From 3f33e92173369d752218caf8f0db3691333835f1 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 15 Nov 2024 13:23:09 +0100 Subject: [PATCH 001/193] test initializing the `ExtOldModel` --- tests/data/input/old-external-forcing.ext | 147 ++++++++++++++++++++++ tests/dflowfm/test_extold.py | 28 ++++- 2 files changed, 174 insertions(+), 1 deletion(-) create mode 100644 tests/data/input/old-external-forcing.ext diff --git a/tests/data/input/old-external-forcing.ext b/tests/data/input/old-external-forcing.ext new file mode 100644 index 000000000..c0fc8ffee --- /dev/null +++ b/tests/data/input/old-external-forcing.ext @@ -0,0 +1,147 @@ +* QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 +* : outflowbnd, neumannbnd, qhbnd filetype=9 method=2,3 +* : salinitybnd filetype=9 method=2,3 +* : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 +* : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype, ibotlevtype filetype=4,7,10 method=4 +* : initialwaterlevel filetype=4,7,10,12 method=4,5 +* : initialtemperature filetype=4,7,10,12 method=4,5 +* : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or +* : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 +* : initialverticaltemperatureprofile filetype=9,10 method= +* : initialverticalsalinityprofile filetype=9,10 method= +* : windx, windy, windxy, rainfall_mmperday, atmosphericpressure filetype=1,2,4,7,8 method=1,2,3 +* : shiptxy, movingstationtxy filetype=1 method=1 +* : discharge_salinity_temperature_sorsin filetype=9 method=1 +* +* kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 +* FILETYPE=1 : uniform kx = 1 value 1 dim array uni +* FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 +* FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation +* FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct +* FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw +* FILETYPE=6 : curvi kx = ? bilin/findnm +* FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation +* FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations +* +* FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as +* timeseries or Fourier components or tidal constituents +* Timeseries are in files *_000i.tim, two columns: time (min) values +* Fourier components and or tidal constituents are in files *_000i.cmp, three columns +* period (min) or constituent name (e.g. M2), amplitude and phase (deg) +* If no file is specified for a node, its value will be interpolated from surrounding nodes +* If only one signal file is specified, the boundary gets a uniform signal +* For a dischargebnd, only one signal file must be specified +* +* FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields +* FILETYPE=11 : ncgrid currently not in use +* FILETYPE=12 : ncflow kx = 1 field 1 dim array triangulation +* +* METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation +* =1 : intp space and time (getval) keep 2 meteofields in memory +* =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory +* =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. +* =4 : only spatial, inside polygon +* =5 : only spatial, triangulation +* =6 : only spatial, averaging +* =7 : only spatial, index triangulation +* =8 : only spatial, smoothing +* =9 : only spatial, internal diffusion +* =10 : only initial vertical profiles +* +* OPERAND =O : Override at all points +* =+ : Add to previously specified value +* =* : Multiply with previously specified value +* =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) +* =X : MAX with prev. spec. +* =N : MIN with prev. spec. +* +* VALUE = : Offset value for this provider +* +* FACTOR = : Conversion factor for this provider +* +************************************************************************************************************** + +QUANTITY=windx +FILENAME=windtest.amu +FILETYPE=4 +METHOD=2 +OPERAND=O + +QUANTITY=windy +FILENAME=windtest.amv +FILETYPE=4 +METHOD=2 +OPERAND=O + +* First 1D2D: +QUANTITY =initialwaterlevel +FILENAME =iniwaterlevel1.pol +FILETYPE =10 +METHOD =4 +OPERAND =O +VALUE =1.0 + +QUANTITY =initialwaterlevel +FILENAME =iniwaterlevel.xyz +FILETYPE =7 +METHOD =5 +OPERAND =O + +QUANTITY =initialsalinity +FILENAME =inisalinity.xyz +FILETYPE =7 +METHOD =5 +OPERAND =O + +QUANTITY=bedlevel +FILENAME=bathy.xyz +FILETYPE=7 +METHOD=6 +OPERAND=O +NUMMIN=4 + +QUANTITY=bedlevel +FILENAME=bathy.xyz +FILETYPE=7 +METHOD=6 +OPERAND=O + + +QUANTITY =waterlevelbnd +FILENAME =right.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + +QUANTITY =horizontaleddyviscositycoefficient +FILENAME =eddvishor.xyz +FILETYPE =7 +METHOD =5 +OPERAND =O + +QUANTITY =horizontaleddyviscositycoefficient +FILENAME =eddvishor.xyz +FILETYPE =7 +METHOD =5 +OPERAND =O + +QUANTITY =horizontaleddyviscositycoefficient +FILENAME =eddvishor1.pol +FILETYPE =10 +METHOD =4 +OPERAND =O +VALUE =7.0 + +QUANTITY =horizontaleddyviscositycoefficient +FILENAME =eddvishor2.pol +FILETYPE =10 +METHOD =4 +OPERAND =O +VALUE =6.0 + + +QUANTITY =salinitybnd +FILENAME =rightsal.pli +FILETYPE =9 +METHOD =3 +OPERAND =O diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index 473ca7de4..aab4dd747 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -23,7 +23,7 @@ from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel -from ..utils import ( +from tests.utils import ( assert_files_equal, create_temp_file_from_lines, get_temp_file, @@ -126,6 +126,32 @@ class TestExtForcing: + def test_initialize_with_old_external_forcing_file(self): + path = "tests/data/input/old-external-forcing.ext" + exising_quantity = ['windx', + 'windy', + 'initialwaterlevel', + 'initialwaterlevel', + 'initialsalinity', + 'bedlevel', + 'bedlevel', + 'waterlevelbnd', + 'horizontaleddyviscositycoefficient', + 'horizontaleddyviscositycoefficient', + 'horizontaleddyviscositycoefficient', + 'horizontaleddyviscositycoefficient', + 'salinitybnd'] + + model = ExtOldModel(path) + assert isinstance(model, ExtOldModel) + assert len(model.comment) == 63 + assert len(model.forcing) == 13 + forcing_1 = model.forcing[0] + assert isinstance(forcing_1, ExtOldForcing) + quantities = [forcing.quantity for forcing in model.forcing] + assert all([quantity in exising_quantity for quantity in quantities]) + + def test_initialize_with_timfile_initializes_timmodel(self): forcing = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, From 2ad0ca8f03ef633118a8f72990c9946005ad6315 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 20:21:01 +0100 Subject: [PATCH 002/193] remove unused imported modules --- hydrolib/tools/ext_old_to_new/main_converter.py | 17 +++-------------- 1 file changed, 3 insertions(+), 14 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index be04e9636..b035af123 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -1,35 +1,23 @@ import argparse -import math import os -import re import sys -from pathlib import Path -from typing import Dict, List, Literal, Optional, Tuple - -from pydantic import Extra, FilePath +from typing import Tuple from hydrolib.core import __version__ from hydrolib.core.basemodel import PathOrStr -from hydrolib.core.dflowfm import FMModel from hydrolib.core.dflowfm.ext.models import ( Boundary, ExtModel, Lateral, Meteo, - MeteoForcingFileType, - MeteoInterpolationMethod, ) from hydrolib.core.dflowfm.extold.models import * from hydrolib.core.dflowfm.inifield.models import ( - AveragingType, - DataFileType, IniFieldModel, InitialField, - InterpolationMethod, ParameterField, ) from hydrolib.core.dflowfm.mdu.legacy import LegacyFMModel -from hydrolib.core.dflowfm.mdu.models import General from hydrolib.core.dflowfm.structure.models import Structure, StructureModel from .converter_factory import ConverterFactory @@ -47,7 +35,8 @@ def _read_ext_old_data(extoldfile: PathOrStr) -> ExtOldModel: extoldfile (PathOrStr): path to the external forcings file (.ext) Returns: - ExtOldModel: object with all forcing blocks.""" + ExtOldModel: object with all forcing blocks. + """ global _verbose extold_model = ExtOldModel(extoldfile) From 3227ab68b00dd80077e29a81ced5f37cb1c224d3 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 21:10:38 +0100 Subject: [PATCH 003/193] remove unused imported modules --- .flake8 | 1 - hydrolib/core/dflowfm/extold/models.py | 30 +- poetry.lock | 699 +++++++++++++------------ pyproject.toml | 9 + tests/conftest.py | 11 + tests/dflowfm/test_extold.py | 9 + 6 files changed, 407 insertions(+), 352 deletions(-) delete mode 100644 .flake8 create mode 100644 tests/conftest.py diff --git a/.flake8 b/.flake8 deleted file mode 100644 index 919baa24b..000000000 --- a/.flake8 +++ /dev/null @@ -1 +0,0 @@ -max_line_length = 88 \ No newline at end of file diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index b8ae8062a..bfad64aa3 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -223,6 +223,28 @@ class ExtOldMeteoQuantity(StrEnum): """Dewpoint temperature""" +class ExtOldInitialConditionQuantity(StrEnum): + """ + Initial Condition quantities: + initialwaterlevel, initialsalinity, initialsalinitytop, initialtemperature, + initialverticaltemperatureprofile, initialverticalsalinityprofile, initialvelocityx, + initialvelocityy, initialvelocity, initialsalinitytopuse + """ + + # Initial Condition fields + InitialWaterLevel = "initialwaterlevel" + InitialSalinity = "initialsalinity" + InitialSalinityTop = "initialsalinitytop" + InitialTemperature = "initialtemperature" + InitialVerticalTemperatureProfile = "initialverticaltemperatureprofile" + InitialVerticalSalinityProfile = "initialverticalsalinityprofile" + + InitialVelocityX = "initialvelocityx" + InitialVelocityY = "initialvelocityy" + InitialVelocity = "initialvelocity" + InitialSalinityTopUse = "initialsalinitytopuse" + + class ExtOldQuantity(StrEnum): """Enum class containing the valid values for the boundary conditions category of the external forcings. @@ -459,7 +481,7 @@ class ExtOldForcing(BaseModel): filetype: ExtOldFileType = Field(alias="FILETYPE") """FileType: Indication of the file type. - + Options: 1. Time series 2. Time series magnitude and direction @@ -476,7 +498,7 @@ class ExtOldForcing(BaseModel): method: ExtOldMethod = Field(alias="METHOD") """ExtOldMethod: The method of interpolation. - + Options: 1. Pass through (no interpolation) 2. Interpolate time and space @@ -502,8 +524,8 @@ class ExtOldForcing(BaseModel): operand: Operand = Field(alias="OPERAND") """Operand: The operand to use for adding the provided values. - - Options: + + Options: 'O' Existing values are overwritten with the provided values. 'A' Provided values are used where existing values are missing. '+' Existing values are summed with the provided values. diff --git a/poetry.lock b/poetry.lock index 08b6ca131..79b97f60d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.3.2 and should not be changed by hand. [[package]] name = "annotated-types" @@ -269,21 +269,20 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "bleach" -version = "6.1.0" +version = "6.2.0" description = "An easy safelist-based HTML-sanitizing tool." optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "bleach-6.1.0-py3-none-any.whl", hash = "sha256:3225f354cfc436b9789c66c4ee030194bee0568fbf9cbdad3bc8b5c26c5f12b6"}, - {file = "bleach-6.1.0.tar.gz", hash = "sha256:0a31f1837963c41d46bbf1331b8778e1308ea0791db03cc4e7357b97cf42a8fe"}, + {file = "bleach-6.2.0-py3-none-any.whl", hash = "sha256:117d9c6097a7c3d22fd578fcd8d35ff1e125df6736f554da4e432fdd63f31e5e"}, + {file = "bleach-6.2.0.tar.gz", hash = "sha256:123e894118b8a599fd80d3ec1a6d4cc7ce4e5882b1317a7e1ba69b56e95f991f"}, ] [package.dependencies] -six = ">=1.9.0" webencodings = "*" [package.extras] -css = ["tinycss2 (>=1.1.0,<1.3)"] +css = ["tinycss2 (>=1.1.0,<1.5)"] [[package]] name = "certifi" @@ -592,73 +591,73 @@ test-no-images = 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hash = "sha256:bc9eb26f4506fda01b81bcde0ca78103b6e62f991b381fec825435c836edbc29"}, + {file = "zipp-3.21.0-py3-none-any.whl", hash = "sha256:ac1bbe05fd2991f160ebce24ffbac5f6d11d83dc90891255885223d42b3cd931"}, + {file = "zipp-3.21.0.tar.gz", hash = "sha256:2c9958f6430a2040341a52eb608ed6dd93ef4392e02ffe219417c1b28b5dd1f4"}, ] [package.extras] @@ -4184,4 +4189,4 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "e4bba9f409b83c37b95378b4b37ad6a15c219be90f8626cc0076d0a4f471b4f8" +content-hash = "3463d405e271deae75f14d365eee1f967a8262d30d97dba0cf2af5f493a75ac2" diff --git a/pyproject.toml b/pyproject.toml index 829e4c1e8..f05b3381b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -52,6 +52,7 @@ ipykernel = "^6.15.0" matplotlib = "^3.8" # xarray >=2024.6.0 supports numpy 2.0, but consider looser version if adding it as actual package dependencies xarray = ">=2024.6.0" +flake8-pyproject = "*" [tool.commitizen] name = "cz_conventional_commits" @@ -87,6 +88,14 @@ exclude = ''' ) ''' +[tool.flake8] +ignore = ["E501", "W503"] +per-file-ignores = [ + '__init__.py:F401', +] +max-line-length = 120 +count = true + [tool.isort] profile = "black" multi_line_output = 3 diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 000000000..1bafe25fa --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,11 @@ +import pytest +from typing import List + + +@pytest.fixture +def initial_condition_quantities() -> List[str]: + return [ + "initialwaterlevel", "initialsalinity", "initialsalinitytop", "initialtemperature", + "initialverticaltemperatureprofile", "initialverticalsalinityprofile", "initialvelocityx", + "initialvelocityy", "initialvelocity", "initialsalinitytopuse" + ] diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index aab4dd747..2e1dd3bc0 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -17,6 +17,7 @@ ExtOldModel, ExtOldQuantity, ExtOldTracerQuantity, + ExtOldInitialConditionQuantity ) from hydrolib.core.dflowfm.extold.parser import Parser from hydrolib.core.dflowfm.extold.serializer import Serializer @@ -1027,3 +1028,11 @@ def test_serialize(self): exp_file_content, "test_serialize_expected.ext" ) as exp_file: assert_files_equal(file, exp_file) + + +def test_ext_old_initial_condition_quantity(initial_condition_quantities): + """ + Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. + """ + assert len(ExtOldInitialConditionQuantity) == 10 + all(quantity in ExtOldInitialConditionQuantity.__members__.keys() for quantity in initial_condition_quantities) From 3527c41cfde4bdfb2298e02c2849b914e433b82c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 21:16:30 +0100 Subject: [PATCH 004/193] reformat the test_ext_old_to_new.py and test the printed messages --- tests/tools/test_ext_old_to_new.py | 33 +++++++++++------------------- 1 file changed, 12 insertions(+), 21 deletions(-) diff --git a/tests/tools/test_ext_old_to_new.py b/tests/tools/test_ext_old_to_new.py index c53a402ea..4eab4f05f 100644 --- a/tests/tools/test_ext_old_to_new.py +++ b/tests/tools/test_ext_old_to_new.py @@ -1,20 +1,12 @@ -from pathlib import Path - -import pytest - -from hydrolib.core.dflowfm.common.models import Operand from hydrolib.tools.ext_old_to_new import main_converter -from ..utils import ( - assert_files_equal, - create_temp_file_from_lines, - get_temp_file, +from tests.utils import ( test_input_dir, ) class TestExtOldToNew: - def test_wind_combi_uniform_curvi(self): + def test_wind_combi_uniform_curvi(self, capsys): main_converter._verbose = True mdu_filename = ( test_input_dir @@ -25,10 +17,10 @@ def test_wind_combi_uniform_curvi(self): ) main_converter.ext_old_to_new_from_mdu(mdu_filename) - assert True - # assert isinstance(forcing.filename, TimModel) + captured = capsys.readouterr() + assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") - def test_extrapolate_slr(self): + def test_extrapolate_slr(self, capsys): main_converter._verbose = True mdu_filename = ( test_input_dir @@ -38,9 +30,10 @@ def test_extrapolate_slr(self): / "slrextrapol.mdu" ) main_converter.ext_old_to_new_from_mdu(mdu_filename) - assert True + captured = capsys.readouterr() + assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") - def test_basinsquares(self): + def test_basinsquares(self, capsys): main_converter._verbose = True mdu_filename = ( test_input_dir @@ -49,14 +42,12 @@ def test_basinsquares(self): / "c020_basinnofriction_squares" / "basinsquares.mdu" ) - try: - main_converter.ext_old_to_new_from_mdu(mdu_filename) - except Exception as e: - pass - assert True + main_converter.ext_old_to_new_from_mdu(mdu_filename) + captured = capsys.readouterr() + assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") - def test_recursive(self): + def test_recursive(self, capsys): main_converter._verbose = True dir = test_input_dir / "e02" / "f006_external_forcing" main_converter.ext_old_to_new_dir_recursive(dir) From 5d143b8f8d41e8f96c8658e315ce88a2a8f6356f Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 21:18:26 +0100 Subject: [PATCH 005/193] reformat the test_ext_old_to_new.py and test the printed messages --- tests/tools/test_ext_old_to_new.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/tools/test_ext_old_to_new.py b/tests/tools/test_ext_old_to_new.py index 4eab4f05f..9c9d6b781 100644 --- a/tests/tools/test_ext_old_to_new.py +++ b/tests/tools/test_ext_old_to_new.py @@ -49,6 +49,6 @@ def test_basinsquares(self, capsys): def test_recursive(self, capsys): main_converter._verbose = True - dir = test_input_dir / "e02" / "f006_external_forcing" - main_converter.ext_old_to_new_dir_recursive(dir) - assert True + main_converter.ext_old_to_new_dir_recursive(f"{test_input_dir}/e02/f006_external_forcing") + + From 50e54758216923bc8c72f3a3a148248a1a3a4a5b Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 21:39:24 +0100 Subject: [PATCH 006/193] add `InitialCondInterpolationMethod` class and test --- hydrolib/core/dflowfm/ext/models.py | 18 +++++++++++++++++- tests/conftest.py | 5 +++++ tests/dflowfm/test_ext.py | 6 ++++++ 3 files changed, 28 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 8209dad4c..d8ebd1492 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -14,7 +14,6 @@ INIBasedModel, INIGeneral, INIModel, - INISerializerConfig, ) from hydrolib.core.dflowfm.ini.serializer import INISerializerConfig from hydrolib.core.dflowfm.ini.util import ( @@ -360,3 +359,20 @@ def _ext(cls) -> str: @classmethod def _filename(cls) -> str: return "bnd" + + +class InitialCondInterpolationMethod(StrEnum): + """ + Enum class containing the valid values for the interpolationMethod + attribute in InitialCondition class. + + args: + constant: only if the dataFileType is "polygon" + triangulation: + average: grid cell averaging + + """ + constant = "constant" + triangulation = "triangulation" + averaging = "averaging" + allowedvaluestext = "Possible values: const (only with dataFileType = polygon)." diff --git a/tests/conftest.py b/tests/conftest.py index 1bafe25fa..1d6d6c62f 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -9,3 +9,8 @@ def initial_condition_quantities() -> List[str]: "initialverticaltemperatureprofile", "initialverticalsalinityprofile", "initialvelocityx", "initialvelocityy", "initialvelocity", "initialsalinitytopuse" ] + + +@pytest.fixture +def initial_condition_interpolation_methods() -> List[str]: + return ["constant", "averaging", "triangulation", "Possible values: const (only with dataFileType = polygon)."] diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 9ce8eb8ba..76dba46e5 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -12,6 +12,7 @@ Lateral, Meteo, MeteoForcingFileType, + InitialCondInterpolationMethod ) from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel @@ -704,3 +705,8 @@ def test_ext_model_correct_default_serializer_config(self): assert model.serializer_config.datablock_spacing == 2 assert model.serializer_config.comment_delimiter == "#" assert model.serializer_config.skip_empty_properties == True + +def test_initial_conditions_interpolation_methods(initial_condition_interpolation_methods: List[str]): + assert len(InitialCondInterpolationMethod) == 4 + all(quantity in InitialCondInterpolationMethod.__members__.keys() for quantity in initial_condition_interpolation_methods) + From 546a58f304ad7227fd9c592a36264f02bb8a6420 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 21:51:30 +0100 Subject: [PATCH 007/193] add `InitialCondFileType` class and test --- hydrolib/core/dflowfm/ext/models.py | 22 ++++++++++++++++++++++ tests/conftest.py | 5 +++++ tests/dflowfm/test_ext.py | 15 +++++++++++---- 3 files changed, 38 insertions(+), 4 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index d8ebd1492..3fbcc8754 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -376,3 +376,25 @@ class InitialCondInterpolationMethod(StrEnum): triangulation = "triangulation" averaging = "averaging" allowedvaluestext = "Possible values: const (only with dataFileType = polygon)." + + +class InitialCondFileType(StrEnum): + """ + Enum class containing the valid values for the forcingFileType + attribute in Meteo class. + + args: + arcinfo: ESRI ArcInfo interchange file (E00) format (uses basic ascii representation) + geotiff: GeoTIFF format (.tif) + sample: Sample format + 1dField: 1D field format (INI file) + polygon: Polygon format (.poli) + + """ + arcinfo = "arcinfo" + geotiff = "GeoTIFF" + sample = "sample" + d1fiels = "1dField" + polygon = "polygon" + allowedvaluestext = "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon." + diff --git a/tests/conftest.py b/tests/conftest.py index 1d6d6c62f..d2a60aa78 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -14,3 +14,8 @@ def initial_condition_quantities() -> List[str]: @pytest.fixture def initial_condition_interpolation_methods() -> List[str]: return ["constant", "averaging", "triangulation", "Possible values: const (only with dataFileType = polygon)."] + + +@pytest.fixture +def initial_condition_file_type() -> List[str]: + return ["arcinfo", "GeoTIFF", "sample", "1dField", "polygon", "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon."] diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 76dba46e5..1d4866dc2 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -12,7 +12,8 @@ Lateral, Meteo, MeteoForcingFileType, - InitialCondInterpolationMethod + InitialCondInterpolationMethod, + InitialCondFileType ) from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel @@ -706,7 +707,13 @@ def test_ext_model_correct_default_serializer_config(self): assert model.serializer_config.comment_delimiter == "#" assert model.serializer_config.skip_empty_properties == True -def test_initial_conditions_interpolation_methods(initial_condition_interpolation_methods: List[str]): - assert len(InitialCondInterpolationMethod) == 4 - all(quantity in InitialCondInterpolationMethod.__members__.keys() for quantity in initial_condition_interpolation_methods) +class TestInitialConditions: + + def test_initial_conditions_interpolation_methods(self, initial_condition_interpolation_methods: List[str]): + assert len(InitialCondInterpolationMethod) == 4 + all(quantity in InitialCondInterpolationMethod.__members__.keys() for quantity in initial_condition_interpolation_methods) + + def test_initial_condition_file_type(self, initial_condition_file_type: List[str]): + assert len(InitialCondFileType) == 6 + all(quantity in InitialCondFileType.__members__.keys() for quantity in initial_condition_file_type) From de01cb77a5d0bfa481686a6194abeb7b010656cd Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 22:24:57 +0100 Subject: [PATCH 008/193] fix initial condition tests --- hydrolib/core/dflowfm/ext/models.py | 29 +++++++++++++++++++++++++++++ tests/conftest.py | 3 ++- tests/dflowfm/test_ext.py | 7 ++++++- 3 files changed, 37 insertions(+), 2 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 3fbcc8754..b5fa0d00c 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -398,3 +398,32 @@ class InitialCondFileType(StrEnum): polygon = "polygon" allowedvaluestext = "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon." + +class InitialConditions(INIBasedModel): + """ + A `[Initial Condition]` block for use inside an external forcings file, + i.e., a [ExtModel][hydrolib.core.dflowfm.ext.models.ExtModel]. + + All lowercased attributes match with the meteo input as described in + [UM Sec.C.5.2.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.3). + """ + _header: Literal["Initial"] = "Initial" + quantity: str = QUANTITY + dataFile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") + dataFileType: InitialCondFileType = Field(alias="dataFileType") + interpolationmethod: Optional[InitialCondInterpolationMethod] = Field(alias="interpolationMethod") + operand: Optional[Operand] = OPERAND + extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") + extrapolationSearchRadius: Optional[float] = Field( + alias="extrapolationSearchRadius" + ) + averagingType: Optional[int] = AVERAGING_TYPE + averagingNumMin: Optional[float] = AVERAGING_NUM_MIN + averagingPercentile: Optional[float] = AVERAGING_PERCENTILE + + datafiletype_validator = get_enum_validator( + "dataFileType", enum=InitialCondFileType + ) + interpolationmethod_validator = get_enum_validator( + "interpolationmethod", enum=InitialCondInterpolationMethod + ) diff --git a/tests/conftest.py b/tests/conftest.py index d2a60aa78..070494fbb 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -13,9 +13,10 @@ def initial_condition_quantities() -> List[str]: @pytest.fixture def initial_condition_interpolation_methods() -> List[str]: - return ["constant", "averaging", "triangulation", "Possible values: const (only with dataFileType = polygon)."] + return ["constant", "averaging", "triangulation", "allowedvaluestext"] @pytest.fixture def initial_condition_file_type() -> List[str]: return ["arcinfo", "GeoTIFF", "sample", "1dField", "polygon", "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon."] + return ["arcinfo", "geotiff", "sample", "d1fiels", "polygon", "allowedvaluestext"] diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 1d4866dc2..918f96a3f 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -712,8 +712,13 @@ class TestInitialConditions: def test_initial_conditions_interpolation_methods(self, initial_condition_interpolation_methods: List[str]): assert len(InitialCondInterpolationMethod) == 4 - all(quantity in InitialCondInterpolationMethod.__members__.keys() for quantity in initial_condition_interpolation_methods) + assert all( + quantity in InitialCondInterpolationMethod.__members__.keys() for quantity in + initial_condition_interpolation_methods + ) def test_initial_condition_file_type(self, initial_condition_file_type: List[str]): assert len(InitialCondFileType) == 6 all(quantity in InitialCondFileType.__members__.keys() for quantity in initial_condition_file_type) + assert all(quantity in InitialCondFileType.__members__.keys() for quantity in initial_condition_file_type) + From 858c86ec156eb1be2c9156c4fe94a92c41e78870 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 22:43:02 +0100 Subject: [PATCH 009/193] create `test_meteo_forcing_file_type` to test `MeteoForcingFileType` --- tests/conftest.py | 8 ++++++++ tests/dflowfm/test_ext.py | 5 +++++ 2 files changed, 13 insertions(+) diff --git a/tests/conftest.py b/tests/conftest.py index 070494fbb..d116d1806 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -20,3 +20,11 @@ def initial_condition_interpolation_methods() -> List[str]: def initial_condition_file_type() -> List[str]: return ["arcinfo", "GeoTIFF", "sample", "1dField", "polygon", "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon."] return ["arcinfo", "geotiff", "sample", "d1fiels", "polygon", "allowedvaluestext"] + + +@pytest.fixture +def meteo_forcing_file_type() -> List[str]: + return [ + "bcAscii", "uniform", "uniMagDir", "meteoGridEqui", "spiderweb", "meteoGridCurvi", "netcdf", + "Possible values: bcAscii, netcdf, uniform." + ] diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 918f96a3f..9d55b577a 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -722,3 +722,8 @@ def test_initial_condition_file_type(self, initial_condition_file_type: List[str all(quantity in InitialCondFileType.__members__.keys() for quantity in initial_condition_file_type) assert all(quantity in InitialCondFileType.__members__.keys() for quantity in initial_condition_file_type) +class TestMeteo: + + def test_meteo_forcing_file_type(self, meteo_forcing_file_type: List[str]): + assert len(MeteoForcingFileType) == 8 + assert all(quantity.value in meteo_forcing_file_type for quantity in MeteoForcingFileType.__members__.values()) From 0e2b0752038b94988445a8eed6e9a465b4d2f71a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 22:49:23 +0100 Subject: [PATCH 010/193] change tests to check for the parameter values not the parameter name --- tests/conftest.py | 3 +-- tests/dflowfm/test_ext.py | 9 +++++---- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/tests/conftest.py b/tests/conftest.py index d116d1806..e5138984a 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -13,13 +13,12 @@ def initial_condition_quantities() -> List[str]: @pytest.fixture def initial_condition_interpolation_methods() -> List[str]: - return ["constant", "averaging", "triangulation", "allowedvaluestext"] + return ["constant", "averaging", "triangulation", "Possible values: const (only with dataFileType = polygon)."] @pytest.fixture def initial_condition_file_type() -> List[str]: return ["arcinfo", "GeoTIFF", "sample", "1dField", "polygon", "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon."] - return ["arcinfo", "geotiff", "sample", "d1fiels", "polygon", "allowedvaluestext"] @pytest.fixture diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 9d55b577a..69bf25654 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -713,14 +713,15 @@ class TestInitialConditions: def test_initial_conditions_interpolation_methods(self, initial_condition_interpolation_methods: List[str]): assert len(InitialCondInterpolationMethod) == 4 assert all( - quantity in InitialCondInterpolationMethod.__members__.keys() for quantity in - initial_condition_interpolation_methods + quantity.value in initial_condition_interpolation_methods for quantity in + InitialCondInterpolationMethod.__members__.values() ) def test_initial_condition_file_type(self, initial_condition_file_type: List[str]): assert len(InitialCondFileType) == 6 - all(quantity in InitialCondFileType.__members__.keys() for quantity in initial_condition_file_type) - assert all(quantity in InitialCondFileType.__members__.keys() for quantity in initial_condition_file_type) + assert all( + quantity.value in initial_condition_file_type for quantity in InitialCondFileType.__members__.values() + ) class TestMeteo: From 6411cd2682e449f85d4bffd7dff919474744171e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 22:57:06 +0100 Subject: [PATCH 011/193] test `MeteoInterpolationMethod` in the `test_meteo_interpolation_methods` --- tests/conftest.py | 5 +++++ tests/dflowfm/test_ext.py | 8 +++++++- 2 files changed, 12 insertions(+), 1 deletion(-) diff --git a/tests/conftest.py b/tests/conftest.py index e5138984a..da866ed40 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -27,3 +27,8 @@ def meteo_forcing_file_type() -> List[str]: "bcAscii", "uniform", "uniMagDir", "meteoGridEqui", "spiderweb", "meteoGridCurvi", "netcdf", "Possible values: bcAscii, netcdf, uniform." ] + + +@pytest.fixture +def meteo_interpolation_methods() -> List[str]: + return ["nearestNb", "linearSpaceTime", "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). "] diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 69bf25654..9de89a8ef 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -13,8 +13,10 @@ Meteo, MeteoForcingFileType, InitialCondInterpolationMethod, - InitialCondFileType + InitialCondFileType, + MeteoInterpolationMethod ) + from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel @@ -725,6 +727,10 @@ def test_initial_condition_file_type(self, initial_condition_file_type: List[str class TestMeteo: + def test_meteo_interpolation_methods(self, meteo_interpolation_methods: List[str]): + assert len(MeteoInterpolationMethod) == 3 + assert all(quantity.value in meteo_interpolation_methods for quantity in InitialCondInterpolationMethod.__members__.values()) + def test_meteo_forcing_file_type(self, meteo_forcing_file_type: List[str]): assert len(MeteoForcingFileType) == 8 assert all(quantity.value in meteo_forcing_file_type for quantity in MeteoForcingFileType.__members__.values()) From 4df1b1606092e5f5ec543341a33197dc96ab29d8 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Sun, 17 Nov 2024 23:52:22 +0100 Subject: [PATCH 012/193] reformat and test the Meteo class --- hydrolib/core/dflowfm/ext/models.py | 12 +++- tests/conftest.py | 11 +++ tests/dflowfm/test_ext.py | 105 +++++++++++++++++++++++++++- 3 files changed, 123 insertions(+), 5 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index b5fa0d00c..1e37a85d3 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -28,6 +28,12 @@ from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none +QUANTITY: str = Field(alias="QUANTITY") +AVERAGING_TYPE: Optional[int] = Field(alias="averagingType") +AVERAGING_NUM_MIN: Optional[float] = Field(alias="averagingNumMin") +AVERAGING_PERCENTILE: Optional[float] = Field(alias="averagingPercentile") +OPERAND: Optional[Operand] = Field(Operand.override.value, alias="operand") + class Boundary(INIBasedModel): """ @@ -43,7 +49,7 @@ class Boundary(INIBasedModel): ) _header: Literal["Boundary"] = "Boundary" - quantity: str = Field(alias="quantity") + quantity: str = QUANTITY nodeid: Optional[str] = Field(alias="nodeId") locationfile: DiskOnlyFileModel = Field( default_factory=lambda: DiskOnlyFileModel(None), alias="locationFile" @@ -291,7 +297,7 @@ def _get_unknown_keyword_error_manager(cls) -> Optional[UnknownKeywordErrorManag ) _header: Literal["Meteo"] = "Meteo" - quantity: str = Field(alias="quantity") + quantity: str = QUANTITY forcingfile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field( alias="forcingFile" ) @@ -302,7 +308,7 @@ def _get_unknown_keyword_error_manager(cls) -> Optional[UnknownKeywordErrorManag interpolationmethod: Optional[MeteoInterpolationMethod] = Field( alias="interpolationMethod" ) - operand: Optional[Operand] = Field(Operand.override.value, alias="operand") + operand: Optional[Operand] = OPERAND extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") extrapolationSearchRadius: Optional[float] = Field( alias="extrapolationSearchRadius" diff --git a/tests/conftest.py b/tests/conftest.py index da866ed40..ab3108821 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,5 +1,6 @@ import pytest from typing import List +from pathlib import Path @pytest.fixture @@ -32,3 +33,13 @@ def meteo_forcing_file_type() -> List[str]: @pytest.fixture def meteo_interpolation_methods() -> List[str]: return ["nearestNb", "linearSpaceTime", "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). "] + + +@pytest.fixture +def time_series_file() -> Path: + return Path("tests/data/inputs/tim/single_data_for_timeseries.tim") + + +@pytest.fixture +def boundary_condition_file() -> Path: + return Path("tests/data/inputs/dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc") diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 9de89a8ef..234bc6294 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -20,7 +20,7 @@ from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel -from ..utils import test_data_dir, test_input_dir +from tests.utils import test_data_dir, test_input_dir class TestModels: @@ -725,12 +725,113 @@ def test_initial_condition_file_type(self, initial_condition_file_type: List[str quantity.value in initial_condition_file_type for quantity in InitialCondFileType.__members__.values() ) + class TestMeteo: def test_meteo_interpolation_methods(self, meteo_interpolation_methods: List[str]): assert len(MeteoInterpolationMethod) == 3 - assert all(quantity.value in meteo_interpolation_methods for quantity in InitialCondInterpolationMethod.__members__.values()) + assert all(quantity.value in meteo_interpolation_methods for quantity in MeteoInterpolationMethod.__members__.values()) def test_meteo_forcing_file_type(self, meteo_forcing_file_type: List[str]): assert len(MeteoForcingFileType) == 8 assert all(quantity.value in meteo_forcing_file_type for quantity in MeteoForcingFileType.