From 6dbfdd52e47db5fd2bf90ebd995956c0fddada91 Mon Sep 17 00:00:00 2001
From: Noah Dove <nadove@ucsc.edu>
Date: Thu, 15 Dec 2022 18:07:05 -0800
Subject: [PATCH 1/2] Re-enable repository files test for AnVIL catalogs
 (#4507)

---
 test/integration_test.py | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/test/integration_test.py b/test/integration_test.py
index 2f376fd31..5eb028476 100644
--- a/test/integration_test.py
+++ b/test/integration_test.py
@@ -785,10 +785,6 @@ def _check_curl_manifest(self, _catalog: CatalogName, response: bytes):
 
     def _test_repository_files(self, catalog: str):
         with self.subTest('repository_files', catalog=catalog):
-            # FIXME: File downloads are broken on AnVIL deployments
-            #        https://github.com/DataBiosphere/azul/issues/4507
-            if config.is_anvil_enabled(catalog):
-                self.skipTest('File downloads are broken on AnVIL deployments')
             file = self._get_one_file(catalog)
             file_uuid, file_version = file['uuid'], file['version']
             endpoint_url = config.service_endpoint

From 50aa0e9b948ef332b8478ccf7e28f652e4f913b7 Mon Sep 17 00:00:00 2001
From: Noah Dove <nadove@ucsc.edu>
Date: Tue, 13 Dec 2022 15:45:53 -0800
Subject: [PATCH 2/2] Fix: AnVIL field size is inconsistently named (#4642)

---
 src/azul/plugins/metadata/anvil/__init__.py | 4 ++--
 test/integration_test.py                    | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/azul/plugins/metadata/anvil/__init__.py b/src/azul/plugins/metadata/anvil/__init__.py
index 65deb134a..9e26d3f08 100644
--- a/src/azul/plugins/metadata/anvil/__init__.py
+++ b/src/azul/plugins/metadata/anvil/__init__.py
@@ -155,8 +155,10 @@ def _field_mapping(self) -> MetadataPlugin._FieldMapping:
                             'file_id',
                             'data_modality',
                             'file_format',
+                            'file_size',
                             'file_md5sum',
                             'reference_assembly',
+                            'file_name',
                             # Not in schema
                             'crc32',
                             'sha256',
@@ -166,8 +168,6 @@ def _field_mapping(self) -> MetadataPlugin._FieldMapping:
                     # These field names are hard-coded in the implementation of
                     # the repository service/controller.
                     **{
-                        'file_size': 'size',
-                        'file_name': 'name',
                         # Not in schema
                         'version': 'fileVersion',
                         'uuid': 'fileId',
diff --git a/test/integration_test.py b/test/integration_test.py
index 5eb028476..2aa3fb541 100644
--- a/test/integration_test.py
+++ b/test/integration_test.py
@@ -564,7 +564,7 @@ def _get_one_file(self, catalog: CatalogName) -> JSON:
         if config.is_hca_enabled(catalog):
             file_size_facet = 'fileSize'
         elif config.is_anvil_enabled(catalog):
-            file_size_facet = 'size'
+            file_size_facet = 'files.file_size'
         else:
             assert False, catalog
         for filters in [self._fastq_filter(catalog), {}]: