diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 8e42eff..663da44 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -3,23 +3,30 @@ concurrency: group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} cancel-in-progress: true on: - pull_request: - paths: - - '**.py' - push: - branches: [main] - paths: - - '**.py' +# pull_request: +# paths: +# - '**.py' +# push: +# branches: [main] +# paths: +# - '**.py' workflow_dispatch: +env: + SUBJECTS_DIR: /home/runner/work/brainprint-tests/brainprint-tests/data + SUBJECT_ID: test + DESTINATION_DIR: /home/runner/work/brainprint-tests/brainprint-tests/dat +h jobs: pytest: timeout-minutes: 30 strategy: fail-fast: false matrix: - os: [ubuntu, macos, windows] - python-version: ["3.9", "3.10", "3.11", "3.12"] +# os: [ubuntu, macos, windows] +# python-version: [3.8, 3.9, "3.10", "3.11"] + os: [ubuntu] + python-version: ["3.10"] name: ${{ matrix.os }} - py${{ matrix.python-version }} runs-on: ${{ matrix.os }}-latest defaults: @@ -32,12 +39,25 @@ jobs: uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} + architecture: 'x64' - name: Install package run: | python -m pip install --progress-bar off --upgrade pip setuptools wheel python -m pip install --progress-bar off .[test] + - name: Create data folders + run: | + mkdir -p data/test/mri + mkdir -p data/test/surf + mkdir -p data/test/temp - name: Display system information run: brainprint-sys_info --developer + - name: Download files + run: | + wget https://surfer.nmr.mgh.harvard.edu/pub/data/tutorial_data/buckner_data/tutorial_subjs/good_output/mri/aseg.mgz -O data/test/mri/aseg.mgz + wget https://surfer.nmr.mgh.harvard.edu/pub/data/tutorial_data/buckner_data/tutorial_subjs/good_output/surf/lh.white -O data/test/surf/lh.white + wget https://surfer.nmr.mgh.harvard.edu/pub/data/tutorial_data/buckner_data/tutorial_subjs/good_output/surf/rh.white -O data/test/surf/rh.white + wget https://surfer.nmr.mgh.harvard.edu/pub/data/tutorial_data/buckner_data/tutorial_subjs/good_output/surf/lh.pial -O data/test/surf/lh.pial + wget https://surfer.nmr.mgh.harvard.edu/pub/data/tutorial_data/buckner_data/tutorial_subjs/good_output/surf/rh.pial -O data/test/surf/rh.pial - name: Run pytest run: pytest brainprint --cov=brainprint --cov-report=xml --cov-config=pyproject.toml - name: Upload to codecov