From 0aea7b202f4e5cd51ff36f9cebd844cb87319cd3 Mon Sep 17 00:00:00 2001
From: lmcnatt <mcnatt@broadinstitute.org>
Date: Tue, 21 Nov 2023 13:17:33 -0500
Subject: [PATCH] updating req.txt

---
 terra-jupyter-gatk/Dockerfile         | 5 -----
 terra-jupyter-python/requirements.txt | 4 +++-
 2 files changed, 3 insertions(+), 6 deletions(-)

diff --git a/terra-jupyter-gatk/Dockerfile b/terra-jupyter-gatk/Dockerfile
index 17fc8b5c..dd80821d 100644
--- a/terra-jupyter-gatk/Dockerfile
+++ b/terra-jupyter-gatk/Dockerfile
@@ -79,11 +79,6 @@ COPY cnn-models.patch /etc/gatk-$GATK_VERSION/cnn-models.patch
 
 RUN patch -u /opt/conda/lib/python3.10/site-packages/vqsr_cnn/vqsr_cnn/models.py -i /etc/gatk-$GATK_VERSION/cnn-models.patch
 
-# Older version of nbconvert fail to convert notebooks to html
-RUN pip3 install --upgrade --force-reinstall bleach==6.0.0
-RUN pip3 install "nbconvert>=7.7.3"
-
-
 ENV PIP_USER=true
 
 ENV USER jupyter
diff --git a/terra-jupyter-python/requirements.txt b/terra-jupyter-python/requirements.txt
index 0cb936d9..80447698 100644
--- a/terra-jupyter-python/requirements.txt
+++ b/terra-jupyter-python/requirements.txt
@@ -16,7 +16,7 @@ biopython
 bx-python
 fastinterval
 matplotlib-venn
-bleach
+bleach==6.6.0
 cycler
 h5py
 html5lib
@@ -42,3 +42,5 @@ google-resumable-media
 #adding intel optimized xgboost and intel extension for scikit-learn
 scikit-learn-intelex
 xgboost
+#older version of nbconvert fail to convert notebooks to html
+nbconvert>=7.7.3