From 06ee889a0edce67df99c7062222706730c40a86d Mon Sep 17 00:00:00 2001 From: LizBaldo Date: Mon, 16 Sep 2024 09:30:49 -0400 Subject: [PATCH] update qiime 2 package for AOU --- terra-jupyter-aou/Dockerfile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/terra-jupyter-aou/Dockerfile b/terra-jupyter-aou/Dockerfile index fa99ff16..aa5f471d 100644 --- a/terra-jupyter-aou/Dockerfile +++ b/terra-jupyter-aou/Dockerfile @@ -195,10 +195,10 @@ RUN apt-get update && \ && rm -rf /var/lib/apt/lists/* RUN pip install --upgrade pip && pip install --verbose h5py -# RW-8725 INSTALL QIMEE2 -RUN curl -fsSL -o qiime2-2022.8.yml https://data.qiime2.org/distro/core/qiime2-2022.8-py38-linux-conda.yml && \ - conda env create -n qiime2-2022.8 --file qiime2-2022.8.yml && \ - rm qiime2-2022.8.yml +# QIIME 2 2024.5 Amplicon Distribution +RUN curl -fsSL -o qiime2-2024.5.yml https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml && \ + conda env create -n qiime2-2024.5 --file qiime2-2024.5.yml && \ + rm qiime2-2024.5.yml # Install jellyfish RUN mkdir -p /tmp/jellyfish && \