44d-a6ec3920743a": { "content-type": "image/tiff; dcp-type=data", "crc32c": "b3be7c25", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "50b7b8e6-16fa-4e0c-999a-42cab234b1db", "version": "2019-04-03T10:55:37.599532Z" }, - { + "image_file/08609f14-cf43-4188-b743-4a0b55b17347": { "content-type": "image/tiff; dcp-type=data", "crc32c": "acf4da3b", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "c4be485e-8f30-454c-a641-7d0ff3cafb4a", "version": "2019-04-03T10:55:37.940591Z" }, - { + "image_file/d10827a1-38f7-457d-9c9f-695f2fc7689c": { "content-type": "image/tiff; dcp-type=data", "crc32c": "527eec28", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "23fad5c1-d704-479d-b8cc-a629fee2b340", "version": "2019-04-03T10:55:38.199379Z" }, - { + "image_file/6f8eb2e5-7a0c-4c98-8da0-276457357071": { "content-type": "image/tiff; dcp-type=data", "crc32c": "60e20c9b", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "4a9702b6-04e4-409b-a241-42540df7a07f", "version": "2019-04-03T10:55:38.500545Z" }, - { + "image_file/ca480df3-71bb-4634-8f71-b6a75aeb9f05": { "content-type": "image/tiff; dcp-type=data", "crc32c": "c031ab08", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "bb22c7d2-a22e-4e97-ab75-5bf44d95aa47", "version": "2019-04-03T10:55:38.750403Z" }, - { + "image_file/03ae5f5e-65ac-4491-b0ce-eefc940e0224": { "content-type": "image/tiff; dcp-type=data", "crc32c": "46b7935c", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "3047eca0-886e-4989-a220-c35ee497ed62", "version": "2019-04-03T10:55:38.997194Z" }, - 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{ + "image_file/9d577bd4-3a27-48be-ad7c-8c44cf803cda": { "content-type": "image/tiff; dcp-type=data", "crc32c": "42e96812", "indexed": false, @@ -2472,7 +2473,7 @@ "uuid": "c665c520-397f-4410-abed-1cd9e23fe942", "version": "2019-04-03T10:56:39.905452Z" }, - { + "image_file/c4de7605-fec5-4389-bb9e-f2ea0c41cdef": { "content-type": "image/tiff; dcp-type=data", "crc32c": "b18acdbe", "indexed": false, @@ -2484,7 +2485,7 @@ "uuid": "fdac5e58-f0bb-40b1-9a58-b49f43bc4238", "version": "2019-04-03T10:56:40.178722Z" }, - { + "image_file/21a043b6-6dde-41b9-b20e-74b961da8b88": { "content-type": "image/tiff; dcp-type=data", "crc32c": "af59c8a5", "indexed": false, @@ -2496,7 +2497,7 @@ "uuid": "bf5e1454-492c-4748-811b-b8ef68548d79", "version": "2019-04-03T10:56:40.476175Z" }, - { + "image_file/11280200-1803-4110-aa84-2808776c2d50": { "content-type": "image/tiff; dcp-type=data", "crc32c": "c323197b", "indexed": false, @@ -2508,7 +2509,7 @@ "uuid": "37a2c628-29f7-4845-ace9-62ed637c7c74", "version": "2019-04-03T10:56:40.730992Z" }, - { + "image_file/86df5269-576b-4d18-a0ce-6e2b2a36d51b": { "content-type": "image/tiff; dcp-type=data", "crc32c": "e7e994f8", "indexed": false, @@ -2520,7 +2521,7 @@ "uuid": "1e18aaa0-df92-4bab-81dc-7e225e2c8a09", "version": "2019-04-03T10:56:41.356591Z" }, - { + "image_file/e524ff4e-95fa-4561-bfd3-276cba79e664": { "content-type": "image/tiff; dcp-type=data", "crc32c": "e62e1b96", "indexed": false, @@ -2532,7 +2533,7 @@ "uuid": "682e7e32-5795-4fc3-ad31-5c5f5e737c55", "version": "2019-04-03T10:56:41.597762Z" }, - { + "image_file/3d5737da-b1ab-48cb-a26f-d420e53edccd": { "content-type": "image/tiff; dcp-type=data", "crc32c": "eb94ca22", "indexed": false, @@ -2544,7 +2545,7 @@ "uuid": "3b5bde9d-8af7-4253-9013-61bc6917eac4", "version": "2019-04-03T10:56:42.155558Z" }, - { + "image_file/44cf15ec-3d4e-4698-bb14-107c34891191": { "content-type": "image/tiff; dcp-type=data", "crc32c": "30148627", "indexed": false, @@ -2556,7 +2557,7 @@ "uuid": "e6f193a6-c235-4357-b1c8-bd075e0be111", "version": "2019-04-03T10:56:42.455372Z" }, - { + "image_file/6242cdf3-fd6d-4479-a08a-1747818fd978": { "content-type": "image/tiff; dcp-type=data", "crc32c": "01ece1c6", "indexed": false, @@ -2568,7 +2569,7 @@ "uuid": "33b9e890-93dd-46bf-a464-0b293605ca13", "version": "2019-04-03T10:56:42.695635Z" }, - { + "image_file/bc60bbd4-8b09-425c-b507-9da24a84f412": { "content-type": "image/tiff; dcp-type=data", "crc32c": "3a56f81e", "indexed": false, @@ -2580,7 +2581,7 @@ "uuid": "1a57ba61-0aaa-4a98-8714-44ef51295163", "version": "2019-04-03T10:56:42.933998Z" }, - { + "image_file/1f054ccf-f8dd-4127-a6f8-c577d7dd93dc": { "content-type": "image/tiff; dcp-type=data", "crc32c": "4f573958", "indexed": false, @@ -2592,7 +2593,7 @@ "uuid": "e1a484a8-5557-440d-8196-38a39c8acc3e", "version": "2019-04-03T10:56:43.266340Z" }, - { + "image_file/9954cb4b-b0a4-4479-b31d-0bee1e75d9c7": { "content-type": "image/tiff; dcp-type=data", "crc32c": "5fd73b1d", "indexed": false, @@ -2604,7 +2605,7 @@ "uuid": "4a836a20-3f30-4e33-8374-c9837de94790", "version": "2019-04-03T10:56:43.598363Z" }, - { + "image_file/5f67c32c-a154-4620-8603-0b64979b04a4": { "content-type": "image/tiff; dcp-type=data", "crc32c": "2335b62b", "indexed": false, @@ -2616,7 +2617,7 @@ "uuid": "fa8e2052-2f21-420b-84bb-dee4e2ce79ab", "version": "2019-04-03T10:56:43.915023Z" }, - { + "image_file/7d5bffb2-8bf9-4366-a8b2-762ebb4d6c5d": { "content-type": "image/tiff; dcp-type=data", "crc32c": "61289ac4", "indexed": false, @@ -2628,7 +2629,7 @@ "uuid": "c605b91e-3b62-442d-bd3e-2d58a213a4bf", "version": "2019-04-03T10:56:44.156708Z" }, - { + "image_file/dcee6df0-9e87-4935-8873-f8d30d449d76": { "content-type": "image/tiff; dcp-type=data", "crc32c": "081bc6e9", "indexed": false, @@ -2640,7 +2641,7 @@ "uuid": "d6621482-70a1-42ac-895d-8398aa0bb2b7", "version": "2019-04-03T10:56:44.436640Z" }, - { + "image_file/7d6bdde6-523f-46cb-bed5-d6cfa8fea80c": { "content-type": "image/tiff; dcp-type=data", "crc32c": "b65a523e", "indexed": false, @@ -2652,7 +2653,7 @@ "uuid": "1d051231-9ed8-44fd-8086-93da3a04dd0b", "version": "2019-04-03T10:56:44.954210Z" }, - { + "image_file/e6d00b0c-3641-4ec4-a553-8fd742193dba": { "content-type": "image/tiff; dcp-type=data", "crc32c": "6e9add20", "indexed": false, @@ -2664,7 +2665,7 @@ "uuid": "bba231df-4b9b-44fe-a9e9-df314fc8f75d", "version": "2019-04-03T10:56:45.222571Z" }, - { + "image_file/e5034863-0528-4f55-be95-c8501c29f9fe": { "content-type": "image/tiff; dcp-type=data", "crc32c": "bd266ca9", "indexed": false, @@ -2676,7 +2677,7 @@ "uuid": "6c85c7e1-832c-476c-add9-e2cc509f8de0", "version": "2019-04-03T10:56:45.515825Z" }, - { + "image_file/cc61b14a-59d9-477b-8cb1-43c4ee4cf434": { "content-type": "image/tiff; dcp-type=data", "crc32c": "1285ec2c", "indexed": false, @@ -2688,7 +2689,7 @@ "uuid": "9a71aa79-aa5e-41ca-89ed-2d5eaea98840", "version": "2019-04-03T10:56:45.832519Z" }, - { + "image_file/33d332c9-aefe-4db5-8830-b8daddaed0d2": { "content-type": "image/tiff; dcp-type=data", "crc32c": "ee12e15f", "indexed": false, @@ -2700,7 +2701,7 @@ "uuid": "bec2697f-31b6-4db5-888a-024379f3d13f", "version": "2019-04-03T10:56:46.096587Z" }, - { + "image_file/bb3b6fc7-0902-432d-bad1-6b3f61951314": { "content-type": "application/json; dcp-type=data", "crc32c": "d148a0e3", "indexed": false, @@ -2712,7 +2713,7 @@ "uuid": "194db0d1-dfca-44d7-9ad7-194a9e091d32", "version": "2019-04-03T10:56:46.365296Z" }, - { + "image_file/2b734e88-3a33-4c73-92bb-82e0b8f8c13b": { "content-type": "application/json; dcp-type=data", "crc32c": "3c1c81b7", "indexed": false, @@ -2724,7 +2725,7 @@ "uuid": "57e036f8-063a-47fe-b668-499222390e95", "version": "2019-04-03T10:56:46.657106Z" } - ], + }, "metadata": { "imaged_specimen/87f58f88-ef8b-4323-bd19-cde1a2497b59": { "describedBy": "https://schema.staging.data.humancellatlas.org/type/biomaterial/2.0.7/imaged_specimen", diff --git a/test/indexer/data/97f0cc83-f0ac-417a-8a29-221c77debde8.dss.hca.json b/test/indexer/data/97f0cc83-f0ac-417a-8a29-221c77debde8.dss.hca.json index 1d3ad2d9f..9ed3612b5 100644 --- a/test/indexer/data/97f0cc83-f0ac-417a-8a29-221c77debde8.dss.hca.json +++ b/test/indexer/data/97f0cc83-f0ac-417a-8a29-221c77debde8.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/430755e7-2263-4b5b-ad65-b3231c0eb61d": { + "name": "E8.75_anterior_Rep1_barcodes.fastq.gz", "uuid": "1fdcd06c-ea5b-4e5a-b382-ae42dcfc8aca", "version": "2019-10-14T19:54:43.781599Z", @@ -12,7 +13,7 @@ "sha256": "94d28c18eb39cd1ed4d76c08af4d5bfabb38f2e96705b7c095665202a84b975c", "s3_etag": "469cb924ee6fc974b5cf1e23992c2930-206" }, - { + "sequence_file/d53454df-9542-4c64-9f84-0d798d923777": { "name": "E8.75_anterior_Rep1_genomic.fastq.gz", "uuid": "e8f4a1a6-bd63-49d8-848d-160782b33e4e", "version": "2019-10-14T19:54:43.923029Z", @@ -24,7 +25,7 @@ "sha256": "bec2df465ef1ab7de6e75b403dc8f10a2e524be2ceefc78fd409007c175d558d", "s3_etag": "f82998df8a181bafcef0d156bba05079-771" } - ], + }, "metadata": { "cell_suspension/5ea17576-5f1d-4879-97a1-6a868ccb2b0b": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.3.0/cell_suspension", diff --git a/test/indexer/data/9dec1bd6-ced8-448a-8e45-1fc7846d8995.dss.hca.json b/test/indexer/data/9dec1bd6-ced8-448a-8e45-1fc7846d8995.dss.hca.json index d2e4f1d04..3bc66a996 100644 --- a/test/indexer/data/9dec1bd6-ced8-448a-8e45-1fc7846d8995.dss.hca.json +++ b/test/indexer/data/9dec1bd6-ced8-448a-8e45-1fc7846d8995.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/e080459e-e4ab-40ea-ab75-a2646b5fdd29": { "content-type": "application/gzip; dcp-type=data", "crc32c": "fa399aa2", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "e080459e-e4ab-40ea-ab75-a2646b5fdd29", "version": "2018-03-29T15:43:13.328705Z" }, - { + "sequence_file/3417cdb5-5618-4c0c-bc27-62a4eb78916a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "7453bf7a", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "3417cdb5-5618-4c0c-bc27-62a4eb78916a", "version": "2018-03-29T15:43:14.679074Z" } - ], + }, "metadata": { "project/93f6a42f-1790-4af4-b5d1-8c436cb6feae": { "content": { diff --git a/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-02T11:33:44.698028Z.dss.hca.json b/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-02T11:33:44.698028Z.dss.hca.json index 7006933cf..76806fe5e 100644 --- a/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-02T11:33:44.698028Z.dss.hca.json +++ b/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-02T11:33:44.698028Z.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/70d1af4a-82c8-478a-8960-e9028b3616ca": { + "content-type": "application/gzip; dcp-type=data", "crc32c": "54bb9c82", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "74897eb7-0701-4e4f-9e6b-8b9521b2816b", "version": "2018-11-02T11:33:44.450442Z" }, - { + "sequence_file/0c5ac7c0-817e-40d4-b1b1-34c3d5cfecdb": { "content-type": "application/gzip; dcp-type=data", "crc32c": "1d998e49", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "7b07f99e-4a8a-4ad0-bd4f-db0d7a00c7bb", "version": "2018-11-02T11:33:44.698028Z" } - ], + }, "metadata": { "cell_suspension/412898c5-5b9b-4907-b07c-e9b89666e204": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-04T11:33:44.698028Z.dss.hca.json b/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-04T11:33:44.698028Z.dss.hca.json index 2e84ea6e9..08403796b 100644 --- a/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-04T11:33:44.698028Z.dss.hca.json +++ b/test/indexer/data/aaa96233-bf27-44c7-82df-b4dc15ad4d9d.2018-11-04T11:33:44.698028Z.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/70d1af4a-82c8-478a-8960-e9028b3616ca": { + "content-type": "application/gzip; dcp-type=data", "crc32c": "54bb9c82", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "74897eb7-0701-4e4f-9e6b-8b9521b2816b", "version": "2018-11-04T11:33:44.450442Z" }, - { + "sequence_file/0c5ac7c0-817e-40d4-b1b1-34c3d5cfecdb": { "content-type": "application/gzip; dcp-type=data", "crc32c": "1d998e49", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "7b07f99e-4a8a-4ad0-bd4f-db0d7a00c7bb", "version": "2018-11-04T11:33:44.698028Z" } - ], + }, "metadata": { "cell_suspension/412898c5-5b9b-4907-b07c-e9b89666e204": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/b0850e79-5544-49fe-b54d-e29b9fc3f61f.dss.hca.json b/test/indexer/data/b0850e79-5544-49fe-b54d-e29b9fc3f61f.dss.hca.json index 1e1e8b7a8..1c73018c4 100644 --- a/test/indexer/data/b0850e79-5544-49fe-b54d-e29b9fc3f61f.dss.hca.json +++ b/test/indexer/data/b0850e79-5544-49fe-b54d-e29b9fc3f61f.