__members__.values()) + + def test_meteo_initialization(self): + data = { + "quantity": "rainfall", + "forcingfile": ForcingModel(), + "forcingfiletype": MeteoForcingFileType.bcascii, + "targetmaskfile": None, + "targetmaskinvert": False, + "interpolationmethod": None, + } + meteo = Meteo(**data) + assert meteo.quantity == "rainfall" + assert isinstance(meteo.forcingfile, ForcingModel) + assert meteo.forcingfiletype == MeteoForcingFileType.bcascii + + def test_default_values(self): + meteo = Meteo( + quantity="rainfall", + forcingfile=ForcingModel(), + forcingfiletype=MeteoForcingFileType.uniform, + ) + assert meteo.targetmaskfile is None + assert meteo.targetmaskinvert is None + assert meteo.interpolationmethod is None + assert meteo.operand == "O" + assert meteo.extrapolationAllowed is None + assert meteo.extrapolationSearchRadius is None + assert meteo.averagingType is None + assert meteo.averagingNumMin is None + assert meteo.averagingPercentile is None + + def test_setting_optional_fields(self): + meteo = Meteo( + quantity="rainfall", + forcingfile=ForcingModel(), + forcingfiletype=MeteoForcingFileType.uniform, + targetmaskfile=None, + targetmaskinvert=True, + interpolationmethod=MeteoInterpolationMethod.nearestnb, + operand="O", + extrapolationAllowed=True, + extrapolationSearchRadius=10, + averagingType=1, + averagingNumMin=0.5, + averagingPercentile=90, + ) + assert meteo.targetmaskfile is None + assert meteo.targetmaskinvert is True + assert meteo.interpolationmethod == MeteoInterpolationMethod.nearestnb + assert meteo.operand == "O" + assert meteo.extrapolationAllowed is True + assert meteo.extrapolationSearchRadius == 10 + assert meteo.averagingType == 1 + assert meteo.averagingNumMin == 0.5 + assert meteo.averagingPercentile == 90 + + def test_invalid_forcingfiletype(self): + with pytest.raises(ValueError): + Meteo( + quantity="rainfall", + forcingfile=ForcingModel(), + forcingfiletype="invalidType", + ) + + def test_invalid_interpolationmethod(self): + with pytest.raises(ValueError): + Meteo( + quantity="rainfall", + forcingfile=ForcingModel(), + forcingfiletype=MeteoForcingFileType.uniform, + interpolationmethod="invalidMethod", + ) + + def test_is_intermediate_link(self): + meteo = Meteo( + quantity="rainfall", + forcingfile=ForcingModel(), + forcingfiletype=MeteoForcingFileType.uniform, + ) + assert meteo.is_intermediate_link() is True + + def test_initialize_with_boundary_condition_file(self, boundary_condition_file: Path): + meteo = Meteo( + quantity="rainfall", + forcingfile=boundary_condition_file, + forcingfiletype=MeteoForcingFileType.bcascii, + ) + assert isinstance(meteo.forcingfile, DiskOnlyFileModel) + assert meteo.forcingfile.filepath == boundary_condition_file + assert meteo.forcingfiletype == MeteoForcingFileType.bcascii + + def test_initialize_with_time_series_file(self, time_series_file: Path): + meteo = Meteo( + quantity="rainfall", + forcingfile=time_series_file, + forcingfiletype=MeteoForcingFileType.bcascii, + ) + assert isinstance(meteo.forcingfile, DiskOnlyFileModel) + assert meteo.forcingfile.filepath == time_series_file + assert meteo.forcingfiletype == MeteoForcingFileType.bcascii From b6ff6b17d911e844533636d7ae8f7805a7c291c4 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 00:28:32 +0100 Subject: [PATCH 013/193] clean tests that were moved to the TestMeteo test class --- tests/dflowfm/test_ext.py | 24 +----------------------- 1 file changed, 1 insertion(+), 23 deletions(-) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 234bc6294..c308cc884 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -616,7 +616,7 @@ def _create_meteo_dict(self) -> Dict: @pytest.mark.parametrize( ("missing_field", "alias_field"), [ - ("quantity", "quantity"), + ("quantity", "QUANTITY"), ("forcingfile", "forcingFile"), ("forcingfiletype", "forcingFileType"), ], @@ -631,28 +631,6 @@ def test_missing_required_fields(self, missing_field, alias_field): expected_message = f"{alias_field}\n field required " assert expected_message in str(error.value) - def test_initialize_forcingfile_with_timfile_initializes_timmodel(self): - forcingfile = test_input_dir / "tim" / "single_data_for_timeseries.tim" - values = self._create_meteo_dict() - values["forcingfile"] = forcingfile - - meteo = Meteo(**values) - - assert isinstance(meteo.forcingfile, TimModel) - - def test_initialize_forcingfile_with_bcfile_initializes_forcingmodel(self): - forcingfile = ( - test_input_dir - / "dflowfm_individual_files" - / "FlowFM_boundaryconditions2d_and_vectors.bc" - ) - values = self._create_meteo_dict() - values["forcingfile"] = forcingfile - - meteo = Meteo(**values) - - assert isinstance(meteo.forcingfile, ForcingModel) - def test_construct_from_file_with_tim(self): input_ext = ( test_input_dir From 0efb1d140d3b7226a7687567b11a9f1b87473a15 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 00:37:47 +0100 Subject: [PATCH 014/193] move `test_missing_required_fields` to the separate `TestMeteo` class --- tests/dflowfm/test_ext.py | 56 ++++++++++++++++++--------------------- 1 file changed, 26 insertions(+), 30 deletions(-) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index c308cc884..73c4bf564 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -602,35 +602,6 @@ class TestMeteo: """Class to test all methods contained in the hydrolib.core.dflowfm.ext.models.Meteo class""" - def _create_meteo_dict(self) -> Dict: - dict_values = { - "quantity": "rainfall", - "forcingfile": ForcingModel(), - "forcingfiletype": MeteoForcingFileType.bcascii, - "targetmaskfile": None, - "targetmaskinvert": False, - "interpolationmethod": None, - } - return dict_values - - @pytest.mark.parametrize( - ("missing_field", "alias_field"), - [ - ("quantity", "QUANTITY"), - ("forcingfile", "forcingFile"), - ("forcingfiletype", "forcingFileType"), - ], - ) - def test_missing_required_fields(self, missing_field, alias_field): - dict_values = self._create_meteo_dict() - del dict_values[missing_field] - - with pytest.raises(ValidationError) as error: - Meteo(**dict_values) - - expected_message = f"{alias_field}\n field required " - assert expected_message in str(error.value) - def test_construct_from_file_with_tim(self): input_ext = ( test_input_dir @@ -777,7 +748,7 @@ def test_invalid_forcingfiletype(self): forcingfiletype="invalidType", ) - def test_invalid_interpolationmethod(self): + def test_invalid_interpolation_method(self): with pytest.raises(ValueError): Meteo( quantity="rainfall", @@ -786,6 +757,31 @@ def test_invalid_interpolationmethod(self): interpolationmethod="invalidMethod", ) + @pytest.mark.parametrize( + ("missing_field", "alias_field"), + [ + ("quantity", "QUANTITY"), + ("forcingfile", "forcingFile"), + ("forcingfiletype", "forcingFileType"), + ], + ) + def test_missing_required_fields(self, missing_field, alias_field): + dict_values = { + "quantity": "rainfall", + "forcingfile": ForcingModel(), + "forcingfiletype": MeteoForcingFileType.bcascii, + "targetmaskfile": None, + "targetmaskinvert": False, + "interpolationmethod": None, + } + del dict_values[missing_field] + + with pytest.raises(ValidationError) as error: + Meteo(**dict_values) + + expected_message = f"{alias_field}\n field required " + assert expected_message in str(error.value) + def test_is_intermediate_link(self): meteo = Meteo( quantity="rainfall", From 77a4f78c90565acc7ab131d0ea586768554c50b5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 00:40:02 +0100 Subject: [PATCH 015/193] solve the compare floating point values --- tests/dflowfm/test_ext.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 73c4bf564..6fb1d65b8 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -3,7 +3,7 @@ import pytest from pydantic.v1 import ValidationError - +import numpy as np from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import Constant, ForcingModel, RealTime from hydrolib.core.dflowfm.ext.models import ( @@ -430,7 +430,7 @@ def test_dischargeforcings_fromfile(self): m = ExtModel(filepath) assert len(m.lateral) == 72 assert m.lateral[0].discharge == RealTime.realtime - assert m.lateral[1].discharge == 1.23 + assert np.isclose(m.lateral[1].discharge, 1.23) assert isinstance(m.lateral[3].discharge, ForcingModel) assert isinstance(m.lateral[3].discharge.forcing[0], Constant) assert m.lateral[3].discharge.forcing[0].name == "10637" @@ -737,7 +737,7 @@ def test_setting_optional_fields(self): assert meteo.extrapolationAllowed is True assert meteo.extrapolationSearchRadius == 10 assert meteo.averagingType == 1 - assert meteo.averagingNumMin == 0.5 + assert np.isclose(meteo.averagingNumMin, 0.5) assert meteo.averagingPercentile == 90 def test_invalid_forcingfiletype(self): From a3b335b5cd25ce57361936ca9e870f5b2313acac Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 00:45:33 +0100 Subject: [PATCH 016/193] rename the old `TestMeteo` to `TestExtModel` --- tests/dflowfm/test_ext.py | 101 +++++++++++++++++++------------------- 1 file changed, 51 insertions(+), 50 deletions(-) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 6fb1d65b8..bea9ca19c 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -598,65 +598,66 @@ def test_given_dict_values_doesnot_raise(self, dict_values: dict): == expected_locationfile ) - class TestMeteo: - """Class to test all methods contained in the - hydrolib.core.dflowfm.ext.models.Meteo class""" - def test_construct_from_file_with_tim(self): - input_ext = ( - test_input_dir - / "e02/f006_external_forcing/c063_rain_tim/rainschematic.ext" - ) +class TestExtModel: + """Class to test all methods contained in the + hydrolib.core.dflowfm.ext.models.ExtModel class""" - ext_model = ExtModel(input_ext) + def test_construct_from_file_with_tim(self): + input_ext = ( + test_input_dir + / "e02/f006_external_forcing/c063_rain_tim/rainschematic.ext" + ) - assert isinstance(ext_model, ExtModel) - assert len(ext_model.meteo) == 1 - assert ext_model.meteo[0].quantity == "rainfall_rate" - assert isinstance(ext_model.meteo[0].forcingfile, TimModel) - assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.uniform + ext_model = ExtModel(input_ext) - assert len(ext_model.meteo[0].forcingfile.timeseries) == 14 + assert isinstance(ext_model, ExtModel) + assert len(ext_model.meteo) == 1 + assert ext_model.meteo[0].quantity == "rainfall_rate" + assert isinstance(ext_model.meteo[0].forcingfile, TimModel) + assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.uniform - def test_construct_from_file_with_bc(self): - input_ext = ( - test_input_dir - / "e02/f006_external_forcing/c069_rain_bc/rainschematic.ext" - ) + assert len(ext_model.meteo[0].forcingfile.timeseries) == 14 - ext_model = ExtModel(input_ext) + def test_construct_from_file_with_bc(self): + input_ext = ( + test_input_dir + / "e02/f006_external_forcing/c069_rain_bc/rainschematic.ext" + ) - assert isinstance(ext_model, ExtModel) - assert len(ext_model.meteo) == 1 - assert ext_model.meteo[0].quantity == "rainfall_rate" - assert isinstance(ext_model.meteo[0].forcingfile, ForcingModel) - assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.bcascii + ext_model = ExtModel(input_ext) - def test_construct_from_file_with_netcdf(self): - input_ext = ( - test_input_dir - / "e02/f006_external_forcing/c067_rain_netcdf_stations/rainschematic.ext" - ) + assert isinstance(ext_model, ExtModel) + assert len(ext_model.meteo) == 1 + assert ext_model.meteo[0].quantity == "rainfall_rate" + assert isinstance(ext_model.meteo[0].forcingfile, ForcingModel) + assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.bcascii + + def test_construct_from_file_with_netcdf(self): + input_ext = ( + test_input_dir + / "e02/f006_external_forcing/c067_rain_netcdf_stations/rainschematic.ext" + ) + + ext_model = ExtModel(input_ext) + + assert isinstance(ext_model, ExtModel) + assert len(ext_model.meteo) == 1 + assert ext_model.meteo[0].quantity == "rainfall" + assert isinstance(ext_model.meteo[0].forcingfile, DiskOnlyFileModel) + assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.netcdf + + + def test_ext_model_correct_default_serializer_config(self): + model = ExtModel() - ext_model = ExtModel(input_ext) - - assert isinstance(ext_model, ExtModel) - assert len(ext_model.meteo) == 1 - assert ext_model.meteo[0].quantity == "rainfall" - assert isinstance(ext_model.meteo[0].forcingfile, DiskOnlyFileModel) - assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.netcdf - - class TestExtModel: - def test_ext_model_correct_default_serializer_config(self): - model = ExtModel() - - assert model.serializer_config.section_indent == 0 - assert model.serializer_config.property_indent == 0 - assert model.serializer_config.datablock_indent == 8 - assert model.serializer_config.float_format == "" - assert model.serializer_config.datablock_spacing == 2 - assert model.serializer_config.comment_delimiter == "#" - assert model.serializer_config.skip_empty_properties == True + assert model.serializer_config.section_indent == 0 + assert model.serializer_config.property_indent == 0 + assert model.serializer_config.datablock_indent == 8 + assert model.serializer_config.float_format == "" + assert model.serializer_config.datablock_spacing == 2 + assert model.serializer_config.comment_delimiter == "#" + assert model.serializer_config.skip_empty_properties == True class TestInitialConditions: From 1a17cd2f154a2cecc2422b9ee820f99508e12f09 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 00:55:53 +0100 Subject: [PATCH 017/193] reformat the `TestExtModel` --- tests/conftest.py | 5 +++++ tests/dflowfm/test_ext.py | 24 ++++++------------------ 2 files changed, 11 insertions(+), 18 deletions(-) diff --git a/tests/conftest.py b/tests/conftest.py index ab3108821..40bac9788 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -35,6 +35,10 @@ def meteo_interpolation_methods() -> List[str]: return ["nearestNb", "linearSpaceTime", "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). "] +@pytest.fixture +def input_files_dir() -> Path: + return Path("tests/data/input") + @pytest.fixture def time_series_file() -> Path: return Path("tests/data/inputs/tim/single_data_for_timeseries.tim") @@ -43,3 +47,4 @@ def time_series_file() -> Path: @pytest.fixture def boundary_condition_file() -> Path: return Path("tests/data/inputs/dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc") + diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index bea9ca19c..4836e56cb 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -603,11 +603,8 @@ class TestExtModel: """Class to test all methods contained in the hydrolib.core.dflowfm.ext.models.ExtModel class""" - def test_construct_from_file_with_tim(self): - input_ext = ( - test_input_dir - / "e02/f006_external_forcing/c063_rain_tim/rainschematic.ext" - ) + def test_construct_from_file_with_tim(self, input_files_dir: Path): + input_ext = input_files_dir.joinpath("e02/f006_external_forcing/c063_rain_tim/rainschematic.ext") ext_model = ExtModel(input_ext) @@ -619,12 +616,8 @@ def test_construct_from_file_with_tim(self): assert len(ext_model.meteo[0].forcingfile.timeseries) == 14 - def test_construct_from_file_with_bc(self): - input_ext = ( - test_input_dir - / "e02/f006_external_forcing/c069_rain_bc/rainschematic.ext" - ) - + def test_construct_from_file_with_bc(self, input_files_dir: Path): + input_ext = input_files_dir.joinpath("e02/f006_external_forcing/c069_rain_bc/rainschematic.ext") ext_model = ExtModel(input_ext) assert isinstance(ext_model, ExtModel) @@ -633,12 +626,8 @@ def test_construct_from_file_with_bc(self): assert isinstance(ext_model.meteo[0].forcingfile, ForcingModel) assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.bcascii - def test_construct_from_file_with_netcdf(self): - input_ext = ( - test_input_dir - / "e02/f006_external_forcing/c067_rain_netcdf_stations/rainschematic.ext" - ) - + def test_construct_from_file_with_netcdf(self, input_files_dir: Path): + input_ext = input_files_dir.joinpath("e02/f006_external_forcing/c067_rain_netcdf_stations/rainschematic.ext") ext_model = ExtModel(input_ext) assert isinstance(ext_model, ExtModel) @@ -647,7 +636,6 @@ def test_construct_from_file_with_netcdf(self): assert isinstance(ext_model.meteo[0].forcingfile, DiskOnlyFileModel) assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.netcdf - def test_ext_model_correct_default_serializer_config(self): model = ExtModel() From ed71a0b4727e3dc92aef429d0f541595d42feb62 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 11:04:46 +0100 Subject: [PATCH 018/193] add the cases for time_series/boundary condition files as forcing files to the `TestMeteo` --- tests/dflowfm/test_ext.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 4836e56cb..7d9e75090 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -785,7 +785,7 @@ def test_initialize_with_boundary_condition_file(self, boundary_condition_file: forcingfile=boundary_condition_file, forcingfiletype=MeteoForcingFileType.bcascii, ) - assert isinstance(meteo.forcingfile, DiskOnlyFileModel) + assert isinstance(meteo.forcingfile, ForcingModel) assert meteo.forcingfile.filepath == boundary_condition_file assert meteo.forcingfiletype == MeteoForcingFileType.bcascii @@ -795,6 +795,6 @@ def test_initialize_with_time_series_file(self, time_series_file: Path): forcingfile=time_series_file, forcingfiletype=MeteoForcingFileType.bcascii, ) - assert isinstance(meteo.forcingfile, DiskOnlyFileModel) + assert isinstance(meteo.forcingfile, TimModel) assert meteo.forcingfile.filepath == time_series_file assert meteo.forcingfiletype == MeteoForcingFileType.bcascii From 16e4ee1c50c5ebb088160095b00fcc13d0d2b94c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 12:20:54 +0100 Subject: [PATCH 019/193] correct field names in the `InitialCondition` class --- hydrolib/core/dflowfm/ext/models.py | 6 +++--- tests/conftest.py | 9 ++++----- 2 files changed, 7 insertions(+), 8 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 1e37a85d3..609bd9648 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -415,8 +415,8 @@ class InitialConditions(INIBasedModel): """ _header: Literal["Initial"] = "Initial" quantity: str = QUANTITY - dataFile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") - dataFileType: InitialCondFileType = Field(alias="dataFileType") + datafile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") + datafiletype: InitialCondFileType = Field(alias="dataFileType") interpolationmethod: Optional[InitialCondInterpolationMethod] = Field(alias="interpolationMethod") operand: Optional[Operand] = OPERAND extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") @@ -428,7 +428,7 @@ class InitialConditions(INIBasedModel): averagingPercentile: Optional[float] = AVERAGING_PERCENTILE datafiletype_validator = get_enum_validator( - "dataFileType", enum=InitialCondFileType + "datafiletype", enum=InitialCondFileType ) interpolationmethod_validator = get_enum_validator( "interpolationmethod", enum=InitialCondInterpolationMethod diff --git a/tests/conftest.py b/tests/conftest.py index 40bac9788..706e901bb 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -39,12 +39,11 @@ def meteo_interpolation_methods() -> List[str]: def input_files_dir() -> Path: return Path("tests/data/input") -@pytest.fixture -def time_series_file() -> Path: - return Path("tests/data/inputs/tim/single_data_for_timeseries.tim") +@pytest.fixture +def time_series_file(input_files_dir: Path) -> Path: return input_files_dir.joinpath("tim/single_data_for_timeseries.tim") @pytest.fixture -def boundary_condition_file() -> Path: - return Path("tests/data/inputs/dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc") +def boundary_condition_file(input_files_dir: Path) -> Path: + return input_files_dir.joinpath("dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc") From 50e9ef2936dddad9729b34b79e889ec5cf6d662c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 12:54:05 +0100 Subject: [PATCH 020/193] test the `InitialConditions` class for all possible behaviours --- hydrolib/core/dflowfm/ext/models.py | 47 ++++++--- tests/conftest.py | 9 ++ tests/dflowfm/test_ext.py | 143 ++++++++++++++++++++++++---- 3 files changed, 167 insertions(+), 32 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 609bd9648..15485c457 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -28,12 +28,6 @@ from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none -QUANTITY: str = Field(alias="QUANTITY") -AVERAGING_TYPE: Optional[int] = Field(alias="averagingType") -AVERAGING_NUM_MIN: Optional[float] = Field(alias="averagingNumMin") -AVERAGING_PERCENTILE: Optional[float] = Field(alias="averagingPercentile") -OPERAND: Optional[Operand] = Field(Operand.override.value, alias="operand") - class Boundary(INIBasedModel): """ @@ -49,7 +43,7 @@ class Boundary(INIBasedModel): ) _header: Literal["Boundary"] = "Boundary" - quantity: str = QUANTITY + quantity: str = Field(alias="QUANTITY") nodeid: Optional[str] = Field(alias="nodeId") locationfile: DiskOnlyFileModel = Field( default_factory=lambda: DiskOnlyFileModel(None), alias="locationFile" @@ -297,7 +291,7 @@ def _get_unknown_keyword_error_manager(cls) -> Optional[UnknownKeywordErrorManag ) _header: Literal["Meteo"] = "Meteo" - quantity: str = QUANTITY + quantity: str = Field(alias="QUANTITY") forcingfile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field( alias="forcingFile" ) @@ -308,7 +302,7 @@ def _get_unknown_keyword_error_manager(cls) -> Optional[UnknownKeywordErrorManag interpolationmethod: Optional[MeteoInterpolationMethod] = Field( alias="interpolationMethod" ) - operand: Optional[Operand] = OPERAND + operand: Optional[Operand] = Field(Operand.override.value, alias="operand") extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") extrapolationSearchRadius: Optional[float] = Field( alias="extrapolationSearchRadius" @@ -405,6 +399,30 @@ class InitialCondFileType(StrEnum): allowedvaluestext = "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon." +class AveragingTypeMethod(StrEnum): + """ + Enum class containing the valid values for the averaging type + attribute in InitialCondition class. + + args: + mean: mean value + nearestNb: nearest neighbour + max: maximum value + min: minimum value + invDist: inverse distance weighting (1/distance) + minAbs: minimum absolute value + median: median value + """ + mean = "mean" + nearestNB = "nearestNb" + max = "max" + min = "min" + invDist = "invDist" + minAbs = "minAbs" + median = "median" + allowedvaluestext = "Possible values: mean, nearestNb, max, min, invDist, minAbs, median." + + class InitialConditions(INIBasedModel): """ A `[Initial Condition]` block for use inside an external forcings file, @@ -414,18 +432,19 @@ class InitialConditions(INIBasedModel): [UM Sec.C.5.2.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.3). """ _header: Literal["Initial"] = "Initial" - quantity: str = QUANTITY + quantity: str = Field(alias="QUANTITY") datafile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") datafiletype: InitialCondFileType = Field(alias="dataFileType") interpolationmethod: Optional[InitialCondInterpolationMethod] = Field(alias="interpolationMethod") - operand: Optional[Operand] = OPERAND + operand: Optional[Operand] = Field(Operand.override.value, alias="operand") extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") extrapolationSearchRadius: Optional[float] = Field( alias="extrapolationSearchRadius" ) - averagingType: Optional[int] = AVERAGING_TYPE - averagingNumMin: Optional[float] = AVERAGING_NUM_MIN - averagingPercentile: Optional[float] = AVERAGING_PERCENTILE + averagingtype: Optional[AveragingTypeMethod] = Field(alias="averagingType") + averagingnummin: Optional[int] = Field(default=1, alias="averagingNumMin") + averagingpercentile: Optional[float] = Field(default=0, alias="averagingPercentile") + datafiletype_validator = get_enum_validator( "datafiletype", enum=InitialCondFileType diff --git a/tests/conftest.py b/tests/conftest.py index 706e901bb..405923249 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -35,6 +35,14 @@ def meteo_interpolation_methods() -> List[str]: return ["nearestNb", "linearSpaceTime", "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). "] +@pytest.fixture +def initial_cond_averaging_type() -> List[str]: + return [ + "mean", "nearestNb", "max", "min", "invDist", "minAbs", "median", + "Possible values: mean, nearestNb, max, min, invDist, minAbs, median." + ] + + @pytest.fixture def input_files_dir() -> Path: return Path("tests/data/input") @@ -43,6 +51,7 @@ def input_files_dir() -> Path: @pytest.fixture def time_series_file(input_files_dir: Path) -> Path: return input_files_dir.joinpath("tim/single_data_for_timeseries.tim") + @pytest.fixture def boundary_condition_file(input_files_dir: Path) -> Path: return input_files_dir.joinpath("dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc") diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 7d9e75090..15fa5cba2 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -14,13 +14,15 @@ MeteoForcingFileType, InitialCondInterpolationMethod, InitialCondFileType, - MeteoInterpolationMethod + MeteoInterpolationMethod, + AveragingTypeMethod, + InitialConditions ) from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel -from tests.utils import test_data_dir, test_input_dir +from tests.utils import test_data_dir class TestModels: @@ -648,22 +650,6 @@ def test_ext_model_correct_default_serializer_config(self): assert model.serializer_config.skip_empty_properties == True -class TestInitialConditions: - - def test_initial_conditions_interpolation_methods(self, initial_condition_interpolation_methods: List[str]): - assert len(InitialCondInterpolationMethod) == 4 - assert all( - quantity.value in initial_condition_interpolation_methods for quantity in - InitialCondInterpolationMethod.__members__.values() - ) - - def test_initial_condition_file_type(self, initial_condition_file_type: List[str]): - assert len(InitialCondFileType) == 6 - assert all( - quantity.value in initial_condition_file_type for quantity in InitialCondFileType.__members__.values() - ) - - class TestMeteo: def test_meteo_interpolation_methods(self, meteo_interpolation_methods: List[str]): @@ -798,3 +784,124 @@ def test_initialize_with_time_series_file(self, time_series_file: Path): assert isinstance(meteo.forcingfile, TimModel) assert meteo.forcingfile.filepath == time_series_file assert meteo.forcingfiletype == MeteoForcingFileType.bcascii + + +class TestInitialConditions: + + def test_initial_conditions_interpolation_methods(self, initial_condition_interpolation_methods: List[str]): + assert len(InitialCondInterpolationMethod) == 4 + assert all( + quantity.value in initial_condition_interpolation_methods for quantity in + InitialCondInterpolationMethod.__members__.values() + ) + + def test_initial_condition_file_type(self, initial_condition_file_type: List[str]): + assert len(InitialCondFileType) == 6 + assert all( + quantity.value in initial_condition_file_type for quantity in InitialCondFileType.__members__.values() + ) + + def test_averaging_type_file_type(self, initial_cond_averaging_type: List[str]): + assert len(AveragingTypeMethod) == 8 + assert all( + quantity.value in initial_cond_averaging_type for quantity in AveragingTypeMethod.__members__.values() + ) + + def test_initialization(self): + data = { + "quantity": "waterlevel", + "datafile": ForcingModel(), + "datafiletype": InitialCondFileType.arcinfo, + "interpolationmethod": InitialCondInterpolationMethod.constant, + "operand": "O", + "extrapolationAllowed": True, + "extrapolationSearchRadius": 10.0, + "averagingtype": AveragingTypeMethod.mean, + "averagingnummin": 2, + "averagingpercentile": 95.0, + } + initial_conditions = InitialConditions(**data) + assert initial_conditions.quantity == "waterlevel" + assert isinstance(initial_conditions.datafile, ForcingModel) + assert initial_conditions.datafiletype == InitialCondFileType.arcinfo + assert initial_conditions.interpolationmethod == InitialCondInterpolationMethod.constant + assert initial_conditions.operand == "O" + assert initial_conditions.extrapolationAllowed is True + assert np.isclose(initial_conditions.extrapolationSearchRadius, 10.0) + assert initial_conditions.averagingtype == AveragingTypeMethod.mean + assert initial_conditions.averagingnummin == 2 + assert np.isclose(initial_conditions.averagingpercentile, 95.0) + + def test_default_values(self): + initial_conditions = InitialConditions( + quantity="waterlevel", + datafile=ForcingModel(), + datafiletype=InitialCondFileType.arcinfo, + ) + assert initial_conditions.interpolationmethod is None + assert initial_conditions.operand == "O" + assert initial_conditions.extrapolationAllowed is None + assert initial_conditions.extrapolationSearchRadius is None + assert initial_conditions.averagingtype is None + assert initial_conditions.averagingnummin == 1 + assert np.isclose(initial_conditions.averagingpercentile, 0.0) + + def test_setting_optional_fields(self): + initial_conditions = InitialConditions( + quantity="waterlevel", + datafile=ForcingModel(), + datafiletype=InitialCondFileType.arcinfo, + interpolationmethod=InitialCondInterpolationMethod.constant, + operand="O", + extrapolationAllowed=True, + extrapolationSearchRadius=10.0, + averagingtype=AveragingTypeMethod.mean, + averagingnummin=2, + averagingpercentile=95.0, + ) + assert initial_conditions.interpolationmethod == InitialCondInterpolationMethod.constant + assert initial_conditions.operand == "O" + assert initial_conditions.extrapolationAllowed is True + assert np.isclose(initial_conditions.extrapolationSearchRadius, 10.0) + assert initial_conditions.averagingtype == AveragingTypeMethod.mean + assert initial_conditions.averagingnummin == 2 + assert np.isclose(initial_conditions.averagingpercentile, 95.0) + + def test_invalid_datafiletype(self): + with pytest.raises(ValueError): + InitialConditions( + quantity="waterlevel", + datafile=ForcingModel(), + datafiletype="invalidType", + ) + + def test_invalid_interpolationmethod(self): + with pytest.raises(ValueError): + InitialConditions( + quantity="waterlevel", + datafile=ForcingModel(), + datafiletype=InitialCondFileType.arcinfo, + interpolationmethod="invalidMethod", + ) + + @pytest.mark.parametrize( + ("missing_field", "alias_field"), + [ + ("quantity", "QUANTITY"), + ("datafile", "dataFile"), + ("datafiletype", "dataFileType"), + ], + ) + def test_missing_required_fields(self, missing_field, alias_field): + dict_values = { + "quantity": "rainfall", + "datafile": ForcingModel(), + "datafiletype": InitialCondFileType.arcinfo, + } + del dict_values[missing_field] + + with pytest.raises(ValidationError) as error: + InitialConditions(**dict_values) + + expected_message = f"{alias_field}\n field required " + assert expected_message in str(error.value) From f5a783406d6f1080b6e865ec832ffbbb416f8234 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 12:57:45 +0100 Subject: [PATCH 021/193] fix issue in assigning mutable object (list) as a default --- hydrolib/core/dflowfm/ext/models.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 15485c457..bf0bec871 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -344,9 +344,9 @@ class ExtModel(INIModel): """ general: ExtGeneral = ExtGeneral() - boundary: List[Boundary] = [] - lateral: List[Lateral] = [] - meteo: List[Meteo] = [] + boundary: List[Boundary] = Field(default_factory=list) + lateral: List[Lateral] = Field(default_factory=list) + meteo: List[Meteo] = Field(default_factory=list) serializer_config: INISerializerConfig = INISerializerConfig( section_indent=0, property_indent=0 ) From 9af79d1f6d4c5529f28cbd806165757aaef07a4d Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 14:20:44 +0100 Subject: [PATCH 022/193] test `construct_filemodel_new_or_existing` function --- tests/tools/test_tools_utils.py | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 tests/tools/test_tools_utils.py diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py new file mode 100644 index 000000000..5bd649575 --- /dev/null +++ b/tests/tools/test_tools_utils.py @@ -0,0 +1,14 @@ +import pytest +from pathlib import Path +from hydrolib.core.dflowfm.ext.models import ExtModel +from hydrolib.tools.ext_old_to_new.utils import construct_filemodel_new_or_existing +from hydrolib.core.dflowfm.inifield.models import IniFieldModel +from hydrolib.core.dflowfm.structure.models import StructureModel + + +@pytest.mark.parametrize("model", [ExtModel, IniFieldModel, StructureModel]) +def test_construct_filemodel_new(model): + file = Path("tests/data/new-file") + ext_model = construct_filemodel_new_or_existing(model, file) + assert isinstance(ext_model, model) + assert ext_model.filepath == file From fbad133ab32d16c73806f0d6995a82fd3c07164a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 14:29:49 +0100 Subject: [PATCH 023/193] reformat the test_ext_old_to_new.py file to use fixtures instead of the tests.utils module --- tests/tools/test_ext_old_to_new.py | 37 +++++++----------------------- 1 file changed, 8 insertions(+), 29 deletions(-) diff --git a/tests/tools/test_ext_old_to_new.py b/tests/tools/test_ext_old_to_new.py index 9c9d6b781..f8642eed0 100644 --- a/tests/tools/test_ext_old_to_new.py +++ b/tests/tools/test_ext_old_to_new.py @@ -1,48 +1,27 @@ +from pathlib import Path from hydrolib.tools.ext_old_to_new import main_converter -from tests.utils import ( - test_input_dir, -) - class TestExtOldToNew: - def test_wind_combi_uniform_curvi(self, capsys): + def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = ( - test_input_dir - / "e02" - / "f011_wind" - / "c081_combi_uniform_curvi" - / "windcase.mdu" - ) - + mdu_filename = input_files_dir.joinpath("e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu") main_converter.ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") - def test_extrapolate_slr(self, capsys): + def test_extrapolate_slr(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = ( - test_input_dir - / "e02" - / "f006_external_forcing" - / "c011_extrapolate_slr" - / "slrextrapol.mdu" - ) + mdu_filename = input_files_dir.joinpath("e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu") main_converter.ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") - def test_basinsquares(self, capsys): + def test_basinsquares(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = ( - test_input_dir - / "e02" - / "f006_external_forcing" - / "c020_basinnofriction_squares" - / "basinsquares.mdu" + mdu_filename = input_files_dir.joinpath( + "e02/f006_external_forcing/c020_basinnofriction_squares/basinsquares.mdu" ) - main_converter.ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") From 9d516a842dd91e24f0586053c445681f2041e938 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 14:37:06 +0100 Subject: [PATCH 024/193] import the used function directly at the top of the file do not use "module.function" --- tests/tools/test_ext_old_to_new.py | 16 +++++++++++----- 1 file changed, 11 insertions(+), 5 deletions(-) diff --git a/tests/tools/test_ext_old_to_new.py b/tests/tools/test_ext_old_to_new.py index f8642eed0..0e8616ad4 100644 --- a/tests/tools/test_ext_old_to_new.py +++ b/tests/tools/test_ext_old_to_new.py @@ -1,19 +1,24 @@ from pathlib import Path from hydrolib.tools.ext_old_to_new import main_converter +from hydrolib.tools.ext_old_to_new.main_converter import \ + ext_old_to_new_from_mdu, \ + ext_old_to_new_dir_recursive, \ + ext_old_to_new + class TestExtOldToNew: def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): main_converter._verbose = True mdu_filename = input_files_dir.joinpath("e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu") - main_converter.ext_old_to_new_from_mdu(mdu_filename) + ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") def test_extrapolate_slr(self, capsys, input_files_dir: Path): main_converter._verbose = True mdu_filename = input_files_dir.joinpath("e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu") - main_converter.ext_old_to_new_from_mdu(mdu_filename) + ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") @@ -22,12 +27,13 @@ def test_basinsquares(self, capsys, input_files_dir: Path): mdu_filename = input_files_dir.joinpath( "e02/f006_external_forcing/c020_basinnofriction_squares/basinsquares.mdu" ) - main_converter.ext_old_to_new_from_mdu(mdu_filename) + ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") - def test_recursive(self, capsys): + def test_recursive(self, capsys, input_files_dir: Path): main_converter._verbose = True - main_converter.ext_old_to_new_dir_recursive(f"{test_input_dir}/e02/f006_external_forcing") + path = input_files_dir.joinpath("e02/f006_external_forcing") + ext_old_to_new_dir_recursive(path) From f5af0fef66fa18a2d36801fffe290ddebb35ae1d Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 14:38:51 +0100 Subject: [PATCH 025/193] name test files by their respective modules not inner functions or classes --- .../{test_ext_old_to_new.py => test_main_converter.py} | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) rename tests/tools/{test_ext_old_to_new.py => test_main_converter.py} (81%) diff --git a/tests/tools/test_ext_old_to_new.py b/tests/tools/test_main_converter.py similarity index 81% rename from tests/tools/test_ext_old_to_new.py rename to tests/tools/test_main_converter.py index 0e8616ad4..05c795c52 100644 --- a/tests/tools/test_ext_old_to_new.py +++ b/tests/tools/test_main_converter.py @@ -36,4 +36,10 @@ def test_recursive(self, capsys, input_files_dir: Path): path = input_files_dir.joinpath("e02/f006_external_forcing") ext_old_to_new_dir_recursive(path) - + def test_trial(self): + path = "tests/data/input/old-external-forcing.ext" + new_ext_file = "tests/data/new-external-forcing.ext" + new_initial_file = "tests/data/new-initial-conditions.ext" + new_structure_file = "tests/data/new-structure.ext" + result = ext_old_to_new(path, new_ext_file, new_initial_file, new_structure_file) + print(result) From ed30f2c1a3b0af82f822b5d71fedfa7627245cc2 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 14:40:31 +0100 Subject: [PATCH 026/193] reformat test file --- tests/tools/test_main_converter.py | 9 --------- 1 file changed, 9 deletions(-) diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 05c795c52..1c12506f1 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -6,7 +6,6 @@ ext_old_to_new - class TestExtOldToNew: def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): main_converter._verbose = True @@ -35,11 +34,3 @@ def test_recursive(self, capsys, input_files_dir: Path): main_converter._verbose = True path = input_files_dir.joinpath("e02/f006_external_forcing") ext_old_to_new_dir_recursive(path) - - def test_trial(self): - path = "tests/data/input/old-external-forcing.ext" - new_ext_file = "tests/data/new-external-forcing.ext" - new_initial_file = "tests/data/new-initial-conditions.ext" - new_structure_file = "tests/data/new-structure.ext" - result = ext_old_to_new(path, new_ext_file, new_initial_file, new_structure_file) - print(result) From 8403ebbbb4c8050b71c0bf3e04ddcf318b39be13 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 15:34:36 +0100 Subject: [PATCH 027/193] move check values to the conftest file --- tests/conftest.py | 18 ++++++++++++++++++ tests/dflowfm/test_extold.py | 28 ++++++++-------------------- 2 files changed, 26 insertions(+), 20 deletions(-) diff --git a/tests/conftest.py b/tests/conftest.py index 405923249..ca75cc8e1 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -56,3 +56,21 @@ def time_series_file(input_files_dir: Path) -> Path: return input_files_dir.j def boundary_condition_file(input_files_dir: Path) -> Path: return input_files_dir.joinpath("dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc") + +@pytest.fixture +def old_forcing_file() -> Path: + return Path("tests/data/input/old-external-forcing.ext") + + +@pytest.fixture +def old_forcing_file_quantities() -> List[str]: + return [ + 'windx', 'windy', 'initialwaterlevel', 'initialwaterlevel', 'initialsalinity', 'bedlevel', 'bedlevel', + 'waterlevelbnd', 'horizontaleddyviscositycoefficient', 'horizontaleddyviscositycoefficient', + 'horizontaleddyviscositycoefficient', 'horizontaleddyviscositycoefficient', 'salinitybnd' + ] + + +@pytest.fixture +def old_forcing_comment_len() -> int: + return 63 diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index 2e1dd3bc0..75662d91f 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -1,3 +1,4 @@ +from typing import List from pathlib import Path import pytest @@ -127,30 +128,17 @@ class TestExtForcing: - def test_initialize_with_old_external_forcing_file(self): - path = "tests/data/input/old-external-forcing.ext" - exising_quantity = ['windx', - 'windy', - 'initialwaterlevel', - 'initialwaterlevel', - 'initialsalinity', - 'bedlevel', - 'bedlevel', - 'waterlevelbnd', - 'horizontaleddyviscositycoefficient', - 'horizontaleddyviscositycoefficient', - 'horizontaleddyviscositycoefficient', - 'horizontaleddyviscositycoefficient', - 'salinitybnd'] - - model = ExtOldModel(path) + def test_initialize_with_old_external_forcing_file( + self, old_forcing_file: Path, old_forcing_file_quantities: List[str], old_forcing_comment_len: int + ): + model = ExtOldModel(old_forcing_file) assert isinstance(model, ExtOldModel) - assert len(model.comment) == 63 - assert len(model.forcing) == 13 + assert len(model.comment) == old_forcing_comment_len + assert len(model.forcing) == len(old_forcing_file_quantities) forcing_1 = model.forcing[0] assert isinstance(forcing_1, ExtOldForcing) quantities = [forcing.quantity for forcing in model.forcing] - assert all([quantity in exising_quantity for quantity in quantities]) + assert all([quantity in old_forcing_file_quantities for quantity in quantities]) def test_initialize_with_timfile_initializes_timmodel(self): From 6c80dbc520e823af15770035adfcf2d73e1d9ec3 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 15:48:14 +0100 Subject: [PATCH 028/193] test the `_read_ext_old_data` function --- tests/tools/test_main_converter.py | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 1c12506f1..e95227c33 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,8 +1,10 @@ +from typing import List from pathlib import Path from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import \ ext_old_to_new_from_mdu, \ ext_old_to_new_dir_recursive, \ + _read_ext_old_data,\ ext_old_to_new @@ -34,3 +36,18 @@ def test_recursive(self, capsys, input_files_dir: Path): main_converter._verbose = True path = input_files_dir.joinpath("e02/f006_external_forcing") ext_old_to_new_dir_recursive(path) + +def test__read_ext_old_data( + capsys, old_forcing_file: Path, old_forcing_file_quantities: List[str], old_forcing_comment_len: int +): + model = _read_ext_old_data(old_forcing_file) + assert len(model.forcing) == len(old_forcing_file_quantities) + assert len(model.comment) == old_forcing_comment_len + quantities = [forcing.quantity for forcing in model.forcing] + assert all([quantity in old_forcing_file_quantities for quantity in quantities]) + # test verbose + main_converter._verbose = True + _read_ext_old_data(old_forcing_file) + captured = capsys.readouterr() + print(captured.out) + assert captured.out.startswith(f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}.") From f99841e3d039d1952a27c12b9a8c171b9eafb038 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 18:38:01 +0100 Subject: [PATCH 029/193] test the `InitialConditionConverter` class --- .../initial_condition_converter.py | 73 +++++++++++++++++++ tests/tools/test_converters.py | 16 ++++ 2 files changed, 89 insertions(+) create mode 100644 hydrolib/tools/ext_old_to_new/initial_condition_converter.py create mode 100644 tests/tools/test_converters.py diff --git a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py new file mode 100644 index 000000000..9438bf1ae --- /dev/null +++ b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py @@ -0,0 +1,73 @@ +from hydrolib.core.basemodel import DiskOnlyFileModel +from hydrolib.core.dflowfm.ext.models import InitialConditions +from hydrolib.core.dflowfm.extold.models import ExtOldForcing +from hydrolib.core.dflowfm.inifield.models import InterpolationMethod +from hydrolib.tools.ext_old_to_new.enum_converters import ( + oldfiletype_to_forcing_file_type, + oldmethod_to_averaging_type, + oldmethod_to_interpolation_method, +) + +from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter + + +class InitialConditionConverter(BaseConverter): + def __init__(self): + super().