diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 42aa02963..78988d934 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import Dict, List, Literal, Optional, Union +from typing import Dict, List, Literal, Optional, Set, Union from pydantic.v1 import Field, root_validator, validator from strenum import StrEnum @@ -24,6 +24,13 @@ from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none +SOURCE_SINKS_QUANTITIES_VALID_PREFIXES = ( + "initialtracer", + "tracerbnd", + "sedfracbnd", + "initialsedfrac", +) + class Boundary(INIBasedModel): """ @@ -181,6 +188,65 @@ def validate_location_type(cls, v: str) -> str: return v +class SourceSink(INIBasedModel): + """ + A `[SourceSink]` block for use inside an external forcings file, + i.e., a [ExtModel][hydrolib.core.dflowfm.ext.models.SourceSink]. + + All lowercased attributes match with the source-sink input as described in + [UM Sec.C.5.2.4](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.4). + """ + + _header: Literal["SourceSink"] = "SourceSink" + id: str = Field(alias="id") + name: str = Field("", alias="name") + locationfile: DiskOnlyFileModel = Field( + default_factory=lambda: DiskOnlyFileModel(None), alias="locationFile" + ) + + numcoordinates: Optional[int] = Field(alias="numCoordinates") + xcoordinates: Optional[List[float]] = Field(alias="xCoordinates") + ycoordinates: Optional[List[float]] = Field(alias="yCoordinates") + + zsource: Optional[Union[float, List[float]]] = Field(alias="zSource") + zsink: Optional[Union[float, List[float]]] = Field(alias="zSink") + discharge: Union[float, List[float]] = Field(alias="discharge") + area: Optional[float] = Field(alias="Area") + + salinitydelta: Optional[Union[List[float], float]] = Field(alias="SalinityDelta") + temperaturedelta: Optional[Union[List[float], float]] = Field( + alias="TemperatureDelta" + ) + + @classmethod + def _exclude_from_validation(cls, input_data: Optional[dict] = None) -> Set: + fields = cls.__fields__ + unknown_keywords = [ + key + for key in input_data.keys() + if key not in fields + and key.startswith(SOURCE_SINKS_QUANTITIES_VALID_PREFIXES) + ] + return set(unknown_keywords) + + class Config: + """ + Config class to tell Pydantic to accept fields not explicitly declared in the model. + """ + + # Allow dynamic fields + extra = "allow" + + def __init__(self, **data): + super().__init__(**data) + # Add dynamic attributes for fields starting with 'tracer' + for key, value in data.items(): + if isinstance(key, str) and key.startswith( + SOURCE_SINKS_QUANTITIES_VALID_PREFIXES + ): + setattr(self, key, value) + + class MeteoForcingFileType(StrEnum): """ Enum class containing the valid values for the forcingFileType @@ -318,7 +384,7 @@ def is_intermediate_link(self) -> bool: class ExtGeneral(INIGeneral): - """The external forcing file's `[General]` section with file meta data.""" + """The external forcing file's `[General]` section with file meta-data.""" _header: Literal["General"] = "General" fileversion: str = Field("2.01", alias="fileVersion") @@ -335,12 +401,14 @@ class ExtModel(INIModel): general (ExtGeneral): `[General]` block with file metadata. boundary (List[Boundary]): List of `[Boundary]` blocks for all boundary conditions. lateral (List[Lateral]): List of `[Lateral]` blocks for all lateral discharges. + source_sink (List[SourceSink]): List of `[SourceSink]` blocks for all source/sink terms. meteo (List[Meteo]): List of `[Meteo]` blocks for all meteorological forcings. """ general: ExtGeneral = ExtGeneral() boundary: List[Boundary] = Field(default_factory=list) lateral: List[Lateral] = Field(default_factory=list) + source_sink: List[SourceSink] = Field(default_factory=list) meteo: List[Meteo] = Field(default_factory=list) serializer_config: INISerializerConfig = INISerializerConfig( section_indent=0, property_indent=0 diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 0864c527f..e9cd8ef7c 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -210,8 +210,6 @@ class ExtOldMeteoQuantity(StrEnum): """Long wave radiation""" SolarRadiation = "solarradiation" """Solar radiation""" - DischargeSalinityTemperatureSorSin = "discharge_salinity_temperature_sorsin" - """Discharge, salinity temperature source-sinks""" NudgeSalinityTemperature = "nudge_salinity_temperature" """Nudging salinity and temperature""" AirPressure = "airpressure" @@ -302,6 +300,12 @@ def _missing_(cls, value): ) +class ExtOldSourcesSinks(StrEnum): + """Source and sink quantities""" + + DischargeSalinityTemperatureSorSin = "discharge_salinity_temperature_sorsin" + + class ExtOldQuantity(StrEnum): """Enum class containing the valid values for the boundary conditions category of the external forcings. @@ -789,3 +793,8 @@ def _get_serializer( @classmethod def _get_parser(cls) -> Callable[[Path], Dict]: return Parser.parse + + @property + def quantities(self) -> List[str]: + """List all the quantities in the external forcings file.""" + return [forcing.quantity for forcing in self.forcing] diff --git a/hydrolib/core/dflowfm/ini/models.py b/hydrolib/core/dflowfm/ini/models.py index b0c630c73..58ad95d3d 100644 --- a/hydrolib/core/dflowfm/ini/models.py +++ b/hydrolib/core/dflowfm/ini/models.py @@ -28,15 +28,22 @@ ModelSaveSettings, ParsableFileModel, ) - -from ..ini.io_models import CommentBlock, Document, Property, Section -from .parser import Parser -from .serializer import ( +from hydrolib.core.dflowfm.ini.io_models import ( + CommentBlock, + Document, + Property, + Section, +) +from hydrolib.core.dflowfm.ini.parser import Parser +from hydrolib.core.dflowfm.ini.serializer import ( DataBlockINIBasedSerializerConfig, INISerializerConfig, write_ini, ) -from .util import UnknownKeywordErrorManager, make_list_validator +from hydrolib.core.dflowfm.ini.util import ( + UnknownKeywordErrorManager, + make_list_validator, +) logger = logging.getLogger(__name__) @@ -121,12 +128,13 @@ class Config: @root_validator(pre=True) def _validate_unknown_keywords(cls, values): unknown_keyword_error_manager = cls._get_unknown_keyword_error_manager() + do_not_validate = cls._exclude_from_validation(values) if unknown_keyword_error_manager: unknown_keyword_error_manager.raise_error_for_unknown_keywords( values, cls._header, cls.__fields__, - cls._exclude_fields(), + cls._exclude_fields() | do_not_validate, ) return values @@ -181,6 +189,11 @@ def validate(cls: Type["INIBasedModel"], value: Any) -> "INIBasedModel": return super().validate(value) + @classmethod + def _exclude_from_validation(cls, input_data: Optional = None) -> Set: + """Fields that should not be checked when validating existing fields as they will be dynamically added.""" + return set() + @classmethod def _exclude_fields(cls) -> Set: return {"comments", "datablock", "_header"} diff --git a/hydrolib/core/dflowfm/ini/util.py b/hydrolib/core/dflowfm/ini/util.py index 4bf818902..11a3ed846 100644 --- a/hydrolib/core/dflowfm/ini/util.py +++ b/hydrolib/core/dflowfm/ini/util.py @@ -189,7 +189,7 @@ def validate_forbidden_fields( return values for field in field_names: - if values.get(field) != None: + if values.get(field) is not None: raise ValueError( f"{field} is forbidden when {conditional_field_name} {operator_str(comparison_func)} {conditional_value}" ) @@ -228,7 +228,7 @@ def validate_required_fields( return values for field in field_names: - if values.get(field) == None: + if values.get(field) is None: raise ValueError( f"{field} should be provided when {conditional_field_name} {operator_str(comparison_func)} {conditional_value}" ) @@ -654,28 +654,54 @@ def raise_error_for_unknown_keywords( """ unknown_keywords = self._get_all_unknown_keywords(data, fields, excluded_fields) - if len(unknown_keywords) == 0: - return - - raise ValueError( - f"Unknown keywords are detected in section: '{section_header}', '{unknown_keywords}'" - ) + if len(unknown_keywords) > 0: + raise ValueError( + f"Unknown keywords are detected in section: '{section_header}', '{unknown_keywords}'" + ) def _get_all_unknown_keywords( self, data: Dict[str, Any], fields: Dict[str, ModelField], excluded_fields: Set ) -> List[str]: + """ + Get all unknown keywords in the data. + + Args: + data: Dict[str, Any]: Input data containing all properties which are checked on unknown keywords. + fields: Dict[str, ModelField]: Known fields of the Model. + excluded_fields: Set[str]: Fields which should be excluded from the check for unknown keywords. + + Returns: + List[str]: List of unknown keywords. + """ list_of_unknown_keywords = [] - for name in data: - if self._is_unknown_keyword(name, fields, excluded_fields): - list_of_unknown_keywords.append(name) + for keyword in data: + if self._is_unknown_keyword(keyword, fields, excluded_fields): + list_of_unknown_keywords.append(keyword) return list_of_unknown_keywords + @staticmethod def _is_unknown_keyword( - self, name: str, fields: Dict[str, ModelField], excluded_fields: Set + keyword: str, fields: Dict[str, ModelField], excluded_fields: Set ): - for model_field in fields.values(): - if name == model_field.name or name == model_field.alias: - return False + """ + Check if the given field name equals to any of the model field names or aliases, if not, the function checks if + the field is not in the excluded_fields parameter. + + Args: + keyword: str: Name of the field. + fields: Dict[str, ModelField]: Known fields of the Model. + excluded_fields: Set[str]: Fields which should be excluded from the check for unknown keywords. + + Returns: + bool: True if the field is unknown (not a field name or alias and and not in the exclude list), + False otherwise + """ + exists = any( + keyword == model_field.name or keyword == model_field.alias + for model_field in fields.values() + ) + # the field is not in the known fields, check if it should be excluded + unknown = not exists and keyword not in excluded_fields - return name not in excluded_fields + return unknown diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index 41a7254ee..c4d1e1f8c 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -1,7 +1,7 @@ """models.py defines all classes and functions related to representing pol/pli(z) files. """ -from typing import Callable, List, Optional, Sequence +from typing import Callable, List, Optional, Sequence, Tuple from pydantic.v1 import Field @@ -80,7 +80,30 @@ class PolyObject(BaseModel): class PolyFile(ParsableFileModel): - """Poly-file (.pol/.pli/.pliz) representation.""" + """ + Poly-file (.pol/.pli/.pliz) representation. + + Notes: + - The `has_z_values` attribute is used to determine if the PolyFile contains z-values. + - The `has_z_values` is false by default and should be set to true if the PolyFile path ends with `.pliz`. + - The `***.pliz` file should have a 2*3 structure, where the third column contains the z-values, otherwise + (the parser will give an error). + - If there is a label in the file, the parser will ignore the label and read the file as a normal polyline file. + ``` + tfl_01 + 2 2 + 0.00 1.00 #zee + 0.00 2.00 #zee + ``` + - if the file is .pliz, and the dimensions are 2*5 the first three columns will be considered as x, y, z values + and the last two columns will be considered as data values. + ``` + L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 + ``` + """ has_z_values: bool = False objects: Sequence[PolyObject] = Field(default_factory=list) @@ -106,7 +129,63 @@ def _get_serializer(cls) -> Callable: @classmethod def _get_parser(cls) -> Callable: - # TODO Prevent circular dependency in Parser + # Prevent circular dependency in Parser from .parser import read_polyfile return read_polyfile + + @property + def x(self) -> List[float]: + """X-coordinates of all points in the PolyFile.""" + return [point.x for obj in self.objects for point in obj.points] + + @property + def y(self) -> List[float]: + """Y-coordinates of all points in the PolyFile.""" + return [point.y for obj in self.objects for point in obj.points] + + def get_z_sources_sinks(self) -> Tuple[List[float], List[float]]: + """ + Get the z values of the source and sink points from the polyline file. + + Returns: + z_source, z_sinkA: Tuple[List[float]]: + If the polyline has data (more than 3 columns), then both the z_source and z_sink will be a list of two values. + Otherwise, the z_source and the z_sink will be a single value each. + + Note: + - calling this method on a polyline file that does not have z-values will return a list of None. + + Examples: + in case the polyline has 3 columns: + >>> polyline = PolyFile("tests/data/input/source-sink/leftsor.pliz") + >>> z_source, z_sink = polyline.get_z_sources_sinks() + >>> print(z_source, z_sink) + [-3] [-4.2] + + in case the polyline has more than 3 columns: + >>> polyline = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") #Doctest: +SKIP + >>> z_source, z_sink = polyline.get_z_sources_sinks() + >>> print(z_source, z_sink) + [-3, -2.9] [-4.2, -5.35] + + in case the polyline does not have z-values: + >>> root_dir = "tests/data/input/dflowfm_individual_files/polylines" + >>> polyline = PolyFile(f"{root_dir}/boundary-polyline-no-z-no-label.pli") + >>> z_source, z_sink = polyline.get_z_sources_sinks() + >>> print(z_source, z_sink) + [None] [None] + """ + has_data = True if self.objects[0].points[0].data else False + + z_source_sink = [] + for elem in [0, -1]: + point = self.objects[0].points[elem] + if has_data: + z_source_sink.append([point.z, point.data[0]]) + else: + z_source_sink.append([point.z]) + + z_sink: list[float | None] = z_source_sink[0] + z_source: list[float | None] = z_source_sink[1] + return z_source, z_sink diff --git a/hydrolib/core/dflowfm/tim/models.py b/hydrolib/core/dflowfm/tim/models.py index 363981a09..4ea675e61 100644 --- a/hydrolib/core/dflowfm/tim/models.py +++ b/hydrolib/core/dflowfm/tim/models.py @@ -1,12 +1,12 @@ from pathlib import Path from typing import Callable, Dict, List +from pydantic.v1 import Field from pydantic.v1.class_validators import validator from hydrolib.core.basemodel import BaseModel, ModelSaveSettings, ParsableFileModel - -from .parser import TimParser -from .serializer import TimSerializer, TimSerializerConfig +from hydrolib.core.dflowfm.tim.parser import TimParser +from hydrolib.core.dflowfm.tim.serializer import TimSerializer, TimSerializerConfig class TimRecord(BaseModel): @@ -15,20 +15,24 @@ class TimRecord(BaseModel): time: float """float: Time of the time record.""" - data: List[float] = [] + data: List[float] = Field(default_factory=list) """List[float]: Record of the time record.""" class TimModel(ParsableFileModel): - """Class representing a tim (*.tim) file.""" + """Class representing a tim (*.tim) file. + + References: + - `TIM file format `_ + """ serializer_config = TimSerializerConfig() """TimSerializerConfig: The serialization configuration for the tim file.""" - comments: List[str] = [] + comments: List[str] = Field(default_factory=list) """List[str]: A list with the header comment of the tim file.""" - timeseries: List[TimRecord] = [] + timeseries: List[TimRecord] = Field(default_factory=list) """List[TimRecord]: A list containing the timeseries.""" @classmethod diff --git a/hydrolib/core/dflowfm/tim/parser.py b/hydrolib/core/dflowfm/tim/parser.py index dc1ddb3ba..a709783d8 100644 --- a/hydrolib/core/dflowfm/tim/parser.py +++ b/hydrolib/core/dflowfm/tim/parser.py @@ -29,10 +29,6 @@ def parse(filepath: Path) -> Dict[str, List[Any]]: ValueError: If the file contains a comment that is not at the start of the file. ValueError: If the data of the timeseries is empty. """ - - comments: List[str] = [] - timeseries: List[TimData] = [] - with filepath.open(encoding="utf8") as file: lines = file.readlines() comments, start_timeseries_index = TimParser._read_header_comments(lines) diff --git a/hydrolib/tools/ext_old_to_new/__init__.py b/hydrolib/tools/ext_old_to_new/__init__.py index 9d561cd40..e69de29bb 100644 --- a/hydrolib/tools/ext_old_to_new/__init__.py +++ b/hydrolib/tools/ext_old_to_new/__init__.py @@ -1 +0,0 @@ -from .main_converter import ext_old_to_new_from_mdu diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 4cbd3bd67..429d753c6 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,25 +1,31 @@ from abc import ABC, abstractmethod -from typing import Any, Dict +from pathlib import Path +from typing import Any, Dict, List, Union from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel -from hydrolib.core.dflowfm.ext.models import Boundary, Meteo +from hydrolib.core.dflowfm.ext.models import ( + SOURCE_SINKS_QUANTITIES_VALID_PREFIXES, + Boundary, + Meteo, + SourceSink, +) from hydrolib.core.dflowfm.extold.models import ( ExtOldBoundaryQuantity, ExtOldForcing, ExtOldInitialConditionQuantity, ExtOldMeteoQuantity, ExtOldParametersQuantity, + ExtOldSourcesSinks, ) -from hydrolib.core.dflowfm.inifield.models import ( - InitialField, - InterpolationMethod, - ParameterField, -) +from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField +from hydrolib.core.dflowfm.tim.models import TimModel +from hydrolib.core.dflowfm.tim.parser import TimParser from hydrolib.tools.ext_old_to_new.utils import ( + convert_interpolation_data, + create_initial_cond_and_parameter_input_dict, + find_temperature_salinity_in_quantities, oldfiletype_to_forcing_file_type, - oldmethod_to_averaging_type, - oldmethod_to_interpolation_method, ) @@ -98,15 +104,7 @@ def convert(self, forcing: ExtOldForcing) -> Meteo: f"convert this input. Encountered for QUANTITY=" f"{forcing.quantity} and FILENAME={forcing.filename}." ) - meteo_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if meteo_data["interpolationmethod"] == InterpolationMethod.averaging: - meteo_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - meteo_data["averagingrelsize"] = forcing.relativesearchcellsize - meteo_data["averagingnummin"] = forcing.nummin - meteo_data["averagingpercentile"] = forcing.percentileminmax - + meteo_data = convert_interpolation_data(forcing, meteo_data) meteo_data["extrapolationAllowed"] = bool(forcing.extrapolation_method) meteo_data["extrapolationSearchRadius"] = forcing.maxsearchradius meteo_data["operand"] = forcing.operand @@ -160,51 +158,6 @@ def convert(self, forcing: ExtOldForcing) -> Boundary: return new_block -def create_initial_cond_and_parameter_input_dict( - forcing: ExtOldForcing, -) -> Dict[str, str]: - """Create the input dictionary for the `InitialField` or `ParameterField` - - Args: - forcing: [ExtOldForcing] - External forcing block from the old external forcings file. - - Returns: - Dict[str, str]: - the input dictionary to the `InitialField` or `ParameterField` constructor - """ - block_data = { - "quantity": forcing.quantity, - "datafile": forcing.filename, - "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), - } - if block_data["datafiletype"] == "polygon": - block_data["value"] = forcing.value - - if forcing.sourcemask != DiskOnlyFileModel(None): - raise ValueError( - f"Attribute 'SOURCEMASK' is no longer supported, cannot " - f"convert this input. Encountered for QUANTITY=" - f"{forcing.quantity} and FILENAME={forcing.filename}." - ) - block_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if block_data["interpolationmethod"] == InterpolationMethod.averaging: - block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - block_data["averagingrelsize"] = forcing.relativesearchcellsize - block_data["averagingnummin"] = forcing.nummin - block_data["averagingpercentile"] = forcing.percentileminmax - block_data["operand"] = forcing.operand - - if hasattr(forcing, "extrapolation"): - block_data["extrapolationmethod"] = ( - "yes" if forcing.extrapolation == 1 else "no" - ) - - return block_data - - class InitialConditionConverter(BaseConverter): def __init__(self): @@ -284,6 +237,289 @@ def convert(self, forcing: ExtOldForcing) -> ParameterField: return new_block +class SourceSinkConverter(BaseConverter): + + def __init__(self): + super().