This repo contains the terra-jupyter-gatk image that is compatible with notebook service in Terra called Leonardo. For example, use us.gcr.io/broad-dsp-gcr-public/terra-jupyter-gatk:{version} in terra.
The terra-jupyter-gatk extends the terra-jupyter-python and terra-jupyter-r by including the following:
- Open JDK
- GATK
- Samtools
To see the complete contents of this image please see the Dockerfile.
To select an older version this image, you can search the CHANGELOG.md for a specific package version you need.
Once you find an image version that you want, simply copy and paste the image url from the changelog into the corresponding custom docker field in the Terra notebook runtime widget.