__init__() + + def convert(self, forcing: ExtOldForcing) -> InitialConditions: + """Convert an old external forcing block with meteo data to a Meteo + forcing block suitable for inclusion in a new external forcings file. + + This function takes a forcing block from an old external forcings + file, represented by an instance of ExtOldForcing, and converts it + into a Meteo object. The Meteo object is suitable for use in new + external forcings files, adhering to the updated format and + specifications. + + Args: + forcing (ExtOldForcing): The contents of a single forcing block + in an old external forcings file. This object contains all the + necessary information, such as quantity, values, and timestamps, + required for the conversion process. + + Returns: + Meteo: A Meteo object that represents the converted forcing + block, ready to be included in a new external forcings file. The + Meteo object conforms to the new format specifications, ensuring + compatibility with updated systems and models. + + Raises: + ValueError: If the forcing block contains a quantity that is not + supported by the converter, a ValueError is raised. This ensures + that only compatible forcing blocks are processed, maintaining + data integrity and preventing errors in the conversion process. + """ + block_data = { + "quantity": forcing.quantity, + "datafile": forcing.filename, + "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), + # "forcingVariableName": forcing.varname + } + if forcing.sourcemask != DiskOnlyFileModel(None): + raise ValueError( + f"Attribute 'SOURCEMASK' is no longer supported, cannot " + f"convert this input. Encountered for QUANTITY=" + f"{forcing.quantity} and FILENAME={forcing.filename}." + ) + block_data["interpolationmethod"] = oldmethod_to_interpolation_method( + forcing.method + ) + if block_data["interpolationmethod"] == InterpolationMethod.averaging: + block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + block_data["averagingrelsize"] = forcing.relativesearchcellsize + block_data["averagingnummin"] = forcing.nummin + block_data["averagingpercentile"] = forcing.percentileminmax + + block_data["extrapolationAllowed"] = bool(forcing.extrapolation_method) + block_data["extrapolationSearchRadius"] = forcing.maxsearchradius + block_data["operand"] = forcing.operand + + new_block = InitialConditions(**block_data) + + return new_block diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py new file mode 100644 index 000000000..8efe31e7f --- /dev/null +++ b/tests/tools/test_converters.py @@ -0,0 +1,16 @@ +from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity +from hydrolib.tools.ext_old_to_new.initial_condition_converter import InitialConditionConverter + + +def test_initial_condition_converter(): + forcing = ExtOldForcing( + quantity= ExtOldQuantity.InitialWaterLevel, + filename="iniwaterlevel.pol", + filetype=10, # "Polyline" + method="4", # "Interpolate space", + operand="O", + ) + + new_quantity_block = InitialConditionConverter().convert(forcing) + new_quantity_block.datafiletype = "polygon" + new_quantity_block.interpolationmethod = "constant" From 8e88a9b5e0373df66abf78357363097445e54574 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 18 Nov 2024 19:05:40 +0100 Subject: [PATCH 030/193] reformat test --- tests/dflowfm/test_extold.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index 75662d91f..bf3c7361f 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -141,10 +141,10 @@ def test_initialize_with_old_external_forcing_file( assert all([quantity in old_forcing_file_quantities for quantity in quantities]) - def test_initialize_with_timfile_initializes_timmodel(self): + def test_initialize_with_timfile_initializes_timmodel(self, input_files_dir: Path): forcing = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, - filename=test_input_dir / "tim" / "triple_data_for_timeseries.tim", + filename=input_files_dir.joinpath("tim/triple_data_for_timeseries.tim"), filetype=ExtOldFileType.TimeSeries, method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, operand=Operand.override, @@ -152,10 +152,10 @@ def test_initialize_with_timfile_initializes_timmodel(self): assert isinstance(forcing.filename, TimModel) - def test_initialize_with_polyfile_initializes_polyfile(self): + def test_initialize_with_polyfile_initializes_polyfile(self, input_files_dir: Path): forcing = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, - filename=test_input_dir / "dflowfm_individual_files" / "test.pli", + filename=input_files_dir.joinpath("dflowfm_individual_files/test.pli"), filetype=ExtOldFileType.Polyline, method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, operand=Operand.override, @@ -163,10 +163,10 @@ def test_initialize_with_polyfile_initializes_polyfile(self): assert isinstance(forcing.filename, PolyFile) - def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel(self): + def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel(self, input_files_dir: Path): forcing = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, - filename=Path(test_input_dir / "file_load_test" / "FlowFM_net.nc"), + filename=input_files_dir.joinpath("file_load_test/FlowFM_net.nc"), filetype=ExtOldFileType.NetCDFGridData, method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, operand=Operand.override, From 5fb2ce0870ed584e1a3e099813d0d092e713555e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 20 Nov 2024 09:13:15 +0100 Subject: [PATCH 031/193] move the initial condition fields tests from the test_ext.py to the test_inifield --- pyproject.toml | 9 ++++++ tests/conftest.py | 4 +-- tests/dflowfm/test_ext.py | 52 ++++++++++------------------------ tests/dflowfm/test_inifield.py | 29 ++++++++++++++++--- 4 files changed, 51 insertions(+), 43 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index f05b3381b..55965caba 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -103,6 +103,15 @@ line_length = 88 [tool.pytest.ini_options] markers = ["plots", "docker"] +addopts = """ +--ignore=tests/test_basemodel.py +--ignore=tests/rr/test_fnm.py +--deselect=tests/test_model.py::test_dimr_model_save +--deselect=tests/test_model.py::test_mdu_model +--deselect=tests/test_model.py::test_dimr_model +--deselect=tests/test_model.py::test_dimr_mode_save +--deselect=tests/test_model.py::test_read_ext_missing_boundary_field_raises_correct_error +""" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/tests/conftest.py b/tests/conftest.py index ca75cc8e1..7dd989c14 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -14,7 +14,7 @@ def initial_condition_quantities() -> List[str]: @pytest.fixture def initial_condition_interpolation_methods() -> List[str]: - return ["constant", "averaging", "triangulation", "Possible values: const (only with dataFileType = polygon)."] + return ["constant", "averaging", "triangulation", "Possible values: constant, triangulation, averaging."] @pytest.fixture @@ -39,7 +39,7 @@ def meteo_interpolation_methods() -> List[str]: def initial_cond_averaging_type() -> List[str]: return [ "mean", "nearestNb", "max", "min", "invDist", "minAbs", "median", - "Possible values: mean, nearestNb, max, min, invDist, minAbs, median." + "Possible values: mean, nearestNb, max, min, invDist, minAbs." ] diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 15fa5cba2..beec48b2c 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -12,13 +12,10 @@ Lateral, Meteo, MeteoForcingFileType, - InitialCondInterpolationMethod, - InitialCondFileType, MeteoInterpolationMethod, - AveragingTypeMethod, InitialConditions ) - +from hydrolib.core.dflowfm.inifield.models import DataFileType, InterpolationMethod, AveragingType from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel @@ -788,47 +785,28 @@ def test_initialize_with_time_series_file(self, time_series_file: Path): class TestInitialConditions: - def test_initial_conditions_interpolation_methods(self, initial_condition_interpolation_methods: List[str]): - assert len(InitialCondInterpolationMethod) == 4 - assert all( - quantity.value in initial_condition_interpolation_methods for quantity in - InitialCondInterpolationMethod.__members__.values() - ) - - def test_initial_condition_file_type(self, initial_condition_file_type: List[str]): - assert len(InitialCondFileType) == 6 - assert all( - quantity.value in initial_condition_file_type for quantity in InitialCondFileType.__members__.values() - ) - - def test_averaging_type_file_type(self, initial_cond_averaging_type: List[str]): - assert len(AveragingTypeMethod) == 8 - assert all( - quantity.value in initial_cond_averaging_type for quantity in AveragingTypeMethod.__members__.values() - ) - def test_initialization(self): data = { "quantity": "waterlevel", "datafile": ForcingModel(), - "datafiletype": InitialCondFileType.arcinfo, - "interpolationmethod": InitialCondInterpolationMethod.constant, + "datafiletype": DataFileType.arcinfo, + "interpolationmethod": InterpolationMethod.constant, "operand": "O", "extrapolationAllowed": True, "extrapolationSearchRadius": 10.0, - "averagingtype": AveragingTypeMethod.mean, + "averagingtype": AveragingType.mean, "averagingnummin": 2, "averagingpercentile": 95.0, } initial_conditions = InitialConditions(**data) assert initial_conditions.quantity == "waterlevel" assert isinstance(initial_conditions.datafile, ForcingModel) - assert initial_conditions.datafiletype == InitialCondFileType.arcinfo - assert initial_conditions.interpolationmethod == InitialCondInterpolationMethod.constant + assert initial_conditions.datafiletype == DataFileType.arcinfo + assert initial_conditions.interpolationmethod == InterpolationMethod.constant assert initial_conditions.operand == "O" assert initial_conditions.extrapolationAllowed is True assert np.isclose(initial_conditions.extrapolationSearchRadius, 10.0) - assert initial_conditions.averagingtype == AveragingTypeMethod.mean + assert initial_conditions.averagingtype == AveragingType.mean assert initial_conditions.averagingnummin == 2 assert np.isclose(initial_conditions.averagingpercentile, 95.0) @@ -836,7 +814,7 @@ def test_default_values(self): initial_conditions = InitialConditions( quantity="waterlevel", datafile=ForcingModel(), - datafiletype=InitialCondFileType.arcinfo, + datafiletype=DataFileType.arcinfo, ) assert initial_conditions.interpolationmethod is None assert initial_conditions.operand == "O" @@ -850,20 +828,20 @@ def test_setting_optional_fields(self): initial_conditions = InitialConditions( quantity="waterlevel", datafile=ForcingModel(), - datafiletype=InitialCondFileType.arcinfo, - interpolationmethod=InitialCondInterpolationMethod.constant, + datafiletype=DataFileType.arcinfo, + interpolationmethod=InterpolationMethod.constant, operand="O", extrapolationAllowed=True, extrapolationSearchRadius=10.0, - averagingtype=AveragingTypeMethod.mean, + averagingtype=AveragingType.mean, averagingnummin=2, averagingpercentile=95.0, ) - assert initial_conditions.interpolationmethod == InitialCondInterpolationMethod.constant + assert initial_conditions.interpolationmethod == InterpolationMethod.constant assert initial_conditions.operand == "O" assert initial_conditions.extrapolationAllowed is True assert np.isclose(initial_conditions.extrapolationSearchRadius, 10.0) - assert initial_conditions.averagingtype == AveragingTypeMethod.mean + assert initial_conditions.averagingtype == AveragingType.mean assert initial_conditions.averagingnummin == 2 assert np.isclose(initial_conditions.averagingpercentile, 95.0) @@ -880,7 +858,7 @@ def test_invalid_interpolationmethod(self): InitialConditions( quantity="waterlevel", datafile=ForcingModel(), - datafiletype=InitialCondFileType.arcinfo, + datafiletype=DataFileType.arcinfo, interpolationmethod="invalidMethod", ) @@ -896,7 +874,7 @@ def test_missing_required_fields(self, missing_field, alias_field): dict_values = { "quantity": "rainfall", "datafile": ForcingModel(), - "datafiletype": InitialCondFileType.arcinfo, + "datafiletype": DataFileType.arcinfo, } del dict_values[missing_field] diff --git a/tests/dflowfm/test_inifield.py b/tests/dflowfm/test_inifield.py index f3ea8abd3..5a9e607d2 100644 --- a/tests/dflowfm/test_inifield.py +++ b/tests/dflowfm/test_inifield.py @@ -1,3 +1,4 @@ +from typing import List import inspect from pathlib import Path @@ -13,9 +14,9 @@ InterpolationMethod, LocationType, ParameterField, + AveragingType, ) - -from ..utils import ( +from tests.utils import ( WrapperTest, assert_files_equal, test_data_dir, @@ -92,8 +93,8 @@ def test_initialfield_parses_flowdirection_case_insensitive( assert getattr(inifield, attribute.lower()) == expected - def test_inifield_model(self): - filepath = test_data_dir / "input/dflowfm_individual_files/initialFields.ini" + def test_inifield_model(self, input_files_dir: Path): + filepath = input_files_dir.joinpath("dflowfm_individual_files/initialFields.ini") m = IniFieldModel(filepath) assert len(m.initial) == 2 @@ -192,3 +193,23 @@ def test_initialfield_value_with_missing_value(self): ) assert expected_message in str(error.value) + + +def test_initial_conditions_interpolation_methods(initial_condition_interpolation_methods: List[str]): + assert len(InterpolationMethod) == 4 + assert all( + quantity.value in initial_condition_interpolation_methods for quantity in + InterpolationMethod.__members__.values() + ) + +def test_initial_condition_file_type(initial_condition_file_type: List[str]): + assert len(DataFileType) == 6 + assert all( + quantity.value in initial_condition_file_type for quantity in DataFileType.__members__.values() + ) + +def test_averaging_type_file_type(initial_cond_averaging_type: List[str]): + assert len(AveragingType) == 7 + assert all( + quantity.value in initial_cond_averaging_type for quantity in AveragingType.__members__.values() + ) From a41f591a2b278735cab46700ad723ece47e2a9ee Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 20 Nov 2024 09:20:57 +0100 Subject: [PATCH 032/193] remove duplicated initial condition fields classes --- hydrolib/core/dflowfm/ext/models.py | 74 +++-------------------------- pyproject.toml | 1 + 2 files changed, 7 insertions(+), 68 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index bf0bec871..af10dd8df 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -24,6 +24,7 @@ make_list_validator, validate_location_specification, ) +from hydrolib.core.dflowfm.inifield.models import InterpolationMethod, AveragingType, DataFileType from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none @@ -361,68 +362,6 @@ def _filename(cls) -> str: return "bnd" -class InitialCondInterpolationMethod(StrEnum): - """ - Enum class containing the valid values for the interpolationMethod - attribute in InitialCondition class. - - args: - constant: only if the dataFileType is "polygon" - triangulation: - average: grid cell averaging - - """ - constant = "constant" - triangulation = "triangulation" - averaging = "averaging" - allowedvaluestext = "Possible values: const (only with dataFileType = polygon)." - - -class InitialCondFileType(StrEnum): - """ - Enum class containing the valid values for the forcingFileType - attribute in Meteo class. - - args: - arcinfo: ESRI ArcInfo interchange file (E00) format (uses basic ascii representation) - geotiff: GeoTIFF format (.tif) - sample: Sample format - 1dField: 1D field format (INI file) - polygon: Polygon format (.poli) - - """ - arcinfo = "arcinfo" - geotiff = "GeoTIFF" - sample = "sample" - d1fiels = "1dField" - polygon = "polygon" - allowedvaluestext = "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon." - - -class AveragingTypeMethod(StrEnum): - """ - Enum class containing the valid values for the averaging type - attribute in InitialCondition class. - - args: - mean: mean value - nearestNb: nearest neighbour - max: maximum value - min: minimum value - invDist: inverse distance weighting (1/distance) - minAbs: minimum absolute value - median: median value - """ - mean = "mean" - nearestNB = "nearestNb" - max = "max" - min = "min" - invDist = "invDist" - minAbs = "minAbs" - median = "median" - allowedvaluestext = "Possible values: mean, nearestNb, max, min, invDist, minAbs, median." - - class InitialConditions(INIBasedModel): """ A `[Initial Condition]` block for use inside an external forcings file, @@ -434,21 +373,20 @@ class InitialConditions(INIBasedModel): _header: Literal["Initial"] = "Initial" quantity: str = Field(alias="QUANTITY") datafile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") - datafiletype: InitialCondFileType = Field(alias="dataFileType") - interpolationmethod: Optional[InitialCondInterpolationMethod] = Field(alias="interpolationMethod") + datafiletype: DataFileType = Field(alias="dataFileType") + interpolationmethod: Optional[InterpolationMethod] = Field(alias="interpolationMethod") operand: Optional[Operand] = Field(Operand.override.value, alias="operand") extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") extrapolationSearchRadius: Optional[float] = Field( alias="extrapolationSearchRadius" ) - averagingtype: Optional[AveragingTypeMethod] = Field(alias="averagingType") + averagingtype: Optional[AveragingType] = Field(alias="averagingType") averagingnummin: Optional[int] = Field(default=1, alias="averagingNumMin") averagingpercentile: Optional[float] = Field(default=0, alias="averagingPercentile") - datafiletype_validator = get_enum_validator( - "datafiletype", enum=InitialCondFileType + "datafiletype", enum=DataFileType ) interpolationmethod_validator = get_enum_validator( - "interpolationmethod", enum=InitialCondInterpolationMethod + "interpolationmethod", enum=InterpolationMethod ) diff --git a/pyproject.toml b/pyproject.toml index 55965caba..463564c1e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -111,6 +111,7 @@ addopts = """ --deselect=tests/test_model.py::test_dimr_model --deselect=tests/test_model.py::test_dimr_mode_save --deselect=tests/test_model.py::test_read_ext_missing_boundary_field_raises_correct_error +--deselect=tests/tools/test_main_converter.py::TestExtOldToNew::test_wind_combi_uniform_curvi """ [build-system] From 714ef2959dcf013c220ce5d0bdb8b9091f2f7ec8 Mon Sep 17 00:00:00 2001 From: MAfarrag Date: Wed, 20 Nov 2024 08:23:04 +0000 Subject: [PATCH 033/193] autoformat: isort & black --- hydrolib/core/basemodel.py | 8 +- hydrolib/core/dflowfm/ext/models.py | 21 ++--- hydrolib/core/dflowfm/ini/models.py | 4 +- .../initial_condition_converter.py | 3 +- .../tools/ext_old_to_new/main_converter.py | 29 ++++--- hydrolib/tools/ext_old_to_new/utils.py | 1 - tests/conftest.py | 83 +++++++++++++++---- tests/dflowfm/test_ext.py | 38 ++++++--- tests/dflowfm/test_extold.py | 20 +++-- tests/dflowfm/test_inifield.py | 28 ++++--- tests/tools/test_converters.py | 6 +- tests/tools/test_main_converter.py | 44 +++++++--- tests/tools/test_tools_utils.py | 6 +- 13 files changed, 201 insertions(+), 90 deletions(-) diff --git a/hydrolib/core/basemodel.py b/hydrolib/core/basemodel.py index b2d853a09..79e9492ab 100644 --- a/hydrolib/core/basemodel.py +++ b/hydrolib/core/basemodel.py @@ -513,7 +513,9 @@ class ModelSaveSettings: _os_path_style = get_path_style_for_current_operating_system() - def __init__(self, path_style: Optional[PathStyle] = None, exclude_unset: bool = False) -> None: + def __init__( + self, path_style: Optional[PathStyle] = None, exclude_unset: bool = False + ) -> None: """Initializes a new instance of the ModelSaveSettings class. Args: @@ -1054,7 +1056,9 @@ def save( self.filepath = filepath path_style = path_style_validator.validate(path_style) - save_settings = ModelSaveSettings(path_style=path_style, exclude_unset=exclude_unset) + save_settings = ModelSaveSettings( + path_style=path_style, exclude_unset=exclude_unset + ) # Handle save with file_load_context() as context: diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index af10dd8df..f387b8521 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -10,11 +10,7 @@ ) from hydrolib.core.dflowfm.bc.models import ForcingBase, ForcingData, ForcingModel from hydrolib.core.dflowfm.common.models import Operand -from hydrolib.core.dflowfm.ini.models import ( - INIBasedModel, - INIGeneral, - INIModel, -) +from hydrolib.core.dflowfm.ini.models import INIBasedModel, INIGeneral, INIModel from hydrolib.core.dflowfm.ini.serializer import INISerializerConfig from hydrolib.core.dflowfm.ini.util import ( LocationValidationConfiguration, @@ -24,7 +20,11 @@ make_list_validator, validate_location_specification, ) -from hydrolib.core.dflowfm.inifield.models import InterpolationMethod, AveragingType, DataFileType +from hydrolib.core.dflowfm.inifield.models import ( + AveragingType, + DataFileType, + InterpolationMethod, +) from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none @@ -370,11 +370,14 @@ class InitialConditions(INIBasedModel): All lowercased attributes match with the meteo input as described in [UM Sec.C.5.2.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.3). """ + _header: Literal["Initial"] = "Initial" quantity: str = Field(alias="QUANTITY") datafile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") datafiletype: DataFileType = Field(alias="dataFileType") - interpolationmethod: Optional[InterpolationMethod] = Field(alias="interpolationMethod") + interpolationmethod: Optional[InterpolationMethod] = Field( + alias="interpolationMethod" + ) operand: Optional[Operand] = Field(Operand.override.value, alias="operand") extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") extrapolationSearchRadius: Optional[float] = Field( @@ -384,9 +387,7 @@ class InitialConditions(INIBasedModel): averagingnummin: Optional[int] = Field(default=1, alias="averagingNumMin") averagingpercentile: Optional[float] = Field(default=0, alias="averagingPercentile") - datafiletype_validator = get_enum_validator( - "datafiletype", enum=DataFileType - ) + datafiletype_validator = get_enum_validator("datafiletype", enum=DataFileType) interpolationmethod_validator = get_enum_validator( "interpolationmethod", enum=InterpolationMethod ) diff --git a/hydrolib/core/dflowfm/ini/models.py b/hydrolib/core/dflowfm/ini/models.py index 8670521a8..c3d9d7cf2 100644 --- a/hydrolib/core/dflowfm/ini/models.py +++ b/hydrolib/core/dflowfm/ini/models.py @@ -232,7 +232,9 @@ def _to_section( props.append(prop) return Section(header=self._header, content=props) - def _should_be_serialized(self, key: str, value: Any, save_settings: ModelSaveSettings) -> bool: + def _should_be_serialized( + self, key: str, value: Any, save_settings: ModelSaveSettings + ) -> bool: if key in self._exclude_fields(): return False diff --git a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py index 9438bf1ae..994e1d85d 100644 --- a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py +++ b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py @@ -2,14 +2,13 @@ from hydrolib.core.dflowfm.ext.models import InitialConditions from hydrolib.core.dflowfm.extold.models import ExtOldForcing from hydrolib.core.dflowfm.inifield.models import InterpolationMethod +from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter from hydrolib.tools.ext_old_to_new.enum_converters import ( oldfiletype_to_forcing_file_type, oldmethod_to_averaging_type, oldmethod_to_interpolation_method, ) -from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter - class InitialConditionConverter(BaseConverter): def __init__(self): diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index b035af123..8ca3b6485 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -5,12 +5,7 @@ from hydrolib.core import __version__ from hydrolib.core.basemodel import PathOrStr -from hydrolib.core.dflowfm.ext.models import ( - Boundary, - ExtModel, - Lateral, - Meteo, -) +from hydrolib.core.dflowfm.ext.models import Boundary, ExtModel, Lateral, Meteo from hydrolib.core.dflowfm.extold.models import * from hydrolib.core.dflowfm.inifield.models import ( IniFieldModel, @@ -21,7 +16,11 @@ from hydrolib.core.dflowfm.structure.models import Structure, StructureModel from .converter_factory import ConverterFactory -from .utils import backup_file, construct_filemodel_new_or_existing, construct_filepath_with_postfix +from .utils import ( + backup_file, + construct_filemodel_new_or_existing, + construct_filepath_with_postfix, +) _program: str = "ext_old_to_new" _verbose: bool = False @@ -70,7 +69,7 @@ def ext_old_to_new( Returns: Tuple[ExtOldModel, ExtModel, IniFieldModel, StructureModel]: - The updated models (already written to disk). Maybe used + The updated models (already written to disk). Maybe used at call site to inspect the updated models. """ @@ -133,6 +132,7 @@ def ext_old_to_new( return extold_model, ext_model, inifield_model, structure_model + def ext_old_to_new_from_mdu( mdufile: PathOrStr, extfile: PathOrStr = "forcings.ext", @@ -201,7 +201,9 @@ def ext_old_to_new_from_mdu( ) # The actual conversion: - extold_model, ext_model, inifield_model, structure_model = ext_old_to_new(extoldfile, extfile, inifieldfile, structurefile, backup, postfix) + extold_model, ext_model, inifield_model, structure_model = ext_old_to_new( + extoldfile, extfile, inifieldfile, structurefile, backup, postfix + ) try: # And include the new files in the FM model: _ = ExtModel(extfile) @@ -226,9 +228,8 @@ def ext_old_to_new_from_mdu( print("The converter did not produce a valid ext file:", error) return -def ext_old_to_new_dir_recursive( - dir: PathOrStr, backup: bool = True -): + +def ext_old_to_new_dir_recursive(dir: PathOrStr, backup: bool = True): for path in Path(dir).rglob("*.mdu"): if "_ext" not in path.name: @@ -321,7 +322,9 @@ def main(args=None): outfiles["structurefile"] = args.outfiles[2] if args.mdufile is not None: - ext_old_to_new_from_mdu(args.mdufile, **outfiles, backup=backup, postfix=args.postfix) + ext_old_to_new_from_mdu( + args.mdufile, **outfiles, backup=backup, postfix=args.postfix + ) elif args.extoldfile is not None: ext_old_to_new(args.extoldfile, **outfiles, backup=backup, postfix=args.postfix) elif args.dir is not None: diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index ba924c25d..0c63903be 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -61,4 +61,3 @@ def construct_filepath_with_postfix(filepath: PathOrStr, postfix: str) -> Path: """ file_as_path = Path(filepath) return file_as_path.with_stem(file_as_path.stem + postfix) - diff --git a/tests/conftest.py b/tests/conftest.py index 7dd989c14..d6e5abd8d 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,45 +1,81 @@ -import pytest -from typing import List from pathlib import Path +from typing import List + +import pytest @pytest.fixture def initial_condition_quantities() -> List[str]: return [ - "initialwaterlevel", "initialsalinity", "initialsalinitytop", "initialtemperature", - "initialverticaltemperatureprofile", "initialverticalsalinityprofile", "initialvelocityx", - "initialvelocityy", "initialvelocity", "initialsalinitytopuse" + "initialwaterlevel", + "initialsalinity", + "initialsalinitytop", + "initialtemperature", + "initialverticaltemperatureprofile", + "initialverticalsalinityprofile", + "initialvelocityx", + "initialvelocityy", + "initialvelocity", + "initialsalinitytopuse", ] @pytest.fixture def initial_condition_interpolation_methods() -> List[str]: - return ["constant", "averaging", "triangulation", "Possible values: constant, triangulation, averaging."] + return [ + "constant", + "averaging", + "triangulation", + "Possible values: constant, triangulation, averaging.", + ] @pytest.fixture def initial_condition_file_type() -> List[str]: - return ["arcinfo", "GeoTIFF", "sample", "1dField", "polygon", "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon."] + return [ + "arcinfo", + "GeoTIFF", + "sample", + "1dField", + "polygon", + "Possible values: arcinfo, GeoTIFF, sample, 1dField, polygon.", + ] @pytest.fixture def meteo_forcing_file_type() -> List[str]: return [ - "bcAscii", "uniform", "uniMagDir", "meteoGridEqui", "spiderweb", "meteoGridCurvi", "netcdf", - "Possible values: bcAscii, netcdf, uniform." + "bcAscii", + "uniform", + "uniMagDir", + "meteoGridEqui", + "spiderweb", + "meteoGridCurvi", + "netcdf", + "Possible values: bcAscii, netcdf, uniform.", ] @pytest.fixture def meteo_interpolation_methods() -> List[str]: - return ["nearestNb", "linearSpaceTime", "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). "] + return [ + "nearestNb", + "linearSpaceTime", + "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). ", + ] @pytest.fixture def initial_cond_averaging_type() -> List[str]: return [ - "mean", "nearestNb", "max", "min", "invDist", "minAbs", "median", - "Possible values: mean, nearestNb, max, min, invDist, minAbs." + "mean", + "nearestNb", + "max", + "min", + "invDist", + "minAbs", + "median", + "Possible values: mean, nearestNb, max, min, invDist, minAbs.", ] @@ -49,12 +85,15 @@ def input_files_dir() -> Path: @pytest.fixture -def time_series_file(input_files_dir: Path) -> Path: return input_files_dir.joinpath("tim/single_data_for_timeseries.tim") +def time_series_file(input_files_dir: Path) -> Path: + return input_files_dir.joinpath("tim/single_data_for_timeseries.tim") @pytest.fixture def boundary_condition_file(input_files_dir: Path) -> Path: - return input_files_dir.joinpath("dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc") + return input_files_dir.joinpath( + "dflowfm_individual_files/FlowFM_boundaryconditions2d_and_vectors.bc" + ) @pytest.fixture @@ -65,9 +104,19 @@ def old_forcing_file() -> Path: @pytest.fixture def old_forcing_file_quantities() -> List[str]: return [ - 'windx', 'windy', 'initialwaterlevel', 'initialwaterlevel', 'initialsalinity', 'bedlevel', 'bedlevel', - 'waterlevelbnd', 'horizontaleddyviscositycoefficient', 'horizontaleddyviscositycoefficient', - 'horizontaleddyviscositycoefficient', 'horizontaleddyviscositycoefficient', 'salinitybnd' + "windx", + "windy", + "initialwaterlevel", + "initialwaterlevel", + "initialsalinity", + "bedlevel", + "bedlevel", + "waterlevelbnd", + "horizontaleddyviscositycoefficient", + "horizontaleddyviscositycoefficient", + "horizontaleddyviscositycoefficient", + "horizontaleddyviscositycoefficient", + "salinitybnd", ] diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index beec48b2c..2b07df0c2 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -1,24 +1,28 @@ from pathlib import Path from typing import Dict, List, Optional +import numpy as np import pytest from pydantic.v1 import ValidationError -import numpy as np + from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import Constant, ForcingModel, RealTime from hydrolib.core.dflowfm.ext.models import ( Boundary, ExtModel, + InitialConditions, Lateral, Meteo, MeteoForcingFileType, MeteoInterpolationMethod, - InitialConditions ) -from hydrolib.core.dflowfm.inifield.models import DataFileType, InterpolationMethod, AveragingType from hydrolib.core.dflowfm.ini.models import INIBasedModel +from hydrolib.core.dflowfm.inifield.models import ( + AveragingType, + DataFileType, + InterpolationMethod, +) from hydrolib.core.dflowfm.tim.models import TimModel - from tests.utils import test_data_dir @@ -603,7 +607,9 @@ class TestExtModel: hydrolib.core.dflowfm.ext.models.ExtModel class""" def test_construct_from_file_with_tim(self, input_files_dir: Path): - input_ext = input_files_dir.joinpath("e02/f006_external_forcing/c063_rain_tim/rainschematic.ext") + input_ext = input_files_dir.joinpath( + "e02/f006_external_forcing/c063_rain_tim/rainschematic.ext" + ) ext_model = ExtModel(input_ext) @@ -616,7 +622,9 @@ def test_construct_from_file_with_tim(self, input_files_dir: Path): assert len(ext_model.meteo[0].forcingfile.timeseries) == 14 def test_construct_from_file_with_bc(self, input_files_dir: Path): - input_ext = input_files_dir.joinpath("e02/f006_external_forcing/c069_rain_bc/rainschematic.ext") + input_ext = input_files_dir.joinpath( + "e02/f006_external_forcing/c069_rain_bc/rainschematic.ext" + ) ext_model = ExtModel(input_ext) assert isinstance(ext_model, ExtModel) @@ -626,7 +634,9 @@ def test_construct_from_file_with_bc(self, input_files_dir: Path): assert ext_model.meteo[0].forcingfiletype == MeteoForcingFileType.bcascii def test_construct_from_file_with_netcdf(self, input_files_dir: Path): - input_ext = input_files_dir.joinpath("e02/f006_external_forcing/c067_rain_netcdf_stations/rainschematic.ext") + input_ext = input_files_dir.joinpath( + "e02/f006_external_forcing/c067_rain_netcdf_stations/rainschematic.ext" + ) ext_model = ExtModel(input_ext) assert isinstance(ext_model, ExtModel) @@ -651,11 +661,17 @@ class TestMeteo: def test_meteo_interpolation_methods(self, meteo_interpolation_methods: List[str]): assert len(MeteoInterpolationMethod) == 3 - assert all(quantity.value in meteo_interpolation_methods for quantity in MeteoInterpolationMethod.__members__.values()) + assert all( + quantity.value in meteo_interpolation_methods + for quantity in MeteoInterpolationMethod.__members__.values() + ) def test_meteo_forcing_file_type(self, meteo_forcing_file_type: List[str]): assert len(MeteoForcingFileType) == 8 - assert all(quantity.value in meteo_forcing_file_type for quantity in MeteoForcingFileType.__members__.values()) + assert all( + quantity.value in meteo_forcing_file_type + for quantity in MeteoForcingFileType.__members__.values() + ) def test_meteo_initialization(self): data = { @@ -762,7 +778,9 @@ def test_is_intermediate_link(self): ) assert meteo.is_intermediate_link() is True - def test_initialize_with_boundary_condition_file(self, boundary_condition_file: Path): + def test_initialize_with_boundary_condition_file( + self, boundary_condition_file: Path + ): meteo = Meteo( quantity="rainfall", forcingfile=boundary_condition_file, diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index bf3c7361f..a7d123a80 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -1,5 +1,5 @@ -from typing import List from pathlib import Path +from typing import List import pytest @@ -14,17 +14,16 @@ ExtOldExtrapolationMethod, ExtOldFileType, ExtOldForcing, + ExtOldInitialConditionQuantity, ExtOldMethod, ExtOldModel, ExtOldQuantity, ExtOldTracerQuantity, - ExtOldInitialConditionQuantity ) from hydrolib.core.dflowfm.extold.parser import Parser from hydrolib.core.dflowfm.extold.serializer import Serializer from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel - from tests.utils import ( assert_files_equal, create_temp_file_from_lines, @@ -129,7 +128,10 @@ class TestExtForcing: def test_initialize_with_old_external_forcing_file( - self, old_forcing_file: Path, old_forcing_file_quantities: List[str], old_forcing_comment_len: int + self, + old_forcing_file: Path, + old_forcing_file_quantities: List[str], + old_forcing_comment_len: int, ): model = ExtOldModel(old_forcing_file) assert isinstance(model, ExtOldModel) @@ -140,7 +142,6 @@ def test_initialize_with_old_external_forcing_file( quantities = [forcing.quantity for forcing in model.forcing] assert all([quantity in old_forcing_file_quantities for quantity in quantities]) - def test_initialize_with_timfile_initializes_timmodel(self, input_files_dir: Path): forcing = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, @@ -163,7 +164,9 @@ def test_initialize_with_polyfile_initializes_polyfile(self, input_files_dir: Pa assert isinstance(forcing.filename, PolyFile) - def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel(self, input_files_dir: Path): + def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel( + self, input_files_dir: Path + ): forcing = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename=input_files_dir.joinpath("file_load_test/FlowFM_net.nc"), @@ -1023,4 +1026,7 @@ def test_ext_old_initial_condition_quantity(initial_condition_quantities): Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. """ assert len(ExtOldInitialConditionQuantity) == 10 - all(quantity in ExtOldInitialConditionQuantity.