__init__() + + @staticmethod + def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: + """Extract time series data from a TIM model. + + Extract the time series data (each column) from the TimModel object + + Args: + tim_model (TimModel): The TimModel object containing the time series data. + + Returns: + Dict[str, List[float]]: A dictionary containing the time series data form each column. + the keys of the dictionary will be index starting from 1 to the number of columns in the tim file + (excluding the first column(time)). + + Examples: + >>> tim_file = Path("tests/data/external_forcings/initial_waterlevel.tim") + >>> time_file = TimParser.parse(tim_file) + >>> tim_model = TimModel(**time_file) + >>> time_series = SourceSinkConverter().get_time_series_data(tim_model) + >>> print(time_series) + { + 1: [1.0, 1.0, 3.0, 5.0, 8.0], + 2: [2.0, 2.0, 5.0, 8.0, 10.0], + 3: [3.0, 5.0, 12.0, 9.0, 23.0], + 4: [4.0, 4.0, 4.0, 4.0, 4.0] + } + """ + num_columns = len(tim_model.timeseries[0].data) + + # Initialize a dictionary to collect data for each location + data = {loc: [] for loc in range(1, num_columns + 1)} + + # Extract time series data for each location + for record in tim_model.timeseries: + for loc_index, value in enumerate(record.data, start=1): + data[loc_index].append(value) + + return data + + @staticmethod + def merge_mdu_and_ext_file_quantities( + mdu_quantities: Dict[str, bool], temp_salinity_from_ext: Dict[str, int] + ) -> List[str]: + """Merge the temperature and salinity from the mdu file with the temperature and salinity from the external file. + + Args: + mdu_quantities (Dict[str, bool]): A dictionary containing the temperature and salinity details from the + mdu file, with bool values indecating if the temperature/salinity is activated in the mdu file. + temp_salinity_from_ext (Dict[str,int]): A dictionary containing the temperature and salinity details from + the external file. + + Returns: + List[str]: A list of quantities that will be used in the tim file. + """ + if mdu_quantities: + mdu_file_quantity_list = [key for key, val in mdu_quantities.items() if val] + temp_salinity_from_mdu = find_temperature_salinity_in_quantities( + mdu_file_quantity_list + ) + final_temp_salinity = temp_salinity_from_ext | temp_salinity_from_mdu + # the kwargs will be provided only from the source and sink converter + # Ensure 'temperature' comes before 'salinity' + keys = list(final_temp_salinity.keys()) + if "temperaturedelta" in keys and "salinitydelta" in keys: + keys.remove("salinitydelta") + keys.insert(keys.index("temperaturedelta"), "salinitydelta") + else: + keys = list(temp_salinity_from_ext.keys()) + + return keys + + def parse_tim_model( + self, tim_file: Path, ext_file_quantity_list: List[str], **mdu_quantities + ) -> Dict[str, List[float]]: + """Parse the source and sinks related time series from the tim file. + + - Parse the TIM file and extract the time series data for each column. + - assign the time series data to the corresponding quantity name. + + The order of the quantities in the tim file should be as follows: + - time + - discharge + - salinitydelta (optional) + - temperaturedelta (optional) + - initialtracer-anyname (optional) + - any other quantities from the external forcings file. + + Args: + tim_file (Path): The path to the TIM file. + ext_file_quantity_list (List[str]): A list of other quantities that are present in the external forcings file. + **mdu_quantities: keyword argumens that will be provided if you want to provide the temperature and salinity + details from the mdu file, the dictionary will have two keys `temperature`, `salinity` and the values are + only bool. (i.e. {"temperature", False, "salinity": True}) + + Returns: + Dict[str, List[float]]: A dictionary containing the time series data form each column in the tim_file. + the keys of the dictionary will be the quantity names, and the values will be the time series data. + + Raises: + ValueError: If the number of columns in the TIM file does not match the number of quantities in the external + forcings file that has one of the following prefixes `initialtracer`,`tracerbnd`, + `sedfracbnd`,`initialsedfrac`, plus the discharge, temperature, and salinity. + + Notes: + - The function will combine the temperature and salinity from the MDU file (value is 1) file with the + quantities mentioned in the external forcing file, and will get the list of quantities that are in the tim file. + - The function will return a dictionary with the quantities as keys and the time series data as values. + + Examples: + if the tim file contains 5 columns (the first column is the time): + ``` + 0.0 1.0 2.0 3.0 4.0 + 1.0 1.0 2.0 3.0 4.0 + 2.0 1.0 2.0 3.0 4.0 + 3.0 1.0 2.0 3.0 4.0 + 4.0 1.0 2.0 3.0 4.0 + ``` + and the external file contains the following quantities: + >>> ext_file_quantity_list = ["discharge", "temperature", "salinity", "initialtracer-anyname", + ... "anyother-quantities"] + + - The function will filter the external forcing quantities that have one of the following prefixes + `initialtracer`,`tracerbnd`, `sedfracbnd`,`initialsedfrac`, plus the discharge, temperature, and salinity. + - If the mdu_quantities are provided, the function will merge the temperature and salinity from the mdu file + with the filtered quantities mentioned in the external forcing file. + - The merged list of quantities from both the ext and mdu files will then be compared with the number of + columns in the TIM file, if they don't match a `Value Error` will be raised. + - Here the filtered quantities are ["discharge", "temperature", "salinity", "initialtracer-anyname"] and the + tim file contains 4 columns (excluding the time column). + + >>> tim_file = Path("tests/data/input/source-sink/leftsor.tim") + + >>> converter = SourceSinkConverter() + >>> time_series = converter.parse_tim_model(tim_file, ext_file_quantity_list) + >>> print(time_series) + { + "discharge": [1.0, 1.0, 1.0, 1.0, 1.0], + "salinitydelta": [2.0, 2.0, 2.0, 2.0, 2.0], + "temperaturedelta": [3.0, 3.0, 3.0, 3.0, 3.0], + "initialtracer-anyname": [4.0, 4.0, 4.0, 4.0, 4.0], + } + + + mdu file: + ``` + [physics] + ... + Salinity = 1 # Include salinity, (0=no, 1=yes) + ... + Temperature = 1 # Include temperature, (0=no, 1=only transport, 3=excess model of D3D,5=heat flux model (5) of D3D) + ``` + external forcings file: + ``` + QUANTITY=initialtemperature + FILENAME=right.pol + ... + + QUANTITY=initialsalinity + FILENAME=right.pol + ... + ``` + """ + time_file = TimParser.parse(tim_file) + tim_model = TimModel(**time_file) + time_series = self.get_time_series_data(tim_model) + # get the required quantities from the external file + required_quantities_from_ext = [ + key + for key in ext_file_quantity_list + if key.startswith(SOURCE_SINKS_QUANTITIES_VALID_PREFIXES) + ] + + # check if the temperature and salinity are present in the external file + temp_salinity_from_ext = find_temperature_salinity_in_quantities( + ext_file_quantity_list + ) + + final_temp_salinity = self.merge_mdu_and_ext_file_quantities( + mdu_quantities, temp_salinity_from_ext + ) + final_quantities_list = ( + ["discharge"] + final_temp_salinity + required_quantities_from_ext + ) + + if len(time_series) != len(final_quantities_list): + raise ValueError( + f"Number of columns in the TIM file '{tim_file}: {len(time_series)}' does not match the number of " + f"quantities in the external forcing file: {final_quantities_list}." + ) + + time_series = { + final_quantities_list[i]: time_series[i + 1] + for i in range(len(final_quantities_list)) + } + return time_series + + @property + def root_dir(self) -> Path: + return self._root_dir + + @root_dir.setter + def root_dir(self, value: Union[Path, str]): + if isinstance(value, str): + value = Path(value) + self._root_dir = value + + def convert( + self, + forcing: ExtOldForcing, + ext_file_quantity_list: List[str] = None, + **temp_salinity_mdu, + ) -> SourceSink: + """Convert an old external forcing block with Sources and sinks to a SourceSink + forcing block suitable for inclusion in a new external forcings file. + + Args: + forcing (ExtOldForcing): The contents of a single forcing block in an old external forcings file. This + object contains all the necessary information, such as quantity, values, and timestamps, required for the + conversion process. + ext_file_quantity_list (List[str], default is None): A list of other quantities that are present in the + external forcings file. + **temp_salinity_mdu: + keyword arguments that will be provided if you want to provide the temperature and salinity details from + the mdu file, the dictionary will have two keys `temperature`, `salinity` and the values are only bool. + >>> {'salinity': True, 'temperature': True} + + Returns: + SourceSink: A SourceSink object that represents the converted forcing + block, ready to be included in a new external forcings file. The + SourceSink object conforms to the new format specifications, ensuring + compatibility with updated systems and models. + + Raises: + ValueError: If the forcing block contains a quantity that is not + supported by the converter, a ValueError is raised. This ensures + that only compatible forcing blocks are processed, maintaining + data integrity and preventing errors in the conversion process. + + References: + - `Sources and Sinks `_ + - `Polyline ` + - `TIM file format `_ + - `Sources and Sinks `_ + - `Source and sink definitions `_ + + """ + location_file = forcing.filename.filepath + polyline = forcing.filename + + z_source, z_sink = polyline.get_z_sources_sinks() + + # check the tim file + tim_file = self.root_dir / polyline.filepath.with_suffix(".tim").name + if not tim_file.exists(): + raise ValueError( + f"TIM file '{tim_file}' not found for QUANTITY={forcing.quantity}" + ) + + time_series = self.parse_tim_model( + tim_file, ext_file_quantity_list, **temp_salinity_mdu + ) + + data = { + "id": "L1", + "name": forcing.quantity, + "locationfile": location_file, + "numcoordinates": len(polyline.x), + "xcoordinates": polyline.x, + "ycoordinates": polyline.y, + "zsource": z_source, + "zsink": z_sink, + } + data = data | time_series + new_block = SourceSink(**data) + + return new_block + + class ConverterFactory: """ A factory class for creating converters based on the given quantity. @@ -312,6 +548,8 @@ def create_converter(quantity) -> BaseConverter: return BoundaryConditionConverter() elif ConverterFactory.contains(ExtOldParametersQuantity, quantity): return ParametersConverter() + elif ConverterFactory.contains(ExtOldSourcesSinks, quantity): + return SourceSinkConverter() else: raise ValueError(f"No converter available for QUANTITY={quantity}.") diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 7ec52b276..55a7f2fe4 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -2,11 +2,19 @@ import os import sys from pathlib import Path -from typing import Tuple, Union +from typing import Optional, Tuple, Union + +from tqdm import tqdm from hydrolib.core import __version__ from hydrolib.core.basemodel import PathOrStr -from hydrolib.core.dflowfm.ext.models import Boundary, ExtModel, Lateral, Meteo +from hydrolib.core.dflowfm.ext.models import ( + Boundary, + ExtModel, + Lateral, + Meteo, + SourceSink, +) from hydrolib.core.dflowfm.extold.models import ExtOldModel from hydrolib.core.dflowfm.inifield.models import ( IniFieldModel, @@ -19,21 +27,19 @@ from hydrolib.tools.ext_old_to_new.utils import ( backup_file, construct_filemodel_new_or_existing, - construct_filepath_with_postfix, ) -_program: str = "ext_old_to_new" -_verbose: bool = False - class ExternalForcingConverter: def __init__( self, extold_model: Union[PathOrStr, ExtOldModel], - ext_model_path: PathOrStr = None, - inifield_model_path: PathOrStr = None, - structure_model_path: PathOrStr = None, + ext_file: Optional[PathOrStr] = None, + inifield_file: Optional[PathOrStr] = None, + structure_file: Optional[PathOrStr] = None, + fm_model: Optional[LegacyFMModel] = None, + verbose: bool = False, ): """Initialize the converter. @@ -42,42 +48,70 @@ def __init__( Args: extold_model (PathOrStr, ExtOldModel): ExtOldModel or path to the old external forcing file. - ext_model_path (PathOrStr, optional): Path to the new external forcing file. - inifield_model_path (PathOrStr, optional): Path to the initial field file. - structure_model_path (PathOrStr, optional): Path to the structure file. + ext_file (PathOrStr, optional): Path to the new external forcing file. + inifield_file (PathOrStr, optional): Path to the initial field file. + structure_file (PathOrStr, optional): Path to the structure file. + verbose (bool, optional): Enable verbose output. Defaults to False. + + Raises: + FileNotFoundError: If the old external forcing file does not exist. + + Examples: + >>> converter = ExternalForcingConverter("old-external-forcing.ext") + >>> converter.update() """ if isinstance(extold_model, Path) or isinstance(extold_model, str): extold_model = self._read_old_file(extold_model) self._extold_model = extold_model + self._verbose = verbose rdir = extold_model.filepath.parent + self._root_dir = rdir # create the new models if not provided by the user in the same directory as the old external file - path = ( - rdir.joinpath("new-external-forcing.ext") - if ext_model_path is None - else ext_model_path - ) + path = rdir / "new-external-forcing.ext" if ext_file is None else ext_file self._ext_model = construct_filemodel_new_or_existing(ExtModel, path) path = ( - rdir.joinpath("new-initial-conditions.ext") - if inifield_model_path is None - else inifield_model_path + rdir / "new-initial-conditions.ext" + if inifield_file is None + else inifield_file ) self._inifield_model = construct_filemodel_new_or_existing(IniFieldModel, path) - path = ( - rdir.joinpath("new-structure.ext") - if structure_model_path is None - else structure_model_path - ) + path = rdir / "new-structure.ext" if structure_file is None else structure_file self._structure_model = construct_filemodel_new_or_existing( StructureModel, path ) + if fm_model is not None: + self._fm_model = fm_model + @property - def extold_model(self): + def verbose(self) -> bool: + """bool: Enable verbose output.""" + return self._verbose + + @verbose.setter + def verbose(self, value: bool): + self._verbose = value + + @property + def fm_model(self) -> LegacyFMModel: + """FMModel: object with all blocks.""" + if not hasattr(self, "_fm_model"): + model = None + else: + model = self._fm_model + return model + + @property + def root_dir(self) -> Path: + """Root directory of the external forcing file.""" + return self._root_dir + + @property + def extold_model(self) -> ExtOldModel: """old external forcing model.""" return self._extold_model @@ -130,24 +164,17 @@ def structure_model(self, path: PathOrStr): @staticmethod def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: """Read a legacy D-Flow FM external forcings file (.ext) into an - ExtOldModel object. - - - The `read_old_file` method instantiates an ExternalForcingConverter object with an ExtOldModel object and - a default set of new external forcing, initial field and structure models. - - The new models will be created in the same directory as the old external forcing file. - - The new external forcing file will be named new-external-forcing.ext, the new initial conditions file will be - named new-initial-conditions.ext and the new structure file will be named new-structure.ext. - - However the user can change the paths to the new models by using the ``ext_model``, ``inifield_model`` and - ``structure_model`` setters. The new models will be created in the specified paths. - - the user can also set the paths to the new models using the `converter.ext_model.filepath= "mypath.ext"`. + ExtOldModel object. Args: extoldfile (PathOrStr): path to the external forcings file (.ext) - Returns: - ExtOldModel: object with all forcing blocks. + Returns: + ExtOldModel: object with all forcing blocks. + + Raises: + FileNotFoundError: If the old external forcing file does not exist. """ - global _verbose if not isinstance(extoldfile, Path): extoldfile = Path(extoldfile) @@ -156,50 +183,32 @@ def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: extold_model = ExtOldModel(extoldfile) - if _verbose: - print(f"Read {len(extold_model.forcing)} forcing blocks from {extoldfile}.") - return extold_model def update( self, - postfix: str = "", ) -> Union[Tuple[ExtModel, IniFieldModel, StructureModel], None]: """ - Convert old external forcing file to new format files. + Convert the old external forcing file to a new format files. When the output files are existing, output will be appended to them. - Args: - postfix (str, optional): Append POSTFIX to the output filenames. Defaults to "". - Returns: Tuple[ExtOldModel, ExtModel, IniFieldModel, StructureModel]: The updated models (already written to disk). Maybe used at call site to inspect the updated models. """ - if _verbose: - workdir = os.getcwd() + "\\" - print(f"Work dir: {workdir}") - print("Using attribute files:") - print("Input:") - print(f"* {self.extold_model.filepath}") - print("Output:") - print(f"* {self.ext_model.filepath}") - print(f"* {self.inifield_model.filepath}") - print(f"* {self.structure_model.filepath}") + self._log_conversion_details() for forcing in self.extold_model.forcing: - try: - converter_class = ConverterFactory.create_converter(forcing.quantity) - new_quantity_block = converter_class.convert(forcing) - except ValueError: - # While this tool is in progress, accept that we do not convert all quantities yet. - new_quantity_block = None + + new_quantity_block = self._convert_forcing(forcing) if isinstance(new_quantity_block, Boundary): self.ext_model.boundary.append(new_quantity_block) elif isinstance(new_quantity_block, Lateral): self.ext_model.lateral.append(new_quantity_block) + elif isinstance(new_quantity_block, SourceSink): + self.ext_model.source_sink.append(new_quantity_block) elif isinstance(new_quantity_block, Meteo): self.ext_model.meteo.append(new_quantity_block) elif isinstance(new_quantity_block, InitialField): @@ -214,8 +223,41 @@ def update( f"{self.extold_model.filepath}." ) + if self.fm_model is not None: + self._update_fm_model() + return self.ext_model, self.inifield_model, self.structure_model + def _convert_forcing(self, forcing) -> Union[Boundary, Lateral, Meteo, SourceSink]: + """Convert a single forcing block to the appropriate new format.""" + + try: + converter_class = ConverterFactory.create_converter(forcing.quantity) + + # only the SourceSink converter needs the quantities' list + if converter_class.__class__.__name__ == "SourceSinkConverter": + temp_salinity_mdu = {} + if self.fm_model is not None: + salinity = self.fm_model.physics.salinity + temperature = self.fm_model.physics.temperature + temp_salinity_mdu = { + "salinity": salinity, + "temperature": temperature, + } + + quantities = self.extold_model.quantities + converter_class.root_dir = self.root_dir + new_quantity_block = converter_class.convert( + forcing, quantities, **temp_salinity_mdu + ) + else: + new_quantity_block = converter_class.convert(forcing) + except ValueError: + # While this tool is in progress, accept that we do not convert all quantities yet. + new_quantity_block = None + + return new_quantity_block + def save(self, backup: bool = True): """Save the updated models to disk. @@ -232,116 +274,139 @@ def save(self, backup: bool = True): self.ext_model.save() self.inifield_model.save() self.structure_model.save() + if self.fm_model is not None: + backup_file(self.fm_model.filepath) + self.fm_model.save(recurse=False, exclude_unset=True) + + @classmethod + def from_mdu( + cls, + mdu_file: PathOrStr, + ext_file: Optional[PathOrStr] = "forcings.ext", + inifield_file: Optional[PathOrStr] = "inifields.ini", + structure_file: Optional[PathOrStr] = "structures.ini", + suppress_errors: Optional[bool] = False, + ) -> "ExternalForcingConverter": + """class method to create the converter from MDU file. + Args: + mdu_file (PathOrStr): Path to the D-Flow FM main input file (.mdu). + Must be parsable into a standard FMModel. + When this contains a valid filename for ExtFile, conversion + will be performed. + ext_file (PathOrStr, optional): Path to the output external forcings + file. Defaults to the given ExtForceFileNew in the MDU file, if + present, or forcings.ext otherwise. + inifield_file (PathOrStr, optional): Path to the output initial field + file. Defaults to the given IniFieldFile in the MDU file, if + present, or inifields.ini otherwise. + structure_file (PathOrStr, optional): Path to the output structures.ini + file. Defaults to the given StructureFile in the MDU file, if + present, or structures.ini otherwise. + suppress_errors: Optional[bool]: Whether to suppress errors during execution. -def ext_old_to_new_from_mdu( - mdufile: PathOrStr, - extfile: PathOrStr = "forcings.ext", - inifieldfile: PathOrStr = "inifields.ini", - structurefile: PathOrStr = "structures.ini", - backup: bool = True, - postfix: str = "_new", -): - """Wrapper converter function for converting legacy external forcings - files into cross section .ini files, for files listed in an MDU file. + Returns: + ExternalForcingConverter: The converter object. + """ + try: + fm_model = LegacyFMModel(mdu_file, recurse=False) + root_dir = fm_model._resolved_filepath.parent - Args: - mdufile (PathOrStr): Path to the D-Flow FM main input file (.mdu). - Must be parsable into a standard FMModel. - When this contains a valid filename for ExtFile, conversion - will be performed. - extfile (PathOrStr, optional): Path to the output external forcings - file. Defaults to the given ExtForceFileNew in the MDU file, if - present, or forcings.ext otherwise. - inifieldfile (PathOrStr, optional): Path to the output initial field - file. Defaults to the given IniFieldFile in the MDU file, if - present, or inifields.ini otherwise. - structurefile (PathOrStr, optional): Path to the output structures.ini - file. Defaults to the given StructureFile in the MDU file, if - present, or structures.ini otherwise. - backup (bool, optional): Create a backup of each file that will be - overwritten. Defaults to True. - postfix (str, optional): Append postfix to the output filenames - (before the file suffix). Defaults to "_new". - """ - global _verbose - - # For flexibility, also accept legacy MDU file versions (which does not - # affect external forcings functionality anyway): - try: - fmmodel = LegacyFMModel(mdufile, recurse=False) - except Exception as error: - print(f"Could not read {mdufile} as a valid FM model:", error) - return - - workdir = fmmodel._resolved_filepath.parent - os.chdir(workdir) - if fmmodel.external_forcing.extforcefile is None and _verbose: - print(f"mdufile: {mdufile} does not contain an old style external forcing file") - return - - extoldfile = fmmodel.external_forcing.extforcefile._resolved_filepath - - extfile = ( - fmmodel.external_forcing.extforcefilenew._resolved_filepath - if fmmodel.external_forcing.extforcefilenew - else workdir / extfile - ) - inifieldfile = ( - fmmodel.geometry.inifieldfile._resolved_filepath - if fmmodel.geometry.inifieldfile - else workdir / inifieldfile - ) - structurefile = ( - fmmodel.geometry.structurefile[0]._resolved_filepath - if fmmodel.geometry.structurefile - else workdir / structurefile - ) + extoldfile = root_dir / fm_model.external_forcing.extforcefile.filepath - converter = ExternalForcingConverter( - extoldfile, extfile, inifieldfile, structurefile - ) + ext_file = ( + fm_model.external_forcing.extforcefilenew._resolved_filepath + if fm_model.external_forcing.extforcefilenew + else root_dir / ext_file + ) + inifield_file = ( + fm_model.geometry.inifieldfile._resolved_filepath + if fm_model.geometry.inifieldfile + else root_dir / inifield_file + ) + structure_file = ( + fm_model.geometry.structurefile[0]._resolved_filepath + if fm_model.geometry.structurefile + else root_dir / structure_file + ) + return cls(extoldfile, ext_file, inifield_file, structure_file, fm_model) + + except Exception as error: + if suppress_errors: + print(f"Could not read {mdu_file} as a valid FM model:", error) + else: + raise error + + def _update_fm_model(self): + """Update the FM model with the new external forcings, initial fields and structures files. + + - The FM model will be saved with a postfix added to the filename. + - The original FM model will be backed up. + """ + if len(self.extold_model.forcing) > 0: + self.fm_model.external_forcing.extforcefile = self.extold_model - # The actual conversion: - ext_model, inifield_model, structure_model = converter.update(postfix) - converter.save(backup) - extold_model = converter.extold_model - try: - # And include the new files in the FM model: - _ = ExtModel(extfile) - if len(extold_model.forcing) > 0: - fmmodel.external_forcing.extforcefile = extold_model # Intentionally always include the new external forcings file, even if empty. - fmmodel.external_forcing.extforcefilenew = ext_model - if len(inifield_model.initial) > 0 or len(inifield_model.parameter) > 0: - fmmodel.geometry.inifieldfile = inifield_model - if len(structure_model.structure) > 0: - fmmodel.geometry.structurefile[0] = structure_model + self.fm_model.external_forcing.extforcefilenew = self.ext_model + if ( + len(self.inifield_model.initial) > 0 + or len(self.inifield_model.parameter) > 0 + ): + self.fm_model.geometry.inifieldfile = self.inifield_model + if len(self.structure_model.structure) > 0: + self.fm_model.geometry.structurefile[0] = self.structure_model + + if self.verbose: + print(f"succesfully saved converted file {self.fm_model.filepath} ") + + def _log_conversion_details(self): + """Log details about the conversion process if verbosity is enabled.""" + if self.verbose: + workdir = os.getcwd() + "\\" + print(f"Work dir: {workdir}") + print("Using attribute files:") + print("Input:") + print(f"* {self.extold_model.filepath}") + print("Output:") + print(f"* {self.ext_model.filepath}") + print(f"* {self.inifield_model.filepath}") + print(f"* {self.structure_model.filepath}") - # Save the updated FM model: - if backup: - backup_file(fmmodel.filepath) - converted_mdufile = construct_filepath_with_postfix(mdufile, postfix) - fmmodel.filepath = converted_mdufile - fmmodel.save(recurse=False, exclude_unset=True) - if _verbose: - print(f"succesfully saved converted file {mdufile} ") - except Exception as error: - print("The converter did not produce a valid ext file:", error) - return +def ext_old_to_new_dir_recursive( + root_dir: PathOrStr, backup: bool = True, suppress_errors: bool = False +): + """Migrate all external forcings files in a directory tree to the new format. + Args: + root_dir: Directory to recursively find and convert .mdu files in. + backup (bool, optional): Create a backup of each file that will be overwritten. + suppress_errors (bool, optional): Suppress errors during conversion. + """ + mdu_files = [ + path for path in Path(root_dir).rglob("*.mdu") if "_ext" not in path.name + ] -def ext_old_to_new_dir_recursive(dir: PathOrStr, backup: bool = True): + if not mdu_files: + print("No .mdu files found in the specified directory.") + else: + print(f"Found {len(mdu_files)} .mdu files. Starting conversion...") - for path in Path(dir).rglob("*.mdu"): - if "_ext" not in path.name: - ext_old_to_new_from_mdu(path, backup) + for path in tqdm(mdu_files, desc="Converting files"): + try: + converter = ExternalForcingConverter.from_mdu( + path, suppress_errors=suppress_errors + ) + _, _, _ = converter.update() + converter.save(backup=backup) + except Exception as e: + if not suppress_errors: + print(f"Error processing {path}: {e}") def _get_parser() -> argparse.ArgumentParser: parser = argparse.ArgumentParser( - prog=_program, + prog="ext_old_to_new", description="Convert D-Flow FM legacy external forcings files to current external forcings file/initial fields file/structures file.", ) @@ -405,12 +470,8 @@ def main(args=None): A of arguments as if they were input in the command line. Leave it None to use sys.argv. """ - global _verbose - parser = _get_parser() args = parser.parse_args(args) - _verbose = args.verbose - backup = args.backup is not None if args.mdufile is not None and args.extoldfile is not None: @@ -425,9 +486,12 @@ def main(args=None): outfiles["structurefile"] = args.outfiles[2] if args.mdufile is not None: - ext_old_to_new_from_mdu( - args.mdufile, **outfiles, backup=backup, postfix=args.postfix + converter = ExternalForcingConverter.from_mdu( + args.mdufile, **outfiles, suppress_errors=True ) + converter.verbose = args.verbose + converter.update() + converter.save(backup=backup) elif args.extoldfile is not None: converter = ExternalForcingConverter( args.extoldfile, @@ -435,15 +499,13 @@ def main(args=None): outfiles["inifieldfile"], outfiles["structurefile"], ) - converter.update(postfix=args.postfix) + converter.update() converter.save(backup=backup) elif args.dir is not None: ext_old_to_new_dir_recursive(args.dir, backup=backup) else: print("Error: no input specified. Use one of --mdufile, --extoldfile or --dir.") - print(_program + ": done") - if __name__ == "__main__": main() diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index f8efab58b..f0e49a066 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -1,12 +1,13 @@ +from collections import OrderedDict from pathlib import Path -from typing import Type, Union +from typing import Any, Dict, List, Type, Union -from hydrolib.core.basemodel import FileModel, PathOrStr +from hydrolib.core.basemodel import DiskOnlyFileModel, FileModel, PathOrStr from hydrolib.core.dflowfm.ext.models import ( MeteoForcingFileType, MeteoInterpolationMethod, ) -from hydrolib.core.dflowfm.extold.models import ExtOldFileType +from hydrolib.core.dflowfm.extold.models import ExtOldFileType, ExtOldForcing from hydrolib.core.dflowfm.inifield.models import ( AveragingType, DataFileType, @@ -48,7 +49,7 @@ def backup_file(filepath: PathOrStr) -> None: """ filepath = Path(filepath) if isinstance(filepath, str) else filepath if filepath.is_file(): - backup_path = filepath.with_suffix(".bak") + backup_path = filepath.with_suffix(filepath.suffix + ".bak") filepath.replace(backup_path) @@ -64,6 +65,9 @@ def construct_filepath_with_postfix(filepath: PathOrStr, postfix: str) -> Path: Returns: Path: The new filepath with the postfix included. + Examples: + >>> construct_filepath_with_postfix("file.txt", "_new") + Path("file_new.txt") """ file_as_path = Path(filepath) return file_as_path.with_stem(file_as_path.stem + postfix) @@ -163,3 +167,106 @@ def oldmethod_to_averaging_type( averaging_type = "unknown" return averaging_type + + +def convert_interpolation_data( + forcing: ExtOldForcing, data: Dict[str, Any] +) -> Dict[str, str]: + """Convert interpolation data from old to new format. + + Args: + forcing (ExtOldForcing): The old forcing block with interpolation data. + data (Dict[str, Any]): The dictionary to which the new data will be added. + + Returns: + Dict[str, str]: The updated dictionary with the new interpolation data. + - The dictionary will contain the "interpolationmethod" key with the new interpolation method. + - if the interpolation method is "Averaging" (method = 6), the dictionary will also contain + the "averagingtype", "averagingrelsize", "averagingnummin", and "averagingpercentile" keys. + """ + data["interpolationmethod"] = oldmethod_to_interpolation_method(forcing.method) + if data["interpolationmethod"] == InterpolationMethod.averaging: + data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + data["averagingrelsize"] = forcing.relativesearchcellsize + data["averagingnummin"] = forcing.nummin + data["averagingpercentile"] = forcing.percentileminmax + + return data + + +def create_initial_cond_and_parameter_input_dict( + forcing: ExtOldForcing, +) -> Dict[str, str]: + """Create the input dictionary for the `InitialField` or `ParameterField` + + Args: + forcing: [ExtOldForcing] + External forcing block from the old external forcings file. + + Returns: + Dict[str, str]: + the input dictionary to the `InitialField` or `ParameterField` constructor + """ + block_data = { + "quantity": forcing.quantity, + "datafile": forcing.filename, + "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), + } + if block_data["datafiletype"] == "polygon": + block_data["value"] = forcing.value + + if forcing.sourcemask != DiskOnlyFileModel(None): + raise ValueError( + f"Attribute 'SOURCEMASK' is no longer supported, cannot " + f"convert this input. Encountered for QUANTITY=" + f"{forcing.quantity} and FILENAME={forcing.filename}." + ) + block_data = convert_interpolation_data(forcing, block_data) + block_data["operand"] = forcing.operand + + if hasattr(forcing, "extrapolation"): + block_data["extrapolationmethod"] = ( + "yes" if forcing.extrapolation == 1 else "no" + ) + + return block_data + + +def find_temperature_salinity_in_quantities(strings: List[str]) -> Dict[str, int]: + """ + Searches for keywords "temperature" and "salinity" in a list of strings + and returns a dictionary with associated values. + + Args: + strings (List[str]): A list of strings to search. + + Returns: + Dict[str, int]: A dictionary with keys as "salinity" or "temperature" + and values 3 and 4 respectively. + + Examples: + >>> find_temperature_salinity_in_quantities(["temperature", "Salinity"]) + OrderedDict({"salinitydelta": 3, "temperaturedelta": 4}) + + >>> find_temperature_salinity_in_quantities(["Temperature"]) + OrderedDict({"temperaturedelta": 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a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,7 @@ pydantic = "^2.5" lxml = "^5.0" meshkernel = "^5.0.1" strenum = "^0" +tqdm = "^4.67.1" [tool.poetry.dev-dependencies] pytest = "^8.0" @@ -123,9 +124,7 @@ addopts = """ --ignore=tests/rr/test_fnm.py --deselect=tests/test_model.py::test_dimr_mode_save --deselect=tests/test_model.py::test_dimr_model ---deselect=tests/tools/test_main_converter.py::TestExtOldToNew::test_wind_combi_uniform_curvi """ - [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" diff --git a/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label-2by3.pliz b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label-2by3.pliz new file mode 100644 index 000000000..ee1c70181 --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label-2by3.pliz @@ -0,0 +1,4 @@ +tfl_01 + 2 3 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 diff --git a/tests/data/input/dflowfm_individual_files/polylines/leftsor-5-columns.pliz b/tests/data/input/dflowfm_individual_files/polylines/leftsor-5-columns.pliz new file mode 100644 index 000000000..a3006d269 --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/leftsor-5-columns.pliz @@ -0,0 +1,4 @@ +L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 diff --git a/tests/data/input/source-sink/leftsor-5-columns.pliz b/tests/data/input/source-sink/leftsor-5-columns.pliz new file mode 100644 index 000000000..a3006d269 --- /dev/null +++ b/tests/data/input/source-sink/leftsor-5-columns.pliz @@ -0,0 +1,4 @@ +L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 diff --git a/tests/data/input/source-sink/leftsor.pliz b/tests/data/input/source-sink/leftsor.pliz new file mode 100644 index 000000000..6229db067 --- /dev/null +++ b/tests/data/input/source-sink/leftsor.pliz @@ -0,0 +1,4 @@ +L1 + 2 3 + 63.350456 12.950216 -4.200000 + 45.200344 6.350155 -3.000 diff --git a/tests/data/input/source-sink/leftsor.tim b/tests/data/input/source-sink/leftsor.tim new file mode 100644 index 000000000..95fe41e5b --- /dev/null +++ b/tests/data/input/source-sink/leftsor.tim @@ -0,0 +1,5 @@ +0.0 1.0 2.0 3.0 4.0 +100 1.0 2.0 3.0 4.0 +200 1.0 2.0 3.0 4.0 +300 1.0 2.0 3.0 4.0 +400 1.0 2.0 3.0 4.0 diff --git a/tests/data/input/source-sink/no_temperature_no_salinity.tim b/tests/data/input/source-sink/no_temperature_no_salinity.tim new file mode 100644 index 000000000..b665a88be --- /dev/null +++ b/tests/data/input/source-sink/no_temperature_no_salinity.tim @@ -0,0 +1,5 @@ +0.0 1.0 4.0 +100 1.0 4.0 +200 1.0 4.0 +300 1.0 4.0 +400 1.0 4.0 diff --git a/tests/data/input/source-sink/no_temperature_or_salinity.tim b/tests/data/input/source-sink/no_temperature_or_salinity.tim new file mode 100644 index 000000000..cddc20667 --- /dev/null +++ b/tests/data/input/source-sink/no_temperature_or_salinity.tim @@ -0,0 +1,5 @@ +0.0 1.0 3.0 4.0 +100 1.0 3.0 4.0 +200 1.0 3.0 4.0 +300 1.0 3.0 4.0 +400 1.0 3.0 4.0 diff --git a/tests/data/input/source-sink/source-sink.ext b/tests/data/input/source-sink/source-sink.ext new file mode 100644 index 000000000..9d2df1d9f --- /dev/null +++ b/tests/data/input/source-sink/source-sink.ext @@ -0,0 +1,82 @@ +* QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 +* : outflowbnd, neumannbnd, qhbnd filetype=9 method=2,3 +* : salinitybnd filetype=9 method=2,3 +* : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 +* : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype, ibotlevtype filetype=4,7,10 method=4 +* : initialwaterlevel filetype=4,7,10,12 method=4,5 +* : initialtemperature filetype=4,7,10,12 method=4,5 +* : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or +* : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 +* : initialverticaltemperatureprofile filetype=9,10 method= +* : initialverticalsalinityprofile filetype=9,10 method= +* : windx, windy, windxy, rainfall_mmperday, atmosphericpressure filetype=1,2,4,7,8 method=1,2,3 +* : shiptxy, movingstationtxy filetype=1 method=1 +* +* kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 +* FILETYPE=1 : uniform kx = 1 value 1 dim array uni +* FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 +* FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation +* FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct +* FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw +* FILETYPE=6 : curvi kx = ? bilin/findnm +* FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation +* FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations +* +* FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as +* timeseries or Fourier components or tidal constituents +* Timeseries are in files *_000i.tim, two columns: time (min) values +* Fourier components and or tidal constituents are in files *_000i.cmp, three columns +* period (min) or constituent name (e.g. M2), amplitude and phase (deg) +* If no file is specified for a node, its value will be interpolated from surrounding nodes +* If only one signal file is specified, the boundary gets a uniform signal +* For a dischargebnd, only one signal file must be specified +* +* FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields +* FILETYPE=11 : ncgrid currently not in use +* FILETYPE=12 : ncflow kx = 1 field 1 dim array triangulation +* +* METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation +* =1 : intp space and time (getval) keep 2 meteofields in memory +* =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory +* =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. +* =4 : only spatial, inside polygon +* =5 : only spatial, triangulation +* =6 : only spatial, averaging +* =7 : only spatial, index triangulation +* =8 : only spatial, smoothing +* =9 : only spatial, internal diffusion +* =10 : only initial vertical profiles +* +* OPERAND =O : Override at all points +* =+ : Add to previously specified value +* =* : Multiply with previously specified value +* =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) +* +* VALUE = : Offset value for this provider +* +* FACTOR = : Conversion factor for this provider +* +************************************************************************************************************** + +QUANTITY=initialtemperature +FILENAME=right.pol +FILETYPE=10 +METHOD=4 +OPERAND=O +VALUE=11. + + +QUANTITY=initialsalinity +FILENAME=right.pol +FILETYPE=10 +METHOD=4 +OPERAND=O +VALUE=11. + + +QUANTITY=discharge_salinity_temperature_sorsin +FILENAME=leftsor.pliz +FILETYPE=9 +METHOD=1 +OPERAND=O +AREA=1.0 diff --git a/tests/data/input/source-sink/tim-3-columns.tim b/tests/data/input/source-sink/tim-3-columns.tim new file mode 100644 index 000000000..d635cab84 --- /dev/null +++ b/tests/data/input/source-sink/tim-3-columns.tim @@ -0,0 +1,5 @@ +0.0 1.0 2.0 3.0 +100 1.0 2.0 3.0 +200 1.0 2.0 3.0 +300 1.0 2.0 3.0 +400 1.0 2.0 3.0 diff --git a/tests/dflowfm/ext/test_ext.py b/tests/dflowfm/ext/test_ext.py index bc55c8e9a..2d660c014 100644 --- a/tests/dflowfm/ext/test_ext.py +++ b/tests/dflowfm/ext/test_ext.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import List +from typing import Any, Dict, List import numpy as np import pytest @@ -12,6 +12,7 @@ Meteo, MeteoForcingFileType, MeteoInterpolationMethod, + SourceSink, ) from hydrolib.core.dflowfm.tim.models import TimModel @@ -213,3 +214,83 @@ def test_initialize_with_time_series_file(self, time_series_file: Path): assert isinstance(meteo.forcingfile, TimModel) assert meteo.forcingfile.filepath == time_series_file assert meteo.forcingfiletype == MeteoForcingFileType.bcascii + + +class TestSourceSink: + + @pytest.fixture + def source_sink_data(self) -> Dict[str, Any]: + data = { + "id": "L1", + "name": "discharge_salinity_temperature_sorsin", + "locationfile": Path("tests/data/input/source-sink/leftsor.pliz"), + "numcoordinates": 2, + "xcoordinates": [63.350456, 45.200344], + "ycoordinates": [12.950216, 6.350155], + "zsource": -3.0, + "zsink": -4.2, + "discharge": 1.1234, + "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], + "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], + "area": 5, + } + return data + + def test_default(self, source_sink_data: Dict[str, Any]): + """ + Test construct the SourceSink class with all the attributes. + """ + + source_sink = SourceSink(**source_sink_data) + + # only the comments key is added by default here + assert source_sink.__dict__.keys() - source_sink_data.keys() == {"comments"} + + def test_extra_tracer(self, source_sink_data: Dict[str, Any]): + """ + Test construct the SourceSink class with an extra initialtracer-*** dynamically assigned field. + """ + source_sink_data["initialtracer_any_name"] = [1, 2, 3] + source_sink = SourceSink(**source_sink_data) + + # only the comments key is added by default here + assert source_sink.__dict__.keys() - source_sink_data.keys() == {"comments"} + assert source_sink.initialtracer_any_name == [1, 2, 3] + + def test_multiple_dynamic_fields(self, source_sink_data: Dict[str, Any]): + """ + Test construct the SourceSink class with an extra initialtracer-*** dynamically assigned field. + """ + source_sink_data["initialtracer_any_name"] = [1, 2, 3] + source_sink_data["tracerbndanyname"] = [1, 2, 3] + source_sink_data["sedfracbnd_any_name"] = [1, 2, 3] + source_sink = SourceSink(**source_sink_data) + + # only the comments key is added by default here + assert source_sink.__dict__.keys() - source_sink_data.keys() == {"comments"} + assert source_sink.initialtracer_any_name == [1, 2, 3] + assert source_sink.tracerbndanyname == [1, 2, 3] + assert source_sink.sedfracbnd_any_name == [1, 2, 3] + + def test_time_series_discharge_case(self): + """ + + Returns: + + """ + data = { + "id": "L1", + "name": "discharge_salinity_temperature_sorsin", + "locationfile": "tests/data/input/source-sink/leftsor.pliz", + "numcoordinates": 2, + "xcoordinates": [63.350456, 45.200344], + "ycoordinates": [12.950216, 6.350155], + "zsource": -3.0, + "zsink": -4.2, + "discharge": [1.0, 2.0, 3.0, 5.0, 8.0], + "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], + "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], + } + + source_sink = SourceSink(**data) + print(source_sink) diff --git a/tests/dflowfm/extold/__init__.py b/tests/dflowfm/extold/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/tests/dflowfm/extold/test_ext_forcing.py b/tests/dflowfm/extold/test_ext_forcing.py new file mode 100644 index 000000000..521868463 --- /dev/null +++ b/tests/dflowfm/extold/test_ext_forcing.py @@ -0,0 +1,667 @@ +from pathlib import Path +from typing import List + +import pytest + +from hydrolib.core.basemodel import DiskOnlyFileModel +from hydrolib.core.dflowfm.common.models import Operand +from hydrolib.core.dflowfm.extold.models import ( + ExtOldExtrapolationMethod, + ExtOldFileType, + ExtOldForcing, + ExtOldMethod, + ExtOldModel, + ExtOldQuantity, + ExtOldTracerQuantity, +) +from hydrolib.core.dflowfm.polyfile.models import PolyFile +from hydrolib.core.dflowfm.tim.models import TimModel + + +class TestExtForcing: + def test_initialize_with_old_external_forcing_file( + self, + old_forcing_file: Path, + old_forcing_file_quantities: List[str], + old_forcing_comment_len: int, + ): + model = ExtOldModel(old_forcing_file) + assert isinstance(model, ExtOldModel) + assert len(model.comment) == old_forcing_comment_len + assert len(model.forcing) == len(old_forcing_file_quantities) + forcing_1 = model.forcing[0] + assert isinstance(forcing_1, ExtOldForcing) + quantities = [forcing.quantity for forcing in model.forcing] + assert all([quantity in old_forcing_file_quantities for quantity in quantities]) + + def test_initialize_with_timfile_initializes_timmodel(self, input_files_dir: Path): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=input_files_dir.joinpath("tim/triple_data_for_timeseries.tim"), + filetype=ExtOldFileType.TimeSeries, + method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, + operand=Operand.override, + ) + + assert isinstance(forcing.filename, TimModel) + + def test_initialize_with_polyfile_initializes_polyfile(self, input_files_dir: Path): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=input_files_dir.joinpath("dflowfm_individual_files/test.pli"), + filetype=ExtOldFileType.Polyline, + method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, + operand=Operand.override, + ) + + assert isinstance(forcing.filename, PolyFile) + + def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel( + self, input_files_dir: Path + ): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=input_files_dir.joinpath("file_load_test/FlowFM_net.nc"), + filetype=ExtOldFileType.NetCDFGridData, + method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, + operand=Operand.override, + ) + + assert isinstance(forcing.filename, DiskOnlyFileModel) + + +class TestValidateQuantity: + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_string_equal_casing(self, quantity): + quantity_str = quantity.value + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity + + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_string_different_casing(self, quantity): + quantity_str = quantity.value.upper() + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity + + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_enum(self, quantity): + forcing = ExtOldForcing( + quantity=quantity, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity + + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_tracerquantity_appended_with_tracer_name(self, quantity): + quantity_str = quantity + "Some_Tracer_Name" + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity_str + + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_just_a_tracerquantity_raises_error(self, quantity): + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, filename="", filetype=9, method=1, operand="O" + ) + + exp_error = ( + f"QUANTITY '{quantity.value}' should be appended with a tracer name." + ) + assert exp_error in str(error.value) + + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_tracerquantity_string_without_tracer_name_raises_error( + self, quantity + ): + quantity_str = quantity.value + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity_str, + filename="", + filetype=9, + method=1, + operand="O", + ) + + assert ( + f"QUANTITY '{quantity_str}' should be appended with a tracer name." + in str(error.value) + ) + + def test_with_invalid_quantity_string_raises_value_error( + self, + ): + quantity_str = "invalid" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity_str, + filename="", + filetype=9, + method=1, + operand="O", + ) + + supported_values_str = ", ".join(([x.value for x in ExtOldQuantity])) + assert ( + f"QUANTITY 'invalid' not supported. Supported values: {supported_values_str}" + in str(error.value) + ) + + +class TestValidateOperand: + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_string_equal_casing(self, operand): + operand_str = operand.value + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + assert forcing.operand == operand + + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_string_different_casing(self, operand): + operand_str = operand.value.lower() + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + assert forcing.operand == operand + + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_enum(self, operand): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand, + ) + assert forcing.operand == operand + + def test_with_invalid_operand_string_raises_value_error( + self, + ): + operand_str = "invalid" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + + supported_values_str = ", ".join(([x.value for x in Operand])) + assert ( + f"OPERAND 'invalid' not supported. Supported values: {supported_values_str}" + in str(error.value) + ) + + +class TestValidateVarName: + def test_validate_varname_with_valid_filetype_11(self): + filetype = 11 + varname = "some_varname" + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + varname=varname, + filetype=filetype, + method=1, + operand="O", + ) + + assert forcing.varname == varname + + def test_validate_varname_with_invalid_filetype(self): + filetype = 9 + varname = "some_varname" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + varname=varname, + filetype=filetype, + method=1, + operand="O", + ) + + exp_msg = "VARNAME only allowed when FILETYPE is 11" + assert exp_msg in str(error.value) + + +class TestValidateSourceMask: + @pytest.mark.parametrize("filetype", [4, 6]) + def test_validate_sourcemask_with_valid_filetype_4_or_6(self, filetype): + sourcemask = "sourcemask.file" + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + sourcemask=sourcemask, + filetype=filetype, + method=1, + operand="O", + ) + + assert forcing.sourcemask.filepath.name == sourcemask + + def test_validate_sourcemask_with_invalid_filetype(self): + filetype = 9 + sourcemask = "sourcemask.file" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + sourcemask=sourcemask, + filetype=filetype, + method=1, + operand="O", + ) + + exp_msg = "SOURCEMASK only allowed when FILETYPE is 4 or 6" + assert exp_msg in str(error.value) + + +class TestValidateExtrapolationMethod: + def test_validate_extrapolation_method_with_valid_method_3(self): + method = 3 + extrapolation_method = ( + ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox + ) + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + extrapolation_method=extrapolation_method, + operand="O", + ) + + assert forcing.extrapolation_method == extrapolation_method + + def test_validate_extrapolation_method_with_invalid_method(self): + method = 1 + extrapolation_method = ( + ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox + ) + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + extrapolation_method=extrapolation_method, + operand="O", + ) + + exp_msg = "EXTRAPOLATION_METHOD only allowed to be 1 when METHOD is 3" + assert exp_msg in str(error.value) + + +class TestValidateMaxSearchRadius: + def test_validate_maxsearchradius_method_with_valid_extrapolation_method_1( + self, + ): + extrapolation_method = 1 + maxsearchradius = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.AirPressureWindXWindY, + filename="", + filetype=3, + method=3, + extrapolation_method=extrapolation_method, + maxsearchradius=maxsearchradius, + operand="O", + ) + + assert