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/a9f7d170-b971-4444-94ee-477ca3b5ef75": { "sha1": "3fa044b9a5782b378e26025339da0a1fadbf358d", "name": "MantonCB7_HiSeq_8_S24_L005_I1_001.fastq.gz", "uuid": "a9f7d170-b971-4444-94ee-477ca3b5ef75", @@ -12,7 +12,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 419864184 }, - { + "sequence_file/588b80b6-1bac-4e59-a5af-d85d7ea78102": { "sha1": "5934cd5d07d4c6c1e18f299ac66fcd075103a539", "name": "MantonCB6_HiSeq_2_S10_L004_I1_001.fastq.gz", "uuid": "588b80b6-1bac-4e59-a5af-d85d7ea78102", @@ -24,7 +24,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 398067119 }, - { + "sequence_file/e52ead2d-7eb4-4dc3-9eb7-f1e6c3b86c72": { "sha1": "8f7662e2c0f7f129b9b8071b402b4db1e98a4c04", "name": "MantonCB7_HiSeq_5_S21_L006_R2_001.fastq.gz", "uuid": "e52ead2d-7eb4-4dc3-9eb7-f1e6c3b86c72", @@ -36,7 +36,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3935787850 }, - { + "sequence_file/337686df-d6a4-4294-af00-242293302662": { "sha1": "af6e9985f43494a2f4d8a6a45b6cca165a97cffd", "name": "MantonCB8_HiSeq_2_S26_L007_R1_001.fastq.gz", "uuid": "337686df-d6a4-4294-af00-242293302662", @@ -48,7 +48,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1012033735 }, - 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{ + "sequence_file/97aa5b24-7f19-4b99-9473-cf2518cd6f03": { "sha1": "f77d94d1ec6cb31b4606476e2584bde49e5a7d8b", "name": "MantonCB6_HiSeq_8_S16_L003_I1_001.fastq.gz", "uuid": "97aa5b24-7f19-4b99-9473-cf2518cd6f03", @@ -2028,7 +2028,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 368015482 }, - { + "sequence_file/0622a845-6109-4c1a-bf60-aa1d47d23799": { "sha1": "fea03e5db5a01ad49bce8c1a3c2fccaf6caa53e1", "name": "MantonCB7_HiSeq_6_S22_L006_I1_001.fastq.gz", "uuid": "0622a845-6109-4c1a-bf60-aa1d47d23799", @@ -2040,7 +2040,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 394878983 }, - { + "sequence_file/c0b50eb0-f38a-4102-ae11-355adc3a9753": { "sha1": "bad5e5fad157a473c1f955170db4ad8600ab0742", "name": "MantonCB8_HiSeq_7_S31_L007_R1_001.fastq.gz", "uuid": "c0b50eb0-f38a-4102-ae11-355adc3a9753", @@ -2052,7 +2052,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1483676715 }, - { + "sequence_file/325e58bd-5f19-47fd-9231-12d1bbb19fb8": { "sha1": "8ac52e350cdef486a4fb9607c6cd11900696a3c1", "name": "MantonCB8_HiSeq_5_S29_L008_I1_001.fastq.gz", "uuid": "325e58bd-5f19-47fd-9231-12d1bbb19fb8", @@ -2064,7 +2064,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 433544507 }, - { + "sequence_file/f47923b9-561c-444c-8b18-ea8c1d4bf75d": { "sha1": "eb827e78ecb3ccbda2cc11dde4ba162936cd8f21", "name": "MantonCB6_HiSeq_5_S13_L004_R1_001.fastq.gz", "uuid": "f47923b9-561c-444c-8b18-ea8c1d4bf75d", @@ -2076,7 +2076,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1085513025 }, - { + "sequence_file/da470794-0fc6-453d-a166-fc8c3bf9ce8c": { "sha1": "44c4183acdadddd6605fa0ff51e2e25ec0d68637", "name": "MantonCB7_HiSeq_8_S24_L006_I1_001.fastq.gz", "uuid": "da470794-0fc6-453d-a166-fc8c3bf9ce8c", @@ -2088,7 +2088,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 434876041 }, - { + "sequence_file/16a57933-11e5-4852-93a0-805e0433b2dd": { "sha1": "868b3a2392e7b83bd5b21cf6d11428c449906d71", "name": "MantonCB7_HiSeq_7_S23_L006_R2_001.fastq.gz", "uuid": "16a57933-11e5-4852-93a0-805e0433b2dd", @@ -2100,7 +2100,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3698396558 }, - { + "sequence_file/b877aa35-fc46-40b9-8869-bd717f9465db": { "sha1": "168cdc8c800b96c58d68b03f86743e785caf1607", "name": "MantonCB5_HiSeq_7_S7_L001_I1_001.fastq.gz", "uuid": "b877aa35-fc46-40b9-8869-bd717f9465db", @@ -2112,7 +2112,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 448353650 }, - { + "sequence_file/c8702058-1e5c-48e9-a1ac-d296478e7218": { "sha1": "6314b21d3df6749209afbf594fd179d774b54d61", "name": "MantonCB5_HiSeq_5_S5_L002_R2_001.fastq.gz", "uuid": "c8702058-1e5c-48e9-a1ac-d296478e7218", @@ -2124,7 +2124,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3620639601 }, - { + "sequence_file/21e743eb-f83e-428b-96af-8d6182610e0a": { "sha1": "6f4ee0df88d6fa6151e51bb6151b09715d14d0eb", "name": "MantonCB8_HiSeq_6_S30_L007_I1_001.fastq.gz", "uuid": "21e743eb-f83e-428b-96af-8d6182610e0a", @@ -2136,7 +2136,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 489739577 }, - { + "sequence_file/edfc2355-865b-4b05-8bd5-816907acca07": { "sha1": "397eae317406d469f6ceab4892483e1d3bfa0fd0", "name": "MantonCB6_HiSeq_2_S10_L003_I1_001.fastq.gz", "uuid": "edfc2355-865b-4b05-8bd5-816907acca07", @@ -2148,7 +2148,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 382329217 }, - { + "sequence_file/481d7c49-8b4a-42ca-b4fd-021cf71cbc15": { "sha1": "3809ef7691e06bcb3e4d89b1e2fa0c53c7c61039", "name": "MantonCB6_HiSeq_1_S9_L004_I1_001.fastq.gz", "uuid": "481d7c49-8b4a-42ca-b4fd-021cf71cbc15", @@ -2160,7 +2160,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 392615055 }, - { + "sequence_file/72057d86-405e-461a-af7f-344ae067bff7": { "sha1": "2b050c76806097a59ef46a94a3d1284bb3574ea5", "name": "MantonCB5_HiSeq_1_S1_L002_R2_001.fastq.gz", "uuid": "72057d86-405e-461a-af7f-344ae067bff7", @@ -2172,7 +2172,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3294450182 }, - { + "sequence_file/e310f0db-3e59-4339-8fc0-6322ba946dd9": { "sha1": "170eceb6a17321f5b8f9dc7fa9187b4acfe1b711", "name": "MantonCB6_HiSeq_6_S14_L004_I1_001.fastq.gz", "uuid": "e310f0db-3e59-4339-8fc0-6322ba946dd9", @@ -2184,7 +2184,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 356717763 }, - { + "sequence_file/00df0394-0487-4144-9c35-39d741045981": { "sha1": "f7fe2d34bbb1bff368184f335af631d55a4228b9", "name": "MantonCB8_HiSeq_1_S25_L008_I1_001.fastq.gz", "uuid": "00df0394-0487-4144-9c35-39d741045981", @@ -2196,7 +2196,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 336182046 }, - { + "sequence_file/54bf0b5a-eac1-40eb-8507-162234918804": { "sha1": "acffb40a90075c4e1fc3d2d9ee1c5ab649c8b6b0", "name": "MantonCB6_HiSeq_4_S12_L003_R2_001.fastq.gz", "uuid": "54bf0b5a-eac1-40eb-8507-162234918804", @@ -2208,7 +2208,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3649999977 }, - { + "sequence_file/e6d7ead7-8e3c-437d-9d4d-f46bedf11c22": { "sha1": "05ce7be6f8a74c9c9a41741f8b82aefe1c01d050", "name": "MantonCB6_HiSeq_3_S11_L004_I1_001.fastq.gz", "uuid": "e6d7ead7-8e3c-437d-9d4d-f46bedf11c22", @@ -2220,7 +2220,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 365363881 }, - { + "sequence_file/9888d80c-aee4-4e18-b8e9-582e064a168c": { "sha1": "683e1c10358ab903e58de4b72ef38ead92170f29", "name": "MantonCB8_HiSeq_3_S27_L008_I1_001.fastq.gz", "uuid": "9888d80c-aee4-4e18-b8e9-582e064a168c", @@ -2232,7 +2232,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 357693500 }, - { + "sequence_file/6f2e3c9b-3393-455f-8b8d-5551bc5e2f44": { "sha1": "40d093d244347edd609761d69911cd196cd0fd34", "name": "MantonCB6_HiSeq_1_S9_L004_R1_001.fastq.gz", "uuid": "6f2e3c9b-3393-455f-8b8d-5551bc5e2f44", @@ -2244,7 +2244,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1221169065 }, - { + "sequence_file/467e06e0-34e5-42bc-b647-72402e919357": { "sha1": "c9f6e70030ef76ae88556cc899b874be7b2f810a", "name": "MantonCB5_HiSeq_8_S8_L002_I1_001.fastq.gz", "uuid": "467e06e0-34e5-42bc-b647-72402e919357", @@ -2256,7 +2256,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 411358196 }, - { + "sequence_file/4c0876d7-220f-47cc-841c-7269bc24c014": { "sha1": "9cdc919bd9a16b562858537fd4aa1fee95b94691", "name": "MantonCB5_HiSeq_3_S3_L002_R1_001.fastq.gz", "uuid": "4c0876d7-220f-47cc-841c-7269bc24c014", @@ -2268,7 +2268,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1246570312 }, - { + "sequence_file/10268a25-2d4a-48e3-a322-08c1b7988375": { "sha1": "6d8c2f269dd57a2ca8466d5b0706177cebbcf89b", "name": "MantonCB7_HiSeq_4_S20_L006_I1_001.fastq.gz", "uuid": "10268a25-2d4a-48e3-a322-08c1b7988375", @@ -2280,7 +2280,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 394889210 }, - { + "sequence_file/ec749311-5dd2-4cd6-a2fc-8f072d614bb5": { "sha1": "1741dab472015a7f0d147ec411d1b0a151c5f27b", "name": "MantonCB8_HiSeq_7_S31_L008_R1_001.fastq.gz", "uuid": "ec749311-5dd2-4cd6-a2fc-8f072d614bb5", @@ -2292,7 +2292,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1480451838 }, - { + "sequence_file/a8d5b273-9a5f-4071-97be-305fc4bbbe6c": { "sha1": "480c2243a03f6632ee7eafa34ca6110deb781596", "name": "MantonCB7_HiSeq_7_S23_L005_R1_001.fastq.gz", "uuid": "a8d5b273-9a5f-4071-97be-305fc4bbbe6c", @@ -2304,7 +2304,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1247243321 } - ], + }, "metadata": { "project/6504d48c-1610-43aa-8cf8-214a960e110c": { "content": { diff --git a/test/indexer/data/b2216048-7eaa-45f4-8077-5a3fb4204953.dss.hca.json b/test/indexer/data/b2216048-7eaa-45f4-8077-5a3fb4204953.dss.hca.json index ba9375653..00eb291e7 100644 --- a/test/indexer/data/b2216048-7eaa-45f4-8077-5a3fb4204953.dss.hca.json +++ b/test/indexer/data/b2216048-7eaa-45f4-8077-5a3fb4204953.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/aa662c76-d220-49f4-8316-f4af5820d60b": { "sha1": "284b9be625b43327f353fd3d77b6aa5b4d32e69c", "name": "22011_1#268_2.fastq.gz", "uuid": "aa662c76-d220-49f4-8316-f4af5820d60b", @@ -12,7 +12,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 88782381 }, - { + "sequence_file/d2f32681-9c1a-4dfd-b506-c24327afb8d1": { "sha1": "beeb73e062974cd9f37fc09822fea4fec2ceb609", "name": "22011_1#268_1.fastq.gz", "uuid": "d2f32681-9c1a-4dfd-b506-c24327afb8d1", @@ -24,7 +24,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 74420452 } - ], + }, "metadata": { "project/93f6a42f-1790-4af4-b5d1-8c436cb6feae": { "content": { diff --git a/test/indexer/data/b7fc737e-9b7b-4800-8977-fe7c94e131df.dss.hca.json b/test/indexer/data/b7fc737e-9b7b-4800-8977-fe7c94e131df.dss.hca.json index 2291d9783..b1a62674f 100644 --- a/test/indexer/data/b7fc737e-9b7b-4800-8977-fe7c94e131df.dss.hca.json +++ b/test/indexer/data/b7fc737e-9b7b-4800-8977-fe7c94e131df.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/211d3f25-1253-4a01-aadf-08b6452de585": { + "content-type": "application/gzip; dcp-type=data", "crc32c": "13312585", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "701c9a63-23da-4978-946b-7576b6ad088a", "version": "2018-09-12T12:11:54.054628Z" } - ], + }, "metadata": { "cell_suspension/1e07c7cf-66c3-4cd5-a061-71f3e89489ff": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/c94a43f9-257f-4cd0-b2fe-eaf6d5d37d18.dss.hca.json b/test/indexer/data/c94a43f9-257f-4cd0-b2fe-eaf6d5d37d18.dss.hca.json index a5102aea5..69be95e30 100644 --- a/test/indexer/data/c94a43f9-257f-4cd0-b2fe-eaf6d5d37d18.dss.hca.json +++ b/test/indexer/data/c94a43f9-257f-4cd0-b2fe-eaf6d5d37d18.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/95f09de9-0e7a-49c3-8bbc-f3fb512bc86e": { "sha1": "a19f32c06b4286e1608c5e2118fa943afba610a6", "name": "MantonBM6_HiSeq_5_S12_L004_R1_001.fastq.gz", "uuid": "95f09de9-0e7a-49c3-8bbc-f3fb512bc86e", @@ -12,7 +12,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1402192705 }, - { + "sequence_file/ca1ca1f1-f0ab-4224-8422-d5345ccab557": { "sha1": "1e93005ef5f17cdec6cc5a4ea406953a93863306", "name": "MantonBM8_HiSeq_5_S28_L008_R2_001.fastq.gz", "uuid": "ca1ca1f1-f0ab-4224-8422-d5345ccab557", @@ -24,7 +24,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2937097047 }, - { + "sequence_file/9eb02069-4c56-4065-83ac-01eaf5fb9b68": { "sha1": "59728047fcb3e5aac521d50ee4e131f40350f98c", "name": "MantonBM8_HiSeq_1_S24_L007_R1_001.fastq.gz", "uuid": "9eb02069-4c56-4065-83ac-01eaf5fb9b68", @@ -36,7 +36,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1134093703 }, - { + "sequence_file/176d224c-1e70-4ef8-ab96-ea63cfa63888": { "sha1": "8357cf65cae0af7a2524d5c397da31d0d69871e3", "name": "MantonBM7_HiSeq_7_S22_L005_R1_001.fastq.gz", "uuid": "176d224c-1e70-4ef8-ab96-ea63cfa63888", @@ -48,7 +48,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 753163709 }, - 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{ + "sequence_file/ba79090e-1341-4427-9277-e0bc9c303bd5": { "sha1": "6a63f147f71a096a8eca835276a9f4749fa3c743", "name": "MantonBM5_HiSeq_8_S8_L001_I1_001.fastq.gz", "uuid": "ba79090e-1341-4427-9277-e0bc9c303bd5", @@ -108,7 +108,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 405793422 }, - { + "sequence_file/575b968a-f85f-4dd8-bc0c-f00e1d07cd6b": { "sha1": "2eaa759a988b98d834ee0774f10425be3b88e8e5", "name": "MantonBM6_HiSeq_6_S13_L004_R2_001.fastq.gz", "uuid": "575b968a-f85f-4dd8-bc0c-f00e1d07cd6b", @@ -120,7 +120,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 4462684265 }, - { + "sequence_file/2320aa06-7d82-46ec-ad6d-a1c9fd280cde": { "sha1": "0373b8e19eb3ca160200826c237d9da44d01ba21", "name": "MantonBM8_HiSeq_4_S27_L008_I1_001.fastq.gz", "uuid": "2320aa06-7d82-46ec-ad6d-a1c9fd280cde", @@ -132,7 +132,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 358895784 }, - { + "sequence_file/79f04454-2b15-485b-8b19-3d237025d480": { "sha1": "2f8963ab1b5ea9ae4a18beee3055ff9a6e693697", "name": "MantonBM5_HiSeq_6_S6_L001_R1_001.fastq.gz", "uuid": "79f04454-2b15-485b-8b19-3d237025d480", @@ -144,7 +144,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1280563519 }, - 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{ + "sequence_file/c340fbe2-dc1c-4455-a29f-c698244982f8": { "sha1": "7a8f3dcd8b5d34a3be8b04fe9bdda3f6e10edf3e", "name": "MantonBM6_HiSeq_5_S12_L004_R2_001.fastq.gz", "uuid": "c340fbe2-dc1c-4455-a29f-c698244982f8", @@ -1980,7 +1980,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 4046230002 }, - { + "sequence_file/4fa725fa-23c0-4b9b-9c0d-92b82aa75919": { "sha1": "a5f163093bf040c7eb7a9b64a6d84a692b13672c", "name": "MantonBM8_HiSeq_6_S29_L008_R1_001.fastq.gz", "uuid": "4fa725fa-23c0-4b9b-9c0d-92b82aa75919", @@ -1992,7 +1992,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1013398951 }, - { + "sequence_file/d889a2da-2b28-4553-9045-fe9c958b4616": { "sha1": "b9001b15ca0e74714dd1c79202406126b4565214", "name": "MantonBM8_HiSeq_2_S25_L008_R2_001.fastq.gz", "uuid": "d889a2da-2b28-4553-9045-fe9c958b4616", @@ -2004,7 +2004,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2905511422 }, - { + "sequence_file/383bb59e-9082-494a-91b2-804a72830475": { "sha1": "374c2f3b7c578a8be6e1123cd7304dae490410bc", "name": "MantonBM8_HiSeq_1_S24_L008_R2_001.fastq.gz", "uuid": "383bb59e-9082-494a-91b2-804a72830475", @@ -2016,7 +2016,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3195572624 }, - { + "sequence_file/5952c0d9-09c9-4459-a606-515d8a497bd8": { "sha1": "038be38cd2acc5238a24e5f0e49b918e7d7a9c06", "name": "MantonBM7_HiSeq_1_S16_L006_R2_001.fastq.gz", "uuid": "5952c0d9-09c9-4459-a606-515d8a497bd8", @@ -2028,7 +2028,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2741685346 }, - { + "sequence_file/b64bdbba-d2e8-4ec7-a17e-6ca9d872c77e": { "sha1": "7318f8890631cbebf6de0c99fc5420a69c4da475", "name": "MantonBM8_HiSeq_2_S25_L007_R1_001.fastq.gz", "uuid": "b64bdbba-d2e8-4ec7-a17e-6ca9d872c77e", @@ -2040,7 +2040,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1029907246 }, - { + "sequence_file/d1ae69e7-f838-42d1-a207-e50f5b53a788": { "sha1": "afdb307e2f89123d8d081fbe9bae456e3a1213b2", "name": "MantonBM6_HiSeq_1_S9_L004_R1_001.fastq.gz", "uuid": "d1ae69e7-f838-42d1-a207-e50f5b53a788", @@ -2052,7 +2052,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1380086262 }, - { + "sequence_file/7bf9a41d-d9e5-4321-b6a0-b77cc85fddc0": { "sha1": "18b04f10136f457dce4264be3be0492aebf39f10", "name": "MantonBM7_HiSeq_7_S22_L005_I1_001.fastq.gz", "uuid": "7bf9a41d-d9e5-4321-b6a0-b77cc85fddc0", @@ -2064,7 +2064,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 254919046 }, - { + "sequence_file/ed89b525-725a-4e6d-aee9-3b36e78803a8": { "sha1": "8c06b4bd00537133942378dfcbcbda754561fd78", "name": "MantonBM5_HiSeq_2_S2_L002_R2_001.fastq.gz", "uuid": "ed89b525-725a-4e6d-aee9-3b36e78803a8", @@ -2076,7 +2076,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3877148407 }, - { + "sequence_file/8d3d8579-4d9f-4442-9141-653287e9418b": { "sha1": "4feefcb361c7082bdda9a223edde8041ad883169", "name": "MantonBM7_HiSeq_1_S16_L005_R1_001.fastq.gz", "uuid": "8d3d8579-4d9f-4442-9141-653287e9418b", @@ -2088,7 +2088,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 805892570 }, - { + "sequence_file/bcdae4a6-ae9b-4f2a-ad95-b4cfa3ad2a7c": { "sha1": "358fc667d079265c433fd6e0ba6ff5c956511f01", "name": "MantonBM7_HiSeq_8_S23_L005_R2_001.fastq.gz", "uuid": "bcdae4a6-ae9b-4f2a-ad95-b4cfa3ad2a7c", @@ -2100,7 +2100,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2513243900 }, - { + "sequence_file/4eb20891-5ee7-49fe-aa32-52201434772c": { "sha1": "9751d113857c68f2a0cd471bfe288347191c6ccb", "name": "MantonBM7_HiSeq_7_S22_L006_R1_001.fastq.gz", "uuid": "4eb20891-5ee7-49fe-aa32-52201434772c", @@ -2112,7 +2112,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 885299907 }, - { + "sequence_file/8ad4c436-01a2-4d07-8b09-33e86a1d759a": { "sha1": "1d758a82b3568fc0385ccd7de5457ddab1a1790f", "name": "MantonBM5_HiSeq_3_S3_L001_R2_001.fastq.gz", "uuid": "8ad4c436-01a2-4d07-8b09-33e86a1d759a", @@ -2124,7 +2124,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 3906634461 }, - { + "sequence_file/5675b050-9c66-4c34-803f-3e6e0ea0af3f": { "sha1": "759cd0dd273035475e17aa1c1f6b9415992fbe2a", "name": "MantonBM8_HiSeq_2_S25_L008_R1_001.fastq.gz", "uuid": "5675b050-9c66-4c34-803f-3e6e0ea0af3f", @@ -2136,7 +2136,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 970830668 }, - { + "sequence_file/09cce819-9467-4dd8-b91a-ef6b450c4b33": { "sha1": "665c5fe6df86e4017179be35919ecf1213b23764", "name": "MantonBM7_HiSeq_8_S23_L005_R1_001.fastq.gz", "uuid": "09cce819-9467-4dd8-b91a-ef6b450c4b33", @@ -2148,7 +2148,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 863760829 }, - { + "sequence_file/ae61c169-016b-40dc-9e95-b7dc1fd0b346": { "sha1": "eadde9d09edc97ddab74f513de3841b086899181", "name": "MantonBM6_HiSeq_4_S11_L003_R1_001.fastq.gz", "uuid": "ae61c169-016b-40dc-9e95-b7dc1fd0b346", @@ -2160,7 +2160,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1390515067 }, - { + "sequence_file/1f650fa2-e91a-4cde-8ff5-ad2738f0d3cc": { "sha1": "c67307cd65f0f9c677a05aa4acec32c2d62e1304", "name": "MantonBM8_HiSeq_4_S27_L008_R1_001.fastq.gz", "uuid": "1f650fa2-e91a-4cde-8ff5-ad2738f0d3cc", @@ -2172,7 +2172,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1053151114 }, - { + "sequence_file/9b371ad5-94a8-4cbb-a792-45ac8bdff35d": { "sha1": "7ef009e510bb0c3b4b55386089b799f056cef0fa", "name": "MantonBM5_HiSeq_8_S8_L002_R1_001.fastq.gz", "uuid": "9b371ad5-94a8-4cbb-a792-45ac8bdff35d", @@ -2184,7 +2184,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1178862002 }, - { + "sequence_file/becb6174-be03-40fa-85c2-4fa3b9308ef5": { "sha1": "0282c24be5c0fed3856ebd1eab3a00201eb6d9b9", "name": "MantonBM7_HiSeq_6_S21_L005_R2_001.fastq.gz", "uuid": "becb6174-be03-40fa-85c2-4fa3b9308ef5", @@ -2196,7 +2196,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 2358285121 }, - { + "sequence_file/30e7db70-fec3-48f1-bf7b-71adf9e8d7f1": { "sha1": "2f3294a1b07d9b768a063efcbede8fa8a25f4b84", "name": "MantonBM7_HiSeq_6_S21_L005_R1_001.fastq.gz", "uuid": "30e7db70-fec3-48f1-bf7b-71adf9e8d7f1", @@ -2208,7 +2208,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 805964176 }, - { + "sequence_file/87e595d8-7285-4067-a73f-e80944ffae3c": { "sha1": "5e1f5912b09a898e1cc788c45149fc0428114af6", "name": "MantonBM8_HiSeq_5_S28_L007_R1_001.fastq.gz", "uuid": "87e595d8-7285-4067-a73f-e80944ffae3c", @@ -2220,7 +2220,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 1047009312 }, - { + "sequence_file/e44d2d64-df79-4a74-b88b-093102e4e799": { "sha1": "e5d801cd1008e6d685060d314a93f35339a65786", "name": "MantonBM7_HiSeq_6_S21_L006_R1_001.fastq.gz", "uuid": "e44d2d64-df79-4a74-b88b-093102e4e799", @@ -2232,7 +2232,7 @@ "content-type": "application/gzip; dcp-type=data", "size": 949973774 } - ], + }, "metadata": { "project/6504d48c-1610-43aa-8cf8-214a960e110c": { "content": { diff --git a/test/indexer/data/cfab8304-dc9f-439e-af29-f8eb75b0729d.dss.hca.json b/test/indexer/data/cfab8304-dc9f-439e-af29-f8eb75b0729d.dss.hca.json index f5c4700ed..488d1aac7 100644 --- a/test/indexer/data/cfab8304-dc9f-439e-af29-f8eb75b0729d.dss.hca.json +++ b/test/indexer/data/cfab8304-dc9f-439e-af29-f8eb75b0729d.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/3f193e72-8efe-4c2a-ace1-79140ca36477": { + "content-type": "application/gzip; dcp-type=data", "crc32c": "64e45095", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "d879f732-d8d4-4251-a2ca-a91a852a034b", "version": "2019-07-18T21:29:49.534039Z" }, - { + "sequence_file/078b71eb-220a-43e5-a0fc-4f231e90f85f": { "content-type": "application/gzip; dcp-type=data", "crc32c": "7046ca69", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "1e14d503-31b1-4db6-82ba-f8d83bd85b9b", "version": "2019-07-18T21:29:49.697974Z" } - ], + }, "metadata": { "cell_suspension/13eab62e-0038-4997-aeab-aa3192cc090e": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.1.1/cell_suspension", diff --git a/test/indexer/data/d0e17014-9a58-4763-9e66-59894efbdaa8.dss.hca.json b/test/indexer/data/d0e17014-9a58-4763-9e66-59894efbdaa8.dss.hca.json index dfc852edc..2b7651096 100644 --- a/test/indexer/data/d0e17014-9a58-4763-9e66-59894efbdaa8.dss.hca.json +++ b/test/indexer/data/d0e17014-9a58-4763-9e66-59894efbdaa8.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/042dce4a-003b-492b-9371-e1897f52d8d9": { + "content-type": "application/gzip; dcp-type=data", "crc32c": "db304acb", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "3cf85a5a-2776-4c51-b149-1442de3d0b9b", "version": "2018-10-03T14:41:36.375652Z" }, - { + "sequence_file/80036f72-7fde-46e9-821b-17dbbe0509bb": { "content-type": "application/gzip; dcp-type=data", "crc32c": "568bb5fb", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "b6b67f57-7db2-402b-9e87-b20c73c096f0", "version": "2018-10-03T14:41:36.520415Z" }, - { + "supplementary_file/665b4341-9950-4e59-a401-e4a097256f1e": { "content-type": "application/pdf; dcp-type=data", "crc32c": "fd55b5ee", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "e27f8576-965d-4d6e-aec8-b34021a3145f", "version": "2018-10-03T14:41:36.722346Z" }, - { + "supplementary_file/300ee490-edca-46b1-b23d-c9458ebb9c6e": { "content-type": "application/pdf; dcp-type=data", "crc32c": "55317e97", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "1e894ba2-248f-47e9-af2d-06c6334e24fa", "version": "2018-10-03T14:41:36.910867Z" } - ], + }, "metadata": { "cell_suspension/36a391f6-d118-4fd7-be51-9196b0f3184f": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/d5e01f9d-615f-4153-8a56-f2317d7d9ce8.dss.hca.json b/test/indexer/data/d5e01f9d-615f-4153-8a56-f2317d7d9ce8.dss.hca.json index 075390d03..d22eb6192 100644 --- a/test/indexer/data/d5e01f9d-615f-4153-8a56-f2317d7d9ce8.dss.hca.json +++ b/test/indexer/data/d5e01f9d-615f-4153-8a56-f2317d7d9ce8.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/84d27b0a-348e-4af2-82cb-c37973a9fe17": { + "content-type": "text/plain; dcp-type=data", "crc32c": "7171048d", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "8206df81-4e3a-4db9-b3b5-5aa4b6dfc3a4", "version": "2018-09-06T18:57:41.428997Z" }, - { + "analysis_file/36671cf7-ab85-409f-a28b-27c489e2ab51": { "content-type": "text/plain; dcp-type=data", "crc32c": "02a4d655", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "460eba58-b2c3-472d-876b-d9834ec539a5", "version": "2018-09-06T18:57:42.154511Z" }, - { + "analysis_file/4ba5d8f9-2d1c-432d-9fa5-7e22eff732f1": { "content-type": "text/plain; dcp-type=data", "crc32c": "618ae98a", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "362696a2-ecd4-4cca-9150-e3201392108b", "version": "2018-09-06T18:57:42.621655Z" }, - { + "analysis_file/f71ca185-a4d4-42ec-b6f0-dbb140cb2f23": { "content-type": "text/plain; dcp-type=data", "crc32c": "75c571b6", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "d998bfa6-ac23-4211-885f-91e72a2d2f89", "version": "2018-09-06T18:57:42.939509Z" }, - { + "analysis_file/a0521704-08fa-4594-90da-0b29ee40dc0a": { "content-type": "application/pdf; dcp-type=data", "crc32c": "4bdf84c1", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "15bf35b5-4d06-4443-89c0-2a2d17aac62a", "version": "2018-09-06T18:57:43.285121Z" }, - { + "analysis_file/8dfb781a-9fa1-488d-9ddc-e8272bef5fe0": { "content-type": "text/plain; dcp-type=data", "crc32c": "49b17cd3", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "373337f2-54eb-41ab-97ec-94801cfd26c4", "version": "2018-09-06T18:57:43.796420Z" }, - { + "analysis_file/e80fdd63-3c87-45f9-b1f7-9d7b7122dfdf": { "content-type": "text/plain; dcp-type=data", "crc32c": "faf51a99", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "c4a34f85-2d7d-4a54-b519-88bfcc9d17ed", "version": "2018-09-06T18:57:44.147629Z" }, - { + "analysis_file/29164286-43cf-43ca-b3b9-ad61f2e7a1c8": { "content-type": "text/plain; dcp-type=data", "crc32c": "7dd5fc10", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "4df968bf-3688-457e-a7f6-4e153ec1e489", "version": "2018-09-06T18:57:44.575566Z" }, - { + "analysis_file/46dc4f0d-11c0-4000-b6e9-710553a2a9cc": { "content-type": "application/pdf; dcp-type=data", "crc32c": "bd717f27", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "43aef3ac-aec7-4b84-afcc-cb2a0d82cee3", "version": "2018-09-06T18:57:44.951809Z" }, - { + "analysis_file/b78926da-4a2c-4af9-8cd8-4ae337336ccc": { "content-type": "text/plain; dcp-type=data", "crc32c": "32754f99", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "5ec31a75-91c7-4241-8d5c-8682f02c0059", "version": "2018-09-06T18:57:45.320623Z" }, - { + "analysis_file/a002691d-8568-40a3-9fd2-bae403916e08": { "content-type": "application/pdf; dcp-type=data", "crc32c": "35f41e6e", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "9185340d-dcae-40e2-b76b-4f45eda95486", "version": "2018-09-06T18:57:45.653327Z" }, - { + "analysis_file/0963c920-cd31-45bd-8844-ff0200ff1667": { "content-type": "text/plain; dcp-type=data", "crc32c": "50412a1a", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "cbef3cec-75ab-4cd5-90f0-1d32602d9176", "version": "2018-09-06T18:57:46.559751Z" }, - { + "analysis_file