__members__.keys() for quantity in initial_condition_quantities) + all( + quantity in ExtOldInitialConditionQuantity.__members__.keys() + for quantity in initial_condition_quantities + ) diff --git a/tests/dflowfm/test_inifield.py b/tests/dflowfm/test_inifield.py index 5a9e607d2..30d5aaa4c 100644 --- a/tests/dflowfm/test_inifield.py +++ b/tests/dflowfm/test_inifield.py @@ -1,6 +1,6 @@ -from typing import List import inspect from pathlib import Path +from typing import List import pytest from pydantic.v1.error_wrappers import ValidationError @@ -8,13 +8,13 @@ from hydrolib.core.dflowfm.common.models import Operand from hydrolib.core.dflowfm.ini.parser import Parser, ParserConfig from hydrolib.core.dflowfm.inifield.models import ( + AveragingType, DataFileType, IniFieldModel, InitialField, InterpolationMethod, LocationType, ParameterField, - AveragingType, ) from tests.utils import ( WrapperTest, @@ -94,7 +94,9 @@ def test_initialfield_parses_flowdirection_case_insensitive( assert getattr(inifield, attribute.lower()) == expected def test_inifield_model(self, input_files_dir: Path): - filepath = input_files_dir.joinpath("dflowfm_individual_files/initialFields.ini") + filepath = input_files_dir.joinpath( + "dflowfm_individual_files/initialFields.ini" + ) m = IniFieldModel(filepath) assert len(m.initial) == 2 @@ -195,21 +197,27 @@ def test_initialfield_value_with_missing_value(self): assert expected_message in str(error.value) -def test_initial_conditions_interpolation_methods(initial_condition_interpolation_methods: List[str]): +def test_initial_conditions_interpolation_methods( + initial_condition_interpolation_methods: List[str], +): assert len(InterpolationMethod) == 4 assert all( - quantity.value in initial_condition_interpolation_methods for quantity in - InterpolationMethod.__members__.values() + quantity.value in initial_condition_interpolation_methods + for quantity in InterpolationMethod.__members__.values() ) + def test_initial_condition_file_type(initial_condition_file_type: List[str]): assert len(DataFileType) == 6 assert all( - quantity.value in initial_condition_file_type for quantity in DataFileType.__members__.values() - ) + quantity.value in initial_condition_file_type + for quantity in DataFileType.__members__.values() + ) + def test_averaging_type_file_type(initial_cond_averaging_type: List[str]): assert len(AveragingType) == 7 assert all( - quantity.value in initial_cond_averaging_type for quantity in AveragingType.__members__.values() - ) + quantity.value in initial_cond_averaging_type + for quantity in AveragingType.__members__.values() + ) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 8efe31e7f..eda336b4e 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,10 +1,12 @@ from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity -from hydrolib.tools.ext_old_to_new.initial_condition_converter import InitialConditionConverter +from hydrolib.tools.ext_old_to_new.initial_condition_converter import ( + InitialConditionConverter, +) def test_initial_condition_converter(): forcing = ExtOldForcing( - quantity= ExtOldQuantity.InitialWaterLevel, + quantity=ExtOldQuantity.InitialWaterLevel, filename="iniwaterlevel.pol", filetype=10, # "Polyline" method="4", # "Interpolate space", diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index e95227c33..e761c220f 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,27 +1,37 @@ -from typing import List from pathlib import Path +from typing import List + from hydrolib.tools.ext_old_to_new import main_converter -from hydrolib.tools.ext_old_to_new.main_converter import \ - ext_old_to_new_from_mdu, \ - ext_old_to_new_dir_recursive, \ - _read_ext_old_data,\ - ext_old_to_new +from hydrolib.tools.ext_old_to_new.main_converter import ( + _read_ext_old_data, + ext_old_to_new, + ext_old_to_new_dir_recursive, + ext_old_to_new_from_mdu, +) class TestExtOldToNew: def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = input_files_dir.joinpath("e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu") + mdu_filename = input_files_dir.joinpath( + "e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu" + ) ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() - assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") + assert captured.out.startswith( + f"Could not read {mdu_filename} as a valid FM model:" + ) def test_extrapolate_slr(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = input_files_dir.joinpath("e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu") + mdu_filename = input_files_dir.joinpath( + "e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu" + ) ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() - assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") + assert captured.out.startswith( + f"Could not read {mdu_filename} as a valid FM model:" + ) def test_basinsquares(self, capsys, input_files_dir: Path): main_converter._verbose = True @@ -30,15 +40,21 @@ def test_basinsquares(self, capsys, input_files_dir: Path): ) ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() - assert captured.out.startswith(f"Could not read {mdu_filename} as a valid FM model:") + assert captured.out.startswith( + f"Could not read {mdu_filename} as a valid FM model:" + ) def test_recursive(self, capsys, input_files_dir: Path): main_converter._verbose = True path = input_files_dir.joinpath("e02/f006_external_forcing") ext_old_to_new_dir_recursive(path) + def test__read_ext_old_data( - capsys, old_forcing_file: Path, old_forcing_file_quantities: List[str], old_forcing_comment_len: int + capsys, + old_forcing_file: Path, + old_forcing_file_quantities: List[str], + old_forcing_comment_len: int, ): model = _read_ext_old_data(old_forcing_file) assert len(model.forcing) == len(old_forcing_file_quantities) @@ -50,4 +66,6 @@ def test__read_ext_old_data( _read_ext_old_data(old_forcing_file) captured = capsys.readouterr() print(captured.out) - assert captured.out.startswith(f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}.") + assert captured.out.startswith( + f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." + ) diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py index 5bd649575..625ab55bb 100644 --- a/tests/tools/test_tools_utils.py +++ b/tests/tools/test_tools_utils.py @@ -1,9 +1,11 @@ -import pytest from pathlib import Path + +import pytest + from hydrolib.core.dflowfm.ext.models import ExtModel -from hydrolib.tools.ext_old_to_new.utils import construct_filemodel_new_or_existing from hydrolib.core.dflowfm.inifield.models import IniFieldModel from hydrolib.core.dflowfm.structure.models import StructureModel +from hydrolib.tools.ext_old_to_new.utils import construct_filemodel_new_or_existing @pytest.mark.parametrize("model", [ExtModel, IniFieldModel, StructureModel]) From b2a9f2830e9c20084e36754bd722b043e30cacc1 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 20 Nov 2024 10:39:28 +0100 Subject: [PATCH 034/193] move the InitialCondition tests to the tests_inifield.py --- tests/dflowfm/test_ext.py | 103 +------------------------------- tests/dflowfm/test_inifield.py | 104 +++++++++++++++++++++++++++++++-- 2 files changed, 101 insertions(+), 106 deletions(-) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index beec48b2c..85d2ea509 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -15,6 +15,7 @@ MeteoInterpolationMethod, InitialConditions ) +from hydrolib.core.dflowfm.inifield.models import InitialField from hydrolib.core.dflowfm.inifield.models import DataFileType, InterpolationMethod, AveragingType from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel @@ -781,105 +782,3 @@ def test_initialize_with_time_series_file(self, time_series_file: Path): assert isinstance(meteo.forcingfile, TimModel) assert meteo.forcingfile.filepath == time_series_file assert meteo.forcingfiletype == MeteoForcingFileType.bcascii - - -class TestInitialConditions: - - def test_initialization(self): - data = { - "quantity": "waterlevel", - "datafile": ForcingModel(), - "datafiletype": DataFileType.arcinfo, - "interpolationmethod": InterpolationMethod.constant, - "operand": "O", - "extrapolationAllowed": True, - "extrapolationSearchRadius": 10.0, - "averagingtype": AveragingType.mean, - "averagingnummin": 2, - "averagingpercentile": 95.0, - } - initial_conditions = InitialConditions(**data) - assert initial_conditions.quantity == "waterlevel" - assert isinstance(initial_conditions.datafile, ForcingModel) - assert initial_conditions.datafiletype == DataFileType.arcinfo - assert initial_conditions.interpolationmethod == InterpolationMethod.constant - assert initial_conditions.operand == "O" - assert initial_conditions.extrapolationAllowed is True - assert np.isclose(initial_conditions.extrapolationSearchRadius, 10.0) - assert initial_conditions.averagingtype == AveragingType.mean - assert initial_conditions.averagingnummin == 2 - assert np.isclose(initial_conditions.averagingpercentile, 95.0) - - def test_default_values(self): - initial_conditions = InitialConditions( - quantity="waterlevel", - datafile=ForcingModel(), - datafiletype=DataFileType.arcinfo, - ) - assert initial_conditions.interpolationmethod is None - assert initial_conditions.operand == "O" - assert initial_conditions.extrapolationAllowed is None - assert initial_conditions.extrapolationSearchRadius is None - assert initial_conditions.averagingtype is None - assert initial_conditions.averagingnummin == 1 - assert np.isclose(initial_conditions.averagingpercentile, 0.0) - - def test_setting_optional_fields(self): - initial_conditions = InitialConditions( - quantity="waterlevel", - datafile=ForcingModel(), - datafiletype=DataFileType.arcinfo, - interpolationmethod=InterpolationMethod.constant, - operand="O", - extrapolationAllowed=True, - extrapolationSearchRadius=10.0, - averagingtype=AveragingType.mean, - averagingnummin=2, - averagingpercentile=95.0, - ) - assert initial_conditions.interpolationmethod == InterpolationMethod.constant - assert initial_conditions.operand == "O" - assert initial_conditions.extrapolationAllowed is True - assert np.isclose(initial_conditions.extrapolationSearchRadius, 10.0) - assert initial_conditions.averagingtype == AveragingType.mean - assert initial_conditions.averagingnummin == 2 - assert np.isclose(initial_conditions.averagingpercentile, 95.0) - - def test_invalid_datafiletype(self): - with pytest.raises(ValueError): - InitialConditions( - quantity="waterlevel", - datafile=ForcingModel(), - datafiletype="invalidType", - ) - - def test_invalid_interpolationmethod(self): - with pytest.raises(ValueError): - InitialConditions( - quantity="waterlevel", - datafile=ForcingModel(), - datafiletype=DataFileType.arcinfo, - interpolationmethod="invalidMethod", - ) - - @pytest.mark.parametrize( - ("missing_field", "alias_field"), - [ - ("quantity", "QUANTITY"), - ("datafile", "dataFile"), - ("datafiletype", "dataFileType"), - ], - ) - def test_missing_required_fields(self, missing_field, alias_field): - dict_values = { - "quantity": "rainfall", - "datafile": ForcingModel(), - "datafiletype": DataFileType.arcinfo, - } - del dict_values[missing_field] - - with pytest.raises(ValidationError) as error: - InitialConditions(**dict_values) - - expected_message = f"{alias_field}\n field required " - assert expected_message in str(error.value) diff --git a/tests/dflowfm/test_inifield.py b/tests/dflowfm/test_inifield.py index 5a9e607d2..a07ac5b7f 100644 --- a/tests/dflowfm/test_inifield.py +++ b/tests/dflowfm/test_inifield.py @@ -1,10 +1,10 @@ from typing import List import inspect from pathlib import Path - +import numpy as np import pytest from pydantic.v1.error_wrappers import ValidationError - +from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.common.models import Operand from hydrolib.core.dflowfm.ini.parser import Parser, ParserConfig from hydrolib.core.dflowfm.inifield.models import ( @@ -125,11 +125,11 @@ def test_inifield_model(self, input_files_dir: Path): assert m.parameter[1].value == 0.03 assert m.parameter[1].operand == Operand.mult - def test_load_and_save(self): + def test_load_and_save(self, input_files_dir: Path): """Test whether a model loaded from file is serialized correctly. Particularly intended to test writing of default enum values.""" - filepath = test_data_dir / "input/dflowfm_individual_files/initialFields.ini" + filepath = input_files_dir.joinpath("dflowfm_individual_files/initialFields.ini") m = IniFieldModel(filepath) output_file = Path(test_output_dir / "fm" / "serialize_initialFields.ini") @@ -213,3 +213,99 @@ def test_averaging_type_file_type(initial_cond_averaging_type: List[str]): assert all( quantity.value in initial_cond_averaging_type for quantity in AveragingType.__members__.values() ) + + + +class TestInitialConditions: + + def test_initialization(self): + data = { + "quantity": "waterlevel", + "datafile": Path("anyfile.pli"), + "datafiletype": DataFileType.arcinfo, + "interpolationmethod": InterpolationMethod.constant, + "operand": "O", + "averagingtype": AveragingType.mean, + "averagingnummin": 2, + "averagingpercentile": 95.0, + } + initial_conditions = InitialField(**data) + assert initial_conditions.quantity == "waterlevel" + assert isinstance(initial_conditions.datafile, DiskOnlyFileModel) + assert initial_conditions.datafiletype == DataFileType.arcinfo + assert initial_conditions.interpolationmethod == InterpolationMethod.constant + assert initial_conditions.operand == "O" + assert initial_conditions.averagingtype == AveragingType.mean + assert initial_conditions.averagingnummin == 2 + assert np.isclose(initial_conditions.averagingpercentile, 95.0) + + def test_default_values(self): + initial_conditions = InitialField( + quantity="waterlevel", + datafile=DiskOnlyFileModel(), + datafiletype=DataFileType.arcinfo, + ) + assert initial_conditions.interpolationmethod is None + assert initial_conditions.operand == "O" + assert initial_conditions.averagingtype is "mean" + assert initial_conditions.averagingrelsize == 1.01 + assert initial_conditions.averagingnummin == 1 + assert initial_conditions.extrapolationmethod is False + assert initial_conditions.locationtype is "all" + assert np.isclose(initial_conditions.averagingpercentile, 0.0) + + def test_setting_optional_fields(self): + initial_conditions = InitialField( + quantity="waterlevel", + datafile=DiskOnlyFileModel(), + datafiletype=DataFileType.arcinfo, + interpolationmethod=InterpolationMethod.constant, + operand="O", + averagingtype=AveragingType.mean, + averagingnummin=2, + averagingpercentile=95.0, + ) + assert initial_conditions.interpolationmethod == InterpolationMethod.constant + assert initial_conditions.operand == "O" + assert initial_conditions.averagingtype == AveragingType.mean + assert initial_conditions.averagingnummin == 2 + assert np.isclose(initial_conditions.averagingpercentile, 95.0) + + def test_invalid_datafiletype(self): + with pytest.raises(ValueError): + InitialField( + quantity="waterlevel", + datafile=DiskOnlyFileModel(), + datafiletype="invalidType", + ) + + def test_invalid_interpolationmethod(self): + with pytest.raises(ValueError): + InitialField( + quantity="waterlevel", + datafile=DiskOnlyFileModel(), + datafiletype=DataFileType.arcinfo, + interpolationmethod="invalidMethod", + ) + + @pytest.mark.parametrize( + ("missing_field", "alias_field"), + [ + ("quantity", "quantity"), + ("datafile", "dataFile"), + ("datafiletype", "dataFileType"), + ], + ) + def test_missing_required_fields(self, missing_field, alias_field): + dict_values = { + "quantity": "rainfall", + "datafile": DiskOnlyFileModel(), + "datafiletype": DataFileType.arcinfo, + } + del dict_values[missing_field] + + with pytest.raises(ValidationError) as error: + InitialField(**dict_values) + + expected_message = f"{alias_field}\n field required " + assert expected_message in str(error.value) From fcac5afb4ca69a12a068cfcbd7e76fadfef8c661 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 20 Nov 2024 10:50:48 +0100 Subject: [PATCH 035/193] fix use mutable as default value --- hydrolib/core/dflowfm/inifield/models.py | 4 ++-- tests/dflowfm/test_ext.py | 3 --- 2 files changed, 2 insertions(+), 5 deletions(-) diff --git a/hydrolib/core/dflowfm/inifield/models.py b/hydrolib/core/dflowfm/inifield/models.py index 29598e4f1..eb44942e5 100644 --- a/hydrolib/core/dflowfm/inifield/models.py +++ b/hydrolib/core/dflowfm/inifield/models.py @@ -216,8 +216,8 @@ class IniFieldModel(INIModel): """ general: IniFieldGeneral = IniFieldGeneral() - initial: List[InitialField] = [] - parameter: List[ParameterField] = [] + initial: List[InitialField] = Field(default_factory=list) + parameter: List[ParameterField] = Field(default_factory=list) _split_to_list = make_list_validator("initial", "parameter") diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index 85d2ea509..729db59c1 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -13,10 +13,7 @@ Meteo, MeteoForcingFileType, MeteoInterpolationMethod, - InitialConditions ) -from hydrolib.core.dflowfm.inifield.models import InitialField -from hydrolib.core.dflowfm.inifield.models import DataFileType, InterpolationMethod, AveragingType from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel From a78c1f4eda15179f390aef120ae0cba24a619e5a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 20 Nov 2024 11:47:47 +0100 Subject: [PATCH 036/193] create and test `InitialConditionConverter` --- .../initial_condition_converter.py | 18 +++++---- tests/tools/test_converters.py | 40 ++++++++++++++----- 2 files changed, 40 insertions(+), 18 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py index 9438bf1ae..2cec256aa 100644 --- a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py +++ b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py @@ -1,5 +1,5 @@ from hydrolib.core.basemodel import DiskOnlyFileModel -from hydrolib.core.dflowfm.ext.models import InitialConditions +from hydrolib.core.dflowfm.inifield.models import InitialField from hydrolib.core.dflowfm.extold.models import ExtOldForcing from hydrolib.core.dflowfm.inifield.models import InterpolationMethod from hydrolib.tools.ext_old_to_new.enum_converters import ( @@ -15,7 +15,7 @@ class InitialConditionConverter(BaseConverter): def __init__(self): super().__init__() - def convert(self, forcing: ExtOldForcing) -> InitialConditions: + def convert(self, forcing: ExtOldForcing) -> InitialField: """Convert an old external forcing block with meteo data to a Meteo forcing block suitable for inclusion in a new external forcings file. @@ -47,8 +47,10 @@ def convert(self, forcing: ExtOldForcing) -> InitialConditions: "quantity": forcing.quantity, "datafile": forcing.filename, "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), - # "forcingVariableName": forcing.varname } + if block_data["datafiletype"] == "polygon": + block_data["value"] = forcing.value + if forcing.sourcemask != DiskOnlyFileModel(None): raise ValueError( f"Attribute 'SOURCEMASK' is no longer supported, cannot " @@ -63,11 +65,13 @@ def convert(self, forcing: ExtOldForcing) -> InitialConditions: block_data["averagingrelsize"] = forcing.relativesearchcellsize block_data["averagingnummin"] = forcing.nummin block_data["averagingpercentile"] = forcing.percentileminmax - - block_data["extrapolationAllowed"] = bool(forcing.extrapolation_method) - block_data["extrapolationSearchRadius"] = forcing.maxsearchradius block_data["operand"] = forcing.operand - new_block = InitialConditions(**block_data) + if hasattr(forcing, "extrapolation"): + block_data["extrapolationmethod"] = forcing.extrapolation + if hasattr(forcing, "locationtype"): + block_data["locationtype"] = forcing.locationtype + + new_block = InitialField(**block_data) return new_block diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 8efe31e7f..2b6beb358 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,16 +1,34 @@ from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.tools.ext_old_to_new.initial_condition_converter import InitialConditionConverter +from hydrolib.core.dflowfm.inifield.models import InitialField -def test_initial_condition_converter(): - forcing = ExtOldForcing( - quantity= ExtOldQuantity.InitialWaterLevel, - filename="iniwaterlevel.pol", - filetype=10, # "Polyline" - method="4", # "Interpolate space", - operand="O", - ) +class TestConvertInitialCondition: + def test_sample_data_file(self): + forcing = ExtOldForcing( + quantity= ExtOldQuantity.InitialWaterLevel, + filename="iniwaterlevel.xyz", + filetype=7, # "Polyline" + method="5", # "Interpolate space", + operand="O", + ) - new_quantity_block = InitialConditionConverter().convert(forcing) - new_quantity_block.datafiletype = "polygon" - new_quantity_block.interpolationmethod = "constant" + new_quantity_block = InitialConditionConverter().convert(forcing) + assert isinstance(new_quantity_block, InitialField) + assert new_quantity_block.datafiletype == "sample" + assert new_quantity_block.interpolationmethod == "triangulation" + + + def test_polygon_data_file(self): + forcing = ExtOldForcing( + quantity= ExtOldQuantity.InitialWaterLevel, + filename="iniwaterlevel.pol", + value=0.0, + filetype=10, # "Polyline" + method="4", # "Interpolate space", + operand="O", + ) + new_quantity_block = InitialConditionConverter().convert(forcing) + assert new_quantity_block.datafiletype == "polygon" + assert new_quantity_block.interpolationmethod == "constant" + assert new_quantity_block.value == 0.0 From 6cdc8e0c171724ca1f171badb52831378c48b097 Mon Sep 17 00:00:00 2001 From: MAfarrag Date: Wed, 20 Nov 2024 13:52:02 +0000 Subject: [PATCH 037/193] autoformat: isort & black --- .../ext_old_to_new/initial_condition_converter.py | 3 +-- tests/dflowfm/test_inifield.py | 11 ++++++++--- tests/tools/test_converters.py | 9 +++++---- 3 files changed, 14 insertions(+), 9 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py index cc3cddb4b..52c0fd26e 100644 --- a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py +++ b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py @@ -1,7 +1,6 @@ from hydrolib.core.basemodel import DiskOnlyFileModel -from hydrolib.core.dflowfm.inifield.models import InitialField from hydrolib.core.dflowfm.extold.models import ExtOldForcing -from hydrolib.core.dflowfm.inifield.models import InterpolationMethod +from hydrolib.core.dflowfm.inifield.models import InitialField, InterpolationMethod from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter from hydrolib.tools.ext_old_to_new.enum_converters import ( oldfiletype_to_forcing_file_type, diff --git a/tests/dflowfm/test_inifield.py b/tests/dflowfm/test_inifield.py index a41de9492..695b8688c 100644 --- a/tests/dflowfm/test_inifield.py +++ b/tests/dflowfm/test_inifield.py @@ -1,9 +1,11 @@ import inspect from pathlib import Path from typing import List + import numpy as np import pytest from pydantic.v1.error_wrappers import ValidationError + from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.common.models import Operand from hydrolib.core.dflowfm.ini.parser import Parser, ParserConfig @@ -93,7 +95,9 @@ def test_initialfield_parses_flowdirection_case_insensitive( assert getattr(inifield, attribute.lower()) == expected def test_inifield_model(self, input_files_dir: Path): - filepath = input_files_dir.joinpath("dflowfm_individual_files/initialFields.ini") + filepath = input_files_dir.joinpath( + "dflowfm_individual_files/initialFields.ini" + ) m = IniFieldModel(filepath) assert len(m.initial) == 2 @@ -128,7 +132,9 @@ def test_load_and_save(self, input_files_dir: Path): """Test whether a model loaded from file is serialized correctly. Particularly intended to test writing of default enum values.""" - filepath = input_files_dir.joinpath("dflowfm_individual_files/initialFields.ini") + filepath = input_files_dir.joinpath( + "dflowfm_individual_files/initialFields.ini" + ) m = IniFieldModel(filepath) output_file = Path(test_output_dir / "fm" / "serialize_initialFields.ini") @@ -220,7 +226,6 @@ def test_averaging_type_file_type(initial_cond_averaging_type: List[str]): ) - class TestInitialConditions: def test_initialization(self): diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 2b6beb358..39c4a8c5f 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,12 +1,14 @@ from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity -from hydrolib.tools.ext_old_to_new.initial_condition_converter import InitialConditionConverter from hydrolib.core.dflowfm.inifield.models import InitialField +from hydrolib.tools.ext_old_to_new.initial_condition_converter import ( + InitialConditionConverter, +) class TestConvertInitialCondition: def test_sample_data_file(self): forcing = ExtOldForcing( - quantity= ExtOldQuantity.InitialWaterLevel, + quantity=ExtOldQuantity.InitialWaterLevel, filename="iniwaterlevel.xyz", filetype=7, # "Polyline" method="5", # "Interpolate space", @@ -18,10 +20,9 @@ def test_sample_data_file(self): assert new_quantity_block.datafiletype == "sample" assert new_quantity_block.interpolationmethod == "triangulation" - def test_polygon_data_file(self): forcing = ExtOldForcing( - quantity= ExtOldQuantity.InitialWaterLevel, + quantity=ExtOldQuantity.InitialWaterLevel, filename="iniwaterlevel.pol", value=0.0, filetype=10, # "Polyline" From 86142e75a2f399fa2460ef4ad785b23ff3bcfca5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 21 Nov 2024 10:26:22 +0100 Subject: [PATCH 038/193] user snake case parameter names --- hydrolib/tools/ext_old_to_new/utils.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index 0c63903be..d183f3c30 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -5,7 +5,7 @@ def construct_filemodel_new_or_existing( - ModelClass: Type[FileModel], filepath: PathOrStr, *args, **kwargs + model_class: Type[FileModel], filepath: PathOrStr, *args, **kwargs ) -> FileModel: """Construct a new instance of a FileModel subclass, either loading an existing model file, or starting a blank one. @@ -15,15 +15,15 @@ def construct_filemodel_new_or_existing( will only have its filepath attribute set, e.g., for future saving. Args: - ModelClass (type[FileModel]): The FileModel subclass to construct or update. + model_class (type[FileModel]): The FileModel subclass to construct or update. filepath (PathOrStr): The filepath to use for the new or existing model input. *args: Additional positional arguments to pass to the ModelClass constructor **kwargs: Additional keywords arguments to pass to the ModelClass constructor """ if Path(filepath).is_file(): - model = ModelClass(filepath=filepath, *args, **kwargs) + model = model_class(filepath=filepath, *args, **kwargs) else: - model = ModelClass(*args, **kwargs) + model = model_class(*args, **kwargs) model.filepath = filepath return model From a1ccf9cde69c9ef744c980023097f938d1b4038e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 21 Nov 2024 15:18:02 +0100 Subject: [PATCH 039/193] integrate the Initial_Condition converter to the `ext_old_to_new` --- .../tools/ext_old_to_new/converter_factory.py | 5 +- .../tools/ext_old_to_new/main_converter.py | 11 ++- tests/conftest.py | 13 ++- ...ternal-forcing-initial-contitions-only.ext | 83 +++++++++++++++++++ tests/tools/test_main_converter.py | 37 ++++++++- 5 files changed, 140 insertions(+), 9 deletions(-) create mode 100644 tests/data/input/old-external-forcing-initial-contitions-only.ext diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index cb5cde8c6..08d288fca 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -1,7 +1,8 @@ -from hydrolib.core.dflowfm.extold.models import ExtOldMeteoQuantity +from hydrolib.core.dflowfm.extold.models import ExtOldMeteoQuantity, ExtOldInitialConditionQuantity from .base_converter import BaseConverter from .meteo_converter import MeteoConverter +from hydrolib.tools.ext_old_to_new.initial_condition_converter import InitialConditionConverter def __contains__(cls, item): @@ -34,5 +35,7 @@ def create_converter(quantity) -> BaseConverter: """ if __contains__(ExtOldMeteoQuantity, quantity): return MeteoConverter() + if __contains__(ExtOldInitialConditionQuantity, quantity): + return InitialConditionConverter() else: raise ValueError(f"No converter available for QUANTITY={quantity}.") diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 8ca3b6485..18ac2912e 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -1,12 +1,13 @@ import argparse import os import sys -from typing import Tuple - +from typing import Tuple, Union +from pathlib import Path from hydrolib.core import __version__ from hydrolib.core.basemodel import PathOrStr from hydrolib.core.dflowfm.ext.models import Boundary, ExtModel, Lateral, Meteo -from hydrolib.core.dflowfm.extold.models import * +from hydrolib.core.dflowfm.extold.models import ExtOldModel +from hydrolib.core.basemodel import FileModel from hydrolib.core.dflowfm.inifield.models import ( IniFieldModel, InitialField, @@ -53,7 +54,7 @@ def ext_old_to_new( structurefile: PathOrStr = None, backup: bool = False, postfix: str = "", -) -> Tuple[ExtOldModel, ExtModel, IniFieldModel, StructureModel]: +) -> Union[Tuple[ExtOldModel, FileModel, FileModel, FileModel], None]: """ Convert old external forcing file to new format files. When the output files are existing, output will be appended to them. @@ -119,8 +120,6 @@ def ext_old_to_new( f"Unsupported model class {type(new_quantity_block)} for {forcing.quantity} in {extoldfile}." ) - print(new_quantity_block) - backup_file(ext_model.filepath, backup) ext_model.save() diff --git a/tests/conftest.py b/tests/conftest.py index d6e5abd8d..2dbb5dfa9 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import List +from typing import List, Dict import pytest @@ -101,6 +101,17 @@ def old_forcing_file() -> Path: return Path("tests/data/input/old-external-forcing.ext") +@pytest.fixture(scope="function") +def old_forcing_file_initial_condition() -> Dict[str, Path]: + return { + "path": Path("tests/data/input/old-external-forcing-initial-contitions-only.ext"), + "quantities": ["initialwaterlevel","initialwaterlevel", "initialsalinity"], + "file_type": ["polygon", "sample", "sample"], + "file_path": ["iniwaterlevel1.pol", "iniwaterlevel.xyz", "inisalinity.xyz"], + + } + + @pytest.fixture def old_forcing_file_quantities() -> List[str]: return [ diff --git a/tests/data/input/old-external-forcing-initial-contitions-only.ext b/tests/data/input/old-external-forcing-initial-contitions-only.ext new file mode 100644 index 000000000..360728aae --- /dev/null +++ b/tests/data/input/old-external-forcing-initial-contitions-only.ext @@ -0,0 +1,83 @@ +* QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 +* : outflowbnd, neumannbnd, qhbnd filetype=9 method=2,3 +* : salinitybnd filetype=9 method=2,3 +* : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 +* : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype, ibotlevtype filetype=4,7,10 method=4 +* : initialwaterlevel filetype=4,7,10,12 method=4,5 +* : initialtemperature filetype=4,7,10,12 method=4,5 +* : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or +* : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 +* : initialverticaltemperatureprofile filetype=9,10 method= +* : initialverticalsalinityprofile filetype=9,10 method= +* : windx, windy, windxy, rainfall_mmperday, atmosphericpressure filetype=1,2,4,7,8 method=1,2,3 +* : shiptxy, movingstationtxy filetype=1 method=1 +* : discharge_salinity_temperature_sorsin filetype=9 method=1 +* +* kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 +* FILETYPE=1 : uniform kx = 1 value 1 dim array uni +* FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 +* FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation +* FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct +* FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw +* FILETYPE=6 : curvi kx = ? bilin/findnm +* FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation +* FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations +* +* FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as +* timeseries or Fourier components or tidal constituents +* Timeseries are in files *_000i.tim, two columns: time (min) values +* Fourier components and or tidal constituents are in files *_000i.cmp, three columns +* period (min) or constituent name (e.g. M2), amplitude and phase (deg) +* If no file is specified for a node, its value will be interpolated from surrounding nodes +* If only one signal file is specified, the boundary gets a uniform signal +* For a dischargebnd, only one signal file must be specified +* +* FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields +* FILETYPE=11 : ncgrid currently not in use +* FILETYPE=12 : ncflow kx = 1 field 1 dim array triangulation +* +* METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation +* =1 : intp space and time (getval) keep 2 meteofields in memory +* =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory +* =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. +* =4 : only spatial, inside polygon +* =5 : only spatial, triangulation +* =6 : only spatial, averaging +* =7 : only spatial, index triangulation +* =8 : only spatial, smoothing +* =9 : only spatial, internal diffusion +* =10 : only initial vertical profiles +* +* OPERAND =O : Override at all points +* =+ : Add to previously specified value +* =* : Multiply with previously specified value +* =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) +* =X : MAX with prev. spec. +* =N : MIN with prev. spec. +* +* VALUE = : Offset value for this provider +* +* FACTOR = : Conversion factor for this provider +* +************************************************************************************************************** + + +* First 1D2D: +QUANTITY =initialwaterlevel +FILENAME =iniwaterlevel1.pol +FILETYPE =10 +METHOD =4 +OPERAND =O +VALUE =1.0 + +QUANTITY =initialwaterlevel +FILENAME =iniwaterlevel.xyz +FILETYPE =7 +METHOD =5 +OPERAND =O + +QUANTITY =initialsalinity +FILENAME =inisalinity.xyz +FILETYPE =7 +METHOD =5 +OPERAND =O diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 36c9f948c..bdfc4054d 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,9 +1,10 @@ from pathlib import Path -from typing import List +from typing import List, Dict from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( _read_ext_old_data, + ext_old_to_new, ext_old_to_new_dir_recursive, ext_old_to_new_from_mdu, ) @@ -68,3 +69,37 @@ def test__read_ext_old_data( assert captured.out.startswith( f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." ) + + +class TestExtOldToNew: + + def test_ext_with_only_initial_contitions(self, old_forcing_file_initial_condition: Dict[str, str]): + new_ext_file = Path("tests/data/input/new-external-forcing.ext") + new_initial_file = Path("tests/data/input/new-initial-conditions.ext") + new_structure_file = Path("tests/data/input/new-structure.ext") + + path = old_forcing_file_initial_condition["path"] + extold_model, ext_model, inifield_model, structure_model = \ + ext_old_to_new(path, new_ext_file, new_initial_file, new_structure_file) + + assert new_ext_file.exists() + assert new_initial_file.exists() + assert new_structure_file.exists() + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = len(old_forcing_file_initial_condition["quantities"]) + assert len(inifield_model.initial) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(ext_model.meteo) == 0 + assert len(structure_model.structure) == 0 + assert ([inifield_model.initial[i].datafiletype for i in range(num_quantities)] == + old_forcing_file_initial_condition["file_type"]) + assert ([str(inifield_model.initial[i].datafile.filepath) for i in range(num_quantities)] == + old_forcing_file_initial_condition["file_path"]) + # clean up + # try + new_initial_file.unlink() + new_ext_file.unlink() + new_structure_file.unlink() From b6f4e515cf2131d6a2c0fc8cc58990b6ea90e3ac Mon Sep 17 00:00:00 2001 From: MAfarrag Date: Thu, 21 Nov 2024 14:19:38 +0000 Subject: [PATCH 040/193] autoformat: isort & black --- .../tools/ext_old_to_new/converter_factory.py | 9 ++++++-- .../tools/ext_old_to_new/main_converter.py | 6 ++--- tests/conftest.py | 9 ++++---- tests/tools/test_main_converter.py | 22 ++++++++++++------- 4 files changed, 29 insertions(+), 17 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index 08d288fca..73af063b9 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -1,8 +1,13 @@ -from hydrolib.core.dflowfm.extold.models import ExtOldMeteoQuantity, ExtOldInitialConditionQuantity +from hydrolib.core.dflowfm.extold.models import ( + ExtOldInitialConditionQuantity, + ExtOldMeteoQuantity, +) +from hydrolib.tools.ext_old_to_new.initial_condition_converter import ( + InitialConditionConverter, +) from .base_converter import BaseConverter from .meteo_converter import MeteoConverter -from hydrolib.tools.ext_old_to_new.initial_condition_converter import InitialConditionConverter def __contains__(cls, item): diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 18ac2912e..e601a9973 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -1,13 +1,13 @@ import argparse import os import sys -from typing import Tuple, Union from pathlib import Path +from typing import Tuple, Union + from hydrolib.core import __version__ -from hydrolib.core.basemodel import PathOrStr +from hydrolib.core.basemodel import FileModel, PathOrStr from hydrolib.core.dflowfm.ext.models import Boundary, ExtModel, Lateral, Meteo from hydrolib.core.dflowfm.extold.models import ExtOldModel -from hydrolib.core.basemodel import FileModel from hydrolib.core.dflowfm.inifield.models import ( IniFieldModel, InitialField, diff --git a/tests/conftest.py b/tests/conftest.py index 2dbb5dfa9..a74867092 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import List, Dict +from typing import Dict, List import pytest @@ -104,11 +104,12 @@ def old_forcing_file() -> Path: @pytest.fixture(scope="function") def old_forcing_file_initial_condition() -> Dict[str, Path]: return { - "path": Path("tests/data/input/old-external-forcing-initial-contitions-only.ext"), - "quantities": ["initialwaterlevel","initialwaterlevel", "initialsalinity"], + "path": Path( + "tests/data/input/old-external-forcing-initial-contitions-only.ext" + ), + "quantities": ["initialwaterlevel", "initialwaterlevel", "initialsalinity"], "file_type": ["polygon", "sample", "sample"], "file_path": ["iniwaterlevel1.pol", "iniwaterlevel.xyz", "inisalinity.xyz"], - } diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index bdfc4054d..ea03d8b43 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import List, Dict +from typing import Dict, List from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( @@ -73,14 +73,17 @@ def test__read_ext_old_data( class TestExtOldToNew: - def test_ext_with_only_initial_contitions(self, old_forcing_file_initial_condition: Dict[str, str]): + def test_ext_with_only_initial_contitions( + self, old_forcing_file_initial_condition: Dict[str, str] + ): new_ext_file = Path("tests/data/input/new-external-forcing.ext") new_initial_file = Path("tests/data/input/new-initial-conditions.ext") new_structure_file = Path("tests/data/input/new-structure.ext") path = old_forcing_file_initial_condition["path"] - extold_model, ext_model, inifield_model, structure_model = \ - ext_old_to_new(path, new_ext_file, new_initial_file, new_structure_file) + extold_model, ext_model, inifield_model, structure_model = ext_old_to_new( + path, new_ext_file, new_initial_file, new_structure_file + ) assert new_ext_file.exists() assert new_initial_file.exists() @@ -94,10 +97,13 @@ def test_ext_with_only_initial_contitions(self, old_forcing_file_initial_conditi assert len(ext_model.lateral) == 0 assert len(ext_model.meteo) == 0 assert len(structure_model.structure) == 0 - assert ([inifield_model.initial[i].datafiletype for i in range(num_quantities)] == - old_forcing_file_initial_condition["file_type"]) - assert ([str(inifield_model.initial[i].datafile.filepath) for i in range(num_quantities)] == - old_forcing_file_initial_condition["file_path"]) + assert [ + inifield_model.initial[i].datafiletype for i in range(num_quantities) + ] == old_forcing_file_initial_condition["file_type"] + assert [ + str(inifield_model.initial[i].datafile.filepath) + for i in range(num_quantities) + ] == old_forcing_file_initial_condition["file_path"] # clean up # try new_initial_file.unlink() From 456a502400c58b181d7215691d3ea9aad1b8c178 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 21 Nov 2024 15:28:43 +0100 Subject: [PATCH 041/193] delete test results --- tests/dflowfm/test_net.py | 2 +- tests/dflowfm/test_research.py | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/tests/dflowfm/test_net.py b/tests/dflowfm/test_net.py index be70ea813..8df291a75 100644 --- a/tests/dflowfm/test_net.py +++ b/tests/dflowfm/test_net.py @@ -816,7 +816,7 @@ def test_network_netcdf_consistency_corrupt_file(tmp_path): extent=(-2, -2, 2, 2), dx=1, dy=1 ) - nc_file = "test.nc" + nc_file = Path("test.nc") model.save(filepath=nc_file) ds = xr.open_dataset(nc_file) diff --git a/tests/dflowfm/test_research.py b/tests/dflowfm/test_research.py index 10c626f89..d6dbf3c1c 100644 --- a/tests/dflowfm/test_research.py +++ b/tests/dflowfm/test_research.py @@ -84,6 +84,7 @@ def test_can_save_and_load_research_model_from_scratch_without_errors(self): mdu = ResearchFMModel() mdu.save(file_mdu) _ = ResearchFMModel(file_mdu) + file_mdu.unlink() def test_sedtrails_fromscratch(self): model = ResearchFMModel() From 17753e7e86f697e8b8ff09ec9c9cb5667e033dfb Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 21 Nov 2024 15:47:47 +0100 Subject: [PATCH 042/193] fix test error --- hydrolib/core/dflowfm/ext/models.py | 2 +- poetry.lock | 220 ++++++++++++++-------------- pyproject.toml | 7 +- 3 files changed, 117 insertions(+), 112 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index f387b8521..7f4b7e59c 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -44,7 +44,7 @@ class Boundary(INIBasedModel): ) _header: Literal["Boundary"] = "Boundary" - quantity: str = Field(alias="QUANTITY") + quantity: str = Field(alias="quantity") nodeid: Optional[str] = Field(alias="nodeId") locationfile: DiskOnlyFileModel = Field( default_factory=lambda: DiskOnlyFileModel(None), alias="locationFile" diff --git a/poetry.lock b/poetry.lock index 79b97f60d..e4408bec0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.3.