forcing.extrapolation_method == extrapolation_method + + def test_validate_maxsearchradius_method_with_invalid_extrapolation_method( + self, + ): + extrapolation_method = 0 + maxsearchradius = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.AirPressureWindXWindY, + filename="", + filetype=3, + method=3, + extrapolation_method=extrapolation_method, + maxsearchradius=maxsearchradius, + operand="O", + ) + + exp_msg = "MAXSEARCHRADIUS only allowed when EXTRAPOLATION_METHOD is 1" + assert exp_msg in str(error.value) + + +class TestValidateValue: + def test_validate_value_with_valid_method_4(self): + method = 4 + value = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + value=value, + ) + + assert forcing.value == pytest.approx(value) + + def test_validate_sourcemask_with_invalid_method(self): + method = 1 + value = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + value=value, + ) + + exp_msg = "VALUE only allowed when METHOD is 4" + assert exp_msg in str(error.value) + + +class TestValidateFactor: + def test_validate_factor_with_valid_quantity_initialtracer(self): + quantity = ExtOldTracerQuantity.InitialTracer + "Some_Tracer_Name" + factor = 1.23 + + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + factor=factor, + ) + + assert forcing.factor == pytest.approx(factor) + + def test_validate_factor_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + factor = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + factor=factor, + ) + + exp_msg = "FACTOR only allowed when QUANTITY starts with initialtracer" + assert exp_msg in str(error.value) + + +class TestValidateIFrcTyp: + def test_validate_ifrctyp_with_valid_quantity_frictioncoefficient(self): + quantity = ExtOldQuantity.FrictionCoefficient + ifrctyp = 1.23 + + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + ifrctyp=ifrctyp, + ) + + assert forcing.ifrctyp == pytest.approx(ifrctyp) + + def test_validate_ifrctyp_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + ifrctyp = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + ifrctyp=ifrctyp, + ) + + exp_msg = "IFRCTYP only allowed when QUANTITY is frictioncoefficient" + assert exp_msg in str(error.value) + + +class TestValidateAveragingType: + def test_validate_averagingtype_with_valid_method_6(self): + method = 6 + averagingtype = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + averagingtype=averagingtype, + ) + + assert forcing.averagingtype == pytest.approx(averagingtype) + + def test_validate_averagingtype_with_invalid_method(self): + method = 1 + averagingtype = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + averagingtype=averagingtype, + ) + + exp_msg = "AVERAGINGTYPE only allowed when METHOD is 6" + assert exp_msg in str(error.value) + + +class TestValidateRelativeSearchCellSize: + def test_validate_relativesearchcellsize_with_valid_method_6(self): + method = 6 + relativesearchcellsize = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + relativesearchcellsize=relativesearchcellsize, + ) + + assert forcing.relativesearchcellsize == pytest.approx(relativesearchcellsize) + + def test_validate_relativesearchcellsize_with_invalid_method(self): + method = 1 + relativesearchcellsize = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + relativesearchcellsize=relativesearchcellsize, + ) + + exp_msg = "RELATIVESEARCHCELLSIZE only allowed when METHOD is 6" + assert exp_msg in str(error.value) + + +class TestValidateExtrapolTol: + def test_validate_extrapoltol_with_valid_method_5(self): + method = 5 + extrapoltol = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + extrapoltol=extrapoltol, + ) + + assert forcing.extrapoltol == pytest.approx(extrapoltol) + + def test_validate_extrapoltol_with_invalid_method(self): + method = 1 + extrapoltol = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + extrapoltol=extrapoltol, + ) + + exp_msg = "EXTRAPOLTOL only allowed when METHOD is 5" + assert exp_msg in str(error.value) + + +class TestValidatePercentileMinMax: + def test_validate_percentileminmax_with_valid_method_6(self): + method = 6 + percentileminmax = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + percentileminmax=percentileminmax, + ) + + assert forcing.percentileminmax == pytest.approx(percentileminmax) + + def test_validate_percentileminmax_with_invalid_method(self): + method = 1 + percentileminmax = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + percentileminmax=percentileminmax, + ) + + exp_msg = "PERCENTILEMINMAX only allowed when METHOD is 6" + assert exp_msg in str(error.value) + + +class TestValidateArea: + def test_validate_area_with_valid_quantity_discharge_salinity_temperature_sorsin( + self, + ): + quantity = ExtOldQuantity.DischargeSalinityTemperatureSorSin + area = 1.23 + + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + area=area, + ) + + assert forcing.area == pytest.approx(area) + + def test_validate_area_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + area = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + area=area, + ) + + exp_msg = ( + "AREA only allowed when QUANTITY is discharge_salinity_temperature_sorsin" + ) + assert exp_msg in str(error.value) + + +class TestValidateNumMin: + def test_validate_nummin_with_valid_method_6(self): + method = 6 + nummin = 123 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + nummin=nummin, + ) + + assert forcing.nummin == nummin + + def test_validate_nummin_with_invalid_method(self): + method = 1 + nummin = 123 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + nummin=nummin, + ) + + exp_msg = "NUMMIN only allowed when METHOD is 6" + assert exp_msg in str(error.value) diff --git a/tests/dflowfm/extold/test_extold.py b/tests/dflowfm/extold/test_extold.py new file mode 100644 index 000000000..021bdbd60 --- /dev/null +++ b/tests/dflowfm/extold/test_extold.py @@ -0,0 +1,438 @@ +import copy +from pathlib import Path +from typing import List + +import pytest + +from hydrolib.core.basemodel import ( + DiskOnlyFileModel, + ModelSaveSettings, + SerializerConfig, +) +from hydrolib.core.dflowfm.common.models import Operand +from hydrolib.core.dflowfm.extold.models import ( + HEADER, + INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES, + ExtOldFileType, + ExtOldForcing, + ExtOldInitialConditionQuantity, + ExtOldMethod, + ExtOldModel, + ExtOldParametersQuantity, + ExtOldQuantity, + ExtOldSourcesSinks, +) +from hydrolib.core.dflowfm.extold.parser import Parser +from hydrolib.core.dflowfm.extold.serializer import Serializer +from tests.utils import assert_files_equal, create_temp_file_from_lines, get_temp_file + +quantities_with_prefixes = copy.deepcopy(INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES) +quantities_with_prefixes = [ + f"{quantity}-suffix" for quantity in quantities_with_prefixes +] +EXP_HEADER = """ + QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 + : outflowbnd, neumannbnd, qhbnd, uxuyadvectionvelocitybnd filetype=9 method=2,3 + : salinitybnd filetype=9 method=2,3 + : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 + : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype filetype=4,7,10 method=4 + : bedlevel, ibotlevtype filetype=4,7,10 method=4..9 + : initialwaterlevel filetype=4,7,10,12 method=4..9 + : initialtemperature filetype=4,7,10,12 method=4..9 + : initialvelocityx, initialvelocityy filetype=4,7,10,12 method=4..9 + : initialvelocity filetype=12 method=4..9 + : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or + : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 + : initialverticaltemperatureprofile filetype=9,10 method= + : initialverticalsalinityprofile filetype=9,10 method= + : windx, windy, windxy, rainfall, atmosphericpressure filetype=1,2,4,6,7,8 method=1,2,3 + : shiptxy, movingstationtxy filetype=1 method=1 + : discharge_salinity_temperature_sorsin filetype=9 method=1 + : windstresscoefficient filetype=4,7,10 method=4 + : nudge_salinity_temperature filetype=11 method=3 + + kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 + FILETYPE=1 : uniform kx = 1 value 1 dim array uni + FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 + FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation + FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct + FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw + FILETYPE=6 : curvi kx = ? bilin/findnm + FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation + FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations + + FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as + timeseries or Fourier components or tidal constituents + Timeseries are in files *_000i.tim, two columns: time (min) values + Fourier components and or tidal constituents are in files *_000i.cmp, three columns + period (min) or constituent name (e.g. M2), amplitude and phase (deg) + If no file is specified for a node, its value will be interpolated from surrounding nodes + If only one signal file is specified, the boundary gets a uniform signal + For a dischargebnd, only one signal file must be specified + + FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields + FILETYPE=11 : ncgrid kx = 1 field 2 dim array triangulation (should have proper standard_name in var, e.g., 'precipitation') + FILETYPE=12 : ncflow (map file) kx = 1 or 2 field 1 dim array triangulation + FILETYPE=14 : ncwave (com file) kx = 1 field 1 dim array triangulation + + METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation + =1 : intp space and time (getval) keep 2 meteofields in memory + =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory + =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. + =4 : only spatial, inside polygon + =5 : only spatial, triangulation, (if samples from *.asc file then bilinear) + =6 : only spatial, averaging + =7 : only spatial, index triangulation + =8 : only spatial, smoothing + =9 : only spatial, internal diffusion + =10 : only initial vertical profiles + + OPERAND =O : Override at all points + =+ : Add to previously specified value + =* : Multiply with previously specified value + =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) + =X : MAX with prev. spec. + =N : MIN with prev. spec. + + EXTRAPOLATION_METHOD (ONLY WHEN METHOD=3) + = 0 : No spatial extrapolation. + = 1 : Do spatial extrapolation outside of source data bounding box. + + MAXSEARCHRADIUS (ONLY WHEN EXTRAPOLATION_METHOD=1) + = search radius (in m) for model grid points that lie outside of the source data bounding box. + + AVERAGINGTYPE (ONLY WHEN METHOD=6) + =1 : SIMPLE AVERAGING + =2 : NEAREST NEIGHBOUR + =3 : MAX (HIGHEST) + =4 : MIN (LOWEST) + =5 : INVERSE WEIGHTED DISTANCE-AVERAGE + =6 : MINABS + =7 : KDTREE (LIKE 1, BUT FAST AVERAGING) + + RELATIVESEARCHCELLSIZE : For METHOD=6, the relative search cell size for samples inside cell (default: 1.01) + + PERCENTILEMINMAX : (ONLY WHEN AVERAGINGTYPE=3 or 4) Changes the min/max operator to an average of the + highest/lowest data points. The value sets the percentage of the total set that is to be included. + + NUMMIN = : For METHOD=6, minimum required number of source data points in each target cell. + + VALUE = : Offset value for this provider + + FACTOR = : Conversion factor for this provider + +************************************************************************************************************* +""" + + +class TestExtOldModel: + def test_header(self): + assert HEADER == EXP_HEADER + + def test_initialization(self): + model = ExtOldModel() + + assert model.comment == HEADER.splitlines()[1:] + assert len(model.forcing) == 0 + + def test_load_model(self): + file_content = [ + "* This is a comment", + "* This is a comment", + "", + "QUANTITY=internaltidesfrictioncoefficient", + "FILENAME=surroundingDomain.pol", + "FILETYPE=11", + "METHOD=4", + "OPERAND=+", + "VALUE=0.0125", + "", + "* This is a comment", + "", + "QUANTITY=waterlevelbnd", + "FILENAME=OB_001_orgsize.pli", + "FILETYPE=9", + "METHOD=3", + "* This is a comment", + "OPERAND=O", + "* This is a comment", + ] + + with create_temp_file_from_lines( + file_content, "test_load_model_two_blocks.ext" + ) as temp_file: + model = ExtOldModel(filepath=temp_file) + + # Assert correct comments + assert len(model.comment) == 3 + exp_comments = [" This is a comment", " This is a comment", ""] + assert model.comment == exp_comments + + assert model.quantities == ["internaltidesfrictioncoefficient", "waterlevelbnd"] + + # Assert correct forcings + assert len(model.forcing) == 2 + + forcing_1 = model.forcing[0] + assert forcing_1.quantity == ExtOldQuantity.InternalTidesFrictionCoefficient + assert forcing_1.filename.filepath == Path("surroundingDomain.pol") + assert forcing_1.varname is None + assert forcing_1.sourcemask.filepath is None + assert forcing_1.filetype == ExtOldFileType.NetCDFGridData + assert forcing_1.method == ExtOldMethod.InterpolateSpace + assert forcing_1.operand == Operand.add + assert forcing_1.value == pytest.approx(0.0125) + assert forcing_1.factor is None + assert forcing_1.ifrctyp is None + assert forcing_1.averagingtype is None + assert forcing_1.relativesearchcellsize is None + assert forcing_1.extrapoltol is None + assert forcing_1.percentileminmax is None + assert forcing_1.area is None + assert forcing_1.nummin is None + + forcing_2 = model.forcing[1] + assert forcing_2.quantity == ExtOldQuantity.WaterLevelBnd + assert forcing_2.filename.filepath == Path("OB_001_orgsize.pli") + assert forcing_2.varname is None + assert forcing_2.sourcemask.filepath is None + assert forcing_2.filetype == ExtOldFileType.Polyline + assert forcing_2.method == ExtOldMethod.InterpolateTimeAndSpaceSaveWeights + assert forcing_2.operand == Operand.override + assert forcing_2.value is None + assert forcing_2.factor is None + assert forcing_2.ifrctyp is None + assert forcing_2.averagingtype is None + assert forcing_2.relativesearchcellsize is None + assert forcing_2.extrapoltol is None + assert forcing_2.percentileminmax is None + assert forcing_2.area is None + assert forcing_2.nummin is None + + def test_save_model(self): + + exp_file_content = [ + "*This is a comment", + "*This is a comment", + "*", + "QUANTITY=internaltidesfrictioncoefficient", + "FILENAME=surroundingDomain.pol", + "FILETYPE=11", + "METHOD=4", + "OPERAND=+", + "VALUE=0.012500", + "", + "QUANTITY=waterlevelbnd", + "FILENAME=OB_001_orgsize.pli", + "FILETYPE=9", + "METHOD=3", + "OPERAND=O", + ] + + comments = ["This is a comment", "This is a comment", ""] + + forcing_1 = ExtOldForcing( + quantity=ExtOldQuantity.InternalTidesFrictionCoefficient, + filename=Path("surroundingDomain.pol"), + filetype=ExtOldFileType.NetCDFGridData, + method=ExtOldMethod.InterpolateSpace, + operand=Operand.add, + value=0.0125, + ) + + forcing_2 = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=Path("OB_001_orgsize.pli"), + filetype=ExtOldFileType.Polyline, + method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, + operand=Operand.override, + ) + + model = ExtOldModel(comment=comments, forcing=[forcing_1, forcing_2]) + + model.serializer_config.float_format = "f" + + with get_temp_file("test_save_model.ext") as file: + model.save(filepath=file) + + with create_temp_file_from_lines( + exp_file_content, "test_save_model_expected.ext" + ) as exp_file: + assert_files_equal(file, exp_file) + + +class TestParser: + def test_parse_two_blocks_parses_to_the_correct_dictionaries(self): + file_content = [ + "* This is a comment", + "* This is a comment", + "", + "QUANTITY=internaltidesfrictioncoefficient", + "FILENAME=surroundingDomain.pol", + "FILETYPE=11", + "METHOD=4", + "OPERAND=+", + "VALUE=0.0125", + "", + "* This is a comment", + "", + "QUANTITY=waterlevelbnd", + "FILENAME=OB_001_orgsize.pli", + "FILETYPE=9", + "METHOD=3", + "* This is a comment", + "OPERAND=O", + "* This is a comment", + ] + + parser = Parser() + + with create_temp_file_from_lines(file_content, "two_blocks.ext") as temp_file: + data = parser.parse(filepath=temp_file) + + exp_data = { + "comment": [" This is a comment", " This is a comment", ""], + "forcing": [ + { + "QUANTITY": "internaltidesfrictioncoefficient", + "FILENAME": "surroundingDomain.pol", + "FILETYPE": "11", + "METHOD": "4", + "OPERAND": "+", + "VALUE": "0.0125", + }, + { + "QUANTITY": "waterlevelbnd", + "FILENAME": "OB_001_orgsize.pli", + "FILETYPE": "9", + "METHOD": "3", + "OPERAND": "O", + }, + ], + } + + assert data == exp_data + + def test_parse_block_with_incorrect_order_raises_error(self): + file_lines = [ + "FILENAME=surroundingDomain.pol", + "QUANTITY=internaltidesfrictioncoefficient", + "FILETYPE=11", + "OPERAND=+", + "VALUE=0.0125", + "QUANTITY=internaltidesfrictioncoefficient", + ] + + parser = Parser() + + with create_temp_file_from_lines( + file_lines, "incorrect_order.ext" + ) as temp_file: + with pytest.raises(ValueError) as error: + parser.parse(filepath=temp_file) + + exp_error = "Line 1: Properties should be in the following order: QUANTITY, FILENAME, FILETYPE, OPERAND, VALUE" + assert str(error.value) == exp_error + + +class TestSerializer: + def test_serialize(self): + exp_file_content = [ + "*This is a comment", + "*This is a comment", + "*", + "QUANTITY=internaltidesfrictioncoefficient", + "FILENAME=surroundingDomain.pol", + "FILETYPE=11", + "METHOD=4", + "OPERAND=+", + "VALUE=0.012500", + "", + "QUANTITY=waterlevelbnd", + "FILENAME=OB_001_orgsize.pli", + "FILETYPE=9", + "METHOD=3", + "OPERAND=O", + ] + + comments = ["This is a comment", "This is a comment", ""] + + forcing_1 = { + "quantity": "internaltidesfrictioncoefficient", + "filename": DiskOnlyFileModel(Path("surroundingDomain.pol")), + "filetype": 11, + "method": 4, + "operand": "+", + "value": 0.0125, + } + + forcing_2 = { + "quantity": "waterlevelbnd", + "filename": DiskOnlyFileModel(Path("OB_001_orgsize.pli")), + "filetype": 9, + "method": 3, + "operand": "O", + } + + forcing_data = {"comment": comments, "forcing": [forcing_1, forcing_2]} + + serializer_config = SerializerConfig(float_format="f") + save_settings = ModelSaveSettings() + + with get_temp_file("test_serialize.ext") as file: + Serializer.serialize(file, forcing_data, serializer_config, save_settings) + + with create_temp_file_from_lines( + exp_file_content, "test_serialize_expected.ext" + ) as exp_file: + assert_files_equal(file, exp_file) + + +class TestOldInitialConditionQuantity: + + def test_ext_old_initial_condition_quantity(self, initial_condition_quantities): + """ + Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. + """ + assert len(ExtOldInitialConditionQuantity) == len(initial_condition_quantities) + assert all( + quantity.value in initial_condition_quantities + for quantity in ExtOldInitialConditionQuantity.