/fff7c188-ff07-4014-83a5-3f90dfafc09a": { "content-type": "text/plain; dcp-type=data", "crc32c": "f559ea99", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "16dcefba-f947-41dd-bb14-b6fc77dfb1a8", "version": "2018-09-06T18:57:47.181102Z" }, - { + "analysis_file/cf4782d0-79e1-43dc-8313-93447a35620b": { "content-type": "application/pdf; dcp-type=data", "crc32c": "ee63fc32", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "420fa634-b60b-4b13-8e20-91cdffb1779a", "version": "2018-09-06T18:57:49.831713Z" }, - { + "analysis_file/63cb3d77-fded-4235-87a2-50e5f756826b": { "content-type": "text/plain; dcp-type=data", "crc32c": "1deb97f8", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "1a2f8bc9-0314-4b11-9667-d98dd25f6356", "version": "2018-09-06T18:57:51.209724Z" }, - { + "analysis_file/140c27ca-12de-4425-953b-b1d4c2c918fc": { "content-type": "application/pdf; dcp-type=data", "crc32c": "9ab095d7", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "87a2d38c-5b38-4322-bbba-cbe668385b78", "version": "2018-09-06T18:57:52.560692Z" }, - { + "analysis_file/38c67a5f-db0c-4d5f-839b-b061709d8be9": { "content-type": "text/plain; dcp-type=data", "crc32c": "11777958", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "df9b02ce-8f7f-4bdb-9e04-8ea0763734f8", "version": "2018-09-06T18:57:52.970974Z" }, - { + "analysis_file/9efb3c26-4fd8-4986-8a72-1507880e6ab7": { "content-type": "application/pdf; dcp-type=data", "crc32c": "24adcee3", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "b1d24d26-fcf8-4c16-a509-bc6bb59b1eb7", "version": "2018-09-06T18:57:53.355719Z" }, - { + "analysis_file/fff934f7-4a3e-442b-99b2-3479762db53c": { "content-type": "text/plain; dcp-type=data", "crc32c": "f5cd552d", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "a80975e3-1463-4135-bc4a-9c5763f6bdd6", "version": "2018-09-06T18:57:53.670823Z" }, - { + "analysis_file/3268e4bf-591a-4ca3-b7ad-440f61460610": { "content-type": "application/gzip; dcp-type=data", "crc32c": "8c9b2f5f", "indexed": false, @@ -240,7 +241,7 @@ "uuid": "6752851d-b55d-4387-82f7-e34ffd7ff05c", "version": "2018-09-06T18:57:54.127138Z" }, - { + "analysis_file/68b243fc-c128-40ac-8e51-0383b4860c29": { "content-type": "text/plain; dcp-type=data", "crc32c": "d8032370", "indexed": false, @@ -252,7 +253,7 @@ "uuid": "d9f81d5a-cf86-454a-b708-2522183521b3", "version": "2018-09-06T18:57:54.366094Z" }, - { + "analysis_file/4448df34-27c1-413d-bfc1-a508f238e2ed": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "612947c2", "indexed": false, @@ -264,7 +265,7 @@ "uuid": "3659a48e-fbcb-4639-bfc8-16da76f0300d", "version": "2018-09-06T18:57:54.707345Z" }, - { + "analysis_file/c2c8aec7-489b-4c2b-9b79-dc9f9a6d2d1d": { "content-type": "application/gzip; dcp-type=data", "crc32c": "a2359780", "indexed": false, @@ -276,7 +277,7 @@ "uuid": "a824e6d7-e28e-4bd0-a1ca-e96382d16cb4", "version": "2018-09-06T18:57:55.004613Z" }, - { + "analysis_file/b4b3e436-19f2-4b56-b30c-dd22682e94fe": { "content-type": "text/plain; dcp-type=data", "crc32c": "25033e43", "indexed": false, @@ -288,7 +289,7 @@ "uuid": "6b199c79-18e7-453a-bf34-7453aa8d4058", "version": "2018-09-06T18:57:55.244962Z" }, - { + "analysis_file/477b3e82-552d-47dc-a27b-22d242298362": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "a47b964a", "indexed": false, @@ -300,7 +301,7 @@ "uuid": "783bfe7a-dc47-44ac-b19e-4e3dd3f09129", "version": "2018-09-06T18:57:55.773304Z" }, - { + "analysis_file/e274e132-3fe1-44e9-879b-d6bc22cba2ab": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "7062f2c5", "indexed": false, @@ -312,7 +313,7 @@ "uuid": "5931e486-e7f5-494d-b8b5-f4efab05c956", "version": "2018-09-06T18:57:56.210397Z" }, - { + "analysis_file/2c11a11d-840c-4a3d-b811-e0e03c2e0976": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "de975d78", "indexed": false, @@ -324,7 +325,7 @@ "uuid": "05f1fe7b-4e71-4ca6-81e2-f2ccd8e89b89", "version": "2018-09-06T18:57:56.812784Z" }, - { + "analysis_file/f3ca70e5-f530-4890-be95-e3635dcf164a": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "0f2e6a1c", "indexed": false, @@ -336,7 +337,7 @@ "uuid": "124ad630-ac99-4447-9114-8a383bcff077", "version": "2018-09-06T18:57:57.676451Z" }, - { + "analysis_file/12bcb6de-0f5b-4581-8d02-4ed3c59c13ab": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "9a8ecacb", "indexed": false, @@ -348,7 +349,7 @@ "uuid": "cd228ff5-d05e-49af-91ab-57f6b8cea769", "version": "2018-09-06T18:57:57.964761Z" }, - { + "analysis_file/e3a50ba8-8e82-4b7f-89de-b6f512037e3d": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "0d0c6dfb", "indexed": false, @@ -360,7 +361,7 @@ "uuid": "bb109a5e-525a-47ef-b20f-2bf4f37b3de3", "version": "2018-09-06T18:57:58.163443Z" }, - { + "analysis_file/cf3a255f-e731-4912-a7b1-cbec1b0d5239": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "115ea372", "indexed": false, @@ -372,7 +373,7 @@ "uuid": "7a1cf419-f901-487f-994e-ff98ec7015da", "version": "2018-09-06T18:57:58.621633Z" }, - { + "sequence_file/c5d76832-f738-43a0-afe7-f62aa53a7824": { "content-type": "application/gzip; dcp-type=data", "crc32c": "cfa3d5df", "indexed": false, @@ -384,7 +385,7 @@ "uuid": "4cb61abf-25eb-4779-a9fd-16ce3371d83f", "version": "2018-09-06T18:03:20.549271Z" }, - { + "sequence_file/be1f1c69-5ad5-4d2c-a86f-c43f1f003210": { "content-type": "application/gzip; dcp-type=data", "crc32c": "d1c4cd35", "indexed": false, @@ -396,7 +397,7 @@ "uuid": "abced4f5-1949-4d83-8b28-254753582378", "version": "2018-09-06T18:03:20.906445Z" } - ], + }, "metadata": { "cell_suspension/13b00a71-4916-441c-a863-0204b40ba127": { "describedBy": "http://schema.integration.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/d7b8cbff-aee9-5a05-a4a1-d8f4e720aee7.dss.hca.json b/test/indexer/data/d7b8cbff-aee9-5a05-a4a1-d8f4e720aee7.dss.hca.json index 67955da34..6e577926c 100644 --- a/test/indexer/data/d7b8cbff-aee9-5a05-a4a1-d8f4e720aee7.dss.hca.json +++ b/test/indexer/data/d7b8cbff-aee9-5a05-a4a1-d8f4e720aee7.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/f0c8ac7c-1c4a-5c9c-9286-c8b16208f9ae": { "content-type": "application/gzip; dcp-type=data", "crc32c": "4dab8938", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "121add5e-8ed0-5368-b2f9-6a4d7fec0393", "version": "2021-01-01T00:00:00.000000Z" } - ], + }, "metadata": { "project/90bf705c-d891-5ce2-aa54-094488b445c6": { "array_express_accessions": [ diff --git a/test/indexer/data/dcccb551-4766-4210-966c-f9ee25d19190.dss.hca.json b/test/indexer/data/dcccb551-4766-4210-966c-f9ee25d19190.dss.hca.json index 1cc9b3a28..55b07abb2 100644 --- a/test/indexer/data/dcccb551-4766-4210-966c-f9ee25d19190.dss.hca.json +++ b/test/indexer/data/dcccb551-4766-4210-966c-f9ee25d19190.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/cf93f747-1392-4670-8eb3-3ac60a96855e": { + "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "e511d1cf", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "58b69c85-f5f3-4b94-8933-5520a54a6b25", "version": "2018-10-18T20:46:12.510116Z" }, - { + "analysis_file/477c0b3e-4a06-4214-8f27-58199ba63528": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "b372aac3-0e2a-4815-9cb8-06957c0034d7", "version": "2018-10-18T20:46:12.954781Z" }, - { + "analysis_file/ad6d5170-d74b-408c-af6b-25a14315c9da": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "883bc27f", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "c81783cd-0531-4f64-9eef-a3e622152aae", "version": "2018-10-18T20:46:13.142208Z" }, - { + "analysis_file/50be9b67-fae5-4472-9719-478dd1303d6e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "182c881d", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "17456232-f453-4178-b6d4-4c28840e0e9f", "version": "2018-10-18T20:46:13.433149Z" }, - { + "analysis_file/fd16b62e-e540-4f03-8ba0-07d0c204e3c8": { "content-type": "text/csv; dcp-type=data", "crc32c": "d3902ae4", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "4cca0b74-7bfb-45a5-8a26-7342151805c9", "version": "2018-10-18T20:46:14.214293Z" }, - { + "analysis_file/3c41b5b6-f480-4d47-8c5e-155e7c1adf54": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "1462f373", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "0664a03c-9199-430e-9df6-e83e4a77df16", "version": "2018-10-18T20:46:14.565244Z" }, - { + "analysis_file/022a217c-384d-4d9d-8631-6397b6838e3a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "63dd3167", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "a12a783c-6b91-4788-80b3-f25dae7838ce", "version": "2018-10-18T20:46:14.923428Z" }, - { + "analysis_file/9b778e46-0c51-4260-8e3f-000ecc145f0a": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "a40c0ecb", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "52d08a61-8d7b-4fd6-98e6-0620f815ecc5", "version": "2018-10-18T20:46:15.089157Z" }, - { + "analysis_file/af025a74-53f1-4972-b50d-53095b5ffac2": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "03eb39ec", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "40bb9b37-9c3c-4be4-adf6-c8609493d223", "version": "2018-10-18T20:46:15.963496Z" }, - { + "analysis_file/e8395271-7c8e-4ec4-9598-495df43fe5fd": { "content-type": "text/html; dcp-type=data", "crc32c": "d5973bce", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "05311530-98da-4ac7-a4da-244c0a19ae4a", "version": "2018-10-18T20:46:17.373562Z" }, - { + "analysis_file/211a8fbf-b190-4576-ac2f-2b1a91743abb": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7c54ea3d", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "d0757b34-5974-44e3-a8ae-5b60f7691913", "version": "2018-10-18T20:46:18.194283Z" }, - { + "analysis_file/17222e3a-5757-45e9-9dfe-c4b6aa10f28a": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "5d8aea02-2dff-4bda-a218-2ee4c5cabfb4", "version": "2018-10-18T20:46:18.594371Z" }, - { + "analysis_file/2fb8a975-b50c-4528-b850-838a19e19a1e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "283d035a", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "934faa14-ec75-4171-8c08-5ab20cc6ebff", "version": "2018-10-18T20:46:18.842610Z" }, - { + "sequence_file/213381ea-6161-4159-853e-cfcae4968001": { "content-type": "application/gzip; dcp-type=data", "crc32c": "e80c9f6f", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "8a0670ac-e3bd-4d38-afdc-0cf6d85e6adf", "version": "2018-10-11T22:04:37.262084Z" }, - { + "sequence_file/9ee3da9e-83ca-4c02-84d6-ac09702b12ba": { "content-type": "application/gzip; dcp-type=data", "crc32c": "17a27554", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "d1e5058a-b53c-4e71-9cbc-1853d95b75bd", "version": "2018-10-11T22:04:37.518108Z" }, - { + "sequence_file/330a08ca-ae8e-4f1f-aa03-970abcd27f39": { "content-type": "application/gzip; dcp-type=data", "crc32c": "577e04eb", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "a36fe69b-874b-4b9b-8e77-68be23cf98cd", "version": "2018-10-11T22:04:37.811384Z" }, - { + "supplementary_file/281c2d08-9e43-47f9-b937-e733e3ba3322": { "content-type": "application/pdf; dcp-type=data", "crc32c": "1e67ff31", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "9485d3c7-55f6-49f5-9eb1-ff85d8e4ef9f", "version": "2018-10-11T22:04:38.049605Z" }, - { + "supplementary_file/ae1d6fa7-964f-465a-8c78-565206827434": { "content-type": "application/pdf; dcp-type=data", "crc32c": "201fded1", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "05f653e7-2920-499b-95fe-455d585da2b7", "version": "2018-10-11T22:04:38.189879Z" }, - { + "supplementary_file/f518a8cc-e1d9-4fc9-bc32-491dd8543902": { "content-type": "application/pdf; dcp-type=data", "crc32c": "47441108", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "5eca9eb4-f837-4aa4-98e1-172a7c6da7ee", "version": "2018-10-11T22:04:38.356356Z" } - ], + }, "metadata": { "cell_suspension/803fd65a-c578-4c4f-a39e-bedec24e2578": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/e0ae8cfa-2b51-4419-9cde-34df44c6458a.dss.hca.json b/test/indexer/data/e0ae8cfa-2b51-4419-9cde-34df44c6458a.dss.hca.json index 7dd5e31d0..87f1f59b0 100644 --- a/test/indexer/data/e0ae8cfa-2b51-4419-9cde-34df44c6458a.dss.hca.json +++ b/test/indexer/data/e0ae8cfa-2b51-4419-9cde-34df44c6458a.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/12b25cbd-8cfa-4f0e-818f-d6ba3e823af4": { + "content-type": "application/gzip; dcp-type=data", "crc32c": "43d9f66a", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "76889aa2-de8e-42dc-9eaa-0d947ccb2604", "version": "2018-12-05T23:08:45.431819Z" }, - { + "sequence_file/65d3d936-ae9d-4a18-a8c7-73ce6132355e": { "content-type": "application/gzip; dcp-type=data", "crc32c": "dbb883d5", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "4cf0a9a7-111c-4284-82b9-5ae7326f235e", "version": "2018-12-05T23:08:45.915531Z" } - ], + }, "metadata": { "cell_suspension/d29c64bd-b8d2-4e72-abbc-5536a44eac12": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/e2c3054e-9fba-4d7a-b85b-a2220d16da73.dss.hca.json b/test/indexer/data/e2c3054e-9fba-4d7a-b85b-a2220d16da73.dss.hca.json index de01304f7..070e6834a 100644 --- a/test/indexer/data/e2c3054e-9fba-4d7a-b85b-a2220d16da73.dss.hca.json +++ b/test/indexer/data/e2c3054e-9fba-4d7a-b85b-a2220d16da73.