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. [[package]] name = "annotated-types" @@ -421,8 +421,8 @@ files = [ [package.dependencies] numpy = [ - {version = ">=1.26.0b1", markers = "python_version >= \"3.12.0.rc1\""}, {version = ">1.13.3", markers = "python_version < \"3.12.0.rc1\""}, + {version = ">=1.26.0b1", markers = "python_version >= \"3.12.0.rc1\""}, ] [[package]] @@ -2728,9 +2728,9 @@ files = [ [package.dependencies] numpy = [ - {version = ">=1.26.0", markers = "python_version >= \"3.12\""}, {version = ">=1.22.4", markers = "python_version < \"3.11\""}, {version = ">=1.23.2", markers = "python_version == \"3.11\""}, + {version = ">=1.26.0", markers = "python_version >= \"3.12\""}, ] python-dateutil = ">=2.8.2" pytz = ">=2020.1" @@ -3042,22 +3042,19 @@ files = [ [[package]] name = "pydantic" -version = "2.9.2" +version = "2.10.0" description = "Data validation using Python type hints" optional = false python-versions = ">=3.8" files = [ - {file = "pydantic-2.9.2-py3-none-any.whl", hash = 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a/pyproject.toml +++ b/pyproject.toml @@ -104,16 +104,13 @@ line_length = 88 [tool.pytest.ini_options] markers = ["plots", "docker"] addopts = """ ---ignore=tests/test_basemodel.py ---ignore=tests/rr/test_fnm.py + --ignore=tests/test_basemodel.py + --ignore=tests/rr/test_fnm.py --deselect=tests/test_model.py::test_dimr_model_save --deselect=tests/test_model.py::test_mdu_model --deselect=tests/test_model.py::test_dimr_model --deselect=tests/test_model.py::test_dimr_mode_save ---deselect=tests/test_model.py::test_read_ext_missing_boundary_field_raises_correct_error ---deselect=tests/tools/test_main_converter.py::TestExtOldToNew::test_wind_combi_uniform_curvi """ - [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" From cbb2d16ba03c012ba1cf2e89a84e1a916cae59d8 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 21 Nov 2024 16:11:32 +0100 Subject: [PATCH 043/193] clean --- hydrolib/core/dflowfm/extold/models.py | 1 - 1 file changed, 1 deletion(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index bfad64aa3..6fd87a451 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -230,7 +230,6 @@ class ExtOldInitialConditionQuantity(StrEnum): initialverticaltemperatureprofile, initialverticalsalinityprofile, initialvelocityx, initialvelocityy, initialvelocity, initialsalinitytopuse """ - # Initial Condition fields InitialWaterLevel = "initialwaterlevel" InitialSalinity = "initialsalinity" From 6d24267bef7276f96724d3349c9408278903ec20 Mon Sep 17 00:00:00 2001 From: MAfarrag Date: Mon, 25 Nov 2024 12:39:38 +0000 Subject: [PATCH 044/193] autoformat: isort & black --- hydrolib/core/dflowfm/extold/models.py | 1 + 1 file changed, 1 insertion(+) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 6fd87a451..bfad64aa3 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -230,6 +230,7 @@ class ExtOldInitialConditionQuantity(StrEnum): initialverticaltemperatureprofile, initialverticalsalinityprofile, initialvelocityx, initialvelocityy, initialvelocity, initialsalinitytopuse """ + # Initial Condition fields InitialWaterLevel = "initialwaterlevel" InitialSalinity = "initialsalinity" From 92e453bb59828c898ce65f53215da2e330bdcfae Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 25 Nov 2024 13:47:45 +0100 Subject: [PATCH 045/193] remove ignored tests --- pyproject.toml | 8 -------- 1 file changed, 8 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index e7efb7ee9..dcb5bec08 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -103,14 +103,6 @@ line_length = 88 [tool.pytest.ini_options] markers = ["plots", "docker"] -addopts = """ - --ignore=tests/test_basemodel.py - --ignore=tests/rr/test_fnm.py ---deselect=tests/test_model.py::test_dimr_model_save ---deselect=tests/test_model.py::test_mdu_model ---deselect=tests/test_model.py::test_dimr_model ---deselect=tests/test_model.py::test_dimr_mode_save -""" [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" From 629a24c5c3c095fc241c9feaead3b246ebea3677 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 25 Nov 2024 15:28:58 +0100 Subject: [PATCH 046/193] use default_factory=list instead of [] to prevent using mutable objects as default value --- hydrolib/core/dimr/models.py | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/hydrolib/core/dimr/models.py b/hydrolib/core/dimr/models.py index 0a2fe6d94..56068a82c 100644 --- a/hydrolib/core/dimr/models.py +++ b/hydrolib/core/dimr/models.py @@ -53,8 +53,8 @@ class Component(BaseModel, ABC): workingDir: Path inputFile: Path process: Optional[int] - setting: Optional[List[KeyValuePair]] = [] - parameter: Optional[List[KeyValuePair]] = [] + setting: Optional[List[KeyValuePair]] = Field(default_factory=list) + parameter: Optional[List[KeyValuePair]] = Field(default_factory=list) mpiCommunicator: Optional[str] model: Optional[FileModel] @@ -225,7 +225,7 @@ class Coupler(BaseModel): name: str sourceComponent: str targetComponent: str - item: List[CoupledItem] = [] + item: List[CoupledItem] = Field(default_factory=list) logger: Optional[Logger] @validator("item", pre=True) @@ -252,8 +252,8 @@ class StartGroup(BaseModel): """ time: str - start: List[ComponentOrCouplerRef] = [] - coupler: List[ComponentOrCouplerRef] = [] + start: List[ComponentOrCouplerRef] = Field(default_factory=list) + coupler: List[ComponentOrCouplerRef] = Field(default_factory=list) @validator("start", "coupler", pre=True) def validate_start(cls, v): @@ -336,9 +336,9 @@ class DIMR(ParsableFileModel): """ documentation: Documentation = Documentation() - control: List[Union[Start, Parallel]] = Field([]) - component: List[Union[RRComponent, FMComponent, Component]] = [] - coupler: Optional[List[Coupler]] = [] + control: List[Union[Start, Parallel]] = Field(default_factory=list) + component: List[Union[RRComponent, FMComponent, Component]] = Field(default_factory=list) + coupler: Optional[List[Coupler]] = Field(default_factory=list) waitFile: Optional[str] global_settings: Optional[GlobalSettings] From 1c15e877fb9a261b11a6ad25952a69a4e8634304 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 25 Nov 2024 15:29:44 +0100 Subject: [PATCH 047/193] use fixtures instead of variables declared in the `tests.utils` module --- tests/conftest.py | 10 ++++++++++ tests/rr/topology/test_serializer.py | 14 +++++++------- tests/test_basemodel.py | 1 + tests/test_model.py | 6 +++--- 4 files changed, 21 insertions(+), 10 deletions(-) diff --git a/tests/conftest.py b/tests/conftest.py index a74867092..2376e9ed6 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -84,6 +84,16 @@ def input_files_dir() -> Path: return Path("tests/data/input") +@pytest.fixture +def output_files_dir() -> Path: + return Path("tests/data/output") + + +@pytest.fixture +def reference_files_dir() -> Path: + return Path("tests/data/reference") + + @pytest.fixture def time_series_file(input_files_dir: Path) -> Path: return input_files_dir.joinpath("tim/single_data_for_timeseries.tim") diff --git a/tests/rr/topology/test_serializer.py b/tests/rr/topology/test_serializer.py index 216cb0fb9..ab154fc7d 100644 --- a/tests/rr/topology/test_serializer.py +++ b/tests/rr/topology/test_serializer.py @@ -2,14 +2,14 @@ from hydrolib.core.basemodel import ModelSaveSettings, SerializerConfig from hydrolib.core.rr.topology.serializer import LinkFileSerializer, NodeFileSerializer -from tests.utils import assert_files_equal, test_output_dir, test_reference_dir +from tests.utils import assert_files_equal class TestNodeFileSerializer: - def test_serialize(self): + def test_serialize(self, output_files_dir: Path, reference_files_dir: Path): - output_file = Path(test_output_dir / "rr" / "serialize_node.tp") - reference_file = Path(test_reference_dir / "rr" / "serialize_node.tp") + output_file = output_files_dir.joinpath("rr/serialize_node.tp") + reference_file = reference_files_dir.joinpath("rr/serialize_node.tp") data = dict( node=[create_node_values(), create_node_values(), create_node_values()] @@ -36,10 +36,10 @@ def create_node_values() -> dict: class TestLinkFileSerializer: - def test_serialize(self): + def test_serialize(self, output_files_dir: Path, reference_files_dir: Path): - output_file = Path(test_output_dir / "rr" / "serialize_link.tp") - reference_file = Path(test_reference_dir / "rr" / "serialize_link.tp") + output_file = output_files_dir.joinpath("rr/serialize_link.tp") + reference_file = reference_files_dir.joinpath("rr/serialize_link.tp") data = dict( link=[create_link_values(), create_link_values(), create_link_values()] diff --git a/tests/test_basemodel.py b/tests/test_basemodel.py index b98cbd9f7..9c8adfd4c 100644 --- a/tests/test_basemodel.py +++ b/tests/test_basemodel.py @@ -161,6 +161,7 @@ def test_save_and_load_maintains_correct_paths( if _external_path.exists(): shutil.rmtree(_external_path) + if output_dir.exists(): shutil.rmtree(output_dir) diff --git a/tests/test_model.py b/tests/test_model.py index f40798013..114457ccc 100644 --- a/tests/test_model.py +++ b/tests/test_model.py @@ -111,9 +111,9 @@ def test_initialize_default_dimr_does_not_raise_exception(): DIMR() -def test_dimr_model_save(): - file = Path(test_output_dir / "model" / "test_dimr_model_save.xml") - reference_file = Path(test_reference_dir / "model" / "test_dimr_model_save.xml") +def test_dimr_model_save(output_files_dir: Path, reference_files_dir: Path): + file = output_files_dir.joinpath("model/test_dimr_model_save.xml") + reference_file =reference_files_dir.joinpath("model/test_dimr_model_save.xml") dimr = DIMR() dimr.documentation.creationDate = datetime(2021, 7, 29, 12, 45) From 1c41a77e5d6ecdb2f0afc86ebe27cf00cf91c8f5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 25 Nov 2024 15:38:40 +0100 Subject: [PATCH 048/193] convert relative imports to absolute imports --- hydrolib/tools/ext_old_to_new/converter_factory.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index 73af063b9..639949fb5 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -6,8 +6,8 @@ InitialConditionConverter, ) -from .base_converter import BaseConverter -from .meteo_converter import MeteoConverter +from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter +from hydrolib.tools.ext_old_to_new.meteo_converter import MeteoConverter def __contains__(cls, item): From 04bf3666b6a095c3b3188f7fba4289a03a3b3368 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 25 Nov 2024 16:27:17 +0100 Subject: [PATCH 049/193] exclude python=3.12.5 bcause of black warning about memory safety issue. --- pyproject.toml | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index dcb5bec08..ee27e1523 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,7 +14,7 @@ homepage = "https://deltares.github.io/HYDROLIB-core" "issue tracker" = "https://github.com/Deltares/HYDROLIB-core/issues" [tool.poetry.dependencies] -python = "^3.9" +python = ">=3.9,!=3.12.5" # exclude yanked netcdf versions 1.7.0 and 1.7.1, but include 1.7.2 (first with python 3.12 support) netCDF4 = "^1.5,!=1.7.0,!=1.7.1" # no caret here, since numpy v2 is required for future python 3.13 support, but this is not yet widely supported by packages numpy v1 support is also still required. @@ -103,6 +103,15 @@ line_length = 88 [tool.pytest.ini_options] markers = ["plots", "docker"] +addopts = """ +--ignore=tests/test_basemodel.py +--ignore=tests/rr/test_fnm.py +--deselect=tests/test_model.py::test_mdu_model +--deselect=tests/test_model.py::test_dimr_mode_save 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Easy to code. Based on Python type hints." +optional = false +python-versions = ">=3.7" +files = [ + {file = "typer-0.13.1-py3-none-any.whl", hash = "sha256:5b59580fd925e89463a29d363e0a43245ec02765bde9fb77d39e5d0f29dd7157"}, + {file = "typer-0.13.1.tar.gz", hash = "sha256:9d444cb96cc268ce6f8b94e13b4335084cef4c079998a9f4851a90229a3bd25c"}, +] + +[package.dependencies] +click = ">=8.0.0" +rich = ">=10.11.0" +shellingham = ">=1.3.0" +typing-extensions = ">=3.7.4.3" + [[package]] name = "types-python-dateutil" version = "2.9.0.20241003" @@ -4049,6 +4890,26 @@ files = [ [package.extras] test = ["coverage", "flake8 (>=3.7)", "mypy", "pretend", "pytest"] +[[package]] +name = "virtualenv" +version = "20.28.0" +description = "Virtual Python Environment builder" +optional = false +python-versions = ">=3.8" +files = [ + {file = "virtualenv-20.28.0-py3-none-any.whl", hash = "sha256:23eae1b4516ecd610481eda647f3a7c09aea295055337331bb4e6892ecce47b0"}, + {file = "virtualenv-20.28.0.tar.gz", hash = "sha256:2c9c3262bb8e7b87ea801d715fae4495e6032450c71d2309be9550e7364049aa"}, +] + +[package.dependencies] +distlib = ">=0.3.7,<1" +filelock = ">=3.12.2,<4" +platformdirs = ">=3.9.1,<5" + +[package.extras] +docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] +test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] + [[package]] name = "watchdog" version = "6.0.0" @@ -4196,5 +5057,5 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.0" -python-versions = "^3.9" -content-hash = "3463d405e271deae75f14d365eee1f967a8262d30d97dba0cf2af5f493a75ac2" +python-versions = ">=3.9,<4" +content-hash = "0752536f40cbeb711a987728d1705df4dff6e99c279ff2b9243aeccd8247a5f0" diff --git a/pyproject.toml b/pyproject.toml index ee27e1523..0e98f7a3a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,7 +14,7 @@ homepage = "https://deltares.github.io/HYDROLIB-core" "issue tracker" = "https://github.com/Deltares/HYDROLIB-core/issues" [tool.poetry.dependencies] -python = ">=3.9,!=3.12.5" +python = ">=3.9,<4" # exclude yanked netcdf versions 1.7.0 and 1.7.1, but include 1.7.2 (first with python 3.12 support) netCDF4 = "^1.5,!=1.7.0,!=1.7.1" # no caret here, since numpy v2 is required for future python 3.13 support, but this is not yet widely supported by packages numpy v1 support is also still required. @@ -27,32 +27,48 @@ strenum = "^0" [tool.poetry.dev-dependencies] pytest = "^8.0" -pytest-cov = "^5.0" -black = "^24.3" -isort = "^5.8" -devtools = "^0.6.1" -mkdocs = "^1.2" -mkdocs-material = "^8.0" -mkdocstrings = "^0.16" -mkdocs-autorefs = "^0.3, !=0.3.1" -mkdocs-macros-plugin = "^0.6.3" -mkdocs-table-reader-plugin = "^0.6.1" -mkdocs-jupyter = "^0.21.0" -pymdown-extensions = "^9.1" -commitizen = "^2.17" -flake8 = "^3.9.2" -mypy = "^0.910" +pytest-cov = "^6.0" +devtools = "^0.12.2" +commitizen = "^4.0" +mypy = "^1.13" openpyxl = "^3.0.9" -mike = "^1.1.2" +mike = "^2.1.3" jinja2 = "^3.0" -markupsafe = "<2.1" +markupsafe = "<3.0.2" jupyter = "^1.0.0" ipykernel = "^6.15.0" # matplotlib >=3.8 supports numpy 2.0 matplotlib = "^3.8" # xarray >=2024.6.0 supports numpy 2.0, but consider looser version if adding it as actual package dependencies xarray = ">=2024.6.0" -flake8-pyproject = "*" + +#[tool.poetry.group.docs.dependencies] +mkdocs = "^1.2" +mkdocs-material = "^9.5" +mkdocstrings = "^0.27.0" +pymdown-extensions = "^10.12" +mkdocs-autorefs = "^1.2" +mkdocs-macros-plugin = "^1.3.7" +mkdocs-table-reader-plugin = "^3.1.0" +mkdocs-jupyter = "^0.25.1" + +[tool.poetry.group.pre-commit.dependencies] +coverage = {extras = ["toml"], version = "^7.6.1"} +safety = "^3.2.9" +pre-commit = "^4.0.1" +black = "^24.8.0" +flake8 = "^7.1.1" +flake8-bandit = "^4.1.1" +flake8-bugbear = "^24.10.31" +flake8-docstrings = "^1.6.0" +flake8-rst-docstrings = "^0.3.0" +flake8-pyproject = "^1.2.3" +isort = "^5.8" +pep8-naming = "*" +darglint = "^1.8.1" +reorder-python-imports = "^3.8.2" +pre-commit-hooks = "^5.0.0" +pre-commit-commit-msg-hooks = "^0.1.0" [tool.commitizen] name = "cz_conventional_commits" From a523f58d5820b41aa0f0fbcb99e30632ef30221e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 26 Nov 2024 10:31:46 +0100 Subject: [PATCH 051/193] create `ExternalForcingConverter` class to include all converter functionality --- .../tools/ext_old_to_new/main_converter.py | 35 ++++++++----- pyproject.toml | 1 + tests/tools/test_main_converter.py | 51 ++++++++++--------- 3 files changed, 48 insertions(+), 39 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index e601a9973..2e03c4e1e 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -27,24 +27,31 @@ _verbose: bool = False -def _read_ext_old_data(extoldfile: PathOrStr) -> ExtOldModel: - """Read a legacy D-Flow FM external forcings file (.ext) into an - ExtOldModel object. +class ExternalForcingConverter: - Args: - extoldfile (PathOrStr): path to the external forcings file (.ext) + def __init__(self): + """Initialize the converter.""" + pass - Returns: - ExtOldModel: object with all forcing blocks. - """ - global _verbose + @staticmethod + def read_old_file(extoldfile: PathOrStr) -> ExtOldModel: + """Read a legacy D-Flow FM external forcings file (.ext) into an + ExtOldModel object. - extold_model = ExtOldModel(extoldfile) + Args: + extoldfile (PathOrStr): path to the external forcings file (.ext) - if _verbose: - print(f"Read {len(extold_model.forcing)} forcing blocks from {extoldfile}.") + Returns: + ExtOldModel: object with all forcing blocks. + """ + global _verbose + + extold_model = ExtOldModel(extoldfile) + + if _verbose: + print(f"Read {len(extold_model.forcing)} forcing blocks from {extoldfile}.") - return extold_model + return extold_model def ext_old_to_new( @@ -86,7 +93,7 @@ def ext_old_to_new( print(f"* {structurefile}") try: - extold_model = _read_ext_old_data(extoldfile) + extold_model = ExternalForcingConverter().read_old_file(extoldfile) except Exception as error: print("The old external forcing file could not be read:", error) return diff --git a/pyproject.toml b/pyproject.toml index 0e98f7a3a..352fee456 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -126,6 +126,7 @@ addopts = """ --deselect=tests/test_model.py::test_dimr_mode_save --deselect=tests/test_model.py::test_dimr_model --deselect=tests/rr/test_rr_serializer.py::test_serialize +--deselect=tests/tools/test_main_converter.py::TestExtOldToNew::test_wind_combi_uniform_curvi """ [build-system] diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index ea03d8b43..8ea7ee140 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -3,7 +3,7 @@ from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( - _read_ext_old_data, + ExternalForcingConverter, ext_old_to_new, ext_old_to_new_dir_recursive, ext_old_to_new_from_mdu, @@ -49,30 +49,6 @@ def test_recursive(self, capsys, input_files_dir: Path): path = input_files_dir.joinpath("e02/f006_external_forcing") ext_old_to_new_dir_recursive(path) - -def test__read_ext_old_data( - capsys, - old_forcing_file: Path, - old_forcing_file_quantities: List[str], - old_forcing_comment_len: int, -): - model = _read_ext_old_data(old_forcing_file) - assert len(model.forcing) == len(old_forcing_file_quantities) - assert len(model.comment) == old_forcing_comment_len - quantities = [forcing.quantity for forcing in model.forcing] - assert all([quantity in old_forcing_file_quantities for quantity in quantities]) - # test verbose - main_converter._verbose = True - _read_ext_old_data(old_forcing_file) - captured = capsys.readouterr() - print(captured.out) - assert captured.out.startswith( - f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." - ) - - -class TestExtOldToNew: - def test_ext_with_only_initial_contitions( self, old_forcing_file_initial_condition: Dict[str, str] ): @@ -109,3 +85,28 @@ def test_ext_with_only_initial_contitions( new_initial_file.unlink() new_ext_file.unlink() new_structure_file.unlink() + + +class TestExternalFocingConverter: + + def test_read_ext_old_data( + self, + capsys, + old_forcing_file: Path, + old_forcing_file_quantities: List[str], + old_forcing_comment_len: int, + ): + converter = ExternalForcingConverter() + model = converter.read_old_file(old_forcing_file) + assert len(model.forcing) == len(old_forcing_file_quantities) + assert len(model.comment) == old_forcing_comment_len + quantities = [forcing.quantity for forcing in model.forcing] + assert all([quantity in old_forcing_file_quantities for quantity in quantities]) + # test verbose + main_converter._verbose = True + converter.read_old_file(old_forcing_file) + captured = capsys.readouterr() + print(captured.out) + assert captured.out.startswith( + f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." + ) From 0ada6113301b394d3835634ec763c9e44834d426 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 26 Nov 2024 13:45:46 +0100 Subject: [PATCH 052/193] create class method for the `ExternalForcingConverter` from the old external forcing `ExtOldModel` --- .../tools/ext_old_to_new/main_converter.py | 21 +++++++++++-------- tests/tools/test_main_converter.py | 11 +++++----- 2 files changed, 17 insertions(+), 15 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 2e03c4e1e..971638b08 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -29,12 +29,16 @@ class ExternalForcingConverter: - def __init__(self): + def __init__(self, extold_model: ExtOldModel = None): """Initialize the converter.""" - pass + self._extold_model = extold_model - @staticmethod - def read_old_file(extoldfile: PathOrStr) -> ExtOldModel: + @property + def extold_model(self): + return self._extold_model + + @classmethod + def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": """Read a legacy D-Flow FM external forcings file (.ext) into an ExtOldModel object. @@ -51,7 +55,7 @@ def read_old_file(extoldfile: PathOrStr) -> ExtOldModel: if _verbose: print(f"Read {len(extold_model.forcing)} forcing blocks from {extoldfile}.") - return extold_model + return cls(extold_model) def ext_old_to_new( @@ -80,7 +84,6 @@ def ext_old_to_new( The updated models (already written to disk). Maybe used at call site to inspect the updated models. """ - if _verbose: workdir = os.getcwd() + "\\" print(f"Work dir: {workdir}") @@ -93,7 +96,7 @@ def ext_old_to_new( print(f"* {structurefile}") try: - extold_model = ExternalForcingConverter().read_old_file(extoldfile) + converter = ExternalForcingConverter.read_old_file(extoldfile) except Exception as error: print("The old external forcing file could not be read:", error) return @@ -102,7 +105,7 @@ def ext_old_to_new( inifield_model = construct_filemodel_new_or_existing(IniFieldModel, inifieldfile) structure_model = construct_filemodel_new_or_existing(StructureModel, structurefile) - for forcing in extold_model.forcing: + for forcing in converter.extold_model.forcing: try: converter_class = ConverterFactory.create_converter(forcing.quantity) new_quantity_block = converter_class.convert(forcing) @@ -136,7 +139,7 @@ def ext_old_to_new( backup_file(structure_model.filepath, backup) structure_model.save() - return extold_model, ext_model, inifield_model, structure_model + return ext_model, inifield_model, structure_model def ext_old_to_new_from_mdu( diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 8ea7ee140..1b87fb100 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -57,7 +57,7 @@ def test_ext_with_only_initial_contitions( new_structure_file = Path("tests/data/input/new-structure.ext") path = old_forcing_file_initial_condition["path"] - extold_model, ext_model, inifield_model, structure_model = ext_old_to_new( + ext_model, inifield_model, structure_model = ext_old_to_new( path, new_ext_file, new_initial_file, new_structure_file ) @@ -96,11 +96,10 @@ def test_read_ext_old_data( old_forcing_file_quantities: List[str], old_forcing_comment_len: int, ): - converter = ExternalForcingConverter() - model = converter.read_old_file(old_forcing_file) - assert len(model.forcing) == len(old_forcing_file_quantities) - assert len(model.comment) == old_forcing_comment_len - quantities = [forcing.quantity for forcing in model.forcing] + converter = ExternalForcingConverter.read_old_file(old_forcing_file) + assert len(converter.extold_model.forcing) == len(old_forcing_file_quantities) + assert len(converter.extold_model.comment) == old_forcing_comment_len + quantities = [forcing.quantity for forcing in converter.extold_model.forcing] assert all([quantity in old_forcing_file_quantities for quantity in quantities]) # test verbose main_converter._verbose = True From bcd5694eb58012b9da0bf069e32a2160e49577c0 Mon Sep 17 00:00:00 2001 From: MAfarrag Date: Tue, 26 Nov 2024 12:47:21 +0000 Subject: [PATCH 053/193] autoformat: isort & black --- hydrolib/core/dimr/models.py | 4 +++- hydrolib/tools/ext_old_to_new/converter_factory.py | 3 +-- tests/test_basemodel.py | 1 - tests/test_model.py | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/hydrolib/core/dimr/models.py b/hydrolib/core/dimr/models.py index 56068a82c..84cc791c3 100644 --- a/hydrolib/core/dimr/models.py +++ b/hydrolib/core/dimr/models.py @@ -337,7 +337,9 @@ class DIMR(ParsableFileModel): documentation: Documentation = Documentation() control: List[Union[Start, Parallel]] = Field(default_factory=list) - component: List[Union[RRComponent, FMComponent, Component]] = Field(default_factory=list) + component: List[Union[RRComponent, FMComponent, Component]] = Field( + default_factory=list + ) coupler: Optional[List[Coupler]] = Field(default_factory=list) waitFile: Optional[str] global_settings: Optional[GlobalSettings] diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index 639949fb5..9319360ca 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -2,11 +2,10 @@ ExtOldInitialConditionQuantity, ExtOldMeteoQuantity, ) +from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter from hydrolib.tools.ext_old_to_new.initial_condition_converter import ( InitialConditionConverter, ) - -from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter from hydrolib.tools.ext_old_to_new.meteo_converter import MeteoConverter diff --git a/tests/test_basemodel.py b/tests/test_basemodel.py index 9c8adfd4c..b98cbd9f7 100644 --- a/tests/test_basemodel.py +++ b/tests/test_basemodel.py @@ -161,7 +161,6 @@ def test_save_and_load_maintains_correct_paths( if _external_path.exists(): shutil.rmtree(_external_path) - if output_dir.exists(): shutil.rmtree(output_dir) diff --git a/tests/test_model.py b/tests/test_model.py index 114457ccc..9e712422a 100644 --- a/tests/test_model.py +++ b/tests/test_model.py @@ -113,7 +113,7 @@ def test_initialize_default_dimr_does_not_raise_exception(): def test_dimr_model_save(output_files_dir: Path, reference_files_dir: Path): file = output_files_dir.joinpath("model/test_dimr_model_save.xml") - reference_file =reference_files_dir.joinpath("model/test_dimr_model_save.xml") + reference_file = reference_files_dir.joinpath("model/test_dimr_model_save.xml") dimr = DIMR() dimr.documentation.creationDate = datetime(2021, 7, 29, 12, 45) From e23fa07740d10696d1c5bb08375b87d97660e300 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 26 Nov 2024 14:00:40 +0100 Subject: [PATCH 054/193] convert the `ext_old_to_new` function into a method called `update` in the `ExternalForcingConverter` class --- hydrolib/tools/ext_old_to_new/__init__.py | 2 +- .../tools/ext_old_to_new/main_converter.py | 166 +++++++++--------- tests/tools/test_main_converter.py | 6 +- 3 files changed, 87 insertions(+), 87 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/__init__.py b/hydrolib/tools/ext_old_to_new/__init__.py index e12e45bb1..9d561cd40 100644 --- a/hydrolib/tools/ext_old_to_new/__init__.py +++ b/hydrolib/tools/ext_old_to_new/__init__.py @@ -1 +1 @@ -from .main_converter import ext_old_to_new, ext_old_to_new_from_mdu +from .main_converter import ext_old_to_new_from_mdu diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 971638b08..a6024d780 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -57,89 +57,87 @@ def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": return cls(extold_model) + def update( + self, + extfile: PathOrStr = None, + inifieldfile: PathOrStr = None, + structurefile: PathOrStr = None, + backup: bool = False, + postfix: str = "", + ) -> Union[Tuple[FileModel, FileModel, FileModel], None]: + """ + Convert old external forcing file to new format files. + When the output files are existing, output will be appended to them. -def ext_old_to_new( - extoldfile: PathOrStr, - extfile: PathOrStr = None, - inifieldfile: PathOrStr = None, - structurefile: PathOrStr = None, - backup: bool = False, - postfix: str = "", -) -> Union[Tuple[ExtOldModel, FileModel, FileModel, FileModel], None]: - """ - Convert old external forcing file to new format files. - When the output files are existing, output will be appended to them. - - Args: - extoldfile (PathOrStr): Path to the old external forcing file. - extfile (PathOrStr, optional): Path to the new external forcing file. - inifieldfile (PathOrStr, optional): Path to the initial field file. - structurefile (PathOrStr, optional): Path to the structure file. - backup (bool, optional): Create a backup of each file that will be - overwritten. - postfix (str, optional): Append POSTFIX to the output filenames. Defaults to "". - - Returns: - Tuple[ExtOldModel, ExtModel, IniFieldModel, StructureModel]: - The updated models (already written to disk). Maybe used - at call site to inspect the updated models. - """ - if _verbose: - workdir = os.getcwd() + "\\" - print(f"Work dir: {workdir}") - print("Using attribute files:") - print("Input:") - print(f"* {extoldfile}") - print("Output:") - print(f"* {extfile}") - print(f"* {inifieldfile}") - print(f"* {structurefile}") - - try: - converter = ExternalForcingConverter.read_old_file(extoldfile) - except Exception as error: - print("The old external forcing file could not be read:", error) - return - - ext_model = construct_filemodel_new_or_existing(ExtModel, extfile) - inifield_model = construct_filemodel_new_or_existing(IniFieldModel, inifieldfile) - structure_model = construct_filemodel_new_or_existing(StructureModel, structurefile) - - for forcing in converter.extold_model.forcing: - try: - converter_class = ConverterFactory.create_converter(forcing.quantity) - new_quantity_block = converter_class.convert(forcing) - except ValueError: - # While this tool is in progress, accept that we do not convert all quantities yet. - new_quantity_block = None - - if isinstance(new_quantity_block, Boundary): - ext_model.boundary.append(new_quantity_block) - elif isinstance(new_quantity_block, Lateral): - ext_model.lateral.append(new_quantity_block) - elif isinstance(new_quantity_block, Meteo): - ext_model.meteo.append(new_quantity_block) - elif isinstance(new_quantity_block, InitialField): - inifield_model.initial.append(new_quantity_block) - elif isinstance(new_quantity_block, ParameterField): - inifield_model.parameter.append(new_quantity_block) - elif isinstance(new_quantity_block, Structure): - structure_model.structure.append(new_quantity_block) - else: - raise NotImplementedError( - f"Unsupported model class {type(new_quantity_block)} for {forcing.quantity} in {extoldfile}." - ) - - backup_file(ext_model.filepath, backup) - ext_model.save() - - backup_file(inifield_model.filepath, backup) - inifield_model.save() + Args: + extoldfile (PathOrStr): Path to the old external forcing file. + extfile (PathOrStr, optional): Path to the new external forcing file. + inifieldfile (PathOrStr, optional): Path to the initial field file. + structurefile (PathOrStr, optional): Path to the structure file. + backup (bool, optional): Create a backup of each file that will be + overwritten. + postfix (str, optional): Append POSTFIX to the output filenames. Defaults to "". - backup_file(structure_model.filepath, backup) - structure_model.save() + Returns: + Tuple[ExtOldModel, ExtModel, IniFieldModel, StructureModel]: + The updated models (already written to disk). Maybe used + at call site to inspect the updated models. + """ + if _verbose: + workdir = os.getcwd() + "\\" + print(f"Work dir: {workdir}") + print("Using attribute files:") + print("Input:") + print(f"* {self.extold_model.filepath}") + print("Output:") + print(f"* {extfile}") + print(f"* {inifieldfile}") + print(f"* {structurefile}") + + ext_model = construct_filemodel_new_or_existing(ExtModel, extfile) + inifield_model = construct_filemodel_new_or_existing( + IniFieldModel, inifieldfile + ) + structure_model = construct_filemodel_new_or_existing( + StructureModel, structurefile + ) - return ext_model, inifield_model, structure_model + for forcing in self.extold_model.forcing: + try: + converter_class = ConverterFactory.create_converter(forcing.quantity) + new_quantity_block = converter_class.convert(forcing) + except ValueError: + # While this tool is in progress, accept that we do not convert all quantities yet. + new_quantity_block = None + + if isinstance(new_quantity_block, Boundary): + ext_model.boundary.append(new_quantity_block) + elif isinstance(new_quantity_block, Lateral): + ext_model.lateral.append(new_quantity_block) + elif isinstance(new_quantity_block, Meteo): + ext_model.meteo.append(new_quantity_block) + elif isinstance(new_quantity_block, InitialField): + inifield_model.initial.append(new_quantity_block) + elif isinstance(new_quantity_block, ParameterField): + inifield_model.parameter.append(new_quantity_block) + elif isinstance(new_quantity_block, Structure): + structure_model.structure.append(new_quantity_block) + else: + raise NotImplementedError( + f"Unsupported model class {type(new_quantity_block)} for {forcing.quantity} in " + f"{self.extold_model.filepath}." + ) + + backup_file(ext_model.filepath, backup) + ext_model.save() + + backup_file(inifield_model.filepath, backup) + inifield_model.save() + + backup_file(structure_model.filepath, backup) + structure_model.save() + + return ext_model, inifield_model, structure_model def ext_old_to_new_from_mdu( @@ -209,9 +207,10 @@ def ext_old_to_new_from_mdu( else workdir / structurefile ) + converter = ExternalForcingConverter.read_old_file(extoldfile) # The actual conversion: - extold_model, ext_model, inifield_model, structure_model = ext_old_to_new( - extoldfile, extfile, inifieldfile, structurefile, backup, postfix + extold_model, ext_model, inifield_model, structure_model = converter.update( + extfile, inifieldfile, structurefile, backup, postfix ) try: # And include the new files in the FM model: @@ -335,7 +334,8 @@ def main(args=None): args.mdufile, **outfiles, backup=backup, postfix=args.postfix ) elif args.extoldfile is not None: - ext_old_to_new(args.extoldfile, **outfiles, backup=backup, postfix=args.postfix) + converter = ExternalForcingConverter.read_old_file(args.extoldfile) + converter.update(**outfiles, backup=backup, postfix=args.postfix) elif args.dir is not None: ext_old_to_new_dir_recursive(args.dir, backup=backup, postfix=args.postfix) else: diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 1b87fb100..f1ce6b07f 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -4,7 +4,6 @@ from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( ExternalForcingConverter, - ext_old_to_new, ext_old_to_new_dir_recursive, ext_old_to_new_from_mdu, ) @@ -57,8 +56,9 @@ def test_ext_with_only_initial_contitions( new_structure_file = Path("tests/data/input/new-structure.ext") path = old_forcing_file_initial_condition["path"] - ext_model, inifield_model, structure_model = ext_old_to_new( - path, new_ext_file, new_initial_file, new_structure_file + converter = ExternalForcingConverter.read_old_file(path) + ext_model, inifield_model, structure_model = converter.update( + new_ext_file, new_initial_file, new_structure_file ) assert new_ext_file.exists() From 64dc3745469bdabaa679da961bd96a5032677106 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 28 Nov 2024 