This package implements the Low Rank Graphing Quilting procedures.
- MATLAB 9.6+
- R 4.1.0+
hugepackage, 1.3.0+
The primary analysis pipeline can be run using the code found in LRGQ_master.m. This script is divided in to two parts:
- Generation of synthetic data used for simulation studies.
- LRGQ estimation procedure, with covariance imputation in Matlab and graphical model selection in R.
- Requires: K x o table of features in each block, observed covariance matrix.
Links to sample calcium imaging data sets are found in LinksToPublicDataSets.txt.