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/f5f82e76-173c-4f95-b25a-4ddc80bd1f86": { + "content-type": "text/plain; dcp-type=data", "crc32c": "6bb92520", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "d7408870-a345-4d5c-be33-edbd69385529", "version": "2018-10-24T23:42:14.573498Z" }, - { + "analysis_file/9b32ad49-e38d-458c-8976-668daa24c30e": { "content-type": "text/plain; dcp-type=data", "crc32c": "06cf46cb", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "4754bb8b-fc1f-431d-b063-fdbc2930fbf3", "version": "2018-10-24T23:42:15.014013Z" }, - { + "analysis_file/479b4d96-b76b-41a7-9606-a523d701ce0c": { "content-type": "text/plain; dcp-type=data", "crc32c": "2d0486d5", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "c594b1a2-6a72-4744-8fc4-07debf086cbf", "version": "2018-10-24T23:42:15.215728Z" }, - { + "analysis_file/f0b686e9-7a26-40f1-bdb2-58a1414d77eb": { "content-type": "text/plain; dcp-type=data", "crc32c": "e1c51bd2", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "bb1b99aa-1343-4825-88c9-1b67400982fc", "version": "2018-10-24T23:42:15.408775Z" }, - { + "analysis_file/30f8d79e-8a4d-4fd3-93af-b5346f16b640": { "content-type": "text/plain; dcp-type=data", "crc32c": "53c649b7", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "58fb543a-1021-499c-a96d-aa49612ece44", "version": "2018-10-24T23:42:15.703115Z" }, - { + "analysis_file/20a011f9-e862-413b-bf1c-b43f3c64b874": { "content-type": "text/csv; dcp-type=data", "crc32c": "09e98693", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "7270a312-321a-4c33-80f3-4b02580be397", "version": "2018-10-24T23:42:15.988377Z" }, - { + "analysis_file/c8caa0c3-7e78-40ac-a7f9-6219cbc2ee50": { "content-type": "text/csv; dcp-type=data", "crc32c": "6dface93", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "4c7e9d51-cd0a-4a0e-82e3-4c70550be2f0", "version": "2018-10-24T23:42:16.282105Z" }, - { + "analysis_file/bdea53d3-49a6-4f5c-8504-d74996fe0745": { "content-type": "text/csv; dcp-type=data", "crc32c": "522a934d", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "3b5057e7-d9fa-4c66-b172-66efb9d46c7f", "version": "2018-10-24T23:42:16.551760Z" }, - { + "analysis_file/0d27455f-d951-472a-849a-e234efca42d6": { "content-type": "text/csv; dcp-type=data", "crc32c": "3290e07b", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "8f886981-71ca-4d50-945d-fcad7456dce7", "version": "2018-10-24T23:42:16.801147Z" }, - { + "analysis_file/2da7e3ba-23f5-4e81-9c36-5106b55bcdce": { "content-type": "text/csv; dcp-type=data", "crc32c": "2ca91ed2", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "6a02ba20-ba21-4685-b616-2651ce61df5c", "version": "2018-10-24T23:42:17.068963Z" }, - { + "analysis_file/8776d7ea-5e3e-49a0-bd97-a713e9a14f3e": { "content-type": "text/csv; dcp-type=data", "crc32c": "78cad56f", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "c64fddc4-47bb-4219-8e1f-2c9b05192c30", "version": "2018-10-24T23:42:17.343576Z" }, - { + "analysis_file/4fb97024-86ac-4d01-907d-d9b3159cf4be": { "content-type": "text/csv; dcp-type=data", "crc32c": "37833b4b", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "d5dcc2ea-11a3-40f6-94bd-b58584b9b9ea", "version": "2018-10-24T23:42:17.572545Z" }, - { + "analysis_file/e1982adb-80b9-4ea6-a616-9206b0846afd": { "content-type": "application/gzip; dcp-type=data", "crc32c": "d05e6e24", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "0e537564-ae91-460c-8b64-db6736fd342f", "version": "2018-10-24T23:42:17.849582Z" }, - { + "analysis_file/b9254ef6-3f3a-4259-8829-01a6006fe5e3": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "383a286e", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "7e977e69-0abf-4e2e-925b-fd312a91996c", "version": "2018-10-24T23:42:17.966695Z" }, - { + "analysis_file/4bdb540a-7189-490a-9823-0f5c67e146d4": { "content-type": "application/gzip; dcp-type=data", "crc32c": "8be628a6", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "c5745a0b-01c4-42ec-a4a3-4de76b72e3c7", "version": "2018-10-24T23:42:18.360888Z" }, - { + "analysis_file/02e4b9e0-0750-4a21-8b18-46df9f7c86b5": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "1fcc995f", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "780a8a11-d536-42be-9c92-a408b23f13a0", "version": "2018-10-24T23:42:18.517550Z" }, - { + "analysis_file/55a4c327-4ca0-400d-88b9-91ccd89cad31": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "27f749cf", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "989f8eac-c511-49e2-b4eb-1c7fde939df6", "version": "2018-10-24T23:42:19.746293Z" }, - { + "analysis_file/dd5a65c4-23fc-40ba-8caf-37393a059e0f": { "content-type": "application/json; dcp-type=data", "crc32c": "c597ac81", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "bc155f7e-ed46-41f1-a54b-5d094e1e32f2", "version": "2018-10-24T23:42:20.467152Z" }, - { + "analysis_file/bc051b66-16fd-49b0-aca7-d6b29c445f61": { "content-type": "application/json; dcp-type=data", "crc32c": "444a7707", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "0878349d-9608-4389-9b34-ac17d641c396", "version": "2018-10-24T23:42:20.712048Z" }, - { + "analysis_file/b104083d-c607-4ad5-993e-e97632c9e4d9": { "content-type": "application/json; dcp-type=data", "crc32c": "f35d7e55", "indexed": false, @@ -240,7 +241,7 @@ "uuid": "65cf94ff-f203-4b93-aca4-2ef7ad3f5aa0", "version": "2018-10-24T23:42:20.881581Z" }, - { + "analysis_file/b6576e30-18a2-412c-846d-377ad50cceed": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "1563daec", "indexed": false, @@ -252,7 +253,7 @@ "uuid": "0bf15e1e-cc40-43e1-b01f-93f2e725fae7", "version": "2018-10-24T23:42:21.017096Z" }, - { + "analysis_file/544245b6-180b-4765-b8d2-db9a07fd2790": { "content-type": "application/json; dcp-type=data", "crc32c": "88068bce", "indexed": false, @@ -264,7 +265,7 @@ "uuid": "fd42c155-6189-4789-83b1-c6f3a7706228", "version": "2018-10-24T23:42:21.309195Z" }, - { + "analysis_file/bdfc95f5-452d-45f0-a539-03e70be04d73": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "ae799606", "indexed": false, @@ -276,7 +277,7 @@ "uuid": "3877ba3c-3db8-4538-b3c6-39a4d70269eb", "version": "2018-10-24T23:42:21.442289Z" }, - { + "analysis_file/46742270-3e39-45a2-99d6-50c2e1277045": { "content-type": "application/json; dcp-type=data", "crc32c": "38a3821e", "indexed": false, @@ -288,7 +289,7 @@ "uuid": "aea258d4-650e-45c8-890a-d2179a76a326", "version": "2018-10-24T23:42:21.729567Z" }, - { + "analysis_file/1251ee1c-3f6f-43ef-b540-c4a3f3461e78": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "afce17ed", "indexed": false, @@ -300,7 +301,7 @@ "uuid": "af1aec5c-e200-4d9b-8ea4-f55bc4285615", "version": "2018-10-24T23:42:21.861075Z" }, - { + "analysis_file/ad5a0217-3f5e-4293-bf4e-d56f55453dd5": { "content-type": "application/json; dcp-type=data", "crc32c": "c6565f75", "indexed": false, @@ -312,7 +313,7 @@ "uuid": "efb0702d-9593-4199-8129-2a86a13600a9", "version": "2018-10-24T23:42:21.990379Z" }, - { + "analysis_file/fc842ec4-3fdc-447c-82a3-b59584f6509f": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "c0b4fc1c", "indexed": false, @@ -324,7 +325,7 @@ "uuid": "7474a924-91db-4468-81cf-4a28e6dacda5", "version": "2018-10-24T23:42:22.121285Z" }, - { + "analysis_file/858b76ef-bb5b-44e2-b6fa-09efd3430a98": { "content-type": "application/json; dcp-type=data", "crc32c": "80af448b", "indexed": false, @@ -336,7 +337,7 @@ "uuid": "09144ccc-8f59-47c3-960d-1f97cedc0ba6", "version": "2018-10-24T23:42:22.356058Z" }, - { + "analysis_file/8c4c53c9-87a3-4f28-8c65-57090360a9dc": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "f282f971", "indexed": false, @@ -348,7 +349,7 @@ "uuid": "0ecd1e02-2cf6-4c71-af42-259036b78284", "version": "2018-10-24T23:42:22.492841Z" }, - { + "analysis_file/ec81ed84-ba61-4361-b611-c2ab3bf3f08e": { "content-type": "application/json; dcp-type=data", "crc32c": "b89e6723", "indexed": false, @@ -360,7 +361,7 @@ "uuid": "e6bc21b2-fbbd-46f3-9b3a-df0d547a3142", "version": "2018-10-24T23:42:22.705276Z" }, - { + "analysis_file/51adec61-135c-4a93-b3d2-50019c0f58ad": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "1c9916e8", "indexed": false, @@ -372,7 +373,7 @@ "uuid": "63818a29-a94e-49ca-8c83-15e7813510d9", "version": "2018-10-24T23:42:22.837521Z" }, - { + "analysis_file/abfb543f-345d-4f01-8a3d-c9c02b87cd0b": { "content-type": "application/json; dcp-type=data", "crc32c": "88035931", "indexed": false, @@ -384,7 +385,7 @@ "uuid": "599c92d3-6d60-4f14-a0e4-f6970958ae5a", "version": "2018-10-24T23:42:23.188749Z" }, - { + "analysis_file/1afd626b-6730-4cb6-92c1-3379e7944f66": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "af11e230", "indexed": false, @@ -396,7 +397,7 @@ "uuid": "5f87557b-8b9e-44e5-b3e5-f1a785530418", "version": "2018-10-24T23:42:23.363215Z" }, - { + "sequence_file/c8ed5871-28e6-42e2-8ccf-caa586a72c9e": { "content-type": "application/gzip; dcp-type=data", "crc32c": "0515f3b7", "indexed": false, @@ -408,7 +409,7 @@ "uuid": "e4232d09-11b1-44b6-a1d5-2049f2d2ef2e", "version": "2018-10-23T09:40:41.472595Z" }, - { + "sequence_file/6291c2e7-3cc4-4d87-9bf6-2d6f6b131628": { "content-type": "application/gzip; dcp-type=data", "crc32c": "e1a944cc", "indexed": false, @@ -420,7 +421,7 @@ "uuid": "8194adce-71ef-45aa-af5a-468fc0f88c1c", "version": "2018-10-23T09:40:41.717604Z" } - ], + }, "metadata": { "cell_suspension/75d0f208-d856-4e12-8916-a84f8f0e5338": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/f0731ab4-6b80-4eed-97c9-4984de81a47c.dss.hca.json b/test/indexer/data/f0731ab4-6b80-4eed-97c9-4984de81a47c.dss.hca.json index 517dddd95..2775f81c5 100644 --- a/test/indexer/data/f0731ab4-6b80-4eed-97c9-4984de81a47c.dss.hca.json +++ b/test/indexer/data/f0731ab4-6b80-4eed-97c9-4984de81a47c.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/2afae9e4-be02-4d57-bc44-24931f71d54c": { + "content-type": "application/gzip; dcp-type=data", "crc32c": "28590550", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "9689a1ab-02c3-48a1-ac8c-c1e097445ed8", "version": "2019-07-23T06:45:56.193221Z" }, - { + "analysis_file/7a42f079-a318-4975-9d91-8f1e816531de": { "content-type": "application/vnd.openxmlformats-officedocument.wordprocessingml.document; dcp-type=data", "crc32c": "56fa99fc", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "787084e4-f61e-4a15-b6b9-56c87fb31410", "version": "2019-07-23T06:45:57.057500Z" }, - { + "analysis_file/aaaf3d7b-9602-4d74-aa6f-b429e1e8b8ef": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "57fd2051", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "b2976a9e-f37a-4dd4-91b6-ff57ecf2d3d9", "version": "2019-07-23T06:45:57.870215Z" }, - { + "analysis_file/433f86ab-0a07-4f8c-ac18-b4dec37fa434": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "f65585b6", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "205b6575-dde3-4b63-b78a-b290c5b87403", "version": "2019-07-23T06:45:58.105975Z" }, - { + "analysis_file/5ec54ddd-c6d7-4ae6-a822-94720c7bdbd1": { "content-type": "application/gzip; dcp-type=data", "crc32c": "76be2773", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "28dfb106-a259-44dd-bf8e-63683c0a6dec", "version": "2019-07-23T06:45:58.957224Z" }, - { + "analysis_file/b7890117-4733-4979-91ec-ba0208e088e9": { "content-type": "application/gzip; dcp-type=data", "crc32c": "d08eee5e", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "ff45fad9-74ba-4530-87b7-aa9997f0c68a", "version": "2019-07-23T06:45:59.355450Z" }, - { + "analysis_file/5350b852-077e-43e3-885b-d1b37b3d7a6e": { "content-type": "application/json; dcp-type=data", "crc32c": "2ec4881d", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "e488bef5-04a9-4adb-bf6e-279b11daa7af", "version": "2019-07-23T06:45:59.571299Z" }, - { + "analysis_file/2c0bc0eb-739f-42ea-a5df-7d2943977fab": { "content-type": "application/json; dcp-type=data", "crc32c": "444a7707", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "edeec1a2-026e-4467-9f3d-7887a9adc91d", "version": "2019-07-23T06:45:59.857953Z" }, - { + "analysis_file/93153632-bf8c-49bb-a283-00957c7f853c": { "content-type": "application/json; dcp-type=data", "crc32c": "444a7707", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "5c166087-c87f-45d6-a531-8ec6d29754dd", "version": "2019-07-23T06:46:00.049191Z" }, - { + "analysis_file/01d206e5-47b4-48dd-b823-74e62e2325d1": { "content-type": "application/json; dcp-type=data", "crc32c": "e7b081a4", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "c3ba2d3d-58fc-42b2-9c06-9fada43f41b7", "version": "2019-07-23T06:46:00.296986Z" }, - { + "analysis_file/752857d0-35f9-46fa-9888-fde25f21195b": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "ccf165e9", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "623ff088-74c5-433c-bdba-51ca67b30836", "version": "2019-07-23T06:46:00.690112Z" }, - { + "analysis_file/ded3278c-98d4-43d1-81ce-5233f7123842": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "83893f92", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "f3e44bed-2460-4e2f-8dc6-e41d4e21510d", "version": "2019-07-23T06:46:01.081702Z" }, - { + "analysis_file/2e205f24-56cc-40ec-81b1-c17ebd0a5047": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "a7fc43c5", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "69b77a38-5c23-4429-94c1-b17d7a4fec5c", "version": "2019-07-23T06:46:01.422111Z" }, - { + "analysis_file/cc486886-d9a2-44e6-8bf3-84a84c035ff6": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "59bc0aad", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "08915e23-ccfe-4b46-a445-2f48630ae7a8", "version": "2019-07-23T06:46:01.821260Z" }, - { + "analysis_file/20ac4de0-bb12-4f99-9e54-bd6f284c741a": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "0d8cd1ff", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "2c701dff-a283-48f7-a67f-fd0708746605", "version": "2019-07-23T06:46:02.309624Z" }, - { + "analysis_file/d6ccfc37-bccb-463f-bd96-53accf9b5803": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "7ec55cf8", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "98e75dc0-0b26-41ed-b545-36e8b7d96df1", "version": "2019-07-23T06:46:02.789752Z" }, - { + "analysis_file/12c88fdb-2350-498c-a51c-6f93fad50621": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "f45bde01", "indexed": false, @@ -204,7 +205,7 @@ "uuid": "09695392-cf77-47df-b296-1003c20bea08", "version": "2019-07-23T06:46:03.189471Z" }, - { + "analysis_file/bf4431ba-80da-468c-852b-7dbe008519f6": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "0c5cd29d", "indexed": false, @@ -216,7 +217,7 @@ "uuid": "e6ef8ad5-928f-4cd2-b773-8e2d078e5d3e", "version": "2019-07-23T06:46:03.596186Z" }, - { + "analysis_file/4018b8da-201c-423b-a26a-737549674742": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "ea6b1cc9", "indexed": false, @@ -228,7 +229,7 @@ "uuid": "d20d0b30-8455-4bf5-ab03-ad430b279590", "version": "2019-07-23T06:46:03.975997Z" }, - { + "analysis_file/8be955e9-eb4e-4834-8576-0fd7ba1c672d": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "5a7101ed", "indexed": false, @@ -240,7 +241,7 @@ "uuid": "ce7dc85c-5745-4c7e-8f2c-433d5ef98ed0", "version": "2019-07-23T06:46:04.397849Z" }, - { + "analysis_file/291bc053-766d-4b04-aa69-53a7d6a05366": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "dccd7461", "indexed": false, @@ -252,7 +253,7 @@ "uuid": "e685cbab-3147-42e9-a8d3-68e33836bcda", "version": "2019-07-23T06:46:04.746479Z" }, - { + "analysis_file/80b4596c-4047-40f7-8e90-d7ba13c3aba4": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "89cf69cc", "indexed": false, @@ -264,7 +265,7 @@ "uuid": "e2c7fc43-37f1-46f6-abec-042005826967", "version": "2019-07-23T06:46:05.112784Z" }, - { + "analysis_file/bd8f069d-1b75-4f7d-b10a-55efe37e4625": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "1e098ffe", "indexed": false, @@ -276,7 +277,7 @@ "uuid": "44b60b61-703a-48a5-a545-46d5473e1af1", "version": "2019-07-23T06:46:05.486422Z" }, - { + "analysis_file/287203a8-b15c-4fc9-ade7-4bfa9b4928e7": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "f773b4da", "indexed": false, @@ -288,7 +289,7 @@ "uuid": "ae99c085-13d6-44a4-bb51-50541f17e527", "version": "2019-07-23T06:46:05.951288Z" }, - 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{ + "analysis_file/a66b12e3-22e0-46b5-8431-49cae2781fa3": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "bdc205dc", "indexed": false, @@ -3180,7 +3181,7 @@ "uuid": "f2791053-6c47-499b-abca-f39a8fd00c68", "version": "2019-07-23T06:47:52.923690Z" }, - { + "analysis_file/d4c479b7-3fa9-45f9-b5dd-d566c069e0b0": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "7f2f5dfe", "indexed": false, @@ -3192,7 +3193,7 @@ "uuid": "f3486d97-41ea-472a-9dde-aaf3545cd0d1", "version": "2019-07-23T06:47:53.309857Z" }, - { + "analysis_file/9ea49dbc-aeec-4c23-89ad-6bb19dc4f3f8": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "b1081c50", "indexed": false, @@ -3204,7 +3205,7 @@ "uuid": "0c11e393-794d-4a55-942e-fd50c596f301", "version": "2019-07-23T06:47:53.709271Z" }, - { + "analysis_file/0a06b519-54a2-4fe6-a0b9-ced484f2ee88": { "content-type": "application/json; dcp-type=data", "crc32c": "9a99ecc3", "indexed": false, @@ -3216,7 +3217,7 @@ "uuid": "834adf55-3e83-43a9-8ea9-af9ce5d98993", "version": "2019-07-23T06:47:54.151361Z" }, - { + "analysis_file/09e2872a-e14e-4278-90d9-0272bf674ade": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "57a3b717", "indexed": false, @@ -3228,7 +3229,7 @@ "uuid": "b9363e85-7be6-48c8-8790-c78667dbe609", "version": "2019-07-23T06:47:54.346452Z" }, - { + "analysis_file/4531af8b-472e-4305-8584-136a6139136e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "9c762390", "indexed": false, @@ -3240,7 +3241,7 @@ "uuid": "fc3e92d8-6c97-48e8-bd91-99512b0021e7", "version": "2019-07-23T06:47:54.704868Z" }, - { + "analysis_file/a21642da-c606-4318-9923-04fef26563c7": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "0206401a", "indexed": false, @@ -3252,7 +3253,7 @@ "uuid": "53297e9b-7b98-416e-abf0-50032c3f4add", "version": "2019-07-23T06:47:55.202986Z" }, - { + "analysis_file/cfe7e5fb-90ab-4a31-990f-ebae50e1ac55": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "99257cce", "indexed": false, @@ -3264,7 +3265,7 @@ "uuid": "8b333a35-0b8b-4d9b-8787-0980a7eea302", "version": "2019-07-23T06:47:55.980431Z" }, - { + "analysis_file/9e37e92f-fc60-4b1b-807a-b68b332ec42e": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "ed5bf4ca", "indexed": false, @@ -3276,7 +3277,7 @@ "uuid": "cacaaaad-4641-4d20-a0fa-4c8fef185954", "version": "2019-07-23T06:47:56.337114Z" }, - { + "analysis_file/0a138e45-159d-45ff-afe2-5615cd29e0c3": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "abafda96", "indexed": false, @@ -3288,7 +3289,7 @@ "uuid": "9be3470a-eca8-430a-97a3-66ca439f2e6f", "version": "2019-07-23T06:47:56.708480Z" }, - { + "analysis_file/4a4baaee-a014-4f01-8796-a78c53d26ff3": { "content-type": "application/json; dcp-type=data", "crc32c": "6d0d549c", "indexed": false, @@ -3300,7 +3301,7 @@ "uuid": "6f8fb6e8-3d16-4969-b063-5f294704319d", "version": "2019-07-23T06:47:57.047868Z" }, - { + "analysis_file/ddb54f6b-6286-443d-854e-5cbdd3e73ac9": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "c803cedd", "indexed": false, @@ -3312,7 +3313,7 @@ "uuid": "3caf15af-7a55-4315-bf8b-61fcdc56f5e4", "version": "2019-07-23T06:47:57.298066Z" }, - { + "analysis_file/82bdd527-5c90-4baa-9970-9067a2c1f7d1": { "content-type": "application/json; dcp-type=data", "crc32c": "267e1076", "indexed": false, @@ -3324,7 +3325,7 @@ "uuid": "3dca724e-c8a3-409f-8677-cc1e0d8f778d", "version": "2019-07-23T06:47:57.647335Z" }, - { + "analysis_file/c3feea3c-fcf6-46f5-93db-dd54433e3cf4": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "079024a6", "indexed": false, @@ -3336,7 +3337,7 @@ "uuid": "491234c2-baa0-4993-a567-49261d845624", "version": "2019-07-23T06:47:57.825885Z" }, - { + "analysis_file/ff3620c9-5c36-48c0-a4ec-937fd585636e": { "content-type": "application/json; dcp-type=data", "crc32c": "f629ec34", "indexed": false, @@ -3348,7 +3349,7 @@ "uuid": "5f243f46-c947-493d-a389-3356166a5707", "version": "2019-07-23T06:47:58.045247Z" }, - { + "analysis_file/e727ebf7-276b-4704-801d-cd2f3b81a5c5": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "fd9bdce9", "indexed": false, @@ -3360,7 +3361,7 @@ "uuid": "bf7b14e1-d60e-4a75-abd7-7288c632ab45", "version": "2019-07-23T06:47:58.214112Z" }, - { + "analysis_file/fab74ba6-81c8-4d8c-b8c3-9b82e31f5b9f": { "content-type": "application/json; dcp-type=data", "crc32c": "f35d7e55", "indexed": false, @@ -3372,7 +3373,7 @@ "uuid": "682d732e-eaec-4df4-b03c-1f43a4504951", "version": "2019-07-23T06:47:59.076189Z" }, - { + "analysis_file/2b264ded-d29d-43e2-8288-26ab7ab1406b": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "6d2df55e", "indexed": false, @@ -3384,7 +3385,7 @@ "uuid": "4dd0cd99-6901-49a4-b287-de8b21e31a93", "version": "2019-07-23T06:47:59.254679Z" }, - { + "analysis_file/86db2ba1-16df-4d73-afea-18148d4e7faa": { "content-type": "text/csv; dcp-type=data", "crc32c": "886c277d", "indexed": false, @@ -3396,7 +3397,7 @@ "uuid": "b9541a8c-8989-44fe-972b-0aa98a409f68", "version": "2019-07-23T06:47:59.463261Z" }, - { + "sequence_file/3f193e72-8efe-4c2a-ace1-79140ca36477": { "content-type": "application/gzip; dcp-type=data", "crc32c": "64e45095", "indexed": false, @@ -3408,7 +3409,7 @@ "uuid": "d879f732-d8d4-4251-a2ca-a91a852a034b", "version": "2019-07-18T21:29:49.534039Z" }, - { + "sequence_file/078b71eb-220a-43e5-a0fc-4f231e90f85f": { "content-type": "application/gzip; dcp-type=data", "crc32c": "7046ca69", "indexed": false, @@ -3420,7 +3421,7 @@ "uuid": "1e14d503-31b1-4db6-82ba-f8d83bd85b9b", "version": "2019-07-18T21:29:49.697974Z" } - ], + }, "metadata": { "cell_suspension/13eab62e-0038-4997-aeab-aa3192cc090e": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.1.1/cell_suspension", diff --git a/test/indexer/data/f79257a7-dfc6-46d6-ae00-ba4b25313c10.dss.hca.json b/test/indexer/data/f79257a7-dfc6-46d6-ae00-ba4b25313c10.dss.hca.json index b683e3716..c9cb07493 100644 --- a/test/indexer/data/f79257a7-dfc6-46d6-ae00-ba4b25313c10.dss.hca.json +++ b/test/indexer/data/f79257a7-dfc6-46d6-ae00-ba4b25313c10.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/6c946b6c-040e-45cc-9114-a8b1454c8d20": { "content-type": "application/gzip; dcp-type=data", "crc32c": "980453cc", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "f2b6c6f0-8d25-4aae-b255-1974cc110cfe", "version": "2018-09-14T12:33:43.720332Z" }, - { + "sequence_file/c86e42d7-854a-479b-a627-6be1b49c980c": { "content-type": "application/gzip; dcp-type=data", "crc32c": "d2417d49", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "f6608ce9-a570-4d5d-bd1f-407454958424", "version": "2018-09-14T12:33:45.304412Z" }, - { + "supplementary_file/eeea6514-bfdc-473b-a9ae-82b00ab30c38": { "content-type": "application/pdf; dcp-type=data", "crc32c": "847325b6", "indexed": false, @@ -36,7 +36,7 @@ "uuid": "156c15a3-3406-45d3-a25e-27179baf0c59", "version": "2018-09-14T12:33:46.866929Z" }, - { + "supplementary_file/89e313db-4423-4d53-b17e-164949acfa8f": { "content-type": "application/pdf; dcp-type=data", "crc32c": "b9364bfa", "indexed": false, @@ -48,7 +48,7 @@ "uuid": "5f9b45af-9a26-4b16-a785-7f2d1053dd7c", "version": "2018-09-14T12:33:47.012715Z" }, - { + "supplementary_file/bf7df45c-c2d5-49a8-8110-7e1f17ed0094": { "content-type": "application/pdf; dcp-type=data", "crc32c": "3658ec51", "indexed": false, @@ -60,7 +60,7 @@ "uuid": "0db87826-ea2d-422b-ba71-b15d0e4293ae", "version": "2018-09-14T12:33:47.221025Z" } - ], + }, "metadata": { "cell_suspension/0037c9eb-8038-432f-8d9d-13ee094e54ab": { "describedBy": "http://schema.staging.data.humancellatlas.org/type/biomaterial/8.6.1/cell_suspension", diff --git a/test/indexer/data/fa5be5eb-2d64-49f5-8ed8-bd627ac9bc7a.dss.hca.json b/test/indexer/data/fa5be5eb-2d64-49f5-8ed8-bd627ac9bc7a.dss.hca.json index 5dcaa6fb6..e4929de1a 100644 --- a/test/indexer/data/fa5be5eb-2d64-49f5-8ed8-bd627ac9bc7a.dss.hca.json +++ b/test/indexer/data/fa5be5eb-2d64-49f5-8ed8-bd627ac9bc7a.dss.hca.json @@ -1,6 +1,7 @@ { - "manifest": [ - { + "manifest": { + "analysis_file/bd1307b9-70b5-49e4-8e02-9d4ca0d64747": { + "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "1e03bc76", "indexed": false, @@ -12,7 +13,7 @@ "uuid": "9d95b445-e164-43fe-b6cb-3e23f9b3a820", "version": "2019-02-14T19:24:27.695139Z" }, - { + "analysis_file/cf3453a3-68fb-4156-bc3e-0f08f7e6512c": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -24,7 +25,7 @@ "uuid": "689e9d77-708d-4f02-b2a0-e5cac72ae2ab", "version": "2019-02-14T19:24:27.995928Z" }, - { + "analysis_file/234b0359-3853-4df4-898f-5182f698d48b": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "e0b2ceae", "indexed": false, @@ -36,7 +37,7 @@ "uuid": "94677e48-adf8-4ea3-a42b-5a9ce8853b21", "version": "2019-02-14T19:24:28.245144Z" }, - { + "analysis_file/d95392c5-1958-4825-9076-2a9c130c53f3": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "461eb1e9", "indexed": false, @@ -48,7 +49,7 @@ "uuid": "d15b6930-24cb-4217-a963-bf611d48c6e7", "version": "2019-02-14T19:24:28.654694Z" }, - { + "analysis_file/b9609367-7006-4055-8815-1bad881a1502": { "content-type": "text/csv; dcp-type=data", "crc32c": "53e5ecf8", "indexed": false, @@ -60,7 +61,7 @@ "uuid": "7807d073-e9dd-4f1f-8053-b89b4d12ebfd", "version": "2019-02-14T19:24:29.157180Z" }, - { + "analysis_file/ebb2ec91-2cd0-4ec4-ba2b-5a6d6630bc5a": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "8487a5ae", "indexed": false, @@ -72,7 +73,7 @@ "uuid": "0fff97fe-c879-421a-a8d4-f9c5e995b21b", "version": "2019-02-14T19:24:29.395814Z" }, - { + "analysis_file/1ab612ca-2a5a-4443-8004-bb5f0f784c67": { "content-type": "application/gzip; dcp-type=data", "crc32c": "c3921ecb", "indexed": false, @@ -84,7 +85,7 @@ "uuid": "9ea1b54e-0679-4cdc-93ab-c584110168ac", "version": "2019-02-14T19:24:30.435350Z" }, - { + "analysis_file/34c64244-d3ed-4841-84b7-aa4cbb9d794b": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "466576fa", "indexed": false, @@ -96,7 +97,7 @@ "uuid": "432b5918-90b1-4624-abe3-f6a7c83010a9", "version": "2019-02-14T19:24:32.112522Z" }, - { + "analysis_file/71710439-3864-4fc6-bc48-ca2ac90f7ccf": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "b5e461a4", "indexed": false, @@ -108,7 +109,7 @@ "uuid": "c2e39ef9-91a8-43a0-9600-d05819e30213", "version": "2019-02-14T19:24:32.795784Z" }, - { + "analysis_file/2ab5242e-f118-48e3-afe5-c2287fa2e2b1": { "content-type": "text/html; dcp-type=data", "crc32c": "acf47b9f", "indexed": false, @@ -120,7 +121,7 @@ "uuid": "4f99fb32-9aa4-49cf-b4af-244a804c1259", "version": "2019-02-14T19:24:33.308106Z" }, - { + "analysis_file/6da39577-256d-43fd-97c4-a3bedaa54273": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7c54ea3d", "indexed": false, @@ -132,7 +133,7 @@ "uuid": "eada050f-188b-409b-bbf3-8d586d24dd59", "version": "2019-02-14T19:24:33.996677Z" }, - { + "analysis_file/86a93e19-eb89-4c27-8b64-006f96bb2c83": { "content-type": "text/tab-separated-values; dcp-type=data", "crc32c": "7571fac9", "indexed": false, @@ -144,7 +145,7 @@ "uuid": "efbe3d47-8089-4685-835c-f5af0227c31f", "version": "2019-02-14T19:24:34.225601Z" }, - { + "analysis_file/0f858ddb-6d93-404e-95fd-0c200921dd40": { "content-type": "application/octet-stream; dcp-type=data", "crc32c": "d04a1146", "indexed": false, @@ -156,7 +157,7 @@ "uuid": "c508f1f3-dc97-4378-8e81-1586a881f354", "version": "2019-02-14T19:24:34.551509Z" }, - { + "sequence_file/7df5d656-43cb-49f9-b81d-86cca3c44a65": { "content-type": "application/gzip; dcp-type=data", "crc32c": "da1a6040", "indexed": false, @@ -168,7 +169,7 @@ "uuid": "34e5f1ed-299e-401d-a62b-abad1a4ad2ca", "version": "2019-02-14T18:34:20.147713Z" }, - { + "sequence_file/acd7d986-73ab-4d0b-9ead-377f3a2d646d": { "content-type": "application/gzip; dcp-type=data", "crc32c": "0eee0a0a", "indexed": false, @@ -180,7 +181,7 @@ "uuid": "66ea0038-2481-4c53-8e2f-229b03851701", "version": "2019-02-14T18:34:20.351186Z" }, - { + "sequence_file/f9a78d6a-7c80-4c45-bedf-4bc152dc172d": { "content-type": "application/gzip; dcp-type=data", "crc32c": "51ffe105", "indexed": false, @@ -192,7 +193,7 @@ "uuid": "1b8bd5ec-f0c2-45e5-8fc1-455b48d9b5d6", "version": "2019-02-14T18:34:20.730308Z" } - ], + }, "metadata": { "cell_suspension/a9ae9936-c11b-4195-b63a-fa6cb9c78e4c": { "describedBy": "https://schema.staging.data.humancellatlas.org/type/biomaterial/9.0.0/cell_suspension", diff --git a/test/indexer/data/fce68057-b0f0-5d11-b9a7-30e8fa3259a8.dss.hca.json b/test/indexer/data/fce68057-b0f0-5d11-b9a7-30e8fa3259a8.dss.hca.json index d0772b9d5..8590fd87a 100644 --- a/test/indexer/data/fce68057-b0f0-5d11-b9a7-30e8fa3259a8.dss.hca.json +++ b/test/indexer/data/fce68057-b0f0-5d11-b9a7-30e8fa3259a8.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/99985ea4-d29e-4357-9879-99440a002b49": { "name": "FCAImmP7316894_S1_L001_I1_001.fastq.gz", "uuid": "01824e76-505c-4e99-9ffd-bc1b5f56f726", "version": "2020-08-13T10:24:33.604000Z", @@ -13,7 +13,7 @@ "sha256": "5f6e2b3c8d6e00fd6dd51c301d1c97f2536a7887963e0365f215cd0f96d34f97", "s3_etag": "2a0329a71e83818c5f8e51fa091c5d20-39" }, - { + "sequence_file/601bacd5-c250-4dd3-a83d-c9f31a1b0dd8": { "name": "FCAImmP7352193_S1_L001_R2_001.fastq.gz", "uuid": "0526e3df-0747-40fb-b4be-99c8813deefd", "version": "2020-08-13T10:24:34.163000Z", @@ -26,7 +26,7 @@ "sha256": "5eb3a3d3cd1d20a58fef44967e43cc3bab983017fed83619ce583a190f35fc0f", "s3_etag": "40155c79aec333af98e27949b87fae21-445" }, - { + "sequence_file/455c6c50-9424-4dac-b67c-1be48276d5b5": { "name": "FCAImmP7316890_S1_L001_R1_001.fastq.gz", "uuid": "085e5f88-ab09-4d69-bc14-afa71e1ae17c", "version": "2020-08-13T10:24:33.458000Z", @@ -39,7 +39,7 @@ "sha256": "2c1bbc2263124703a0c818aa4c75f6cfaedd1b567ad15b80fe0c2d2d3004d20e", "s3_etag": "bb820841d613f555c098abebd67a620d-120" }, - { + "analysis_file/63bee9b4-8743-5a13-b144-80cf68313083": { "name": "cfa1e5da-607e-49b6-aa0d-8f43702b971f.bam", "uuid": "0a80f21f-3212-596b-9367-f7211c554c7d", "version": "2021-02-09T10:00:00.000000Z", @@ -50,7 +50,7 @@ "crc32c": "f9e695e2", "sha256": "f3f032bc303a9b2cba8ce26f69370f2e1565ab2276a9140e4abcba3721c5e39c" }, - { + "analysis_file/07a81052-3964-5b08-8f2d-066c1e29de7d": { "name": "1248ead2-3dd4-43fe-9f7c-9609ed77d9c2.loom", "uuid": "0aa3a582-3905-5cba-9dd1-d3cf58be18ce", "version": "2021-02-09T08:34:58.000000Z", @@ -61,7 +61,7 @@ "crc32c": "792b4a5d", "sha256": "b4d1cf6d019cfb4f27e501d567bd8e9543216037d18a455e32b2012f51dc89d2" }, - { + "sequence_file/b61e4f40-1742-4bbb-a20d-78a934c5f8de": { "name": "FCAImmP7352192_S1_L001_I1_001.fastq.gz", "uuid": "0c3e7565-d5bc-44ed-8b1c-a9446150f274", "version": "2020-08-13T10:24:34.100000Z", @@ -74,7 +74,7 @@ "sha256": "eee0705784755c472ffe202927e18264aa1664c991c5a3483a3fa6f5216a9aed", "s3_etag": "bed37bb5bb430de9fa47a5e0b4c0bbcc-39" }, - { + "analysis_file/07a18873-6df1-57a8-848c-980bfa29fbf5": { "name": "3381994d-5624-4f5f-a574-01ad099c448c.loom", "uuid": "0c410012-5563-5e9d-9841-a0232b69d43f", "version": "2021-02-09T08:26:46.000000Z", @@ -85,7 +85,7 @@ "crc32c": "9a0339f5", "sha256": "a06fa80743f30442e6fae4eb7d5e85354d11459783b2b52a84ffc4996b85825d" }, - 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{ + "sequence_file/dfe9cbbb-cf19-4e2d-bd3c-70e0d9235f67": { "name": "FCAImmP7277561_S1_L001_R2_001.fastq.gz", "uuid": "26684c18-6ba0-4e9b-98f2-0a4b6f7f4a86", "version": "2020-08-13T10:24:33.109000Z", @@ -355,7 +355,7 @@ "sha256": "a13f6d951cb5987ffdc9e7959f2a5336f1b438161a81d79b5fbcfbd6db894fe4", "s3_etag": "bc5c744a4a8291bd7be93c8a7adfc15f-411" }, - { + "sequence_file/7ee8e5aa-5faa-4491-bd66-150e202974dd": { "name": "FCAImmP7198630_S1_L001_R1_001.fastq.gz", "uuid": "285e146c-92b8-490c-b5e5-c8c24daa8ad2", "version": "2020-08-13T10:24:32.686000Z", @@ -368,7 +368,7 @@ "sha256": "efdb3d45688d1a0e714fbed560e1e4cd6a26878c4249e5436ac55de1de6eca3e", "s3_etag": "0eac6bcaca393be153cb08f62c55aeeb-122" }, - { + "analysis_file/bbb02342-bad3-5d6c-89fa-1cbaf2e7b5dd": { "name": "b49fb5d4-6f31-4b7d-827e-bc09ed30a167.bam", "uuid": "2ee42e3a-73ae-5632-9a22-11b6a0fdced8", "version": "2021-02-09T09:07:07.000000Z", @@ -379,7 +379,7 @@ "crc32c": "b623c9bb", "sha256": "9cf2f6304126ce30855d38ea7f6b04493bb0f82a1b60493c921fbdcfcd7615f7" }, - { + "sequence_file/835ec088-c1a5-4b0c-897c-22bc92950587": { "name": "FCAImmP7316889_S1_L001_R1_001.fastq.gz", "uuid": "2fc7b43d-2351-428d-94f9-10a25c165f1a", "version": "2020-08-13T10:24:33.403000Z", @@ -392,7 +392,7 @@ "sha256": "af7641eda6bdad4c6cb1e54dc07e63297b4bfd7659227e48c1972b5ea8ffac29", "s3_etag": "6cb68f1add2e32098bab6e8e7880fbd4-121" }, - { + "sequence_file/4f91ed04-d045-4904-a78e-103294d4f5e9": { "name": "FCAImmP7462237_S1_L001_R2_001.fastq.gz", "uuid": "312ecb1d-d94c-437b-9f36-e2ccf949fd79", "version": "2020-08-13T10:24:34.315000Z", @@ -405,7 +405,7 @@ "sha256": "3e73232634f1e8f6e25a2f44a75f8d158c725b6b074840f0c08dbe469817b1c4", "s3_etag": "7c74cb715edf9886f327ee808765d5c3-458" }, - { + "analysis_file/0db36828-3fae-5bd2-b052-ae63b88693d9": { "name": "2d0d630a-58dd-42f7-bd7e-579ebec98d48.loom", "uuid": "31658494-9514-5169-84bf-0eb0620557f0", "version": "2021-02-09T07:52:42.000000Z", @@ -416,7 +416,7 @@ "crc32c": "fa7dddf4", "sha256": "fde8ba0d033beb01d3f33f2bee3044b15f745bb4de16f9bb358f96da9c1b6330" }, - 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{ + "sequence_file/96cbabdb-30b4-4c71-9250-bb7efcd9ee1e": { "name": "FCAImmP7579222_S1_L001_R1_001.fastq.gz", "uuid": "7b2d444d-65f1-43e2-848d-22bcd2774c96", "version": "2020-08-13T10:24:35.358000Z", @@ -1229,7 +1229,7 @@ "sha256": "1283217fe012be0fa985627b7dbfec3adf1da5704252fce7177b473c3bb1007c", "s3_etag": "f656c16c74294bc629ffb3a8426c6f09-129" }, - { + "sequence_file/ee9ad501-69c5-49df-89d2-32ea89591634": { "name": "FCAImmP7316894_S1_L001_R1_001.fastq.gz", "uuid": "7b7015d5-5915-42d8-9427-7890d9e76282", "version": "2020-08-13T10:24:33.616000Z", @@ -1242,7 +1242,7 @@ "sha256": "be30defc72b614f84e46fbd512b356870d3694e2dea0ab3023df97cd98450d50", "s3_etag": "6a92546f1cd5d58892af69dea7621752-121" }, - { + "analysis_file/2d253fef-4538-511a-a960-bd999afeecf4": { "name": "c301901f-95cd-4a3e-a4df-761fa21e92af.loom", "uuid": "7d0d9872-cdea-5f19-956e-eb47032a512a", "version": "2021-02-09T08:14:41.000000Z", @@ -1253,7 +1253,7 @@ "crc32c": "d6563e51", "sha256": "0fca305a7e7793e9219cbe076e333768f3f8608b9cd7cd701f82b83dcd12aa22" }, - 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{ + "analysis_file/b7f87bc7-bb85-5bd8-beae-1d14cd6846ef": { "name": "b7914794-f8a7-4fba-bb5b-10536eac7d8b.loom", "uuid": "a5a6d033-de94-515c-a742-68e6e1188c2c", "version": "2021-02-09T08:52:45.000000Z", @@ -1600,7 +1600,7 @@ "crc32c": "ead979ce", "sha256": "382ad9e9d0545e42d8ea800cf7d4c0fe91a14cb432e58fcc86a13b3f9414b082" }, - { + "sequence_file/39c59048-bac9-4b5b-935b-75b150931f41": { "name": "FCAImmP7277561_S1_L001_R1_001.fastq.gz", "uuid": "a7708bfc-0d3d-4c87-bea3-34790a7aad2c", "version": "2020-08-13T10:24:33.086000Z", @@ -1613,7 +1613,7 @@ "sha256": "9ca0b9a333dabc8c1a1de31efb0b4f10f1628cb0338b1db203daef14957314bc", "s3_etag": "c36b18744bd09a554f8cb80179174de3-119" }, - { + "sequence_file/384733f9-328f-4b3f-b201-9489ae09f5de": { "name": "FCAImmP7277561_S1_L001_I1_001.fastq.gz", "uuid": "aa7c5481-5b46-4267-bcfa-0940dad1bf1c", "version": "2020-08-13T10:24:33.060000Z", @@ -1626,7 +1626,7 @@ "sha256": "4fe5f933dec582fa48bf060dc5ed972b74fd1a2dc97dff1a5a517f1f534dfb76", "s3_etag": "a086ad56c8942d6fb68b48ca64ca5720-38" }, - { + "sequence_file/afe45faa-e5e1-4cf8-8d79-4092dca736bd": { "name": "FCAImmP7179363_S1_L001_R1_001.fastq.gz", "uuid": "ab5743e9-3eef-48c8-83f4-8458071fb7f4", "version": "2020-08-13T10:24:32.503000Z", @@ -1639,7 +1639,7 @@ "sha256": "d917c381ac2a61ad8e9bf1a75c410ed9ce1a8d4ddd0b2e4938cd85f98a2d4615", "s3_etag": "4d7d8122f05534572e160a9c489ddf3c-121" }, - { + "analysis_file/4a28b164-2d5a-5232-946a-ac70276036b5": { "name": "08b799a0-59d8-4c69-87b3-fd239aef4197.bam", "uuid": "ab887fca-e9b8-529c-9fe2-93595435858d", "version": "2021-02-09T10:23:06.000000Z", @@ -1650,7 +1650,7 @@ "crc32c": "e682591d", "sha256": "5826d5b4d61d940252f23006100da6a6e5e77eada00b4fbaa124f8aaec1f8822" }, - { + "sequence_file/38b67b47-7ef3-4e9e-88e1-3a8376769eb0": { "name": "FCAImmP7579210_S1_L001_I1_001.fastq.gz", "uuid": "ad5b6061-910a-44d0-b8e6-7294d8b9e6d7", "version": "2020-08-13T10:24:35.268000Z", @@ -1663,7 +1663,7 @@ "sha256": "deaa8e19d29aba886f3f514d9e43ccad547c9205173b1b34e3af205d781ff791", "s3_etag": "fb9714e64339d2f9029497d089bed4ab-42" }, - 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{ + "sequence_file/a428e47e-0081-497b-9c8a-7c852f4eb103": { "name": "FCAImmP7579211_S1_L001_R2_001.fastq.gz", "uuid": "d6dea6fc-64af-4374-b6d1-383d51aaa00a", "version": "2020-08-13T10:24:35.333000Z", @@ -2098,7 +2098,7 @@ "sha256": "e1fb69509c1788b77b8e280f6c15f9af86a7482de1953681163286a25b833172", "s3_etag": "ec798f789a705a84c15047088574b1c4-414" }, - { + "sequence_file/f683fadf-dd8c-4cfe-ae8b-34e3af5b74a1": { "name": "FCAImmP7316895_S1_L001_R1_001.fastq.gz", "uuid": "d79ff5a5-7510-4fa7-9ea1-782c6dc09271", "version": "2020-08-13T10:24:33.652000Z", @@ -2111,7 +2111,7 @@ "sha256": "58a995c7143c81535dd7a7d82a2000ab346bc537aa0823118986da45c9ddc089", "s3_etag": "6b132d0973c5afa226e35f2cf045d0c5-121" }, - { + "sequence_file/c27ebc26-f0b4-4f42-8b10-061fb04f77bd": { "name": "FCAImmP7316890_S1_L001_R2_001.fastq.gz", "uuid": "db5c9d93-73ce-400f-809a-cf8649a0a3bb", "version": "2020-08-13T10:24:33.471000Z", @@ -2124,7 +2124,7 @@ "sha256": "6b5b0565bae4d0172d2a35b953961b3708798ba10a98c0c6864b69c7b266efba", "s3_etag": "956bbe3a0913e93ca54afeb3524e0e90-436" }, - { + "analysis_file/d8146d19-442a-5dbe-a075-b3a1ef0ebf07": { "name": "bc5ba4f6-a3f1-4156-830f-11228df251bc.loom", "uuid": "dbde50d2-6912-59a2-82b0-3b4014dc988c", "version": "2021-02-09T07:11:23.000000Z", @@ -2135,7 +2135,7 @@ "crc32c": "56d63318", "sha256": "78cdef9ebfa842d462b6982bcf2399355fa01f121e47d205143165777b604826" }, - { + "analysis_file/c5ab8014-5630-5ce5-9aaf-247e12d4ef6d": { "name": "3f20a83f-f01c-41f2-acaf-3c111dfa5465.bam", "uuid": "df1913aa-439c-587d-8192-5e2e66bc5262", "version": "2021-02-09T09:38:19.000000Z", @@ -2146,7 +2146,7 @@ "crc32c": "7396296b", "sha256": "0881849b9308290ae3a62ac7606ec920678e77c8f2350ecbc33430d14bc2c889" }, - { + "analysis_file/4a302268-f155-5a27-b164-dff6f1fc78fa": { "name": "37925a3b-3bce-4876-bb29-745922b2c972.loom", "uuid": "dfd63958-121b-54a8-9b8b-707f3e28d3da", "version": "2021-02-09T08:21:16.000000Z", @@ -2157,7 +2157,7 @@ "crc32c": "d45bc865", "sha256": "bfce44110db3cf10828073373c12502cc102405254549261ef2c2d29473539e2" }, - { + "sequence_file/6a512fd9-3942-4497-87fd-977d2a243b1c": { "name": "FCAImmP7462239_S1_L001_R1_001.fastq.gz", "uuid": "e29a9b1c-1ea6-4774-876f-765c7ac65d02", "version": "2020-08-13T10:24:34.377000Z", @@ -2170,7 +2170,7 @@ "sha256": "63bfb59ddcd47b03938d55ccc71852512372787409c146aba1f344ec7b1a7bf5", "s3_etag": "93dfce13f90811593e344eba5c3d094a-128" }, - { + "sequence_file/97ab1a9b-43d0-443d-b25c-228f79cb5666": { "name": "FCAImmP7277552_S1_L001_I1_001.fastq.gz", "uuid": "e48d6415-0b7b-4e06-9c7b-861f33c1f1c7", "version": "2020-08-13T10:24:32.834000Z", @@ -2183,7 +2183,7 @@ "sha256": "45e12661114a325951c1d9cc3a333adb36cbf88e85b60575a2ab92472b2c875e", "s3_etag": "86be2e843bc4fed1910a203d7062693e-37" }, - { + "sequence_file/76f76203-8b14-4a33-8a0d-d7687d887772": { "name": "4834STDY7038750_S1_L001_R2_001.fastq.gz", "uuid": "e512c10b-854a-4c57-8c56-c84c84875664", "version": "2020-08-13T10:24:32.363000Z", @@ -2196,7 +2196,7 @@ "sha256": "5ab45dfdbe7fe42d1bafb8aae280c8375bd23d4dbf9a304a78763ef1e705a815", "s3_etag": "14354e647d55ee3299f376099ef1bb22-641" }, - { + "analysis_file/8f3ed51f-9369-59ac-a2bc-70e1af25d169": { "name": "27e030cc-b89e-41fc-b0c8-c3258a4b2c6e.loom", "uuid": "e54680ad-0ebf-50cd-bf66-8d7b888af34c", "version": "2021-02-09T09:13:43.000000Z", @@ -2207,7 +2207,7 @@ "crc32c": "d25858a3", "sha256": "319f9c6ea44f0fb363e2fdd34ecd82cb998997f2f0b9f4abb777b7d550ba0e88" }, - { + "sequence_file/529e093e-c122-4939-8264-993ad651efd7": { "name": "FCAImmP7462237_S1_L001_R1_001.fastq.gz", "uuid": "e5ca2d0e-2fd8-4a89-88af-ad54c5f36290", "version": "2020-08-13T10:24:34.304000Z", @@ -2220,7 +2220,7 @@ "sha256": "145ea0e8c692c4322472d16af144e876e056d3c88a5cf00f327de25af1f665de", "s3_etag": "3c08f55d1cfce81e74b27d01e6a89e6e-127" }, - { + "sequence_file/75017000-be20-4f58-91ea-abaf63344959": { "name": "FCAImmP7277553_S1_L001_R2_001.fastq.gz", "uuid": "e7bd55f0-f6b6-4bfc-9395-35297fffd7d4", "version": "2020-08-13T10:24:32.893000Z", @@ -2233,7 +2233,7 @@ "sha256": "6174cc2b36f0a07e671f7013cde66093c7c7acdffa5e5a2912ce1a344862194b", "s3_etag": "35c4a30aab199f4974cdf937ea7a2de7-399" }, - { + "sequence_file/dbe117fc-c5ee-4347-bb8a-1a3fb9c89895": { "name": "FCAImmP7198630_S1_L001_R2_001.fastq.gz", "uuid": "e7c8ff09-e97d-4b2e-8892-49cabbacb4c2", "version": "2020-08-13T10:24:32.698000Z", @@ -2246,7 +2246,7 @@ "sha256": "afa3a5036ffcf985490177857aaa7316e1848be6a5eef8fa87a904c7da8aa312", "s3_etag": "5b167112db97d9eeea30b67f44481d58-442" }, - { + "analysis_file/3aa80a42-646a-5953-afe6-b177a78297df": { "name": "08b799a0-59d8-4c69-87b3-fd239aef4197.loom", "uuid": "e85fcce7-59a6-593d-a52a-d25b47fafbfe", "version": "2021-02-09T08:37:16.000000Z", @@ -2257,7 +2257,7 @@ "crc32c": "f99f079e", "sha256": "889cb58651c7ec75e50c040081ed3bad5f81cb731e7f791e282060b310e9e611" }, - { + "analysis_file/c18f9014-7086-5216-a73a-e37af51f2bbb": { "name": "fetal-development-human-liver-10XV2.loom", "uuid": "e9ac4222-8586-5d9b-8c6d-ba1b58d75a1d", "version": "2021-02-16T04:18:18.000000Z", @@ -2268,7 +2268,7 @@ "crc32c": "42dd4073", "sha256": "9d5294b0fe71b21cd03f1516111c53e1143a23260eaa32871e1a244c0c23b735" }, - { + "sequence_file/4e7c6725-5d49-4ed6-9a5f-b7d0eaf75469": { "name": "FCAImmP7462238_S1_L001_R2_001.fastq.gz", "uuid": "ea737bae-7b34-4fb1-96a0-c3375446206c", "version": "2020-08-13T10:24:34.352000Z", @@ -2281,7 +2281,7 @@ "sha256": "a04b3bfd947c7bdaa1109383e77bec52fb81c27a2339ee51252e2960469508f6", "s3_etag": "2734ac545cc9ae534ee2d2465a60e3b1-473" }, - { + "analysis_file/00dbea45-4e4d-5220-985e-afd8dcfce0b5": { "name": "536ba4f7-6694-4a31-8df1-0e6668ed10da.bam", "uuid": "eb8efbdd-147c-5206-b23c-f561d07335f7", "version": "2021-02-09T09:09:26.000000Z", @@ -2292,7 +2292,7 @@ "crc32c": "00dc9ae8", "sha256": "60218362040d530b23fa8ae1275f1917836872f7b533e866509b0a0bf673c472" }, - { + "sequence_file/785275c2-08e7-486f-bed5-850993b704d3": { "name": "FCAImmP7277553_S1_L001_R1_001.fastq.gz", "uuid": "ebde6cd6-26b6-40d6-9fa4-efe43d99ee8f", "version": "2020-08-13T10:24:32.882000Z", @@ -2305,7 +2305,7 @@ "sha256": "4399a1cce3f228de88afe1c8dbb9abd5dc403ae81bd1bb8bcc881fbdd0379a3f", "s3_etag": "a1f4adadc1ef311fe58a077c39e1414a-117" }, - { + "analysis_file/a1dbe553-ade6-5ce4-b9f9-77c740891c97": { "name": "1248ead2-3dd4-43fe-9f7c-9609ed77d9c2.bam", "uuid": "ecfd0cb5-5755-5852-b84f-dcaad39a6ddc", "version": "2021-02-09T09:18:58.000000Z", @@ -2316,7 +2316,7 @@ "crc32c": "e26ad592", "sha256": "37e9cf42e9e91569c0f7d475aee6d31a18404fe1c2bc47dd9bdd7e49e63dc486" }, - { + "analysis_file/450befbb-21c9-5b53-a7b9-38b517cebe76": { "name": "9bb08d39-3957-4ff7-a20d-cc45a1cb38ab.bam", "uuid": "ee40ec89-7cd0-5a9f-9f21-a1a4d69f5a1d", "version": "2021-02-09T10:33:14.000000Z", @@ -2327,7 +2327,7 @@ "crc32c": "b42f4582", "sha256": "1e853bdb1dab96c62e3ed8959e339cb7e07ee50e9e8a929263ff8ae961e13b43" }, - { + "sequence_file/c79e49e1-62b2-41c4-a3eb-96bbe01a2ed4": { "name": "FCAImmP7352192_S1_L001_R2_001.fastq.gz", "uuid": "f1a64a47-3ed4-4570-99d7-ea6194826b07", "version": "2020-08-13T10:24:34.125000Z", @@ -2340,7 +2340,7 @@ "sha256": "fbb673e8455036e9bc7cbd50918cb5d513a9178040b5f11fc9c88ad9b961aaab", "s3_etag": "fa422f75cc7b67358c003577ebb1cd33-424" }, - { + "analysis_file/e8cb5e82-22fa-5e54-984e-3d2e4b91a100": { "name": "e23d96b7-a271-403e-a29e-b2bdb1949070.bam", "uuid": "f264de1c-35b3-5f4e-8d6f-f3a11bd30e93", "version": "2021-02-09T07:42:39.000000Z", @@ -2351,7 +2351,7 @@ "crc32c": "7602d429", "sha256": "d60e8996ece7a99f830a0be167f0abeea61ef5e8c267d2afbf56a318c4a88052" }, - { + "analysis_file/853ce2df-ac1e-5d3b-aa74-00ff4eab33c2": { "name": "0ceed66e-513f-450f-89e9-3206f4485cdf.bam", "uuid": "f2b68b09-0776-5913-a34a-0944942c2b87", "version": "2021-02-09T08:42:46.000000Z", @@ -2362,7 +2362,7 @@ "crc32c": "4133c641", "sha256": "af6d158d5d21f2c91cfceece4136a9e27a108eb24dcf35d8125fc9c7f009cfd2" }, - { + "sequence_file/9a4277c3-806b-4906-a777-613f01a51003": { "name": "FCAImmP7277560_S1_L001_R2_001.fastq.gz", "uuid": "f2fa48aa-5197-40a8-9c2a-c75c5c5f7264", "version": "2020-08-13T10:24:33.031000Z", @@ -2375,7 +2375,7 @@ "sha256": "b22b52d946aa4dc57e658fdde3457d35766a1d786f9426d24c5ba5abea08a940", "s3_etag": "a9936256470c5398bb755cc85ccc35c8-399" }, - { + "sequence_file/41ae7f5d-67e9-4bc8-a844-262a9dea9b96": { "name": "4834STDY7002882_S1_L001_R2_001.fastq.gz", "uuid": "f706178d-1afd-4bbb-bb69-12645ec038a6", "version": "2020-08-13T10:24:32.221000Z", @@ -2388,7 +2388,7 @@ "sha256": "5a1aacf952fafcf36435e160cff4b01af9e3fead34c1a42c2f31425e4a1d0583", "s3_etag": "a52f448699def4372fbf925086ddaebd-614" }, - { + "sequence_file/23a28752-d0c7-4a3c-8548-acc8ddc26af4": { "name": "4834STDY7038751_S1_L001_R1_001.fastq.gz", "uuid": "f8dcbc35-bb0b-4bd4-ae8d-9be72b39dc16", "version": "2020-08-13T10:24:32.387000Z", @@ -2401,7 +2401,7 @@ "sha256": "489b4d534d89a34ace6e4abdf14fa02695f3e2b94d11e7c54a0ebfe513385a00", "s3_etag": "f98111cdd543b8f8afdace9ad3aee90d-457" }, - { + "sequence_file/8a62b078-1656-4145-83ee-a54b74b1f566": { "name": "FCAImmP7528289_S1_L001_R2_001.fastq.gz", "uuid": "f9173d91-b535-40f1-9937-2d0f00f4432f", "version": "2020-08-13T10:24:35.073000Z", @@ -2414,7 +2414,7 @@ "sha256": "b28d0729f18c82ac3c3e66f31bae44fb386f920e65e01cdef4f0efc549d7bb4a", "s3_etag": "e158c26a5a0880ddb27903e34882a7a2-437" }, - { + "sequence_file/f895f666-e3ed-4a7e-a7f5-42586a6244ea": { "name": "FCAImmP7462238_S1_L001_I1_001.fastq.gz", "uuid": "f97aef9d-20fe-4872-88d1-9b44f174a16c", "version": "2020-08-13T10:24:34.328000Z", @@ -2427,7 +2427,7 @@ "sha256": "b4cfabb071a6ba97b64b19a9c5e1718ea9a41fd44b1697e19b0b388fd2444fbe", "s3_etag": "710cf93f73aeacad79e964a13684ba2d-42" }, - { + "analysis_file/c31aecba-db6a-5229-a729-66269d90ee8a": { "name": "0ceed66e-513f-450f-89e9-3206f4485cdf.loom", "uuid": "fa5185cb-e48d-5ab8-90b8-5499c3a725b6", "version": "2021-02-09T08:11:03.000000Z", @@ -2438,7 +2438,7 @@ "crc32c": "4482e678", "sha256": "c223e4d5e42e03dbc6fc3c0d05bb58acbdcad8e02b1169631fb5fe9bb6fd9ea1" }, - { + "sequence_file/82fc4ead-bf34-4834-91ed-cb6ec1717baa": { "name": "FCAImmP7316895_S1_L001_R2_001.fastq.gz", "uuid": "fd5a2b33-eebc-41e3-b880-a39736a47a7c", "version": "2020-08-13T10:24:33.664000Z", @@ -2451,7 +2451,7 @@ "sha256": "6f492eed4c3dce56c23be051c2280c0d02082764cc12eee0d78ec053575e33c8", "s3_etag": "01f727a9513e37db4f9127dddaa83443-439" } - ], + }, "metadata": { "analysis_file/00dbea45-4e4d-5220-985e-afd8dcfce0b5": { "describedBy": "https://schema.humancellatlas.org/type/file/6.2.0/analysis_file", diff --git a/test/indexer/data/ffac201f-4b1c-4455-bd58-19c1a9e863b4.dss.hca.json b/test/indexer/data/ffac201f-4b1c-4455-bd58-19c1a9e863b4.dss.hca.json index d3055ed30..531a7b240 100644 --- a/test/indexer/data/ffac201f-4b1c-4455-bd58-19c1a9e863b4.dss.hca.json +++ b/test/indexer/data/ffac201f-4b1c-4455-bd58-19c1a9e863b4.dss.hca.json @@ -1,6 +1,6 @@ { - "manifest": [ - { + "manifest": { + "sequence_file/4015da8b-18d8-4f3c-b2b0-54f0b77ae80a": { "content-type": "application/gzip; dcp-type=data", "crc32c": "49a9085f", "indexed": false, @@ -12,7 +12,7 @@ "uuid": "a8b8479d-cfa9-4f74-909f-49552439e698", "version": "2019-10-09T17:22:51.560099Z" }, - { + "sequence_file/fa17159e-52ec-4a88-80cf-a3be5e2e9988": { "content-type": "application/gzip; dcp-type=data", "crc32c": "dd098625", "indexed": false, @@ -24,7 +24,7 @@ "uuid": "7338932d-edc9-49a9-8dbf-e459a465800f", "version": "2019-10-09T17:22:52.628550Z" } - ], + }, "metadata": { "cell_suspension/0432e9a5-604f-4cb7-8571-014eb5fd8ba2": { "describedBy": "https://schema.humancellatlas.org/type/biomaterial/13.3.0/cell_suspension", diff --git a/test/indexer/test_indexer.py b/test/indexer/test_indexer.py index df3c51516..34c395d77 100644 --- a/test/indexer/test_indexer.py +++ b/test/indexer/test_indexer.py @@ -583,7 +583,7 @@ def _patch_bundle(self, bundle: Bundle) -> str: new_file_uuid = str(uuid4()) bundle.manifest = deepcopy(bundle.manifest) file_name = '21935_7#154_2.fastq.gz' - for file in bundle.manifest: + for file in bundle.manifest.values(): if file['name'] == file_name: old_file_uuid = file['uuid'] file['uuid'] = new_file_uuid diff --git a/test/integration_test.py b/test/integration_test.py index 9807d488e..9ab465812 100644 --- a/test/integration_test.py +++ b/test/integration_test.py @@ -1939,7 +1939,7 @@ def _test_catalog(self, catalog: config.Catalog): metadata = bundle_json['metadata'] links = bundle_json['links'] stitched = bundle_json['stitched'] - self.assertIsInstance(manifest, list) + self.assertIsInstance(manifest, dict) self.assertIsInstance(metadata, dict) self.assertIsInstance(links, dict) self.assertIsInstance(stitched, list) diff --git a/test/service/test_manifest.py b/test/service/test_manifest.py index a47c36e12..4513bbbe7 100644 --- a/test/service/test_manifest.py +++ b/test/service/test_manifest.py @@ -29,7 +29,6 @@ ) from typing import ( Optional, - cast, ) from unittest.mock import ( MagicMock, @@ -111,7 +110,6 @@ JSON, JSONs, MutableJSON, - MutableJSONs, ) from indexer import ( AnvilCannedBundleTestCase, @@ -377,7 +375,7 @@ def _shared_file_bundle(self, bundle): links = self._replace_uuids(bundle.links, old_to_new) return DSSBundle(fqid=self.bundle_fqid(uuid=old_to_new[bundle.uuid], version=bundle.version), - manifest=cast(MutableJSONs, bundle.manifest), + manifest=bundle.manifest, metadata=metadata, links=links) @@ -555,15 +553,14 @@ def test_compact_manifest(self): # redundant file contributions from different bundles (for example due # to stitching) entity_ids = { - '89e313db-4423-4d53-b17e-164949acfa8f', # Supplementary file (metadata) - '5f9b45af-9a26-4b16-a785-7f2d1053dd7c', # Supplementary file (data) + '89e313db-4423-4d53-b17e-164949acfa8f', # Supplementary file '67bc798b-a34a-4104-8cab-cad648471f69', # Project } - manifest = [ - entry - for entry in bundle.manifest - if entry['uuid'] in entity_ids - ] + manifest = { + ref: entry + for ref, entry in bundle.manifest.items() + if EntityReference.parse(ref).entity_id in entity_ids + } metadata = { ref: copy_json(content) for ref, content in bundle.metadata.items()