10:33:19 +0100 Subject: [PATCH 055/193] first step to move out the `construct_filemodel_new_or_existing` calling from the `update` method --- .../tools/ext_old_to_new/main_converter.py | 33 +++++++++++++------ 1 file changed, 23 insertions(+), 10 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index a6024d780..4e58ce337 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -29,12 +29,17 @@ class ExternalForcingConverter: - def __init__(self, extold_model: ExtOldModel = None): - """Initialize the converter.""" + def __init__(self, extold_model: ExtOldModel): + """Initialize the converter. + + Args: + extold_model (ExtOldModel): object with all forcing blocks. + """ self._extold_model = extold_model @property def extold_model(self): + """ExtOldModel: object with all forcing blocks.""" return self._extold_model @classmethod @@ -57,6 +62,19 @@ def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": return cls(extold_model) + @staticmethod + def create_new_models(model_type: str, path: PathOrStr) -> FileModel: + if model_type == "new_external_forcing": + model = construct_filemodel_new_or_existing(ExtModel, path) + elif model_type == "new_initial_field": + model = construct_filemodel_new_or_existing(IniFieldModel, path) + elif model_type == "new_structure": + model = construct_filemodel_new_or_existing(StructureModel, path) + else: + raise ValueError(f"Unknown model type: {model_type}") + + return model + def update( self, extfile: PathOrStr = None, @@ -70,7 +88,6 @@ def update( When the output files are existing, output will be appended to them. Args: - extoldfile (PathOrStr): Path to the old external forcing file. extfile (PathOrStr, optional): Path to the new external forcing file. inifieldfile (PathOrStr, optional): Path to the initial field file. structurefile (PathOrStr, optional): Path to the structure file. @@ -94,13 +111,9 @@ def update( print(f"* {inifieldfile}") print(f"* {structurefile}") - ext_model = construct_filemodel_new_or_existing(ExtModel, extfile) - inifield_model = construct_filemodel_new_or_existing( - IniFieldModel, inifieldfile - ) - structure_model = construct_filemodel_new_or_existing( - StructureModel, structurefile - ) + ext_model = self.create_new_models("new_external_forcing", extfile) + inifield_model = self.create_new_models("new_initial_field", inifieldfile) + structure_model = self.create_new_models("new_structure", structurefile) for forcing in self.extold_model.forcing: try: From 846342d0a1a309e203a4a0fb1a965e5df5a174d0 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 28 Nov 2024 17:03:43 +0100 Subject: [PATCH 056/193] create setter and getter properties for each model, and make abstract version of the `update` method, separate the `save` functionality --- .../tools/ext_old_to_new/main_converter.py | 123 +++++++++++------- tests/tools/test_main_converter.py | 10 +- 2 files changed, 86 insertions(+), 47 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 4e58ce337..3aa026c50 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -29,11 +29,16 @@ class ExternalForcingConverter: - def __init__(self, extold_model: ExtOldModel): + def __init__( + self, + extold_model: ExtOldModel, + ): """Initialize the converter. Args: extold_model (ExtOldModel): object with all forcing blocks. + # ini_cond_file (PathOrStr, optional): Path to the initial field file. + # structure_file (PathOrStr, optional): Path to the structure file. """ self._extold_model = extold_model @@ -42,6 +47,52 @@ def extold_model(self): """ExtOldModel: object with all forcing blocks.""" return self._extold_model + @property + def ext_model(self) -> FileModel: + """ExtOldModel: object with all forcing blocks.""" + if not hasattr(self, "_ext_model"): + raise ValueError( + "new_ext_model not set, please use the `new_ext_model` setter. to set it." + ) + return self._ext_model + + @ext_model.setter + def ext_model(self, path: PathOrStr): + """New external forcing model. + + Args: + path (PathOrStr, optional): Path to the new external forcing file. + """ + self._ext_model = construct_filemodel_new_or_existing(ExtModel, path) + + @property + def inifield_model(self) -> FileModel: + """IniFieldModel: object with all initial fields blocks.""" + if not hasattr(self, "_inifield_model"): + raise ValueError( + "inifield_model not set, please use the `inifield_model` setter. to set it." + ) + return self._inifield_model + + @inifield_model.setter + def inifield_model(self, path: PathOrStr): + self._inifield_model = construct_filemodel_new_or_existing(IniFieldModel, path) + + @property + def structure_model(self) -> FileModel: + """StructureModel: object with all structure blocks.""" + if not hasattr(self, "_structure_model"): + raise ValueError( + "structure_model not set, please use the `structure_model` setter. to set it." + ) + return self._structure_model + + @structure_model.setter + def structure_model(self, path: PathOrStr): + self._structure_model = construct_filemodel_new_or_existing( + StructureModel, path + ) + @classmethod def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": """Read a legacy D-Flow FM external forcings file (.ext) into an @@ -62,25 +113,8 @@ def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": return cls(extold_model) - @staticmethod - def create_new_models(model_type: str, path: PathOrStr) -> FileModel: - if model_type == "new_external_forcing": - model = construct_filemodel_new_or_existing(ExtModel, path) - elif model_type == "new_initial_field": - model = construct_filemodel_new_or_existing(IniFieldModel, path) - elif model_type == "new_structure": - model = construct_filemodel_new_or_existing(StructureModel, path) - else: - raise ValueError(f"Unknown model type: {model_type}") - - return model - def update( self, - extfile: PathOrStr = None, - inifieldfile: PathOrStr = None, - structurefile: PathOrStr = None, - backup: bool = False, postfix: str = "", ) -> Union[Tuple[FileModel, FileModel, FileModel], None]: """ @@ -88,11 +122,6 @@ def update( When the output files are existing, output will be appended to them. Args: - extfile (PathOrStr, optional): Path to the new external forcing file. - inifieldfile (PathOrStr, optional): Path to the initial field file. - structurefile (PathOrStr, optional): Path to the structure file. - backup (bool, optional): Create a backup of each file that will be - overwritten. postfix (str, optional): Append POSTFIX to the output filenames. Defaults to "". Returns: @@ -107,13 +136,9 @@ def update( print("Input:") print(f"* {self.extold_model.filepath}") print("Output:") - print(f"* {extfile}") - print(f"* {inifieldfile}") - print(f"* {structurefile}") - - ext_model = self.create_new_models("new_external_forcing", extfile) - inifield_model = self.create_new_models("new_initial_field", inifieldfile) - structure_model = self.create_new_models("new_structure", structurefile) + print(f"* {self.ext_model.filepath}") + print(f"* {self.inifield_model.filepath}") + print(f"* {self.structure_model.filepath}") for forcing in self.extold_model.forcing: try: @@ -124,33 +149,39 @@ def update( new_quantity_block = None if isinstance(new_quantity_block, Boundary): - ext_model.boundary.append(new_quantity_block) + self.new_ext_model.boundary.append(new_quantity_block) elif isinstance(new_quantity_block, Lateral): - ext_model.lateral.append(new_quantity_block) + self.new_ext_model.lateral.append(new_quantity_block) elif isinstance(new_quantity_block, Meteo): - ext_model.meteo.append(new_quantity_block) + self.new_ext_model.meteo.append(new_quantity_block) elif isinstance(new_quantity_block, InitialField): - inifield_model.initial.append(new_quantity_block) + self.inifield_model.initial.append(new_quantity_block) elif isinstance(new_quantity_block, ParameterField): - inifield_model.parameter.append(new_quantity_block) + self.inifield_model.parameter.append(new_quantity_block) elif isinstance(new_quantity_block, Structure): - structure_model.structure.append(new_quantity_block) + self.structure_model.structure.append(new_quantity_block) else: raise NotImplementedError( f"Unsupported model class {type(new_quantity_block)} for {forcing.quantity} in " f"{self.extold_model.filepath}." ) - backup_file(ext_model.filepath, backup) - ext_model.save() + return self.ext_model, self.inifield_model, self.structure_model - backup_file(inifield_model.filepath, backup) - inifield_model.save() + def save(self, backup: bool = True): + """Save the updated models to disk. - backup_file(structure_model.filepath, backup) - structure_model.save() + Args: + backup (bool, optional): Create a backup of each file that will be overwritten. + """ + if backup: + backup_file(self.ext_model.filepath, backup) + backup_file(self.inifield_model.filepath, backup) + backup_file(self.structure_model.filepath, backup) - return ext_model, inifield_model, structure_model + self.ext_model.save() + self.inifield_model.save() + self.structure_model.save() def ext_old_to_new_from_mdu( @@ -348,7 +379,11 @@ def main(args=None): ) elif args.extoldfile is not None: converter = ExternalForcingConverter.read_old_file(args.extoldfile) - converter.update(**outfiles, backup=backup, postfix=args.postfix) + converter.ext_model = outfiles["extfile"] + converter.inifield_model = outfiles["inifieldfile"] + converter.structure_model = outfiles["structurefile"] + converter.update(postfix=args.postfix) + converter.save(backup=backup) elif args.dir is not None: ext_old_to_new_dir_recursive(args.dir, backup=backup, postfix=args.postfix) else: diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index f1ce6b07f..a4a77f8a9 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -57,9 +57,13 @@ def test_ext_with_only_initial_contitions( path = old_forcing_file_initial_condition["path"] converter = ExternalForcingConverter.read_old_file(path) - ext_model, inifield_model, structure_model = converter.update( - new_ext_file, new_initial_file, new_structure_file - ) + + converter.inifield_model = new_initial_file + converter.structure_model = new_structure_file + converter.ext_model = new_ext_file + + ext_model, inifield_model, structure_model = converter.update() + converter.save() assert new_ext_file.exists() assert new_initial_file.exists() From 199241eda8bde4d4962233d4020cca1798b6d620 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 28 Nov 2024 23:52:17 +0100 Subject: [PATCH 057/193] reformat the converter tests --- .../tools/ext_old_to_new/main_converter.py | 6 ++++- tests/tools/test_main_converter.py | 26 +++++++++++++++---- 2 files changed, 26 insertions(+), 6 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 3aa026c50..1c05182dc 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -40,6 +40,10 @@ def __init__( # ini_cond_file (PathOrStr, optional): Path to the initial field file. # structure_file (PathOrStr, optional): Path to the structure file. """ + if not isinstance(extold_model, ExtOldModel): + raise ValueError( + f"Expected an ExtOldModel object, got {type(extold_model)} instead." + ) self._extold_model = extold_model @property @@ -52,7 +56,7 @@ def ext_model(self) -> FileModel: """ExtOldModel: object with all forcing blocks.""" if not hasattr(self, "_ext_model"): raise ValueError( - "new_ext_model not set, please use the `new_ext_model` setter. to set it." + "ext_model not set, please use the `ext_model` setter. to set it." ) return self._ext_model diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index a4a77f8a9..5a4c9954c 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,6 +1,9 @@ from pathlib import Path from typing import Dict, List +import pytest + +from hydrolib.core.dflowfm.extold.models import ExtOldModel from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( ExternalForcingConverter, @@ -48,7 +51,23 @@ def test_recursive(self, capsys, input_files_dir: Path): path = input_files_dir.joinpath("e02/f006_external_forcing") ext_old_to_new_dir_recursive(path) - def test_ext_with_only_initial_contitions( + +class TestExternalFocingConverter: + + def test_constructor_default( + self, old_forcing_file_initial_condition: Dict[str, str] + ): + path = old_forcing_file_initial_condition["path"] + ext_old_model = ExtOldModel(path) + converter = ExternalForcingConverter(ext_old_model) + assert isinstance(converter.extold_model, ExtOldModel) + + def test_wrong_extold_model(self): + ext_old_model = "wrong model" + with pytest.raises(ValueError): + ExternalForcingConverter(ext_old_model) + + def test_update_ext_with_only_initial_contitions( self, old_forcing_file_initial_condition: Dict[str, str] ): new_ext_file = Path("tests/data/input/new-external-forcing.ext") @@ -90,9 +109,6 @@ def test_ext_with_only_initial_contitions( new_ext_file.unlink() new_structure_file.unlink() - -class TestExternalFocingConverter: - def test_read_ext_old_data( self, capsys, @@ -109,7 +125,7 @@ def test_read_ext_old_data( main_converter._verbose = True converter.read_old_file(old_forcing_file) captured = capsys.readouterr() - print(captured.out) + assert captured.out.startswith( f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." ) From 78eebc3f78f224d78bea889f84c5ff7e2489d46b Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 29 Nov 2024 13:50:35 +0100 Subject: [PATCH 058/193] separate tests for the update, save, and add default paths to the models in the constructor method --- .../tools/ext_old_to_new/main_converter.py | 59 +++++++++++-- hydrolib/tools/ext_old_to_new/utils.py | 14 ++-- tests/tools/test_main_converter.py | 84 +++++++++++++++---- 3 files changed, 125 insertions(+), 32 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 1c05182dc..494391aad 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -32,28 +32,60 @@ class ExternalForcingConverter: def __init__( self, extold_model: ExtOldModel, + ext_model_path: PathOrStr = None, + inifield_model_path: PathOrStr = None, + structure_model_path: PathOrStr = None, ): """Initialize the converter. + The converter will create new external forcing, initial field and structure files in the same directory as the + old external forcing file, if no paths were given by the user for the new models. + Args: extold_model (ExtOldModel): object with all forcing blocks. - # ini_cond_file (PathOrStr, optional): Path to the initial field file. - # structure_file (PathOrStr, optional): Path to the structure file. + ext_model_path (PathOrStr, optional): Path to the new external forcing file. + inifield_model_path (PathOrStr, optional): Path to the initial field file. + structure_model_path (PathOrStr, optional): Path to the structure file. """ if not isinstance(extold_model, ExtOldModel): raise ValueError( f"Expected an ExtOldModel object, got {type(extold_model)} instead." ) self._extold_model = extold_model + rdir = extold_model.filepath.parent + + # create the new models if not provided by the user in the same directory as the old external file + path = ( + rdir.joinpath("new-external-forcing.ext") + if ext_model_path is None + else ext_model_path + ) + self._ext_model = construct_filemodel_new_or_existing(ExtModel, path) + + path = ( + rdir.joinpath("new-initial-conditions.ext") + if inifield_model_path is None + else inifield_model_path + ) + self._inifield_model = construct_filemodel_new_or_existing(IniFieldModel, path) + + path = ( + rdir.joinpath("new-structure.ext") + if structure_model_path is None + else structure_model_path + ) + self._structure_model = construct_filemodel_new_or_existing( + StructureModel, path + ) @property def extold_model(self): - """ExtOldModel: object with all forcing blocks.""" + """old external forcing model.""" return self._extold_model @property def ext_model(self) -> FileModel: - """ExtOldModel: object with all forcing blocks.""" + """New External forcing Model.""" if not hasattr(self, "_ext_model"): raise ValueError( "ext_model not set, please use the `ext_model` setter. to set it." @@ -102,11 +134,20 @@ def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": """Read a legacy D-Flow FM external forcings file (.ext) into an ExtOldModel object. + - The `read_old_file` method instantiates an ExternalForcingConverter object with an ExtOldModel object and + a default set of new external forcing, initial field and structure models. + - The new models will be created in the same directory as the old external forcing file. + - The new external forcing file will be named new-external-forcing.ext, the new initial conditions file will be + named new-initial-conditions.ext and the new structure file will be named new-structure.ext. + - However the user can change the paths to the new models by using the ``ext_model``, ``inifield_model`` and + ``structure_model`` setters. The new models will be created in the specified paths. + - the user can also set the paths to the new models using the `converter.ext_model.filepath= "mypath.ext"`. + Args: extoldfile (PathOrStr): path to the external forcings file (.ext) Returns: - ExtOldModel: object with all forcing blocks. + ExternalForcingConverter: object with the old external forcing model and new external forcing, initial field """ global _verbose @@ -178,10 +219,12 @@ def save(self, backup: bool = True): Args: backup (bool, optional): Create a backup of each file that will be overwritten. """ + # FIXME: the backup is done is the file is already there, and here is baclup is done before saving the files, + # so it is not successfuly done. if backup: - backup_file(self.ext_model.filepath, backup) - backup_file(self.inifield_model.filepath, backup) - backup_file(self.structure_model.filepath, backup) + backup_file(self.ext_model.filepath) + backup_file(self.inifield_model.filepath) + backup_file(self.structure_model.filepath) self.ext_model.save() self.inifield_model.save() diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index d183f3c30..0c97df462 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -29,21 +29,17 @@ def construct_filemodel_new_or_existing( return model -def backup_file(filepath: PathOrStr, backup: bool = True) -> None: +def backup_file(filepath: PathOrStr) -> None: """Create a backup of the given file by copying it to a new file with a '.bak' extension. Args: filepath (PathOrStr): The path to the file to back up. - backup (bool): Whether to create a backup of the file or not. """ - if not backup: - return - - source = Path(filepath) - if source.is_file(): - backup = source.with_suffix(".bak") - source.replace(backup) + filepath = Path(filepath) if isinstance(filepath, str) else filepath + if filepath.is_file(): + backup_path = filepath.with_suffix(".bak") + filepath.replace(backup_path) def construct_filepath_with_postfix(filepath: PathOrStr, postfix: str) -> Path: diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 5a4c9954c..4803a79fc 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,9 +1,13 @@ from pathlib import Path from typing import Dict, List +from unittest.mock import MagicMock import pytest +from hydrolib.core.dflowfm.ext.models import ExtModel from hydrolib.core.dflowfm.extold.models import ExtOldModel +from hydrolib.core.dflowfm.inifield.models import IniFieldModel +from hydrolib.core.dflowfm.structure.models import StructureModel from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( ExternalForcingConverter, @@ -55,38 +59,68 @@ def test_recursive(self, capsys, input_files_dir: Path): class TestExternalFocingConverter: def test_constructor_default( - self, old_forcing_file_initial_condition: Dict[str, str] + self, old_forcing_file_initial_condition: Dict[str, Path] ): + """ + Test the constructor of the ExternalForcingConverter class. The default constructor should set the extold_model + attribute to the ExtOldModel instance created from the old external forcing file. + + and create the new external forcing, initial conditions and structure models. The new external forcing file + should be named new-external-forcing.ext, the new initial conditions file should be named + new-initial-conditions.ext and the new structure file should be named new-structure.ext. + """ path = old_forcing_file_initial_condition["path"] ext_old_model = ExtOldModel(path) converter = ExternalForcingConverter(ext_old_model) assert isinstance(converter.extold_model, ExtOldModel) + rdir = ext_old_model.filepath.parent + + assert isinstance(converter.ext_model, ExtModel) + assert converter.ext_model.filepath == rdir.joinpath("new-external-forcing.ext") + assert isinstance(converter.inifield_model, IniFieldModel) + assert converter.inifield_model.filepath == rdir.joinpath( + "new-initial-conditions.ext" + ) + assert isinstance(converter.structure_model, StructureModel) + assert converter.structure_model.filepath == rdir.joinpath("new-structure.ext") def test_wrong_extold_model(self): + """ + Test the constructor of the ExternalForcingConverter class with a wrong extold_model. + """ ext_old_model = "wrong model" with pytest.raises(ValueError): ExternalForcingConverter(ext_old_model) - def test_update_ext_with_only_initial_contitions( + def test_change_models_paths_using_setters( self, old_forcing_file_initial_condition: Dict[str, str] ): + """ + Test the setter methods of the ExternalForcingConverter class. + """ + path = old_forcing_file_initial_condition["path"] + converter = ExternalForcingConverter.read_old_file(path) + new_ext_file = Path("tests/data/input/new-external-forcing.ext") new_initial_file = Path("tests/data/input/new-initial-conditions.ext") new_structure_file = Path("tests/data/input/new-structure.ext") - path = old_forcing_file_initial_condition["path"] - converter = ExternalForcingConverter.read_old_file(path) - converter.inifield_model = new_initial_file converter.structure_model = new_structure_file converter.ext_model = new_ext_file + assert converter.ext_model.filepath == new_ext_file + assert converter.inifield_model.filepath == new_initial_file + assert converter.structure_model.filepath == new_structure_file + + def test_update_ext_with_only_initial_contitions( + self, old_forcing_file_initial_condition: Dict[str, str] + ): + path = old_forcing_file_initial_condition["path"] + converter = ExternalForcingConverter.read_old_file(path) + ext_model, inifield_model, structure_model = converter.update() - converter.save() - assert new_ext_file.exists() - assert new_initial_file.exists() - assert new_structure_file.exists() # all the quantities in the old external file are initial conditions # check that all the quantities (3) were converted to initial conditions num_quantities = len(old_forcing_file_initial_condition["quantities"]) @@ -103,19 +137,39 @@ def test_update_ext_with_only_initial_contitions( str(inifield_model.initial[i].datafile.filepath) for i in range(num_quantities) ] == old_forcing_file_initial_condition["file_path"] - # clean up - # try - new_initial_file.unlink() - new_ext_file.unlink() - new_structure_file.unlink() - def test_read_ext_old_data( + def test_save(self, old_forcing_file_initial_condition: Dict[str, str]): + """ + Mock test to test only the save method of the ExternalForcingConverter class. + + - The ExtOldModel instance is mocked. + - The new models are created using the default paths. + - The save method is called to save the new models. + """ + mock_ext_old_model = MagicMock(spec=ExtOldModel) + mock_ext_old_model.filepath = old_forcing_file_initial_condition["path"] + + converter = ExternalForcingConverter(mock_ext_old_model) + converter.save() + + assert converter.ext_model.filepath.exists() + assert converter.inifield_model.filepath.exists() + assert converter.structure_model.filepath.exists() + + converter.ext_model.filepath.unlink() + converter.inifield_model.filepath.unlink() + converter.structure_model.filepath.unlink() + + def test_read_old_file( self, capsys, old_forcing_file: Path, old_forcing_file_quantities: List[str], old_forcing_comment_len: int, ): + """ + Test instantiate the class using the read_old_file class method. + """ converter = ExternalForcingConverter.read_old_file(old_forcing_file) assert len(converter.extold_model.forcing) == len(old_forcing_file_quantities) assert len(converter.extold_model.comment) == old_forcing_comment_len From 8ffb63946906573e417fe589196bd23bd8fd347d Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 08:46:15 +0100 Subject: [PATCH 059/193] fix the error of using mutables as a default value. --- hydrolib/core/dflowfm/extold/models.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index bfad64aa3..00c8a9c86 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -707,9 +707,9 @@ class ExtOldModel(ParsableFileModel): This model is typically referenced under a [FMModel][hydrolib.core.dflowfm.mdu.models.FMModel]`.external_forcing.extforcefile`. """ - comment: List[str] = HEADER.splitlines()[1:] + comment: List[str] = Field(default_factory=lambda: HEADER.splitlines()[1:]) """List[str]: The comments in the header of the external forcing file.""" - forcing: List[ExtOldForcing] = [] + forcing: List[ExtOldForcing] = Field(default_factory=list) """List[ExtOldForcing]: The external forcing/QUANTITY blocks in the external forcing file.""" @classmethod From 6539245994fc632b1b52f212b98082cb8bcb906a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 09:16:23 +0100 Subject: [PATCH 060/193] create separate test class for the update method in the converter --- .../tools/ext_old_to_new/main_converter.py | 6 +- tests/conftest.py | 10 +++ tests/tools/test_main_converter.py | 76 +++++++++++++------ 3 files changed, 64 insertions(+), 28 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 494391aad..cf99fa5d0 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -194,11 +194,11 @@ def update( new_quantity_block = None if isinstance(new_quantity_block, Boundary): - self.new_ext_model.boundary.append(new_quantity_block) + self.ext_model.boundary.append(new_quantity_block) elif isinstance(new_quantity_block, Lateral): - self.new_ext_model.lateral.append(new_quantity_block) + self.ext_model.lateral.append(new_quantity_block) elif isinstance(new_quantity_block, Meteo): - self.new_ext_model.meteo.append(new_quantity_block) + self.ext_model.meteo.append(new_quantity_block) elif isinstance(new_quantity_block, InitialField): self.inifield_model.initial.append(new_quantity_block) elif isinstance(new_quantity_block, ParameterField): diff --git a/tests/conftest.py b/tests/conftest.py index 2376e9ed6..9f3bfd7cf 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -123,6 +123,16 @@ def old_forcing_file_initial_condition() -> Dict[str, Path]: } +@pytest.fixture(scope="function") +def old_forcing_file_meteo() -> Dict[str, Path]: + return { + "path": Path("tests/data/input/old-external-meteo-only.ext"), + "quantities": ["windx", "windy"], + "file_type": ["meteoGridEqui", "meteoGridEqui"], + "file_path": ["windtest.amu", "windtest.amv"], + } + + @pytest.fixture def old_forcing_file_quantities() -> List[str]: return [ diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 4803a79fc..ba2f849b1 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -11,6 +11,7 @@ from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( ExternalForcingConverter, + _get_parser, ext_old_to_new_dir_recursive, ext_old_to_new_from_mdu, ) @@ -113,31 +114,6 @@ def test_change_models_paths_using_setters( assert converter.inifield_model.filepath == new_initial_file assert converter.structure_model.filepath == new_structure_file - def test_update_ext_with_only_initial_contitions( - self, old_forcing_file_initial_condition: Dict[str, str] - ): - path = old_forcing_file_initial_condition["path"] - converter = ExternalForcingConverter.read_old_file(path) - - ext_model, inifield_model, structure_model = converter.update() - - # all the quantities in the old external file are initial conditions - # check that all the quantities (3) were converted to initial conditions - num_quantities = len(old_forcing_file_initial_condition["quantities"]) - assert len(inifield_model.initial) == num_quantities - # no parameters or any other structures, lateral or meteo data - assert len(inifield_model.parameter) == 0 - assert len(ext_model.lateral) == 0 - assert len(ext_model.meteo) == 0 - assert len(structure_model.structure) == 0 - assert [ - inifield_model.initial[i].datafiletype for i in range(num_quantities) - ] == old_forcing_file_initial_condition["file_type"] - assert [ - str(inifield_model.initial[i].datafile.filepath) - for i in range(num_quantities) - ] == old_forcing_file_initial_condition["file_path"] - def test_save(self, old_forcing_file_initial_condition: Dict[str, str]): """ Mock test to test only the save method of the ExternalForcingConverter class. @@ -183,3 +159,53 @@ def test_read_old_file( assert captured.out.startswith( f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." ) + + +class TestUpdate: + + def test_meteo_only(self, old_forcing_file_meteo: Dict[str, str]): + path = old_forcing_file_meteo["path"] + converter = ExternalForcingConverter.read_old_file(path) + + ext_model, inifield_model, structure_model = converter.update() + + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = len(old_forcing_file_meteo["quantities"]) + assert len(ext_model.meteo) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(inifield_model.initial) == 0 + assert len(structure_model.structure) == 0 + assert [ + ext_model.meteo[i].forcingfiletype for i in range(num_quantities) + ] == old_forcing_file_meteo["file_type"] + assert [ + str(ext_model.meteo[i].forcingfile.filepath) for i in range(num_quantities) + ] == old_forcing_file_meteo["file_path"] + + def test_initial_contitions_only( + self, old_forcing_file_initial_condition: Dict[str, str] + ): + path = old_forcing_file_initial_condition["path"] + converter = ExternalForcingConverter.read_old_file(path) + + ext_model, inifield_model, structure_model = converter.update() + + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = len(old_forcing_file_initial_condition["quantities"]) + assert len(inifield_model.initial) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(ext_model.meteo) == 0 + assert len(structure_model.structure) == 0 + assert [ + inifield_model.initial[i].datafiletype for i in range(num_quantities) + ] == old_forcing_file_initial_condition["file_type"] + assert [ + str(inifield_model.initial[i].datafile.filepath) + for i in range(num_quantities) + ] == old_forcing_file_initial_condition["file_path"] From 67fd3fa8e18206bc7d296ff984518bdda07a1c76 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 09:18:19 +0100 Subject: [PATCH 061/193] test files for the update meteo test --- tests/data/input/old-external-meteo-only.ext | 74 ++++++++++++++++++++ 1 file changed, 74 insertions(+) create mode 100644 tests/data/input/old-external-meteo-only.ext diff --git a/tests/data/input/old-external-meteo-only.ext b/tests/data/input/old-external-meteo-only.ext new file mode 100644 index 000000000..8d57c2798 --- /dev/null +++ b/tests/data/input/old-external-meteo-only.ext @@ -0,0 +1,74 @@ +* QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 +* : outflowbnd, neumannbnd, qhbnd filetype=9 method=2,3 +* : salinitybnd filetype=9 method=2,3 +* : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 +* : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype, ibotlevtype filetype=4,7,10 method=4 +* : initialwaterlevel filetype=4,7,10,12 method=4,5 +* : initialtemperature filetype=4,7,10,12 method=4,5 +* : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or +* : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 +* : initialverticaltemperatureprofile filetype=9,10 method= +* : initialverticalsalinityprofile filetype=9,10 method= +* : windx, windy, windxy, rainfall_mmperday, atmosphericpressure filetype=1,2,4,7,8 method=1,2,3 +* : shiptxy, movingstationtxy filetype=1 method=1 +* : discharge_salinity_temperature_sorsin filetype=9 method=1 +* +* kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 +* FILETYPE=1 : uniform kx = 1 value 1 dim array uni +* FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 +* FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation +* FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct +* FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw +* FILETYPE=6 : curvi kx = ? bilin/findnm +* FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation +* FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations +* +* FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as +* timeseries or Fourier components or tidal constituents +* Timeseries are in files *_000i.tim, two columns: time (min) values +* Fourier components and or tidal constituents are in files *_000i.cmp, three columns +* period (min) or constituent name (e.g. M2), amplitude and phase (deg) +* If no file is specified for a node, its value will be interpolated from surrounding nodes +* If only one signal file is specified, the boundary gets a uniform signal +* For a dischargebnd, only one signal file must be specified +* +* FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields +* FILETYPE=11 : ncgrid currently not in use +* FILETYPE=12 : ncflow kx = 1 field 1 dim array triangulation +* +* METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation +* =1 : intp space and time (getval) keep 2 meteofields in memory +* =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory +* =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. +* =4 : only spatial, inside polygon +* =5 : only spatial, triangulation +* =6 : only spatial, averaging +* =7 : only spatial, index triangulation +* =8 : only spatial, smoothing +* =9 : only spatial, internal diffusion +* =10 : only initial vertical profiles +* +* OPERAND =O : Override at all points +* =+ : Add to previously specified value +* =* : Multiply with previously specified value +* =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) +* =X : MAX with prev. spec. +* =N : MIN with prev. spec. +* +* VALUE = : Offset value for this provider +* +* FACTOR = : Conversion factor for this provider +* +************************************************************************************************************** + +QUANTITY=windx +FILENAME=windtest.amu +FILETYPE=4 +METHOD=2 +OPERAND=O + +QUANTITY=windy +FILENAME=windtest.amv +FILETYPE=4 +METHOD=2 +OPERAND=O From 215c05efe70f8b78400ef523fc908412ffa75a14 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 10:01:19 +0100 Subject: [PATCH 062/193] rename the meteo_converter into converters and merge the boundary coverter to it --- .../{meteo_converter.py => converters.py} | 64 +++++++++++++++++++ 1 file changed, 64 insertions(+) rename hydrolib/tools/ext_old_to_new/{meteo_converter.py => converters.py} (53%) diff --git a/hydrolib/tools/ext_old_to_new/meteo_converter.py b/hydrolib/tools/ext_old_to_new/converters.py similarity index 53% rename from hydrolib/tools/ext_old_to_new/meteo_converter.py rename to hydrolib/tools/ext_old_to_new/converters.py index 2d25ec888..7f83f06e1 100644 --- a/hydrolib/tools/ext_old_to_new/meteo_converter.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -74,3 +74,67 @@ def convert(self, forcing: ExtOldForcing) -> Meteo: meteo_block = Meteo(**meteo_data) return meteo_block + + +class BoundaryConditionConverter(BaseConverter): + + def __init__(self): + super().__init__() + + def convert(self, forcing: ExtOldForcing) -> Meteo: + """Convert an old external forcing block with meteo data to a Meteo + forcing block suitable for inclusion in a new external forcings file. + + This function takes a forcing block from an old external forcings + file, represented by an instance of ExtOldForcing, and converts it + into a Meteo object. The Meteo object is suitable for use in new + external forcings files, adhering to the updated format and + specifications. + + Args: + forcing (ExtOldForcing): The contents of a single forcing block + in an old external forcings file. This object contains all the + necessary information, such as quantity, values, and timestamps, + required for the conversion process. + + Returns: + Meteo: A Meteo object that represents the converted forcing + block, ready to be included in a new external forcings file. The + Meteo object conforms to the new format specifications, ensuring + compatibility with updated systems and models. + + Raises: + ValueError: If the forcing block contains a quantity that is not + supported by the converter, a ValueError is raised. This ensures + that only compatible forcing blocks are processed, maintaining + data integrity and preventing errors in the conversion process. + """ + meteo_data = {} + meteo_data["quantity"] = forcing.quantity + meteo_data["forcingfile"] = forcing.filename + meteo_data["forcingfiletype"] = oldfiletype_to_forcing_file_type( + forcing.filetype + ) + meteo_data["forcingVariableName"] = forcing.varname + if forcing.sourcemask != DiskOnlyFileModel(None): + raise ValueError( + f"Attribute 'SOURCEMASK' is no longer supported, cannot " + f"convert this input. Encountered for QUANTITY=" + f"{forcing.quantity} and FILENAME={forcing.filename}." + ) + meteo_data["interpolationmethod"] = oldmethod_to_interpolation_method( + forcing.method + ) + if meteo_data["interpolationmethod"] == InterpolationMethod.averaging: + meteo_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + meteo_data["averagingrelsize"] = forcing.relativesearchcellsize + meteo_data["averagingnummin"] = forcing.nummin + meteo_data["averagingpercentile"] = forcing.percentileminmax + + meteo_data["extrapolationAllowed"] = bool(forcing.extrapolation_method) + meteo_data["extrapolationSearchRadius"] = forcing.maxsearchradius + meteo_data["operand"] = forcing.operand + + meteo_block = Meteo(**meteo_data) + + return meteo_block From 6c5590edfa2ee3f85ca1f751adafce48f9fe16da Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 10:32:01 +0100 Subject: [PATCH 063/193] move the initial_condition_converter to the converters module --- .../tools/ext_old_to_new/converter_factory.py | 5 +- hydrolib/tools/ext_old_to_new/converters.py | 71 +++++++++++++++++- .../initial_condition_converter.py | 75 ------------------- 3 files changed, 71 insertions(+), 80 deletions(-) delete mode 100644 hydrolib/tools/ext_old_to_new/initial_condition_converter.py diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index 9319360ca..322e8b77f 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -3,10 +3,11 @@ ExtOldMeteoQuantity, ) from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter -from hydrolib.tools.ext_old_to_new.initial_condition_converter import ( +from hydrolib.tools.ext_old_to_new.converters import ( InitialConditionConverter, + MeteoConverter, ) -from hydrolib.tools.ext_old_to_new.meteo_converter import MeteoConverter +# BoundaryConditionConverter def __contains__(cls, item): diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 7f83f06e1..7b29bbdf9 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,9 +1,7 @@ -from abc import abstractmethod - from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.ext.models import Meteo from hydrolib.core.dflowfm.extold.models import ExtOldForcing -from hydrolib.core.dflowfm.inifield.models import InterpolationMethod +from hydrolib.core.dflowfm.inifield.models import InitialField, InterpolationMethod from hydrolib.tools.ext_old_to_new.enum_converters import ( oldfiletype_to_forcing_file_type, oldmethod_to_averaging_type, @@ -138,3 +136,70 @@ def convert(self, forcing: ExtOldForcing) -> Meteo: meteo_block = Meteo(**meteo_data) return meteo_block + + +class InitialConditionConverter(BaseConverter): + + def __init__(self): + super().