__members__.values() + ) + + def test_the_missing_method(self): + """ + Test the missing method in the ExtOldInitialConditionQuantity enum with a ValueError. + """ + with pytest.raises(ValueError): + ExtOldInitialConditionQuantity("missing_method") + + @pytest.mark.parametrize("qunatity_name", quantities_with_prefixes) + def test_the_missing_method_with_tracers(self, qunatity_name): + """ + Test the missing method in the ExtOldInitialConditionQuantity enum with a quantity that starts the quantities in the . + """ + quantity = ExtOldInitialConditionQuantity(qunatity_name) + assert quantity.value == qunatity_name + + +def test_ext_old_parameter_quantity(parameter_quantities: List[str]): + """ + Test the number of parameter quantities in the ExtOldParametersQuantity enum. + """ + assert len(ExtOldParametersQuantity) == len(parameter_quantities) + assert all( + quantity.value in parameter_quantities + for quantity in ExtOldParametersQuantity.__members__.values() + ) + + +def test_ext_old_source_sinks(): + """ + Test the number of source/sinks in the ExtOldSourceSink enum. + """ + assert len(ExtOldSourcesSinks) == 1 + assert all( + quantity.value in ["discharge_salinity_temperature_sorsin"] + for quantity in ExtOldSourcesSinks.__members__.values() + ) diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index 5ec7b4cef..90b272e27 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -1,3 +1,9 @@ +""" +- To read the z values correctly, the dimensions should be 2*3 and the extension should be pliz. +- If the file is .pliz and the dimensions are 2*2, the parser will give an error. +- If the file is .pli and the dimensions are 2*3, the parser will ignore the z values. +""" + from pathlib import Path import pytest @@ -15,11 +21,13 @@ def test_with_label(polylines_dir: Path): 0.00000000000000000 0.00000000000000000 #zee 0.00000000000000000 2.00000000000000000 #zee """ - path = polylines_dir.joinpath("boundary-polyline-no-z-with-label.pli") + path = polylines_dir / "boundary-polyline-no-z-with-label.pli" polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path assert polyline.save_location == path.absolute() + assert polyline.x == [0, 0] + assert polyline.y == [0, 2] def test_without_z(polylines_dir: Path): @@ -30,7 +38,7 @@ def test_without_z(polylines_dir: Path): -80 -50 -80 550 """ - path = polylines_dir.joinpath("boundary-polyline-no-z-no-label.pli") + path = polylines_dir / "boundary-polyline-no-z-no-label.pli" polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -38,18 +46,20 @@ def test_without_z(polylines_dir: Path): points = polyline.objects[0].points assert points[0] == Point(x=-80, y=-50, z=None, data=[]) assert points[1] == Point(x=-80, y=550, z=None, data=[]) + assert polyline.x == [-80, -80] + assert polyline.y == [-50, 550] -def test_with_z_and_pli_extension(polylines_dir: Path): +def test_with_z_and_pli_extension_2by2(polylines_dir: Path): """ - The test check a 2*2 polyline file with z values but the extension is pli not pliz. + The test check a 2*2 polyline file with z values, but the extension is pli not pliz. the parser will ignore the z values and read the file as a normal polyline file. tfl_01 - 2 2 + 2 2 0.00000000000000000 0.00000000000000000 5 0.00000000000000000 2.00000000000000000 5 """ - path = polylines_dir.joinpath("boundary-polyline-with-z-no-label.pli") + path = polylines_dir / "boundary-polyline-with-z-no-label.pli" polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -57,18 +67,157 @@ def test_with_z_and_pli_extension(polylines_dir: Path): points = polyline.objects[0].points assert points[0] == Point(x=0, y=0, z=None, data=[]) assert points[1] == Point(x=0, y=2, z=None, data=[]) + assert polyline.x == [0, 0] + assert polyline.y == [0, 2] -def test_with_z_and_pliz_extension(polylines_dir: Path): - """ - The test check a 2*2 polyline file with z values, the extension is correct but the dimensions are 2*2. - not 2*3 - the parser only reads the length of the dimensions in the second line and ignores the z values. - tfl_01 - 2 2 - 0.00000000000000000 0.00000000000000000 5 - 0.00000000000000000 2.00000000000000000 5 - """ - path = polylines_dir.joinpath("boundary-polyline-with-z-no-label.pliz") - with pytest.raises(ValueError): - PolyFile(path) +class TestGetZSourcesSinks: + def test_get_z_sources_sinks_single_value(self): + """ + The test case is based on the following assumptions: + - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. + ``` + zsink = -4.2 + zsource = -3 + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 + 45.20 6.35 -3.00 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor.pliz") + + z_source, z_sink = polyfile.get_z_sources_sinks() + assert z_source == [-3] + assert z_sink == [-4.2] + + def test_get_z_sources_sinks_multiple_values(self): + """ + The test case is based on the following assumptions: + - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the + third and forth columns' values, and if there is a fifth column it will be ignored. + ``` + zsink = [-4.2, -5.35] + zsource = [-3, -2.90] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 + ... + + ... + 45.20 6.35 -3.00 -2.90 + ``` + when there is a fifth column: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 0 + ... + + ... + 45.20 6.35 -3.00 -2.90 0 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") + + z_source, z_sink = polyfile.get_z_sources_sinks() + assert z_source == [-3, -2.90] + assert z_sink == [-4.2, -5.35] + + def test_get_z_sources_sinks_no_z_values(self, polylines_dir: Path): + """ + The test case is based on the following assumptions: + - The polyline has only two columns, so the zsink and zsource will have no values. + ``` + zsink = [] + zsource = [] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 2 + 63.35 12.95 + 45.20 6.35 + ``` + """ + path = polylines_dir / "boundary-polyline-no-z-no-label.pli" + polyfile = PolyFile(path) + + z_source, z_sink = polyfile.get_z_sources_sinks() + assert z_source == [None] + assert z_sink == [None] + + +class TestPLIZExtension: + + def test_with_z_and_pliz_extension_2by2(self, polylines_dir: Path): + """ + The test check a 2*2 polyline file with z values, the extension is correct, but the dimensions are 2*2. + not 2*3 + the parser only reads the length of the dimensions in the second line and ignores the z values. + ``` + tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 + ``` + + - To read the z values correctly, the dimensions should be 2*3, and the extension should be pliz. + """ + path = polylines_dir / "boundary-polyline-with-z-no-label.pliz" + with pytest.raises(ValueError): + PolyFile(path) + + def test_with_z_and_pliz_extension_2by3(self, polylines_dir: Path): + """ + The test check a 2*3, polyline file with z values, the extension is correct, and the dimensions are correct. + the parser only reads the length of the dimensions in the second line and ignores the z values. + ``` + tfl_01 + 2 3 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 + ``` + - To read the z values correctly, the dimensions should be 2*3 and the extension should be pliz. + """ + path = polylines_dir / "boundary-polyline-with-z-no-label-2by3.pliz" + polyfile = PolyFile(path) + points = polyfile.objects[0].points + assert len(polyfile.objects[0].points) == 2 + assert points[0] == Point(x=0, y=0, z=5, data=[]) + assert points[1] == Point(x=0, y=2, z=5, data=[]) + assert polyfile.x == [0, 0] + assert polyfile.y == [0, 2] + + def test_with_z_and_pliz_extension_2by5(self, polylines_dir: Path): + """ + The test check a 2*5 polyline file with z values in the third and fourth columns, the extension is correct, + but the dimensions are 2*5. + + ``` + L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 + ``` + + - The first three columns are the x, y, and z values. + The rest of the columns are the data values. + """ + path = polylines_dir / "leftsor-5-columns.pliz" + polyfile = PolyFile(path) + points = polyfile.objects[0].points + assert len(polyfile.objects[0].points) == 2 + assert points[0] == Point(x=63.35, y=12.95, z=-4.2, data=[-5.35, 0]) + assert points[1] == Point(x=45.2, y=6.35, z=-3, data=[-2.90, 0]) + assert polyfile.x == [63.35, 45.2] + assert polyfile.y == [12.95, 6.35] diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py deleted file mode 100644 index 22c60c39c..000000000 --- a/tests/dflowfm/test_extold.py +++ /dev/null @@ -1,1062 +0,0 @@ -import copy -from pathlib import Path -from typing import List - -import pytest - -from hydrolib.core.basemodel import ( - DiskOnlyFileModel, - ModelSaveSettings, - SerializerConfig, -) -from hydrolib.core.dflowfm.common.models import Operand -from hydrolib.core.dflowfm.extold.models import ( - HEADER, - INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES, - ExtOldExtrapolationMethod, - ExtOldFileType, - ExtOldForcing, - ExtOldInitialConditionQuantity, - ExtOldMethod, - ExtOldModel, - ExtOldParametersQuantity, - ExtOldQuantity, - ExtOldTracerQuantity, -) -from hydrolib.core.dflowfm.extold.parser import Parser -from hydrolib.core.dflowfm.extold.serializer import Serializer -from hydrolib.core.dflowfm.polyfile.models import PolyFile -from hydrolib.core.dflowfm.tim.models import TimModel -from tests.utils import assert_files_equal, create_temp_file_from_lines, get_temp_file - -quantities_with_prefixes = copy.deepcopy(INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES) -quantities_with_prefixes = [ - f"{quantity}-suffix" for quantity in quantities_with_prefixes -] -EXP_HEADER = """ - QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 - : outflowbnd, neumannbnd, qhbnd, uxuyadvectionvelocitybnd filetype=9 method=2,3 - : salinitybnd filetype=9 method=2,3 - : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 - : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype filetype=4,7,10 method=4 - : bedlevel, ibotlevtype filetype=4,7,10 method=4..9 - : initialwaterlevel filetype=4,7,10,12 method=4..9 - : initialtemperature filetype=4,7,10,12 method=4..9 - : initialvelocityx, initialvelocityy filetype=4,7,10,12 method=4..9 - : initialvelocity filetype=12 method=4..9 - : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or - : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 - : initialverticaltemperatureprofile filetype=9,10 method= - : initialverticalsalinityprofile filetype=9,10 method= - : windx, windy, windxy, rainfall, atmosphericpressure filetype=1,2,4,6,7,8 method=1,2,3 - : shiptxy, movingstationtxy filetype=1 method=1 - : discharge_salinity_temperature_sorsin filetype=9 method=1 - : windstresscoefficient filetype=4,7,10 method=4 - : nudge_salinity_temperature filetype=11 method=3 - - kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 - FILETYPE=1 : uniform kx = 1 value 1 dim array uni - FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 - FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation - FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct - FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw - FILETYPE=6 : curvi kx = ? bilin/findnm - FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation - FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations - - FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as - timeseries or Fourier components or tidal constituents - Timeseries are in files *_000i.tim, two columns: time (min) values - Fourier components and or tidal constituents are in files *_000i.cmp, three columns - period (min) or constituent name (e.g. M2), amplitude and phase (deg) - If no file is specified for a node, its value will be interpolated from surrounding nodes - If only one signal file is specified, the boundary gets a uniform signal - For a dischargebnd, only one signal file must be specified - - FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields - FILETYPE=11 : ncgrid kx = 1 field 2 dim array triangulation (should have proper standard_name in var, e.g., 'precipitation') - FILETYPE=12 : ncflow (map file) kx = 1 or 2 field 1 dim array triangulation - FILETYPE=14 : ncwave (com file) kx = 1 field 1 dim array triangulation - - METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation - =1 : intp space and time (getval) keep 2 meteofields in memory - =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory - =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. - =4 : only spatial, inside polygon - =5 : only spatial, triangulation, (if samples from *.asc file then bilinear) - =6 : only spatial, averaging - =7 : only spatial, index triangulation - =8 : only spatial, smoothing - =9 : only spatial, internal diffusion - =10 : only initial vertical profiles - - OPERAND =O : Override at all points - =+ : Add to previously specified value - =* : Multiply with previously specified value - =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) - =X : MAX with prev. spec. - =N : MIN with prev. spec. - - EXTRAPOLATION_METHOD (ONLY WHEN METHOD=3) - = 0 : No spatial extrapolation. - = 1 : Do spatial extrapolation outside of source data bounding box. - - MAXSEARCHRADIUS (ONLY WHEN EXTRAPOLATION_METHOD=1) - = search radius (in m) for model grid points that lie outside of the source data bounding box. - - AVERAGINGTYPE (ONLY WHEN METHOD=6) - =1 : SIMPLE AVERAGING - =2 : NEAREST NEIGHBOUR - =3 : MAX (HIGHEST) - =4 : MIN (LOWEST) - =5 : INVERSE WEIGHTED DISTANCE-AVERAGE - =6 : MINABS - =7 : KDTREE (LIKE 1, BUT FAST AVERAGING) - - RELATIVESEARCHCELLSIZE : For METHOD=6, the relative search cell size for samples inside cell (default: 1.01) - - PERCENTILEMINMAX : (ONLY WHEN AVERAGINGTYPE=3 or 4) Changes the min/max operator to an average of the - highest/lowest data points. The value sets the percentage of the total set that is to be included. - - NUMMIN = : For METHOD=6, minimum required number of source data points in each target cell. - - VALUE = : Offset value for this provider - - FACTOR = : Conversion factor for this provider - -************************************************************************************************************* -""" - - -class TestExtForcing: - def test_initialize_with_old_external_forcing_file( - self, - old_forcing_file: Path, - old_forcing_file_quantities: List[str], - old_forcing_comment_len: int, - ): - model = ExtOldModel(old_forcing_file) - assert isinstance(model, ExtOldModel) - assert len(model.comment) == old_forcing_comment_len - assert len(model.forcing) == len(old_forcing_file_quantities) - forcing_1 = model.forcing[0] - assert isinstance(forcing_1, ExtOldForcing) - quantities = [forcing.quantity for forcing in model.forcing] - assert all([quantity in old_forcing_file_quantities for quantity in quantities]) - - def test_initialize_with_timfile_initializes_timmodel(self, input_files_dir: Path): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename=input_files_dir.joinpath("tim/triple_data_for_timeseries.tim"), - filetype=ExtOldFileType.TimeSeries, - method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, - operand=Operand.override, - ) - - assert isinstance(forcing.filename, TimModel) - - def test_initialize_with_polyfile_initializes_polyfile(self, input_files_dir: Path): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename=input_files_dir.joinpath("dflowfm_individual_files/test.pli"), - filetype=ExtOldFileType.Polyline, - method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, - operand=Operand.override, - ) - - assert isinstance(forcing.filename, PolyFile) - - def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel( - self, input_files_dir: Path - ): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename=input_files_dir.joinpath("file_load_test/FlowFM_net.nc"), - filetype=ExtOldFileType.NetCDFGridData, - method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, - operand=Operand.override, - ) - - assert isinstance(forcing.filename, DiskOnlyFileModel) - - class TestValidateQuantity: - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_string_equal_casing(self, quantity): - quantity_str = quantity.value - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity - - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_string_different_casing(self, quantity): - quantity_str = quantity.value.upper() - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity - - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_enum(self, quantity): - forcing = ExtOldForcing( - quantity=quantity, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity - - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_tracerquantity_appended_with_tracer_name(self, quantity): - quantity_str = quantity + "Some_Tracer_Name" - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity_str - - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_just_a_tracerquantity_raises_error(self, quantity): - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, filename="", filetype=9, method=1, operand="O" - ) - - exp_error = ( - f"QUANTITY '{quantity.value}' should be appended with a tracer name." - ) - assert exp_error in str(error.value) - - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_tracerquantity_string_without_tracer_name_raises_error( - self, quantity - ): - quantity_str = quantity.value - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity_str, - filename="", - filetype=9, - method=1, - operand="O", - ) - - assert ( - f"QUANTITY '{quantity_str}' should be appended with a tracer name." - in str(error.value) - ) - - def test_with_invalid_quantity_string_raises_value_error( - self, - ): - quantity_str = "invalid" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity_str, - filename="", - filetype=9, - method=1, - operand="O", - ) - - supported_values_str = ", ".join(([x.value for x in ExtOldQuantity])) - assert ( - f"QUANTITY 'invalid' not supported. Supported values: {supported_values_str}" - in str(error.value) - ) - - class TestValidateOperand: - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_string_equal_casing(self, operand): - operand_str = operand.value - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand_str, - ) - assert forcing.operand == operand - - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_string_different_casing(self, operand): - operand_str = operand.value.lower() - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand_str, - ) - assert forcing.operand == operand - - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_enum(self, operand): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand, - ) - assert forcing.operand == operand - - def test_with_invalid_operand_string_raises_value_error( - self, - ): - operand_str = "invalid" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand_str, - ) - - supported_values_str = ", ".join(([x.value for x in Operand])) - assert ( - f"OPERAND 'invalid' not supported. Supported values: {supported_values_str}" - in str(error.value) - ) - - class TestValidateVarName: - def test_validate_varname_with_valid_filetype_11(self): - filetype = 11 - varname = "some_varname" - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - varname=varname, - filetype=filetype, - method=1, - operand="O", - ) - - assert forcing.varname == varname - - def test_validate_varname_with_invalid_filetype(self): - filetype = 9 - varname = "some_varname" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - varname=varname, - filetype=filetype, - method=1, - operand="O", - ) - - exp_msg = "VARNAME only allowed when FILETYPE is 11" - assert exp_msg in str(error.value) - - class TestValidateSourceMask: - @pytest.mark.parametrize("filetype", [4, 6]) - def test_validate_sourcemask_with_valid_filetype_4_or_6(self, filetype): - sourcemask = "sourcemask.file" - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - sourcemask=sourcemask, - filetype=filetype, - method=1, - operand="O", - ) - - assert forcing.sourcemask.filepath.name == sourcemask - - def test_validate_sourcemask_with_invalid_filetype(self): - filetype = 9 - sourcemask = "sourcemask.file" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - sourcemask=sourcemask, - filetype=filetype, - method=1, - operand="O", - ) - - exp_msg = "SOURCEMASK only allowed when FILETYPE is 4 or 6" - assert exp_msg in str(error.value) - - class TestValidateExtrapolationMethod: - def test_validate_extrapolation_method_with_valid_method_3(self): - method = 3 - extrapolation_method = ( - ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox - ) - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - extrapolation_method=extrapolation_method, - operand="O", - ) - - assert forcing.extrapolation_method == extrapolation_method - - def test_validate_extrapolation_method_with_invalid_method(self): - method = 1 - extrapolation_method = ( - ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox - ) - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - extrapolation_method=extrapolation_method, - operand="O", - ) - - exp_msg = "EXTRAPOLATION_METHOD only allowed to be 1 when METHOD is 3" - assert exp_msg in str(error.value) - - class TestValidateMaxSearchRadius: - def test_validate_maxsearchradius_method_with_valid_extrapolation_method_1( - self, - ): - extrapolation_method = 1 - maxsearchradius = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.AirPressureWindXWindY, - filename="", - filetype=3, - method=3, - extrapolation_method=extrapolation_method, - maxsearchradius=maxsearchradius, - operand="O", - ) - - assert forcing.extrapolation_method == extrapolation_method - - def test_validate_maxsearchradius_method_with_invalid_extrapolation_method( - self, - ): - extrapolation_method = 0 - maxsearchradius = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.AirPressureWindXWindY, - filename="", - filetype=3, - method=3, - extrapolation_method=extrapolation_method, - maxsearchradius=maxsearchradius, - operand="O", - ) - - exp_msg = "MAXSEARCHRADIUS only allowed when EXTRAPOLATION_METHOD is 1" - assert exp_msg in str(error.value) - - class TestValidateValue: - def test_validate_value_with_valid_method_4(self): - method = 4 - value = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - value=value, - ) - - assert forcing.value == pytest.approx(value) - - def test_validate_sourcemask_with_invalid_method(self): - method = 1 - value = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - value=value, - ) - - exp_msg = "VALUE only allowed when METHOD is 4" - assert exp_msg in str(error.value) - - class TestValidateFactor: - def test_validate_factor_with_valid_quantity_initialtracer(self): - quantity = ExtOldTracerQuantity.InitialTracer + "Some_Tracer_Name" - factor = 1.23 - - forcing = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - factor=factor, - ) - - assert forcing.factor == pytest.approx(factor) - - def test_validate_factor_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - factor = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - factor=factor, - ) - - exp_msg = "FACTOR only allowed when QUANTITY starts with initialtracer" - assert exp_msg in str(error.value) - - class TestValidateIFrcTyp: - def test_validate_ifrctyp_with_valid_quantity_frictioncoefficient(self): - quantity = ExtOldQuantity.FrictionCoefficient - ifrctyp = 1.23 - - forcing = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - ifrctyp=ifrctyp, - ) - - assert forcing.ifrctyp == pytest.approx(ifrctyp) - - def test_validate_ifrctyp_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - ifrctyp = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - ifrctyp=ifrctyp, - ) - - exp_msg = "IFRCTYP only allowed when QUANTITY is frictioncoefficient" - assert exp_msg in str(error.value) - - class TestValidateAveragingType: - def test_validate_averagingtype_with_valid_method_6(self): - method = 6 - averagingtype = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - averagingtype=averagingtype, - ) - - assert forcing.averagingtype == pytest.approx(averagingtype) - - def test_validate_averagingtype_with_invalid_method(self): - method = 1 - averagingtype = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - averagingtype=averagingtype, - ) - - exp_msg = "AVERAGINGTYPE only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateRelativeSearchCellSize: - def test_validate_relativesearchcellsize_with_valid_method_6(self): - method = 6 - relativesearchcellsize = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - relativesearchcellsize=relativesearchcellsize, - ) - - assert forcing.relativesearchcellsize == pytest.approx( - relativesearchcellsize - ) - - def test_validate_relativesearchcellsize_with_invalid_method(self): - method = 1 - relativesearchcellsize = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - relativesearchcellsize=relativesearchcellsize, - ) - - exp_msg = "RELATIVESEARCHCELLSIZE only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateExtrapolTol: - def test_validate_extrapoltol_with_valid_method_5(self): - method = 5 - extrapoltol = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - extrapoltol=extrapoltol, - ) - - assert forcing.extrapoltol == pytest.approx(extrapoltol) - - def test_validate_extrapoltol_with_invalid_method(self): - method = 1 - extrapoltol = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - extrapoltol=extrapoltol, - ) - - exp_msg = "EXTRAPOLTOL only allowed when METHOD is 5" - assert exp_msg in str(error.value) - - class TestValidatePercentileMinMax: - def test_validate_percentileminmax_with_valid_method_6(self): - method = 6 - percentileminmax = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - percentileminmax=percentileminmax, - ) - - assert forcing.percentileminmax == pytest.approx(percentileminmax) - - def test_validate_percentileminmax_with_invalid_method(self): - method = 1 - percentileminmax = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - percentileminmax=percentileminmax, - ) - - exp_msg = "PERCENTILEMINMAX only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateArea: - def test_validate_area_with_valid_quantity_discharge_salinity_temperature_sorsin( - self, - ): - quantity = ExtOldQuantity.DischargeSalinityTemperatureSorSin - area = 1.23 - - forcing = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - area=area, - ) - - assert forcing.area == pytest.approx(area) - - def test_validate_area_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - area = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - area=area, - ) - - exp_msg = "AREA only allowed when QUANTITY is discharge_salinity_temperature_sorsin" - assert exp_msg in str(error.value) - - class TestValidateNumMin: - def test_validate_nummin_with_valid_method_6(self): - method = 6 - nummin = 123 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - nummin=nummin, - ) - - assert forcing.nummin == nummin - - def test_validate_nummin_with_invalid_method(self): - method = 1 - nummin = 123 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - nummin=nummin, - ) - - exp_msg = "NUMMIN only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - -class TestExtOldModel: - def test_header(self): - assert HEADER == EXP_HEADER - - def test_initialization(self): - model = ExtOldModel() - - assert model.comment == HEADER.splitlines()[1:] - assert len(model.forcing) == 0 - - def test_load_model(self): - file_content = [ - "* This is a comment", - "* This is a comment", - "", - "QUANTITY=internaltidesfrictioncoefficient", - "FILENAME=surroundingDomain.pol", - "FILETYPE=11", - "METHOD=4", - "OPERAND=+", - "VALUE=0.0125", - "", - "* This is a comment", - "", - "QUANTITY=waterlevelbnd", - "FILENAME=OB_001_orgsize.pli", - "FILETYPE=9", - "METHOD=3", - "* This is a comment", - "OPERAND=O", - "* This is a comment", - ] - - with create_temp_file_from_lines( - file_content, "test_load_model_two_blocks.ext" - ) as temp_file: - model = ExtOldModel(filepath=temp_file) - - # Assert correct comments - assert len(model.comment) == 3 - exp_comments = [" This is a comment", " This is a comment", ""] - assert model.comment == exp_comments - - # Assert correct forcings - assert len(model.forcing) == 2 - - forcing_1 = model.forcing[0] - assert forcing_1.quantity == ExtOldQuantity.InternalTidesFrictionCoefficient - assert forcing_1.filename.filepath == Path("surroundingDomain.pol") - assert forcing_1.varname == None - assert forcing_1.sourcemask.filepath == None - assert forcing_1.filetype == ExtOldFileType.NetCDFGridData - assert forcing_1.method == ExtOldMethod.InterpolateSpace - assert forcing_1.operand == Operand.add - assert forcing_1.value == pytest.approx(0.0125) - assert forcing_1.factor == None - assert forcing_1.ifrctyp == None - assert forcing_1.averagingtype == None - assert forcing_1.relativesearchcellsize == None - assert forcing_1.extrapoltol == None - assert forcing_1.percentileminmax == None - assert forcing_1.area == None - assert forcing_1.nummin == None - - forcing_2 = model.forcing[1] - assert forcing_2.quantity == ExtOldQuantity.WaterLevelBnd - assert forcing_2.filename.filepath == Path("OB_001_orgsize.pli") - assert forcing_2.varname == None - assert forcing_2.sourcemask.filepath == None - assert forcing_2.filetype == ExtOldFileType.Polyline - assert forcing_2.method == ExtOldMethod.InterpolateTimeAndSpaceSaveWeights - assert forcing_2.operand == Operand.override - assert forcing_2.value == None - assert forcing_2.factor == None - assert forcing_2.ifrctyp == None - assert forcing_2.averagingtype == None - assert forcing_2.relativesearchcellsize == None - assert forcing_2.extrapoltol == None - assert forcing_2.percentileminmax == None - assert forcing_2.area == None - assert forcing_2.nummin == None - - def test_save_model(self): - - exp_file_content = [ - "*This is a comment", - "*This is a comment", - "*", - "QUANTITY=internaltidesfrictioncoefficient", - "FILENAME=surroundingDomain.pol", - "FILETYPE=11", - "METHOD=4", - "OPERAND=+", - "VALUE=0.012500", - "", - "QUANTITY=waterlevelbnd", - "FILENAME=OB_001_orgsize.pli", - "FILETYPE=9", - "METHOD=3", - "OPERAND=O", - ] - - comments = ["This is a comment", "This is a comment", ""] - - forcing_1 = ExtOldForcing( - quantity=ExtOldQuantity.InternalTidesFrictionCoefficient, - filename=Path("surroundingDomain.pol"), - filetype=ExtOldFileType.NetCDFGridData, - method=ExtOldMethod.InterpolateSpace, - operand=Operand.add, - value=0.0125, - ) - - forcing_2 = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename=Path("OB_001_orgsize.pli"), - filetype=ExtOldFileType.Polyline, - method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, - operand=Operand.override, - ) - - model = ExtOldModel(comment=comments, forcing=[forcing_1, forcing_2]) - - model.serializer_config.float_format = "f" - - with get_temp_file("test_save_model.ext") as file: - model.save(filepath=file) - - with create_temp_file_from_lines( - exp_file_content, "test_save_model_expected.ext" - ) as exp_file: - assert_files_equal(file, exp_file) - - -class TestParser: - def test_parse_two_blocks_parses_to_the_correct_dictionaries(self): - file_content = [ - "* This is a comment", - "* This is a comment", - "", - "QUANTITY=internaltidesfrictioncoefficient", - "FILENAME=surroundingDomain.pol", - "FILETYPE=11", - "METHOD=4", - "OPERAND=+", - "VALUE=0.0125", - "", - "* This is a comment", - "", - "QUANTITY=waterlevelbnd", - "FILENAME=OB_001_orgsize.pli", - "FILETYPE=9", - "METHOD=3", - "* This is a comment", - "OPERAND=O", - "* This is a comment", - ] - - parser = Parser() - - with create_temp_file_from_lines(file_content, "two_blocks.ext") as temp_file: - data = parser.parse(filepath=temp_file) - - exp_data = { - "comment": [" This is a comment", " This is a comment", ""], - "forcing": [ - { - "QUANTITY": "internaltidesfrictioncoefficient", - "FILENAME": "surroundingDomain.pol", - "FILETYPE": "11", - "METHOD": "4", - "OPERAND": "+", - "VALUE": "0.0125", - }, - { - "QUANTITY": "waterlevelbnd", - "FILENAME": "OB_001_orgsize.pli", - "FILETYPE": "9", - "METHOD": "3", - "OPERAND": "O", - }, - ], - } - - assert data == exp_data - - def test_parse_block_with_incorrect_order_raises_error(self): - file_lines = [ - "FILENAME=surroundingDomain.pol", - "QUANTITY=internaltidesfrictioncoefficient", - "FILETYPE=11", - "OPERAND=+", - "VALUE=0.0125", - "QUANTITY=internaltidesfrictioncoefficient", - ] - - parser = Parser() - - with create_temp_file_from_lines( - file_lines, "incorrect_order.ext" - ) as temp_file: - with pytest.raises(ValueError) as error: - parser.parse(filepath=temp_file) - - exp_error = "Line 1: Properties should be in the following order: QUANTITY, FILENAME, FILETYPE, OPERAND, VALUE" - assert str(error.value) == exp_error - - -class TestSerializer: - def test_serialize(self): - exp_file_content = [ - "*This is a comment", - "*This is a comment", - "*", - "QUANTITY=internaltidesfrictioncoefficient", - "FILENAME=surroundingDomain.pol", - "FILETYPE=11", - "METHOD=4", - "OPERAND=+", - "VALUE=0.012500", - "", - "QUANTITY=waterlevelbnd", - "FILENAME=OB_001_orgsize.pli", - "FILETYPE=9", - "METHOD=3", - "OPERAND=O", - ] - - comments = ["This is a comment", "This is a comment", ""] - - forcing_1 = { - "quantity": "internaltidesfrictioncoefficient", - "filename": DiskOnlyFileModel(Path("surroundingDomain.pol")), - "filetype": 11, - "method": 4, - "operand": "+", - "value": 0.0125, - } - - forcing_2 = { - "quantity": "waterlevelbnd", - "filename": DiskOnlyFileModel(Path("OB_001_orgsize.pli")), - "filetype": 9, - "method": 3, - "operand": "O", - } - - forcing_data = {"comment": comments, "forcing": [forcing_1, forcing_2]} - - serializer_config = SerializerConfig(float_format="f") - save_settings = ModelSaveSettings() - - with get_temp_file("test_serialize.ext") as file: - Serializer.serialize(file, forcing_data, serializer_config, save_settings) - - with create_temp_file_from_lines( - exp_file_content, "test_serialize_expected.ext" - ) as exp_file: - assert_files_equal(file, exp_file) - - -class TestOldInitialConditionQuantity: - - def test_ext_old_initial_condition_quantity(self, initial_condition_quantities): - """ - Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. - """ - assert len(ExtOldInitialConditionQuantity) == len(initial_condition_quantities) - assert all( - quantity.value in initial_condition_quantities - for quantity in ExtOldInitialConditionQuantity.__members__.values() - ) - - def test_the_missing_method(self): - """ - Test the missing method in the ExtOldInitialConditionQuantity enum with a ValueError. - """ - with pytest.raises(ValueError): - ExtOldInitialConditionQuantity("missing_method") - - @pytest.mark.parametrize("qunatity_name", quantities_with_prefixes) - def test_the_missing_method_with_tracers(self, qunatity_name): - """ - Test the missing method in the ExtOldInitialConditionQuantity enum with a quantity that starts the quantities in the . - """ - quantity = ExtOldInitialConditionQuantity(qunatity_name) - assert quantity.value == qunatity_name - - -def test_ext_old_parameter_quantity(parameter_quantities: List[str]): - """ - Test the number of parameter quantities in the ExtOldParametersQuantity enum. - """ - assert len(ExtOldParametersQuantity) == len(parameter_quantities) - assert all( - quantity.value in parameter_quantities - for quantity in ExtOldParametersQuantity.__members__.values() - ) diff --git a/tests/dflowfm/test_mdu.py b/tests/dflowfm/test_mdu.py index b8d8d2784..e5f830900 100644 --- a/tests/dflowfm/test_mdu.py +++ b/tests/dflowfm/test_mdu.py @@ -25,8 +25,7 @@ PolyObject, ) from hydrolib.core.dflowfm.xyn.models import XYNModel, XYNPoint - -from ..utils import ( +from tests.utils import ( assert_files_equal, assert_objects_equal, test_input_dir, @@ -396,12 +395,12 @@ def test_mdu_unknown_keyword_loading_throws_valueerror_for_unknown_keyword( ): tmp_mdu = """ [General] - fileVersion = 1.09 - fileType = modelDef - program = D-Flow FM - version = 1.2.100.66357 - autoStart = 0 - pathsRelativeToParent = 0 + fileVersion = 1.09 + fileType = modelDef + program = D-Flow FM + version = 1.2.100.66357 + autoStart = 0 + pathsRelativeToParent = 0 unknownkey = something """ @@ -425,12 +424,12 @@ def test_mdu_unknown_keywords_loading_throws_valueerror_for_unknown_keywords( ): tmp_mdu = """ [General] - fileVersion = 1.09 - fileType = modelDef - program = D-Flow FM - version = 1.2.100.66357 - autoStart = 0 - pathsRelativeToParent = 0 + fileVersion = 1.09 + fileType = modelDef + program = D-Flow FM + version = 1.2.100.66357 + autoStart = 0 + pathsRelativeToParent = 0 unknownkey = something unknownkey2 = something2 """ @@ -454,12 +453,12 @@ def test_mdu_unknown_keywords_loading_thrown_valueerror_for_unknown_keyword_does ): tmp_mdu = """ [General] - fileVersion = 1.09 - fileType = modelDef - program = D-Flow FM - version = 1.2.100.66357 - autoStart = 0 - pathsRelativeToParent = 0 + fileVersion = 1.09 + fileType = modelDef + program = D-Flow FM + version = 1.2.100.66357 + autoStart = 0 + pathsRelativeToParent = 0 unknownkey = something """ diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py new file mode 100644 index 000000000..df313333c --- /dev/null +++ b/tests/tools/test_converters_source_sink.py @@ -0,0 +1,340 @@ +from pathlib import Path +from unittest.mock import patch + +import pytest + +from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity +from hydrolib.tools.ext_old_to_new.converters import SourceSinkConverter + + +class TestParseTimFileForSourceSink: + time_file_full = Path("tests/data/input/source-sink/leftsor.tim") + + @pytest.mark.parametrize( + "tim_file, ext_file_quantity_list, expected_data", + [ + # The tim file has 4 columns (plus the time column), and the list of ext quantities has 4 quantities. + pytest.param( + time_file_full, + ["discharge", "temperature", "salinity", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="test_default_all_quantities_comes_from_ext", + ), + # The tim file has 4 columns (plus the time column), but the list of ext quantities has only 3 quantities. + pytest.param( + time_file_full, + ["discharge", "temperature", "salinity"], + None, + id="test_list_of_ext_quantities_tim_column_mismatch", + ), + # The tim file has 3 columns (plus the time column), but the list of ext quantities has only 3 quantities. + pytest.param( + Path("tests/data/input/source-sink/no_temperature_or_salinity.tim"), + ["discharge", "salinity", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "salinitydelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="no_temperature", + ), + # The tim file has 3 columns (plus the time column), and the list of ext quantities has only 3 quantities. + pytest.param( + Path("tests/data/input/source-sink/no_temperature_or_salinity.tim"), + ["discharge", "temperature", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="no_salinity", + ), + # The tim file has 2 columns (plus the time column), and the list of ext quantities has only 2 quantities. + pytest.param( + Path("tests/data/input/source-sink/no_temperature_no_salinity.tim"), + ["discharge", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="no_temperature_no_salinity", + ), + ], + ) + def test_parse_tim_model(self, tim_file, ext_file_quantity_list, expected_data): + converter = SourceSinkConverter() + + if expected_data is None: + with pytest.raises(ValueError): + converter.parse_tim_model(tim_file, ext_file_quantity_list) + else: + time_series_data = converter.parse_tim_model( + tim_file, ext_file_quantity_list + ) + assert time_series_data == expected_data + + @pytest.mark.parametrize( + "tim_file, ext_file_quantity_list, mdu_quantities, expected_data", + [ + pytest.param( + time_file_full, + ["discharge", "initialtracer_anyname"], + {"salinity": True, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="all_quantities_from_mdu", + ), + pytest.param( + time_file_full, + ["discharge", "temperature", "initialtracer_anyname"], + {"salinity": True, "temperature": False}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_from_ext_salinity_from_mdu", + ), + pytest.param( + time_file_full, + ["discharge", "salinity", "initialtracer_anyname"], + {"salinity": False, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_from_mdu_salinity_from_ext", + ), + pytest.param( + time_file_full, + ["discharge", "salinity", "initialtracer_anyname"], + {"salinity": True, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_salinity_from_mdu", + ), + pytest.param( + time_file_full, + ["discharge", "salinity", "temperature", "initialtracer_anyname"], + {"salinity": False, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_from_mdu_temp_salinity_from_ext", + ), + ], + ) + def test_parse_tim_model_with_mdu( + self, tim_file, ext_file_quantity_list, mdu_quantities, expected_data + ): + converter = SourceSinkConverter() + + time_series_data = converter.parse_tim_model( + tim_file, ext_file_quantity_list, **mdu_quantities + ) + assert time_series_data == expected_data + + +class TestSourceSinkConverter: + + def test_default(self): + """ + The test case is based on the following assumptions: + - temperature, salinity, and initialtracer_anyname are other quantities in the ext file. + - The ext file has the following structure: + ``` + QUANTITY=initialtemperature + FILENAME=right.pol + FILETYPE=10 + METHOD=4 + OPERAND=O + VALUE=11. + + QUANTITY=initialsalinity + FILENAME=right.pol + FILETYPE=10 + METHOD=4 + OPERAND=O + VALUE=11. + + QUANTITY=initialtracer_anyname + FILENAME=leftsor.pliz + FILETYPE=9 + METHOD=1 + OPERAND=O + + QUANTITY=discharge_salinity_temperature_sorsin + FILENAME=leftsor.pliz + FILETYPE=9 + METHOD=1 + OPERAND=O + AREA=1.0 + ``` + + - The time file has the following structure: + ``` + 0.0 1.0 2.0 3.0 4.0 + 100 1.0 2.0 3.0 4.0 + 200 1.0 2.0 3.0 4.0 + 300 1.0 2.0 3.0 4.0 + 400 1.0 2.0 3.0 4.0 + ``` + + - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. + ``` + zsink = -4.2 + zsource = -3 + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.350456 12.950216 -4.200000 + 45.200344 6.350155 -3.000 + ``` + + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor.pliz", + filetype=9, + method="1", + operand="O", + area=1.0, + ) + + ext_file_other_quantities = [ + "salinity", + "temperature", + "initialtracer_anyname", + ] + converter = SourceSinkConverter() + converter.root_dir = "tests/data/input/source-sink" + new_quantity_block = converter.convert(forcing, ext_file_other_quantities) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.temperaturedelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.salinitydelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == [-4.2] + assert new_quantity_block.zsource == [-3] + + def test_4_5_columns_polyline(self): + """ + The test case is based on the assumptions of the default test plus the following changes: + + - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the + third and forth columns' values, and if there is a fifth column it will be ignored. + ``` + zsink = [-4.2, -5.35] + zsource = [-3, -2.90] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 + ... + + ... + 45.20 6.35 -3.00 -2.90 + ``` + when there is a fifth column: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 0 + ... + + ... + 45.20 6.35 -3.00 -2.90 0 + ``` + + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor-5-columns.pliz", + filetype=9, + method="1", + operand="O", + area=1.0, + ) + + ext_file_other_quantities = [ + "salinity", + "temperature", + "initialtracer_anyname", + ] + converter = SourceSinkConverter() + converter.root_dir = "tests/data/input/source-sink" + tim_file = Path("leftsor.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + new_quantity_block = converter.convert(forcing, ext_file_other_quantities) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.temperaturedelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.salinitydelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == [-4.2, -5.35] + assert new_quantity_block.zsource == [-3, -2.90] + + def test_no_temperature_no_salinity(self): + """ + The test case is based on the assumptions of the default test plus the following changes: + + - The timfile has only two columns (plus the time column), and the list of ext quantities has only two quantities. + ``` + + + - The tim file file has the following structure: + ``` + 0.0 1.0 4.0 + 100 1.0 4.0 + 200 1.0 4.0 + 300 1.0 4.0 + 400 1.0 4.0 + ``` + + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor.pliz", + filetype=9, + method="1", + operand="O", + area=1.0, + ) + + ext_file_other_quantities = [ + "initialtracer_anyname", + ] + + converter = SourceSinkConverter() + converter.root_dir = "tests/data/input/source-sink" + + tim_file = Path("no_temperature_no_salinity.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + new_quantity_block = converter.convert(forcing, ext_file_other_quantities) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == [-4.2] + assert new_quantity_block.zsource == [-3] diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index b5cf0211e..a0061a267 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,50 +1,47 @@ from pathlib import Path from typing import Dict, List -from unittest.mock import MagicMock +from unittest.mock import MagicMock, Mock, patch import pytest +from pydantic.v1.error_wrappers import ValidationError from hydrolib.core.dflowfm.ext.models import ExtModel from hydrolib.core.dflowfm.extold.models import ExtOldModel from hydrolib.core.dflowfm.inifield.models import IniFieldModel +from hydrolib.core.dflowfm.mdu.legacy import LegacyFMModel from hydrolib.core.dflowfm.structure.models import StructureModel from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( ExternalForcingConverter, ext_old_to_new_dir_recursive, - ext_old_to_new_from_mdu, ) -class TestExtOldToNew: +class TestExtOldToNewFromMDU: def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): - main_converter._verbose = True - mdu_filename = input_files_dir.joinpath( - "e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu" - ) - ext_old_to_new_from_mdu(mdu_filename) - captured = capsys.readouterr() - assert captured.out.startswith( - f"Could not read {mdu_filename} as a valid FM model:" + mdu_filename = ( + input_files_dir / "e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu" ) + converter = ExternalForcingConverter.from_mdu(mdu_filename) + converter.verbose = True + _, _, _ = converter.update() + fm_model = converter.fm_model + assert isinstance(fm_model, LegacyFMModel) + assert len(converter.extold_model.forcing) == 5 + assert isinstance(fm_model.external_forcing.extforcefilenew, ExtModel) def test_extrapolate_slr(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = input_files_dir.joinpath( - "e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu" - ) - ext_old_to_new_from_mdu(mdu_filename) - captured = capsys.readouterr() - assert captured.out.startswith( - f"Could not read {mdu_filename} as a valid FM model:" + mdu_filename = ( + input_files_dir + / "e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu" ) - def test_basinsquares(self, capsys, input_files_dir: Path): - main_converter._verbose = True - mdu_filename = input_files_dir.joinpath( - "e02/f006_external_forcing/c020_basinnofriction_squares/basinsquares.mdu" - ) - ext_old_to_new_from_mdu(mdu_filename) + # test with error + with pytest.raises(ValidationError): + ExternalForcingConverter.from_mdu(mdu_filename) + + ExternalForcingConverter.from_mdu(mdu_filename, suppress_errors=True) captured = capsys.readouterr() assert captured.out.startswith( f"Could not read {mdu_filename} as a valid FM model:" @@ -52,8 +49,8 @@ def test_basinsquares(self, capsys, input_files_dir: Path): def test_recursive(self, capsys, input_files_dir: Path): main_converter._verbose = True - path = input_files_dir.joinpath("e02/f006_external_forcing") - ext_old_to_new_dir_recursive(path) + path = input_files_dir / "e02/f006_external_forcing" + ext_old_to_new_dir_recursive(path, suppress_errors=True) class TestExternalFocingConverter: @@ -150,14 +147,6 @@ def test_read_old_file( assert len(converter.extold_model.comment) == old_forcing_comment_len quantities = [forcing.quantity for forcing in converter.extold_model.forcing] assert all([quantity in old_forcing_file_quantities for quantity in quantities]) - # test verbose - main_converter._verbose = True - ExternalForcingConverter._read_old_file(old_forcing_file) - captured = capsys.readouterr() - - assert captured.out.startswith( - f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." - ) class TestUpdate: @@ -229,3 +218,72 @@ def test_boundary_only(self, old_forcing_file_boundary: Dict[str, str]): assert [ str(quantities[i].locationfile.filepath) for i in range(num_quantities) ] == old_forcing_file_boundary["locationfile"] + + +class TestUpdateSourcesSinks: + + def test_sources_sinks_only(self, old_forcing_file_boundary: Dict[str, str]): + """ + The old external forcing file contains only 3 quantities `discharge_salinity_temperature_sorsin`, + `initialsalinity`, and `initialtemperature`. + + - polyline 2*3 file `leftsor.pliz` is used to read the source and sink points. + - tim file `tim-3-columns.tim` with 3 columns (plus the time column) the name should be the same as the + polyline but the `tim-3-columns.tim` is mocked in the test. + + """ + path = "tests/data/input/source-sink/source-sink.ext" + converter = ExternalForcingConverter(path) + + tim_file = Path("tim-3-columns.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + ext_model, inifield_model, structure_model = converter.update() + + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = 1 + assert len(ext_model.source_sink) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(ext_model.meteo) == 0 + assert len(structure_model.structure) == 0 + assert len(inifield_model.initial) == 2 + quantities = ext_model.source_sink + quantities[0].name = "discharge_salinity_temperature_sorsin" + + def test_sources_sinks_with_fm(self, old_forcing_file_boundary: Dict[str, str]): + """ + The old external forcing file contains only 3 quantities `discharge_salinity_temperature_sorsin`, + `initialsalinity`, and `initialtemperature`. + + - polyline 2*3 file `leftsor.pliz` is used to read the source and sink points. + - tim file `tim-3-columns.tim` with 3 columns (plus the time column) the name should be the same as the + polyline but the `tim-3-columns.tim` is mocked in the test. + + """ + path = "tests/data/input/source-sink/source-sink.ext" + converter = ExternalForcingConverter(path) + + # Mock the fm_model + mock_fm_model = Mock() + mock_fm_model.physics.salinity = True + mock_fm_model.physics.temperature = True + converter._fm_model = mock_fm_model + + tim_file = Path("tim-3-columns.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + ext_model, inifield_model, structure_model = converter.update() + + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = 1 + assert len(ext_model.source_sink) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(ext_model.meteo) == 0 + assert len(structure_model.structure) == 0 + assert len(inifield_model.initial) == 2 + quantities = ext_model.source_sink + quantities[0].name = "discharge_salinity_temperature_sorsin" diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py index 625ab55bb..d6ed156da 100644 --- a/tests/tools/test_tools_utils.py +++ b/tests/tools/test_tools_utils.py @@ -3,9 +3,14 @@ import pytest from hydrolib.core.dflowfm.ext.models import ExtModel +from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.core.dflowfm.inifield.models import IniFieldModel from hydrolib.core.dflowfm.structure.models import StructureModel -from hydrolib.tools.ext_old_to_new.utils import construct_filemodel_new_or_existing +from hydrolib.tools.ext_old_to_new.utils import ( + construct_filemodel_new_or_existing, + convert_interpolation_data, + find_temperature_salinity_in_quantities, +) @pytest.mark.parametrize("model", [ExtModel, IniFieldModel, StructureModel]) @@ -14,3 +19,36 @@ def test_construct_filemodel_new(model): ext_model = construct_filemodel_new_or_existing(model, file) assert isinstance(ext_model, model) assert ext_model.filepath == file + + +def test_convert_interpolation_data(): + data = {} + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WindX, + filename="windtest.amu", + filetype=4, + method="6", + operand="O", + ) + data = convert_interpolation_data(forcing, data) + assert data["interpolationmethod"] == "averaging" + assert data["averagingnummin"] is None + assert data["averagingtype"] == "mean" + assert data["averagingrelsize"] is None + assert data["averagingpercentile"] is None + + +@pytest.mark.parametrize( + "strings, expected", + [ + (["temperature", "Salinity"], {"temperaturedelta": 4, "salinitydelta": 3}), + (["Temperature"], {"temperaturedelta": 3}), + (["Salinity"], {"salinitydelta": 3}), + (["tracers"], {}), + (["TEMPERATURE", "salInity"], {"temperaturedelta": 4, "salinitydelta": 3}), + ([], {}), + (["No relevant data here.", "Nothing to match."], {}), + ], +) +def test_find_keywords_with_values(strings, expected): + assert find_temperature_salinity_in_quantities(strings) == expected