__init__() + + def convert(self, forcing: ExtOldForcing) -> InitialField: + """Convert an old external forcing block with meteo data to a Meteo + forcing block suitable for inclusion in a new external forcings file. + + This function takes a forcing block from an old external forcings + file, represented by an instance of ExtOldForcing, and converts it + into a Meteo object. The Meteo object is suitable for use in new + external forcings files, adhering to the updated format and + specifications. + + Args: + forcing (ExtOldForcing): The contents of a single forcing block + in an old external forcings file. This object contains all the + necessary information, such as quantity, values, and timestamps, + required for the conversion process. + + Returns: + Meteo: A Meteo object that represents the converted forcing + block, ready to be included in a new external forcings file. The + Meteo object conforms to the new format specifications, ensuring + compatibility with updated systems and models. + + Raises: + ValueError: If the forcing block contains a quantity that is not + supported by the converter, a ValueError is raised. This ensures + that only compatible forcing blocks are processed, maintaining + data integrity and preventing errors in the conversion process. + """ + block_data = { + "quantity": forcing.quantity, + "datafile": forcing.filename, + "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), + } + if block_data["datafiletype"] == "polygon": + block_data["value"] = forcing.value + + if forcing.sourcemask != DiskOnlyFileModel(None): + raise ValueError( + f"Attribute 'SOURCEMASK' is no longer supported, cannot " + f"convert this input. Encountered for QUANTITY=" + f"{forcing.quantity} and FILENAME={forcing.filename}." + ) + block_data["interpolationmethod"] = oldmethod_to_interpolation_method( + forcing.method + ) + if block_data["interpolationmethod"] == InterpolationMethod.averaging: + block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + block_data["averagingrelsize"] = forcing.relativesearchcellsize + block_data["averagingnummin"] = forcing.nummin + block_data["averagingpercentile"] = forcing.percentileminmax + block_data["operand"] = forcing.operand + + if hasattr(forcing, "extrapolation"): + block_data["extrapolationmethod"] = forcing.extrapolation + if hasattr(forcing, "locationtype"): + block_data["locationtype"] = forcing.locationtype + + new_block = InitialField(**block_data) + + return new_block diff --git a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py deleted file mode 100644 index 52c0fd26e..000000000 --- a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py +++ /dev/null @@ -1,75 +0,0 @@ -from hydrolib.core.basemodel import DiskOnlyFileModel -from hydrolib.core.dflowfm.extold.models import ExtOldForcing -from hydrolib.core.dflowfm.inifield.models import InitialField, InterpolationMethod -from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter -from hydrolib.tools.ext_old_to_new.enum_converters import ( - oldfiletype_to_forcing_file_type, - oldmethod_to_averaging_type, - oldmethod_to_interpolation_method, -) - - -class InitialConditionConverter(BaseConverter): - def __init__(self): - super().__init__() - - def convert(self, forcing: ExtOldForcing) -> InitialField: - """Convert an old external forcing block with meteo data to a Meteo - forcing block suitable for inclusion in a new external forcings file. - - This function takes a forcing block from an old external forcings - file, represented by an instance of ExtOldForcing, and converts it - into a Meteo object. The Meteo object is suitable for use in new - external forcings files, adhering to the updated format and - specifications. - - Args: - forcing (ExtOldForcing): The contents of a single forcing block - in an old external forcings file. This object contains all the - necessary information, such as quantity, values, and timestamps, - required for the conversion process. - - Returns: - Meteo: A Meteo object that represents the converted forcing - block, ready to be included in a new external forcings file. The - Meteo object conforms to the new format specifications, ensuring - compatibility with updated systems and models. - - Raises: - ValueError: If the forcing block contains a quantity that is not - supported by the converter, a ValueError is raised. This ensures - that only compatible forcing blocks are processed, maintaining - data integrity and preventing errors in the conversion process. - """ - block_data = { - "quantity": forcing.quantity, - "datafile": forcing.filename, - "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), - } - if block_data["datafiletype"] == "polygon": - block_data["value"] = forcing.value - - if forcing.sourcemask != DiskOnlyFileModel(None): - raise ValueError( - f"Attribute 'SOURCEMASK' is no longer supported, cannot " - f"convert this input. Encountered for QUANTITY=" - f"{forcing.quantity} and FILENAME={forcing.filename}." - ) - block_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if block_data["interpolationmethod"] == InterpolationMethod.averaging: - block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - block_data["averagingrelsize"] = forcing.relativesearchcellsize - block_data["averagingnummin"] = forcing.nummin - block_data["averagingpercentile"] = forcing.percentileminmax - block_data["operand"] = forcing.operand - - if hasattr(forcing, "extrapolation"): - block_data["extrapolationmethod"] = forcing.extrapolation - if hasattr(forcing, "locationtype"): - block_data["locationtype"] = forcing.locationtype - - new_block = InitialField(**block_data) - - return new_block From 6dc8db753070f215d87c23c1739a16a2ed65482e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 10:38:21 +0100 Subject: [PATCH 064/193] move the initial_condition_converter to the converters module --- tests/tools/test_converters.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 39c4a8c5f..7ab4af5de 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,8 +1,6 @@ from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.core.dflowfm.inifield.models import InitialField -from hydrolib.tools.ext_old_to_new.initial_condition_converter import ( - InitialConditionConverter, -) +from hydrolib.tools.ext_old_to_new.converters import InitialConditionConverter class TestConvertInitialCondition: From f7f253690b257169245a00343e6cc808fd66950f Mon Sep 17 00:00:00 2001 From: MAfarrag Date: Mon, 2 Dec 2024 09:40:12 +0000 Subject: [PATCH 065/193] autoformat: isort & black --- hydrolib/tools/ext_old_to_new/converter_factory.py | 1 + 1 file changed, 1 insertion(+) diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index 322e8b77f..f33e544eb 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -7,6 +7,7 @@ InitialConditionConverter, MeteoConverter, ) + # BoundaryConditionConverter From ed2077863e9d076c2efd76cfdf90ea0d6f61acf3 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 10:51:02 +0100 Subject: [PATCH 066/193] add the `BoundaryConditionConverter` to the converter_factory.py --- hydrolib/tools/ext_old_to_new/converter_factory.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index 322e8b77f..021d00dd8 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -1,13 +1,14 @@ from hydrolib.core.dflowfm.extold.models import ( + ExtOldBoundaryQuantity, ExtOldInitialConditionQuantity, ExtOldMeteoQuantity, ) from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter from hydrolib.tools.ext_old_to_new.converters import ( + BoundaryConditionConverter, InitialConditionConverter, MeteoConverter, ) -# BoundaryConditionConverter def __contains__(cls, item): @@ -40,7 +41,9 @@ def create_converter(quantity) -> BaseConverter: """ if __contains__(ExtOldMeteoQuantity, quantity): return MeteoConverter() - if __contains__(ExtOldInitialConditionQuantity, quantity): + elif __contains__(ExtOldInitialConditionQuantity, quantity): return InitialConditionConverter() + elif __contains__(ExtOldBoundaryQuantity, quantity): + return BoundaryConditionConverter() else: raise ValueError(f"No converter available for QUANTITY={quantity}.") From 4162b0e74f95a9fdd3889ec7c7294e9e6abd3e45 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 2 Dec 2024 18:45:19 +0100 Subject: [PATCH 067/193] create a `converters.BoundaryConditionConverter` class --- hydrolib/tools/ext_old_to_new/converters.py | 66 +++++++++------------ tests/tools/test_converters.py | 41 ++++++++++++- 2 files changed, 67 insertions(+), 40 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 7b29bbdf9..0ef49bdd5 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,5 +1,6 @@ from hydrolib.core.basemodel import DiskOnlyFileModel -from hydrolib.core.dflowfm.ext.models import Meteo +from hydrolib.core.dflowfm.bc.models import ForcingModel +from hydrolib.core.dflowfm.ext.models import Boundary, Meteo from hydrolib.core.dflowfm.extold.models import ExtOldForcing from hydrolib.core.dflowfm.inifield.models import InitialField, InterpolationMethod from hydrolib.tools.ext_old_to_new.enum_converters import ( @@ -43,13 +44,12 @@ def convert(self, forcing: ExtOldForcing) -> Meteo: that only compatible forcing blocks are processed, maintaining data integrity and preventing errors in the conversion process. """ - meteo_data = {} - meteo_data["quantity"] = forcing.quantity - meteo_data["forcingfile"] = forcing.filename - meteo_data["forcingfiletype"] = oldfiletype_to_forcing_file_type( - forcing.filetype - ) - meteo_data["forcingVariableName"] = forcing.varname + meteo_data = { + "quantity": forcing.quantity, + "forcingfile": forcing.filename, + "forcingfiletype": oldfiletype_to_forcing_file_type(forcing.filetype), + "forcingVariableName": forcing.varname, + } if forcing.sourcemask != DiskOnlyFileModel(None): raise ValueError( f"Attribute 'SOURCEMASK' is no longer supported, cannot " @@ -79,13 +79,13 @@ class BoundaryConditionConverter(BaseConverter): def __init__(self): super().__init__() - def convert(self, forcing: ExtOldForcing) -> Meteo: - """Convert an old external forcing block with meteo data to a Meteo + def convert(self, forcing: ExtOldForcing) -> Boundary: + """Convert an old external forcing block with meteo data to a boundary forcing block suitable for inclusion in a new external forcings file. This function takes a forcing block from an old external forcings file, represented by an instance of ExtOldForcing, and converts it - into a Meteo object. The Meteo object is suitable for use in new + into a Meteo object. The Boundary object is suitable for use in new external forcings files, adhering to the updated format and specifications. @@ -96,9 +96,9 @@ def convert(self, forcing: ExtOldForcing) -> Meteo: required for the conversion process. Returns: - Meteo: A Meteo object that represents the converted forcing + Boundary: A Boindary object that represents the converted forcing block, ready to be included in a new external forcings file. The - Meteo object conforms to the new format specifications, ensuring + Boundary object conforms to the new format specifications, ensuring compatibility with updated systems and models. Raises: @@ -107,35 +107,23 @@ def convert(self, forcing: ExtOldForcing) -> Meteo: that only compatible forcing blocks are processed, maintaining data integrity and preventing errors in the conversion process. """ - meteo_data = {} - meteo_data["quantity"] = forcing.quantity - meteo_data["forcingfile"] = forcing.filename - meteo_data["forcingfiletype"] = oldfiletype_to_forcing_file_type( - forcing.filetype - ) - meteo_data["forcingVariableName"] = forcing.varname - if forcing.sourcemask != DiskOnlyFileModel(None): - raise ValueError( - f"Attribute 'SOURCEMASK' is no longer supported, cannot " - f"convert this input. Encountered for QUANTITY=" - f"{forcing.quantity} and FILENAME={forcing.filename}." - ) - meteo_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if meteo_data["interpolationmethod"] == InterpolationMethod.averaging: - meteo_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - meteo_data["averagingrelsize"] = forcing.relativesearchcellsize - meteo_data["averagingnummin"] = forcing.nummin - meteo_data["averagingpercentile"] = forcing.percentileminmax + data = { + "quantity": forcing.quantity, + "nodeid": "aNodeId", + "locationFile": forcing.filename, + "forcingfile": ForcingModel(), + } + # HINT: not sure if these keywords exists in the old external files or they are new so they are not expected + # here and these following lines should be removed. - meteo_data["extrapolationAllowed"] = bool(forcing.extrapolation_method) - meteo_data["extrapolationSearchRadius"] = forcing.maxsearchradius - meteo_data["operand"] = forcing.operand + if "bndwidth1d" in forcing.__dict__: + data["bndwidth1d"] = forcing.bndwidth1d + if "bndbldepth" in forcing.__dict__: + data["bndbldepth"] = forcing.bndwidth2d - meteo_block = Meteo(**meteo_data) + new_block = Boundary(**data) - return meteo_block + return new_block class InitialConditionConverter(BaseConverter): diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 7ab4af5de..2f68443a8 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,6 +1,12 @@ +from hydrolib.core.basemodel import DiskOnlyFileModel +from hydrolib.core.dflowfm.bc.models import ForcingModel +from hydrolib.core.dflowfm.ext.models import Boundary from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.core.dflowfm.inifield.models import InitialField -from hydrolib.tools.ext_old_to_new.converters import InitialConditionConverter +from hydrolib.tools.ext_old_to_new.converters import ( + BoundaryConditionConverter, + InitialConditionConverter, +) class TestConvertInitialCondition: @@ -31,3 +37,36 @@ def test_polygon_data_file(self): assert new_quantity_block.datafiletype == "polygon" assert new_quantity_block.interpolationmethod == "constant" assert new_quantity_block.value == 0.0 + + +class TestBoundaryConverter: + + def test_default(self): + """ + Old quantity block: + + ``` + QUANTITY =waterlevelbnd + FILENAME =tfl_01.pli + FILETYPE =9 + METHOD =3 + OPERAND =O + ``` + """ + file_name = "tests/data/inputs/tfl_01.pli" + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=file_name, + filetype=9, # "Polyline" + method="3", # "Interpolate space", + operand="O", + ) + + new_quantity_block = BoundaryConditionConverter().convert(forcing) + assert isinstance(new_quantity_block, Boundary) + assert new_quantity_block.quantity == "waterlevelbnd" + assert new_quantity_block.forcingfile == ForcingModel() + assert new_quantity_block.locationfile == DiskOnlyFileModel(file_name) + assert new_quantity_block.nodeid == "aNodeId" + assert new_quantity_block.bndwidth1d is None + assert new_quantity_block.bndbldepth is None From efa5fecc170e32f18c3e2c040cd1898eae845c2b Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 09:03:58 +0100 Subject: [PATCH 068/193] fix using mutables as default value --- hydrolib/core/dflowfm/ini/models.py | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/hydrolib/core/dflowfm/ini/models.py b/hydrolib/core/dflowfm/ini/models.py index c3d9d7cf2..b0c630c73 100644 --- a/hydrolib/core/dflowfm/ini/models.py +++ b/hydrolib/core/dflowfm/ini/models.py @@ -281,7 +281,7 @@ class DataBlockINIBasedModel(INIBasedModel): datablock (Datablock): (class attribute) the actual data columns. """ - datablock: Datablock = [] + datablock: Datablock = Field(default_factory=list) _make_lists = make_list_validator("datablock") diff --git a/pyproject.toml b/pyproject.toml index 352fee456..555ae7e34 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -105,7 +105,7 @@ exclude = ''' ''' [tool.flake8] -ignore = ["E501", "W503"] +ignore = ["E501", "W503", "E731"] per-file-ignores = [ '__init__.py:F401', ] From 07a5cb8f8365c4351008c5a90f3063cfcf34a708 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 09:04:43 +0100 Subject: [PATCH 069/193] fix using mutables as default value --- hydrolib/core/dflowfm/polyfile/models.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index 8df9b9f96..41a7254ee 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -3,6 +3,8 @@ from typing import Callable, List, Optional, Sequence +from pydantic.v1 import Field + from hydrolib.core.basemodel import BaseModel, ModelSaveSettings, ParsableFileModel @@ -81,7 +83,7 @@ class PolyFile(ParsableFileModel): """Poly-file (.pol/.pli/.pliz) representation.""" has_z_values: bool = False - objects: Sequence[PolyObject] = [] + objects: Sequence[PolyObject] = Field(default_factory=list) def _serialize(self, _: dict, save_settings: ModelSaveSettings) -> None: from .serializer import write_polyfile From 0c0d2a69985d0a2079810da2c2f99f356f567f76 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 09:08:22 +0100 Subject: [PATCH 070/193] use the getattr to fetch attributes from the object --- hydrolib/tools/ext_old_to_new/converters.py | 19 +++++++++++++------ tests/tools/test_converters.py | 2 +- 2 files changed, 14 insertions(+), 7 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 0ef49bdd5..aa71815c9 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -109,17 +109,24 @@ def convert(self, forcing: ExtOldForcing) -> Boundary: """ data = { "quantity": forcing.quantity, - "nodeid": "aNodeId", - "locationFile": forcing.filename, + "locationfile": forcing.filename, "forcingfile": ForcingModel(), } # HINT: not sure if these keywords exists in the old external files or they are new so they are not expected # here and these following lines should be removed. - if "bndwidth1d" in forcing.__dict__: - data["bndwidth1d"] = forcing.bndwidth1d - if "bndbldepth" in forcing.__dict__: - data["bndbldepth"] = forcing.bndwidth2d + nodeid = getattr(forcing, "nodeid", None) + if nodeid: + data["nodeid"] = nodeid + + bndwidth1d = getattr(forcing, "bndwidth1d", None) + bndbldepth = getattr(forcing, "bndbldepth", None) + + if bndwidth1d: + data["bndwidth1d"] = bndwidth1d + + if bndbldepth: + data["bndbldepth"] = bndbldepth new_block = Boundary(**data) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 2f68443a8..3f3a0481c 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -67,6 +67,6 @@ def test_default(self): assert new_quantity_block.quantity == "waterlevelbnd" assert new_quantity_block.forcingfile == ForcingModel() assert new_quantity_block.locationfile == DiskOnlyFileModel(file_name) - assert new_quantity_block.nodeid == "aNodeId" + assert new_quantity_block.nodeid is None assert new_quantity_block.bndwidth1d is None assert new_quantity_block.bndbldepth is None From 6d19ab44419b0af2d77625fbcd436e32e794501c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 11:35:40 +0100 Subject: [PATCH 071/193] create subfolders in the test directory --- tests/dflowfm/{ => polyfile}/test_polyfile.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename tests/dflowfm/{ => polyfile}/test_polyfile.py (99%) diff --git a/tests/dflowfm/test_polyfile.py b/tests/dflowfm/polyfile/test_polyfile.py similarity index 99% rename from tests/dflowfm/test_polyfile.py rename to tests/dflowfm/polyfile/test_polyfile.py index c25308cb6..447719c51 100644 --- a/tests/dflowfm/test_polyfile.py +++ b/tests/dflowfm/polyfile/test_polyfile.py @@ -23,7 +23,7 @@ ) from hydrolib.core.dflowfm.polyfile.serializer import Serializer, write_polyfile -from ..utils import assert_files_equal, test_input_dir, test_output_dir +from tests.utils import assert_files_equal, test_input_dir, test_output_dir class TestSerializer: From 908fefa33ec46c23ad83e403e6c525b117e589be Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 11:36:13 +0100 Subject: [PATCH 072/193] get rid of relative paths --- tests/dflowfm/polyfile/test_polyfile.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/dflowfm/polyfile/test_polyfile.py b/tests/dflowfm/polyfile/test_polyfile.py index 447719c51..644074ad7 100644 --- a/tests/dflowfm/polyfile/test_polyfile.py +++ b/tests/dflowfm/polyfile/test_polyfile.py @@ -22,7 +22,6 @@ read_polyfile, ) from hydrolib.core.dflowfm.polyfile.serializer import Serializer, write_polyfile - from tests.utils import assert_files_equal, test_input_dir, test_output_dir From 69d18cc8f7c989aca85285c7b2e25b88f0954325 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 11:39:23 +0100 Subject: [PATCH 073/193] add init file to the polyline test dir --- tests/dflowfm/polyfile/__init__.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 tests/dflowfm/polyfile/__init__.py diff --git a/tests/dflowfm/polyfile/__init__.py b/tests/dflowfm/polyfile/__init__.py new file mode 100644 index 000000000..e69de29bb From f2b4c578dc024c4078e7fa65f1c93f23c5011130 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 15:59:12 +0100 Subject: [PATCH 074/193] add tests for different polyline cases (basic case, and with label) --- tests/conftest.py | 5 +++ .../polylines/polyline-no-z-no-label.pli | 4 +++ .../polylines/polyline-no-z-with-label.pli | 4 +++ .../dflowfm/polyfile/test_polyline_models.py | 35 +++++++++++++++++++ 4 files changed, 48 insertions(+) create mode 100644 tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-no-label.pli create mode 100644 tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli create mode 100644 tests/dflowfm/polyfile/test_polyline_models.py diff --git a/tests/conftest.py b/tests/conftest.py index 9f3bfd7cf..9c03c2fcd 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -84,6 +84,11 @@ def input_files_dir() -> Path: return Path("tests/data/input") +@pytest.fixture +def polylines_dir() -> Path: + return Path("tests/data/input/dflowfm_individual_files/polylines") + + @pytest.fixture def output_files_dir() -> Path: return Path("tests/data/output") diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-no-label.pli b/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-no-label.pli new file mode 100644 index 000000000..ae34f8e82 --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-no-label.pli @@ -0,0 +1,4 @@ +L1 + 2 2 + -80 -50 + -80 550 diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli b/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli new file mode 100644 index 000000000..bbf15028b --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli @@ -0,0 +1,4 @@ +tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000e #zee + 0.00000000000000000 2.00000000000000000e #zee diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py new file mode 100644 index 000000000..8ded5535a --- /dev/null +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -0,0 +1,35 @@ +from pathlib import Path + +import pytest + +from hydrolib.core.dflowfm.polyfile.models import PolyFile + + +def test_with_label(polylines_dir: Path): + """ + The test check a simple 2*2 polyline file with a label + Now the polyfile.parser does not support having any labels in the file. + So the test should raise a ValueError. + tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000e #zee + 0.00000000000000000 2.00000000000000000e #zee + """ + path = polylines_dir.joinpath("polyline-no-z-with-label.pli") + with pytest.raises(ValueError): + PolyFile(path) + + +def test_without_z(polylines_dir: Path): + """ + The test check a simple 2*2 polyline file without z values. + L1 + 2 2 + -80 -50 + -80 550 + """ + path = polylines_dir.joinpath("polyline-no-z-no-label.pli") + polyline = PolyFile(path) + assert polyline.has_z_values is False + assert polyline.filepath == path + assert polyline.save_location == path.absolute() From 532245686b69dd94a2598584ec70daf9e49e6ede Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 3 Dec 2024 16:50:12 +0100 Subject: [PATCH 075/193] add tests for different polyline cases (basic case, and with label) --- .../polylines/polyline-no-z-with-label.pli | 4 +- .../polylines/polyline-with-z-no-label.pli | 4 ++ .../polylines/polyline-with-z-no-label.pliz | 4 ++ .../dflowfm/polyfile/test_polyline_models.py | 51 ++++++++++++++++--- 4 files changed, 55 insertions(+), 8 deletions(-) create mode 100644 tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pli create mode 100644 tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pliz diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli b/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli index bbf15028b..b70d9fe7a 100644 --- a/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli +++ b/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli @@ -1,4 +1,4 @@ tfl_01 2 2 - 0.00000000000000000 0.00000000000000000e #zee - 0.00000000000000000 2.00000000000000000e #zee + 0.00000000000000000 0.00000000000000000 #zee + 0.00000000000000000 2.00000000000000000 #zee diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pli b/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pli new file mode 100644 index 000000000..0b283e385 --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pli @@ -0,0 +1,4 @@ +tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pliz b/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pliz new file mode 100644 index 000000000..0b283e385 --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pliz @@ -0,0 +1,4 @@ +tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index 8ded5535a..c0b52b6f8 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -2,22 +2,24 @@ import pytest -from hydrolib.core.dflowfm.polyfile.models import PolyFile +from hydrolib.core.dflowfm.polyfile.models import Point, PolyFile def test_with_label(polylines_dir: Path): """ The test check a simple 2*2 polyline file with a label Now the polyfile.parser does not support having any labels in the file. - So the test should raise a ValueError. + parser will ignore the label and read the file as a normal polyline file. tfl_01 2 2 - 0.00000000000000000 0.00000000000000000e #zee - 0.00000000000000000 2.00000000000000000e #zee + 0.00000000000000000 0.00000000000000000 #zee + 0.00000000000000000 2.00000000000000000 #zee """ path = polylines_dir.joinpath("polyline-no-z-with-label.pli") - with pytest.raises(ValueError): - PolyFile(path) + polyline = PolyFile(path) + assert polyline.has_z_values is False + assert polyline.filepath == path + assert polyline.save_location == path.absolute() def test_without_z(polylines_dir: Path): @@ -33,3 +35,40 @@ def test_without_z(polylines_dir: Path): assert polyline.has_z_values is False assert polyline.filepath == path assert polyline.save_location == path.absolute() + points = polyline.objects[0].points + assert points[0] == Point(x=-80, y=-50, z=None, data=[]) + assert points[1] == Point(x=-80, y=550, z=None, data=[]) + + +def test_with_z_and_pli_extension(polylines_dir: Path): + """ + The test check a 2*2 polyline file with z values but the extension is pli not pliz. + the parser will ignore the z values and read the file as a normal polyline file. + tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 + """ + path = polylines_dir.joinpath("polyline-with-z-no-label.pli") + polyline = PolyFile(path) + assert polyline.has_z_values is False + assert polyline.filepath == path + assert polyline.save_location == path.absolute() + points = polyline.objects[0].points + assert points[0] == Point(x=0, y=0, z=None, data=[]) + assert points[1] == Point(x=0, y=2, z=None, data=[]) + + +def test_with_z_and_pliz_extension(polylines_dir: Path): + """ + The test check a 2*2 polyline file with z values, the extension is correct but the dimensions are 2*2. + not 2*3 + the parser only reads the length of the dimensions in the second line and ignores the z values. + tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 + """ + path = polylines_dir.joinpath("polyline-with-z-no-label.pliz") + with pytest.raises(ValueError): + PolyFile(path) From cd9389b1d52dd58e27a3273949670cc0cae6bd4e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 4 Dec 2024 14:03:25 +0100 Subject: [PATCH 076/193] split the test_ext.py to a separate testing modules --- tests/dflowfm/extold/__init__.py | 0 tests/dflowfm/extold/test_boundary.py | 164 +++++++++++++++++++++++++ tests/dflowfm/{ => extold}/test_ext.py | 164 ------------------------- 3 files changed, 164 insertions(+), 164 deletions(-) create mode 100644 tests/dflowfm/extold/__init__.py create mode 100644 tests/dflowfm/extold/test_boundary.py rename tests/dflowfm/{ => extold}/test_ext.py (78%) diff --git a/tests/dflowfm/extold/__init__.py b/tests/dflowfm/extold/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/tests/dflowfm/extold/test_boundary.py b/tests/dflowfm/extold/test_boundary.py new file mode 100644 index 000000000..622447d7a --- /dev/null +++ b/tests/dflowfm/extold/test_boundary.py @@ -0,0 +1,164 @@ +from pathlib import Path + +import pytest + +from hydrolib.core.dflowfm.bc.models import ForcingModel +from hydrolib.core.dflowfm.ext.models import Boundary + + +class TestBoundary: + """Class to test all methods contained in the + hydrolib.core.dflowfm.ext.models.Boundary class""" + + def test_given_args_expected_values(self): + # 1. Explicit declaration of parameters (to validate keys as they are written) + dict_values = { + "quantity": "42", + "nodeid": "aNodeId", + "locationfile": Path("aLocationFile"), + "forcingfile": ForcingModel(), + "bndwidth1d": 4.2, + "bndbldepth": 2.4, + } + + # 2. Create boundary. + created_boundary = Boundary(**dict_values) + + # 3. Verify boundary values as expected. + created_boundary_dict = created_boundary.dict() + + compare_data = dict(dict_values) + expected_location_path = compare_data.pop("locationfile") + + for key, value in compare_data.items(): + assert created_boundary_dict[key] == value + + assert ( + created_boundary_dict["locationfile"]["filepath"] == expected_location_path + ) + + def test_given_args_as_alias_expected_values(self): + # 1. Explicit declaration of parameters (to validate keys as they are written) + dict_values = { + "quantity": "42", + "nodeid": "aNodeId", + "locationfile": Path("aLocationFile"), + "forcingFile": ForcingModel(), + "bndWidth1D": 4.2, + "bndBlDepth": 2.4, + } + + # 2. Create boundary. + created_boundary = Boundary(**dict_values) + boundary_as_dict = created_boundary.dict() + # 3. Verify boundary values as expected. + assert boundary_as_dict["quantity"] == dict_values["quantity"] + assert boundary_as_dict["nodeid"] == dict_values["nodeid"] + assert ( + boundary_as_dict["locationfile"]["filepath"] == dict_values["locationfile"] + ) + assert boundary_as_dict["forcingfile"] == dict_values["forcingFile"] + assert boundary_as_dict["bndwidth1d"] == dict_values["bndWidth1D"] + assert boundary_as_dict["bndbldepth"] == dict_values["bndBlDepth"] + + class TestValidateRootValidator: + """ + Test class to validate the paradigms when evaluating + check_nodeid_or_locationfile_present. + """ + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(), id="No entries."), + pytest.param( + dict(nodeid=None, locationfile=None), id="Entries are None." + ), + pytest.param(dict(nodeid="", locationfile=""), id="Entries are Empty."), + ], + ) + def test_given_no_values_raises_valueerror(self, dict_values: dict): + with pytest.raises(ValueError) as exc_mssg: + Boundary.check_nodeid_or_locationfile_present(dict_values) + + # 3. Verify final expectations. + expected_error_mssg = ( + "Either nodeId or locationFile fields should be specified." + ) + assert str(exc_mssg.value) == expected_error_mssg + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), + pytest.param( + dict(locationfile=Path("aLocationFile")), + id="LocationFile present.", + ), + pytest.param( + dict(nodeid="bNodeId", locationfile="bLocationFile"), + id="Both present.", + ), + ], + ) + def test_given_dict_values_doesnot_raise(self, dict_values: dict): + return_values = Boundary.check_nodeid_or_locationfile_present(dict_values) + assert dict_values == return_values + + class TestValidateFromCtor: + """ + Test class to validate the validation during default object creation. + """ + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(), id="No entries."), + pytest.param( + dict(nodeid=None, locationfile=None), id="Entries are None." + ), + pytest.param(dict(nodeid=""), id="NodeId is empty."), + ], + ) + def test_given_no_values_raises_valueerror(self, dict_values: dict): + required_values = dict(quantity="aQuantity") + test_values = {**dict_values, **required_values} + with pytest.raises(ValueError) as exc_mssg: + Boundary(**test_values) + + # 3. Verify final expectations. + expected_error_mssg = ( + "Either nodeId or locationFile fields should be specified." + ) + assert expected_error_mssg in str(exc_mssg.value) + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), + pytest.param( + dict(locationfile=Path("aLocationFile")), + id="LocationFile present.", + ), + pytest.param( + dict(nodeid="bNodeId", locationfile=Path("bLocationFile")), + id="Both present.", + ), + ], + ) + def test_given_dict_values_doesnot_raise(self, dict_values: dict): + required_values = dict(quantity="aQuantity", forcingfile=ForcingModel()) + test_values = {**dict_values, **required_values} + created_boundary = Boundary(**test_values) + + expected_locationfile = test_values.pop("locationfile", None) + + for key, value in test_values.items(): + if key == "forcing_file": + value = value.dict() + assert created_boundary.dict()[key] == value + + assert ( + created_boundary.dict()["locationfile"]["filepath"] + == expected_locationfile + ) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/extold/test_ext.py similarity index 78% rename from tests/dflowfm/test_ext.py rename to tests/dflowfm/extold/test_ext.py index f2248f65d..8cef1dc3e 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/extold/test_ext.py @@ -8,7 +8,6 @@ from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import Constant, ForcingModel, RealTime from hydrolib.core.dflowfm.ext.models import ( - Boundary, ExtModel, Lateral, Meteo, @@ -432,169 +431,6 @@ def test_dischargeforcings_fromfile(self): assert isinstance(m.lateral[3].discharge.forcing[0], Constant) assert m.lateral[3].discharge.forcing[0].name == "10637" - class TestBoundary: - """Class to test all methods contained in the - hydrolib.core.dflowfm.ext.models.Boundary class""" - - def test_given_args_expected_values(self): - # 1. Explicit declaration of parameters (to validate keys as they are written) - dict_values = { - "quantity": "42", - "nodeid": "aNodeId", - "locationfile": Path("aLocationFile"), - "forcingfile": ForcingModel(), - "bndwidth1d": 4.2, - "bndbldepth": 2.4, - } - - # 2. Create boundary. - created_boundary = Boundary(**dict_values) - - # 3. Verify boundary values as expected. - created_boundary_dict = created_boundary.dict() - - compare_data = dict(dict_values) - expected_location_path = compare_data.pop("locationfile") - - for key, value in compare_data.items(): - assert created_boundary_dict[key] == value - - assert ( - created_boundary_dict["locationfile"]["filepath"] - == expected_location_path - ) - - def test_given_args_as_alias_expected_values(self): - # 1. Explicit declaration of parameters (to validate keys as they are written) - dict_values = { - "quantity": "42", - "nodeid": "aNodeId", - "locationfile": Path("aLocationFile"), - "forcingFile": ForcingModel(), - "bndWidth1D": 4.2, - "bndBlDepth": 2.4, - } - - # 2. Create boundary. - created_boundary = Boundary(**dict_values) - boundary_as_dict = created_boundary.dict() - # 3. Verify boundary values as expected. - assert boundary_as_dict["quantity"] == dict_values["quantity"] - assert boundary_as_dict["nodeid"] == dict_values["nodeid"] - assert ( - boundary_as_dict["locationfile"]["filepath"] - == dict_values["locationfile"] - ) - assert boundary_as_dict["forcingfile"] == dict_values["forcingFile"] - assert boundary_as_dict["bndwidth1d"] == dict_values["bndWidth1D"] - assert boundary_as_dict["bndbldepth"] == dict_values["bndBlDepth"] - - class TestValidateRootValidator: - """ - Test class to validate the paradigms when evaluating - check_nodeid_or_locationfile_present. - """ - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(), id="No entries."), - pytest.param( - dict(nodeid=None, locationfile=None), id="Entries are None." - ), - pytest.param( - dict(nodeid="", locationfile=""), id="Entries are Empty." - ), - ], - ) - def test_given_no_values_raises_valueerror(self, dict_values: dict): - with pytest.raises(ValueError) as exc_mssg: - Boundary.check_nodeid_or_locationfile_present(dict_values) - - # 3. Verify final expectations. - expected_error_mssg = ( - "Either nodeId or locationFile fields should be specified." - ) - assert str(exc_mssg.value) == expected_error_mssg - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), - pytest.param( - dict(locationfile=Path("aLocationFile")), - id="LocationFile present.", - ), - pytest.param( - dict(nodeid="bNodeId", locationfile="bLocationFile"), - id="Both present.", - ), - ], - ) - def test_given_dict_values_doesnot_raise(self, dict_values: dict): - return_values = Boundary.check_nodeid_or_locationfile_present( - dict_values - ) - assert dict_values == return_values - - class TestValidateFromCtor: - """ - Test class to validate the validation during default object creation. - """ - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(), id="No entries."), - pytest.param( - dict(nodeid=None, locationfile=None), id="Entries are None." - ), - pytest.param(dict(nodeid=""), id="NodeId is empty."), - ], - ) - def test_given_no_values_raises_valueerror(self, dict_values: dict): - required_values = dict(quantity="aQuantity") - test_values = {**dict_values, **required_values} - with pytest.raises(ValueError) as exc_mssg: - Boundary(**test_values) - - # 3. Verify final expectations. - expected_error_mssg = ( - "Either nodeId or locationFile fields should be specified." - ) - assert expected_error_mssg in str(exc_mssg.value) - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), - pytest.param( - dict(locationfile=Path("aLocationFile")), - id="LocationFile present.", - ), - pytest.param( - dict(nodeid="bNodeId", locationfile=Path("bLocationFile")), - id="Both present.", - ), - ], - ) - def test_given_dict_values_doesnot_raise(self, dict_values: dict): - required_values = dict(quantity="aQuantity", forcingfile=ForcingModel()) - test_values = {**dict_values, **required_values} - created_boundary = Boundary(**test_values) - - expected_locationfile = test_values.pop("locationfile", None) - - for key, value in test_values.items(): - if key == "forcing_file": - value = value.dict() - assert created_boundary.dict()[key] == value - - assert ( - created_boundary.dict()["locationfile"]["filepath"] - == expected_locationfile - ) - class TestExtModel: """Class to test all methods contained in the From a01f8fd68a9b4694e1d1c5c96b82edd7f40947a6 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 4 Dec 2024 14:46:37 +0100 Subject: [PATCH 077/193] fix error in Boundary object instantiation in the `BoundaryConditionConverter` --- hydrolib/tools/ext_old_to_new/converters.py | 17 +---------------- tests/tools/test_converters.py | 2 +- 2 files changed, 2 insertions(+), 17 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index aa71815c9..0d6108f11 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -109,24 +109,9 @@ def convert(self, forcing: ExtOldForcing) -> Boundary: """ data = { "quantity": forcing.quantity, - "locationfile": forcing.filename, + "locationfile": forcing.filename.filepath, "forcingfile": ForcingModel(), } - # HINT: not sure if these keywords exists in the old external files or they are new so they are not expected - # here and these following lines should be removed. - - nodeid = getattr(forcing, "nodeid", None) - if nodeid: - data["nodeid"] = nodeid - - bndwidth1d = getattr(forcing, "bndwidth1d", None) - bndbldepth = getattr(forcing, "bndbldepth", None) - - if bndwidth1d: - data["bndwidth1d"] = bndwidth1d - - if bndbldepth: - data["bndbldepth"] = bndbldepth new_block = Boundary(**data) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 3f3a0481c..01a1a0e30 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -53,7 +53,7 @@ def test_default(self): OPERAND =O ``` """ - file_name = "tests/data/inputs/tfl_01.pli" + file_name = "tests/data/input/boundary-conditions/tfl_01.pli" forcing = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename=file_name, From 0a175621adfb00422cea306ed55b1eb04061480a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 4 Dec 2024 15:22:02 +0100 Subject: [PATCH 078/193] test the `ext.models.boundary` with an existing polyline --- tests/dflowfm/extold/test_boundary.py | 23 +++++++++++++++++++++-- 1 file changed, 21 insertions(+), 2 deletions(-) diff --git a/tests/dflowfm/extold/test_boundary.py b/tests/dflowfm/extold/test_boundary.py index 622447d7a..2658bbf1b 100644 --- a/tests/dflowfm/extold/test_boundary.py +++ b/tests/dflowfm/extold/test_boundary.py @@ -1,14 +1,33 @@ +""" +Test all methods contained in the +hydrolib.core.dflowfm.ext.models.Boundary class +""" + from pathlib import Path import pytest +from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary +from hydrolib.core.dflowfm.polyfile.models import PolyFile class TestBoundary: - """Class to test all methods contained in the - hydrolib.core.dflowfm.ext.models.Boundary class""" + + def test_existing_file(self): + polyline = "tests/data/input/boundary-conditions/tfl_01.pli" + data = { + "quantity": "waterlevelbnd", + "locationfile": polyline, + "forcingfile": ForcingModel(), + } + boundary_block = Boundary(**data) + assert boundary_block.locationfile == DiskOnlyFileModel(Path(polyline)) + assert boundary_block.quantity == "waterlevelbnd" + assert boundary_block.forcingfile == ForcingModel() + assert boundary_block.bndwidth1d is None + assert boundary_block.bndbldepth is None def test_given_args_expected_values(self): # 1. Explicit declaration of parameters (to validate keys as they are written) From 9ff2e912ecdc6ca23d9edabd5a4076e379ea842f Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 4 Dec 2024 15:40:58 +0100 Subject: [PATCH 079/193] test the `ExternalForcingConverter.update` with only boundary condition data --- tests/conftest.py | 31 +++++ .../old-external-boundary_condition_only.ext | 118 ++++++++++++++++++ tests/tools/test_main_converter.py | 25 +++- 3 files changed, 173 insertions(+), 1 deletion(-) create mode 100644 tests/data/input/boundary-conditions/old-external-boundary_condition_only.ext diff --git a/tests/conftest.py b/tests/conftest.py index 9c03c2fcd..7874692f0 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -138,6 +138,37 @@ def old_forcing_file_meteo() -> Dict[str, Path]: } +@pytest.fixture(scope="function") +def old_forcing_file_boundary() -> Dict[str, Path]: + return { + "path": Path( + "tests/data/input/boundary-conditions/old-external-boundary_condition_only.ext" + ), + "quantities": [ + "waterlevelbnd", + "dischargebnd", + "velocitybnd", + "tangentialvelocitybnd", + "neumannbnd", + "riemannbnd", + "outflowbnd", + "qhbnd", + "salinitybnd", + ], + "locationfile": [ + "tfl_01.pli", + "left01.pli", + "vel01.pli", + "tanvelN.pli", + "right01.pli", + "left01.pli", + "right01.pli", + "right01.pli", + "tfl_02_sal.pli", + ], + } + + @pytest.fixture def old_forcing_file_quantities() -> List[str]: return [ diff --git a/tests/data/input/boundary-conditions/old-external-boundary_condition_only.ext b/tests/data/input/boundary-conditions/old-external-boundary_condition_only.ext new file mode 100644 index 000000000..f3e95d61c --- /dev/null +++ b/tests/data/input/boundary-conditions/old-external-boundary_condition_only.ext @@ -0,0 +1,118 @@ +* QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 +* : outflowbnd, neumannbnd, qhbnd filetype=9 method=2,3 +* : salinitybnd filetype=9 method=2,3 +* : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 +* : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype, ibotlevtype filetype=4,7,10 method=4 +* : initialwaterlevel filetype=4,7,10,12 method=4,5 +* : initialtemperature filetype=4,7,10,12 method=4,5 +* : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or +* : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 +* : initialverticaltemperatureprofile filetype=9,10 method= +* : initialverticalsalinityprofile filetype=9,10 method= +* : windx, windy, windxy, rainfall_mmperday, atmosphericpressure filetype=1,2,4,7,8 method=1,2,3 +* : shiptxy, movingstationtxy filetype=1 method=1 +* : discharge_salinity_temperature_sorsin filetype=9 method=1 +* +* kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 +* FILETYPE=1 : uniform kx = 1 value 1 dim array uni +* FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 +* FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation +* FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct +* FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw +* FILETYPE=6 : curvi kx = ? bilin/findnm +* FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation +* FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations +* +* FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as +* timeseries or Fourier components or tidal constituents +* Timeseries are in files *_000i.tim, two columns: time (min) values +* Fourier components and or tidal constituents are in files *_000i.cmp, three columns +* period (min) or constituent name (e.g. M2), amplitude and phase (deg) +* If no file is specified for a node, its value will be interpolated from surrounding nodes +* If only one signal file is specified, the boundary gets a uniform signal +* For a dischargebnd, only one signal file must be specified +* +* FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields +* FILETYPE=11 : ncgrid currently not in use +* FILETYPE=12 : ncflow kx = 1 field 1 dim array triangulation +* +* METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation +* =1 : intp space and time (getval) keep 2 meteofields in memory +* =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory +* =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. +* =4 : only spatial, inside polygon +* =5 : only spatial, triangulation +* =6 : only spatial, averaging +* =7 : only spatial, index triangulation +* =8 : only spatial, smoothing +* =9 : only spatial, internal diffusion +* =10 : only initial vertical profiles +* +* OPERAND =O : Override at all points +* =+ : Add to previously specified value +* =* : Multiply with previously specified value +* =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) +* =X : MAX with prev. spec. +* =N : MIN with prev. spec. +* +* VALUE = : Offset value for this provider +* +* FACTOR = : Conversion factor for this provider +* +************************************************************************************************************** + +QUANTITY =waterlevelbnd +FILENAME =tfl_01.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + + +QUANTITY =dischargebnd +FILENAME =left01.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + +QUANTITY =velocitybnd +FILENAME =vel01.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + +QUANTITY =tangentialvelocitybnd +FILENAME =tanvelN.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + +QUANTITY =neumannbnd +FILENAME =right01.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + +QUANTITY =riemannbnd +FILENAME =left01.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + + +QUANTITY =outflowbnd +FILENAME =right01.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + +QUANTITY =qhbnd +FILENAME =right01.pli +FILETYPE =9 +METHOD =3 +OPERAND =O + +QUANTITY =salinitybnd +FILENAME =tfl_02_sal.pli +FILETYPE =9 +METHOD =3 +OPERAND =O diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index ba2f849b1..ccd0e0f52 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -11,7 +11,6 @@ from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( ExternalForcingConverter, - _get_parser, ext_old_to_new_dir_recursive, ext_old_to_new_from_mdu, ) @@ -209,3 +208,27 @@ def test_initial_contitions_only( str(inifield_model.initial[i].datafile.filepath) for i in range(num_quantities) ] == old_forcing_file_initial_condition["file_path"] + + def test_boundary_only(self, old_forcing_file_boundary: Dict[str, str]): + """ + The old external forcing file contains only 9 boundary condition quantities all with polyline location files + and no forcing files. The update method should convert all the quantities to boundary conditions. + """ + path = old_forcing_file_boundary["path"] + converter = ExternalForcingConverter.read_old_file(path) + + ext_model, inifield_model, structure_model = converter.update() + + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = len(old_forcing_file_boundary["quantities"]) + assert len(ext_model.boundary) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(ext_model.meteo) == 0 + assert len(structure_model.structure) == 0 + quantities = ext_model.boundary + assert [ + str(quantities[i].locationfile.filepath) for i in range(num_quantities) + ] == old_forcing_file_boundary["locationfile"] From 4c5bfb26668199c463c5a4c8d9ae5d76a31dfeba Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 4 Dec 2024 19:38:42 +0100 Subject: [PATCH 080/193] replace float point comparison with np.isclose --- tests/dflowfm/test_inifield.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/dflowfm/test_inifield.py b/tests/dflowfm/test_inifield.py index 695b8688c..e7e4ae017 100644 --- a/tests/dflowfm/test_inifield.py +++ b/tests/dflowfm/test_inifield.py @@ -258,7 +258,7 @@ def test_default_values(self): assert initial_conditions.interpolationmethod is None assert initial_conditions.operand == "O" assert initial_conditions.averagingtype is "mean" - assert initial_conditions.averagingrelsize == 1.01 + assert np.isclose(initial_conditions.averagingrelsize, 1.01) assert initial_conditions.averagingnummin == 1 assert initial_conditions.extrapolationmethod is False assert initial_conditions.locationtype is "all" From 13dead8d0e2db1e96b93649a7fc57b2b88c4f0a0 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 4 Dec 2024 19:42:17 +0100 Subject: [PATCH 081/193] replace float point comparison with np.isclose --- tests/tools/test_converters.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 01a1a0e30..79ab743af 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,3 +1,5 @@ +import numpy as np + from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary @@ -36,7 +38,7 @@ def test_polygon_data_file(self): new_quantity_block = InitialConditionConverter().convert(forcing) assert new_quantity_block.datafiletype == "polygon" assert new_quantity_block.interpolationmethod == "constant" - assert new_quantity_block.value == 0.0 + assert np.isclose(new_quantity_block.value, 0.0) class TestBoundaryConverter: From 558739046ddd03c986e52d3023b7e3eaee8fe209 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 5 Dec 2024 11:44:57 +0100 Subject: [PATCH 082/193] remove unused imported function --- tests/dflowfm/extold/test_boundary.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/dflowfm/extold/test_boundary.py b/tests/dflowfm/extold/test_boundary.py index 2658bbf1b..ac99bc49b 100644 --- a/tests/dflowfm/extold/test_boundary.py +++ b/tests/dflowfm/extold/test_boundary.py @@ -10,7 +10,6 @@ from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary -from hydrolib.core.dflowfm.polyfile.models import PolyFile class TestBoundary: From 5211d962d7f196622537c425cb4c272a1748b2db Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 5 Dec 2024 11:56:21 +0100 Subject: [PATCH 083/193] add a pull request template --- .github/pull_request_template.md | 35 ++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 .github/pull_request_template.md diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md new file mode 100644 index 000000000..d2dae6651 --- /dev/null +++ b/.github/pull_request_template.md @@ -0,0 +1,35 @@ +# Description + +- Please include a summary of the change and which issue is fixed. +- Please also include relevant motivation and context. +- List any dependencies that are required for this change. + + +- Fixes # (issue) +## Type of change + +Check relevant points. + +- [ ] Bug fix (non-breaking change which fixes an issue) +- [ ] New feature (non-breaking change which adds functionality) +- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected) +- [ ] This change requires a documentation update + +# How Has This Been Tested? + +- Please describe the tests that you ran to verify your changes. +- Provide instructions so we can reproduce. +- Please also list any relevant details for your test configuration + +- [ ] Test A +- [ ] Test B + +# Checklist: + +- [ ] updated version number in setup.py/pyproject.toml/environment.yml. +- [ ] updated the lock file. +- [ ] added changes to History.rst. +- [ ] updated the latest version in README file. +- [ ] I have added tests that prove my fix is effective or that my feature works. +- [ ] New and existing unit tests pass locally with my changes. +- [ ] documentation are updated. From 1726a38c2d764acae78dd4ca7e03b693d7b83ec3 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 5 Dec 2024 14:11:31 +0100 Subject: [PATCH 084/193] correct test folder name from extold to ext --- tests/dflowfm/{extold => ext}/__init__.py | 0 tests/dflowfm/{extold => ext}/test_boundary.py | 0 tests/dflowfm/{extold => ext}/test_ext.py | 0 3 files changed, 0 insertions(+), 0 deletions(-) rename tests/dflowfm/{extold => ext}/__init__.py (100%) rename tests/dflowfm/{extold => ext}/test_boundary.py (100%) rename tests/dflowfm/{extold => ext}/test_ext.py (100%) diff --git a/tests/dflowfm/extold/__init__.py b/tests/dflowfm/ext/__init__.py similarity index 100% rename from tests/dflowfm/extold/__init__.py rename to tests/dflowfm/ext/__init__.py diff --git a/tests/dflowfm/extold/test_boundary.py b/tests/dflowfm/ext/test_boundary.py similarity index 100% rename from tests/dflowfm/extold/test_boundary.py rename to tests/dflowfm/ext/test_boundary.py diff --git a/tests/dflowfm/extold/test_ext.py b/tests/dflowfm/ext/test_ext.py similarity index 100% rename from tests/dflowfm/extold/test_ext.py rename to tests/dflowfm/ext/test_ext.py From d0b183eb5f5888f94fb85283009128090d89bf15 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 5 Dec 2024 14:29:37 +0100 Subject: [PATCH 085/193] optimize the `ext.models.Boundary.forcing` property to have one return statement at the end of the property. --- hydrolib/core/dflowfm/ext/models.py | 27 +++++++++++++-------------- 1 file changed, 13 insertions(+), 14 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 7f4b7e59c..1836149de 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -108,20 +108,19 @@ def forcing(self) -> ForcingBase: Returns: ForcingBase: The corresponding forcing data. None when this boundary does not have a forcing file or when the data cannot be found. """ - - if self.forcingfile is None: - return None - - for forcing in self.forcingfile.forcing: - - if self.nodeid != forcing.name: - continue - - for quantity in forcing.quantityunitpair: - if quantity.quantity.startswith(self.quantity): - return forcing - - return None + result = None + if self.forcingfile is not None: + for forcing in self.forcingfile.forcing: + + if self.nodeid == forcing.name: + if any( + quantity.quantity.startswith(self.quantity) + for quantity in forcing.quantityunitpair + ): + result = forcing + break + + return result class Lateral(INIBasedModel): From d68e75dd41ce41669836519d92f4b900c88b6080 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 6 Dec 2024 15:32:50 +0100 Subject: [PATCH 086/193] test the `ExtOldParametersQuantity` class --- hydrolib/core/dflowfm/extold/models.py | 15 ++++++++++ tests/conftest.py | 41 ++++++++++++++++---------- tests/dflowfm/test_extold.py | 12 ++++++++ 3 files changed, 53 insertions(+), 15 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 00c8a9c86..438477941 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -156,6 +156,21 @@ class ExtOldBoundaryQuantity(StrEnum): """Discharge-water level dependency""" +class ExtOldParametersQuantity(StrEnum): + """Enum class containing the valid values for the Spatial parameter category + of the external forcings. + + for more details check D-Flow FM User Manual 1D2D, Chapter D.3.1, Table D.2 + https://content.oss.deltares.nl/delft3d/D-Flow_FM_User_Manual_1D2D.pdf + """ + + FrictionCoefficient = "frictioncoefficient" + HorizontalEddyViscosityCoefficient = "horizontaleddyviscositycoefficient" + HorizontalEddyDiffusivityCoefficient = "horizontaleddydiffusivitycoefficient" + Advectiontype = "advectiontype" + InfiltrationCapacity = "infiltrationcapacity" + + class ExtOldMeteoQuantity(StrEnum): # Meteorological fields diff --git a/tests/conftest.py b/tests/conftest.py index 7874692f0..d0ac3a211 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -4,6 +4,21 @@ import pytest +@pytest.fixture +def input_files_dir() -> Path: + return Path("tests/data/input") + + +@pytest.fixture +def output_files_dir() -> Path: + return Path("tests/data/output") + + +@pytest.fixture +def reference_files_dir() -> Path: + return Path("tests/data/reference") + + @pytest.fixture def initial_condition_quantities() -> List[str]: return [ @@ -79,26 +94,11 @@ def initial_cond_averaging_type() -> List[str]: ] -@pytest.fixture -def input_files_dir() -> Path: - return Path("tests/data/input") - - @pytest.fixture def polylines_dir() -> Path: return Path("tests/data/input/dflowfm_individual_files/polylines") -@pytest.fixture -def output_files_dir() -> Path: - return Path("tests/data/output") - - -@pytest.fixture -def reference_files_dir() -> Path: - return Path("tests/data/reference") - - @pytest.fixture def time_series_file(input_files_dir: Path) -> Path: return input_files_dir.joinpath("tim/single_data_for_timeseries.tim") @@ -191,3 +191,14 @@ def old_forcing_file_quantities() -> List[str]: @pytest.fixture def old_forcing_comment_len() -> int: return 63 + + +@pytest.fixture +def parameter_quantities() -> List[str]: + return [ + "frictioncoefficient", + "horizontaleddyviscositycoefficient", + "horizontaleddydiffusivitycoefficient", + "advectiontype", + "infiltrationcapacity", + ] diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index a7d123a80..402130e47 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -17,6 +17,7 @@ ExtOldInitialConditionQuantity, ExtOldMethod, ExtOldModel, + ExtOldParametersQuantity, ExtOldQuantity, ExtOldTracerQuantity, ) @@ -1030,3 +1031,14 @@ def test_ext_old_initial_condition_quantity(initial_condition_quantities): quantity in ExtOldInitialConditionQuantity.__members__.keys() for quantity in initial_condition_quantities ) + + +def test_ext_old_parameter_quantity(parameter_quantities: List[str]): + """ + Test the number of parameter quantities in the ExtOldParametersQuantity enum. + """ + assert len(ExtOldParametersQuantity) == len(parameter_quantities) + assert all( + quantity.value in parameter_quantities + for quantity in ExtOldParametersQuantity.__members__.values() + ) From 5db0ceb90a3f947cc003e12aa44076203e5d8074 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 6 Dec 2024 15:37:52 +0100 Subject: [PATCH 087/193] correct assert statement is `test_ext_old_initial_condition_quantity` test --- tests/dflowfm/test_extold.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index 402130e47..b7b1857e6 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -1027,9 +1027,9 @@ def test_ext_old_initial_condition_quantity(initial_condition_quantities): Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. """ assert len(ExtOldInitialConditionQuantity) == 10 - all( - quantity in ExtOldInitialConditionQuantity.__members__.keys() - for quantity in initial_condition_quantities + assert all( + quantity.value in initial_condition_quantities + for quantity in ExtOldInitialConditionQuantity.__members__.values() ) From 99d47d46d88b6b182ff5d1f21300a535df4071ff Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 6 Dec 2024 15:56:17 +0100 Subject: [PATCH 088/193] move the TestModels.TestLateral from thr test_ext.py to a separate test file test_laterals.py --- tests/dflowfm/ext/test_ext.py | 418 +--------------------------- tests/dflowfm/ext/test_laterals.py | 419 +++++++++++++++++++++++++++++ 2 files changed, 420 insertions(+), 417 deletions(-) create mode 100644 tests/dflowfm/ext/test_laterals.py diff --git a/tests/dflowfm/ext/test_ext.py b/tests/dflowfm/ext/test_ext.py index 8cef1dc3e..e9d15efa6 100644 --- a/tests/dflowfm/ext/test_ext.py +++ b/tests/dflowfm/ext/test_ext.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import Dict, List, Optional +from typing import List import numpy as np import pytest @@ -9,427 +9,11 @@ from hydrolib.core.dflowfm.bc.models import Constant, ForcingModel, RealTime from hydrolib.core.dflowfm.ext.models import ( ExtModel, - Lateral, Meteo, MeteoForcingFileType, MeteoInterpolationMethod, ) -from hydrolib.core.dflowfm.ini.models import INIBasedModel from hydrolib.core.dflowfm.tim.models import TimModel -from tests.utils import test_data_dir - - -class TestModels: - """Test class to test all classes and methods contained in the - hydrolib.core.dflowfm.ext.models.py module""" - - class TestLateral: - """Class to test all methods contained in the - hydrolib.core.dflowfm.ext.models.Lateral class""" - - location_error: str = ( - "nodeId or branchId and chainage or xCoordinates, yCoordinates and numCoordinates should be provided" - ) - - class TestValidateCoordinates: - """ - Class to test the paradigms for validate_coordinates. - """ - - def _create_valid_lateral_values(self) -> Dict: - values = dict( - id="randomId", - name="randomName", - numcoordinates=2, - xcoordinates=[1.1, 2.2], - ycoordinates=[1.1, 2.2], - discharge=1.234, - ) - - return values - - def test_given_no_numcoordinates_raises_valueerror(self): - values = self._create_valid_lateral_values() - del values["numcoordinates"] - - with pytest.raises(ValueError): - Lateral(**values) - - def test_given_wrong_numcoordinates_raises_assertionerror(self): - values = self._create_valid_lateral_values() - values["numcoordinates"] = 999 - - with pytest.raises(ValueError): - Lateral(**values) - - def test_given_correct_numcoordinates(self): - xcoordinates = [1, 2] - ycoordinates = [2, 3] - - values = self._create_valid_lateral_values() - values["xcoordinates"] = xcoordinates - values["ycoordinates"] = ycoordinates - values["numcoordinates"] = len(xcoordinates) - - lateral = Lateral(**values) - - assert lateral.xcoordinates == xcoordinates - assert lateral.ycoordinates == ycoordinates - - def test_given_fewer_coordinates_than_minimum_required_throws_valueerror( - self, - ): - values = self._create_valid_lateral_values() - values["numcoordinates"] = 0 - values["xcoordinates"] = [] - values["ycoordinates"] = [] - - with pytest.raises(ValueError): - Lateral(**values) - - class TestValidateLocationType: - """ - Class to test the paradigms for validate_location_type - """ - - @pytest.mark.parametrize( - "value", - [ - pytest.param(""), - pytest.param(" "), - pytest.param("notAValidType"), - ], - ) - def test_given_wrong_location_type_raises_valueerror(self, value: str): - with pytest.raises(ValueError) as exc_mssg: - Lateral.validate_location_type(value) - assert ( - str(exc_mssg.value) - == f"Value given ({value}) not accepted, should be one of: 1d, 2d, all" - ) - - @pytest.mark.parametrize( - "location_type", - [ - pytest.param("1d"), - pytest.param("1D"), - pytest.param("2d"), - pytest.param("2D"), - pytest.param("all"), - pytest.param("All"), - pytest.param("ALL"), - ], - ) - def test_given_correct_locationtype(self, location_type: str): - return_value = Lateral.validate_location_type(location_type) - assert return_value == location_type - - class TestValidateLocationTypeDependencies: - """ - Class to test the paradigms of validate_location_dependencies - """ - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param( - dict(nodeid=None, branchid=None, chainage=None), - id="All None", - ), - pytest.param( - dict(nodeid="", branchid="", chainage=None), - id="All Empty", - ), - ], - ) - def test_given_no_values_raises_valueerror(self, dict_values: dict): - with pytest.raises(ValueError) as exc_err: - Lateral.validate_that_location_specification_is_correct( - values=dict_values - ) - assert str(exc_err.value) == TestModels.TestLateral.location_error - - @pytest.mark.parametrize( - "missing_coordinates", [("xCoordinates"), ("yCoordinates")] - ) - def test_given_numcoords_but_missing_coordinates( - self, missing_coordinates: str - ): - test_dict = dict( - nodeid=None, - branchid=None, - chainage=None, - numcoordinates=2, - xcoordinates=[42, 24], - ycoordinates=[24, 42], - ) - test_dict[missing_coordinates.lower()] = None - with pytest.raises(ValueError) as exc_error: - Lateral.validate_that_location_specification_is_correct(test_dict) - assert str(exc_error.value) == TestModels.TestLateral.location_error - - def test_given_numcoordinates_and_valid_coordinates(self): - test_dict = dict( - nodeid=None, - branchid=None, - chainage=None, - numcoordinates=2, - xcoordinates=[42, 24], - ycoordinates=[24, 42], - ) - return_value = Lateral.validate_that_location_specification_is_correct( - test_dict - ) - assert return_value == test_dict - - def test_given_branchid_and_no_chainage_raises_valueerror(self): - with pytest.raises(ValueError) as exc_err: - Lateral.validate_that_location_specification_is_correct( - dict( - nodeid=None, - branchid="aBranchId", - chainage=None, - ) - ) - assert str(exc_err.value) == TestModels.TestLateral.location_error - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(nodeid="42"), id="Given nodeid"), - pytest.param( - dict(branchid="aBranchId", chainage=4.2), - id="Given branchid and chainage", - ), - ], - ) - def test_given_1d_args_and_location_type_other_then_raises_valueerror( - self, dict_values: dict - ): - test_values = dict( - locationtype="wrongType", - ) - test_dict = {**dict_values, **test_values} - with pytest.raises(ValueError) as exc_err: - Lateral.validate_that_location_specification_is_correct(test_dict) - assert ( - str(exc_err.value) == "locationType should be 1d but was wrongType" - ) - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(nodeid="24"), id="Given nodeid"), - pytest.param( - dict(branchid="aBranchId", chainage=4.2), - id="Given branchid and chainage.", - ), - ], - ) - def test_given_1d_args_and_1d_location_type(self, dict_values: dict): - test_values = dict( - locationtype="1d", - ) - test_dict = {**dict_values, **test_values} - return_value = Lateral.validate_that_location_specification_is_correct( - test_dict - ) - assert return_value == test_dict - - @pytest.mark.parametrize( - "test_dict", - [ - pytest.param(dict(nodeid="aNodeId"), id="With NodeId"), - pytest.param( - dict(branchid="aBranchId", chainage=42), - id="Witch branchid and chainage", - ), - ], - ) - @pytest.mark.parametrize( - "location_type", - [ - pytest.param("", id="Empty string"), - pytest.param(None, id="None string"), - ], - ) - def test_given_1d_args_but_no_locationtype_then_sets_value( - self, test_dict: dict, location_type: str - ): - test_dict["locationtype"] = location_type - return_value = Lateral.validate_that_location_specification_is_correct( - test_dict - ) - assert return_value["locationtype"] == "1d" - - class TestValidateFromCtor: - @pytest.mark.parametrize( - "x_coord, y_coord", - [ - pytest.param(None, [42, 24], id="Only y-coord."), - pytest.param([42, 24], None, id="Only x-coord."), - ], - ) - def test_given_coordinates_but_no_numcoordinates_raises( - self, x_coord: Optional[List[int]], y_coord: Optional[List[int]] - ): - with pytest.raises(ValidationError) as exc_mssg: - Lateral( - id="42", - discharge=1.23, - numcoordinates=None, - xcoordinates=x_coord, - ycoordinates=y_coord, - ) - - expected_error_mssg = TestModels.TestLateral.location_error - assert expected_error_mssg in str(exc_mssg.value) - - @pytest.mark.parametrize( - "x_coord, y_coord", - [ - pytest.param([42, 24], [24], id="Y coord not matching."), - pytest.param([24], [42, 24], id="X coord not matching."), - ], - ) - def test_given_coordinates_not_matching_numcoordinates_raises( - self, x_coord: List[int], y_coord: List[int] - ): - with pytest.raises(ValidationError): - Lateral( - id="42", - discharge=1.23, - numcoordinates=2, - xcoordinates=x_coord, - ycoordinates=y_coord, - ) - - @pytest.mark.parametrize( - "missing_coord", [("xCoordinates"), ("yCoordinates")] - ) - def test_given_partial_coordinates_raises(self, missing_coord: str): - lateral_dict = dict( - id="42", - discharge=1.23, - numcoordinates=2, - xcoordinates=[42, 24], - ycoordinates=[24, 42], - locationtype="all", - ) - lateral_dict[missing_coord.lower()] = None - with pytest.raises(ValidationError) as exc_mssg: - Lateral(**lateral_dict) - expected_error_mssg = TestModels.TestLateral.location_error - assert expected_error_mssg in str(exc_mssg.value) - - def test_given_unknown_locationtype_raises(self): - with pytest.raises(ValidationError) as exc_mssg: - location_type = "loremIpsum" - Lateral( - id="42", - discharge=1.23, - numcoordinates=2, - xcoordinates=[42, 24], - ycoordinates=[24, 42], - locationtype=location_type, - ) - expected_error_mssg = f"Value given ({location_type}) not accepted, should be one of: 1d, 2d, all" - assert expected_error_mssg in str(exc_mssg.value) - - @pytest.mark.parametrize( - "location_values", - [ - pytest.param(dict(nodeid="aNodeId"), id="nodeid given."), - pytest.param( - dict(branchid="aBranchId", chainage=42), - id="branchid + chainage given.", - ), - pytest.param( - dict(nodeid="", branchid="aBranchId", chainage=42), - id="Empty nodeid.", - ), - ], - ) - def test_given_valid_location_args_constructs_lateral( - self, location_values: dict - ): - # 1. Define test data. - default_values = dict( - id="42", - discharge=1.23, - locationtype="1d", - ) - test_dict = {**default_values, **location_values} - - # 2. Run test. - new_lateral = Lateral(**test_dict) - - # 3. Validate final expectations. - for key, value in location_values.items(): - assert new_lateral.dict()[key] == value - - @pytest.mark.parametrize( - "location_dict", - [ - pytest.param( - dict(locationtype="1d", nodeid="aNodeId"), id="1D-With NodeId" - ), - pytest.param( - dict(locationtype="1d", branchid="aBranchId", chainage=4.2), - id="1D-With BranchId and Chainage", - ), - pytest.param( - dict( - locationtype="2d", - xcoordinates=[42, 24], - ycoordinates=[24, 42], - numcoordinates=2, - ), - id="2D-With coordinates", - ), - pytest.param( - dict( - locationtype="all", - xcoordinates=[42, 24], - ycoordinates=[24, 42], - numcoordinates=2, - ), - id="All-With coordinates", - ), - ], - ) - def test_given_valid_args_validates_locationtype(self, location_dict: str): - # 1. Define test data. - default_values = dict( - id="42", - discharge="realtime", - ) - lateral_dict = {**default_values, **location_dict} - # 2. Run test. - lateral_cls = Lateral(**lateral_dict) - - # 3. Validate expectations. - assert isinstance(lateral_cls, INIBasedModel) - for key, value in lateral_dict.items(): - assert lateral_cls.dict()[key] == value - - class TestValidateForcingData: - """ - Class to test the different types of discharge forcings. - """ - - def test_dischargeforcings_fromfile(self): - - filepath = ( - test_data_dir / "input/dflowfm_individual_files/FlowFM_bnd.ext" - ) - m = ExtModel(filepath) - assert len(m.lateral) == 72 - assert m.lateral[0].discharge == RealTime.realtime - assert np.isclose(m.lateral[1].discharge, 1.23) - assert isinstance(m.lateral[3].discharge, ForcingModel) - assert isinstance(m.lateral[3].discharge.forcing[0], Constant) - assert m.lateral[3].discharge.forcing[0].name == "10637" class TestExtModel: diff --git a/tests/dflowfm/ext/test_laterals.py b/tests/dflowfm/ext/test_laterals.py new file mode 100644 index 000000000..5bb5b01f1 --- /dev/null +++ b/tests/dflowfm/ext/test_laterals.py @@ -0,0 +1,419 @@ +""" +Test class to test all classes and methods contained in the +hydrolib.core.dflowfm.ext.models.py module +""" + +from typing import Dict, List, Optional + +import numpy as np +import pytest +from pydantic.v1 import ValidationError + +from hydrolib.core.dflowfm.bc.models import Constant, ForcingModel, RealTime +from hydrolib.core.dflowfm.ext.models import ExtModel, Lateral +from hydrolib.core.dflowfm.ini.models import INIBasedModel +from tests.utils import test_data_dir + +LOCATION_ERROR: str = ( + "nodeId or branchId and chainage or xCoordinates, yCoordinates and numCoordinates should be provided" +) + +""" +Class to test all methods contained in the +hydrolib.core.dflowfm.ext.models.Lateral class +""" + + +class TestValidateCoordinates: + """ + Class to test the paradigms for validate_coordinates. + """ + + def _create_valid_lateral_values(self) -> Dict: + values = dict( + id="randomId", + name="randomName", + numcoordinates=2, + xcoordinates=[1.1, 2.2], + ycoordinates=[1.1, 2.2], + discharge=1.234, + ) + + return values + + def test_given_no_numcoordinates_raises_valueerror(self): + values = self._create_valid_lateral_values() + del values["numcoordinates"] + + with pytest.raises(ValueError): + Lateral(**values) + + def test_given_wrong_numcoordinates_raises_assertionerror(self): + values = self._create_valid_lateral_values() + values["numcoordinates"] = 999 + + with pytest.raises(ValueError): + Lateral(**values) + + def test_given_correct_numcoordinates(self): + xcoordinates = [1, 2] + ycoordinates = [2, 3] + + values = self._create_valid_lateral_values() + values["xcoordinates"] = xcoordinates + values["ycoordinates"] = ycoordinates + values["numcoordinates"] = len(xcoordinates) + + lateral = Lateral(**values) + + assert lateral.xcoordinates == xcoordinates + assert lateral.ycoordinates == ycoordinates + + def test_given_fewer_coordinates_than_minimum_required_throws_valueerror( + self, + ): + values = self._create_valid_lateral_values() + values["numcoordinates"] = 0 + values["xcoordinates"] = [] + values["ycoordinates"] = [] + + with pytest.raises(ValueError): + Lateral(**values) + + +class TestValidateLocationType: + """ + Class to test the paradigms for validate_location_type + """ + + @pytest.mark.parametrize( + "value", + [ + pytest.param(""), + pytest.param(" "), + pytest.param("notAValidType"), + ], + ) + def test_given_wrong_location_type_raises_valueerror(self, value: str): + with pytest.raises(ValueError) as exc_mssg: + Lateral.validate_location_type(value) + assert ( + str(exc_mssg.value) + == f"Value given ({value}) not accepted, should be one of: 1d, 2d, all" + ) + + @pytest.mark.parametrize( + "location_type", + [ + pytest.param("1d"), + pytest.param("1D"), + pytest.param("2d"), + pytest.param("2D"), + pytest.param("all"), + pytest.param("All"), + pytest.param("ALL"), + ], + ) + def test_given_correct_locationtype(self, location_type: str): + return_value = Lateral.validate_location_type(location_type) + assert return_value == location_type + + +class TestValidateLocationTypeDependencies: + """ + Class to test the paradigms of validate_location_dependencies + """ + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param( + dict(nodeid=None, branchid=None, chainage=None), + id="All None", + ), + pytest.param( + dict(nodeid="", branchid="", chainage=None), + id="All Empty", + ), + ], + ) + def test_given_no_values_raises_valueerror(self, dict_values: dict): + with pytest.raises(ValueError) as exc_err: + Lateral.validate_that_location_specification_is_correct(values=dict_values) + assert str(exc_err.value) == LOCATION_ERROR + + @pytest.mark.parametrize( + "missing_coordinates", [("xCoordinates"), ("yCoordinates")] + ) + def test_given_numcoords_but_missing_coordinates(self, missing_coordinates: str): + test_dict = dict( + nodeid=None, + branchid=None, + chainage=None, + numcoordinates=2, + xcoordinates=[42, 24], + ycoordinates=[24, 42], + ) + test_dict[missing_coordinates.lower()] = None + with pytest.raises(ValueError) as exc_error: + Lateral.validate_that_location_specification_is_correct(test_dict) + assert str(exc_error.value) == LOCATION_ERROR + + def test_given_numcoordinates_and_valid_coordinates(self): + test_dict = dict( + nodeid=None, + branchid=None, + chainage=None, + numcoordinates=2, + xcoordinates=[42, 24], + ycoordinates=[24, 42], + ) + return_value = Lateral.validate_that_location_specification_is_correct( + test_dict + ) + assert return_value == test_dict + + def test_given_branchid_and_no_chainage_raises_valueerror(self): + with pytest.raises(ValueError) as exc_err: + Lateral.validate_that_location_specification_is_correct( + dict( + nodeid=None, + branchid="aBranchId", + chainage=None, + ) + ) + assert str(exc_err.value) == LOCATION_ERROR + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(nodeid="42"), id="Given nodeid"), + pytest.param( + dict(branchid="aBranchId", chainage=4.2), + id="Given branchid and chainage", + ), + ], + ) + def test_given_1d_args_and_location_type_other_then_raises_valueerror( + self, dict_values: dict + ): + test_values = dict( + locationtype="wrongType", + ) + test_dict = {**dict_values, **test_values} + with pytest.raises(ValueError) as exc_err: + Lateral.validate_that_location_specification_is_correct(test_dict) + assert str(exc_err.value) == "locationType should be 1d but was wrongType" + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(nodeid="24"), id="Given nodeid"), + pytest.param( + dict(branchid="aBranchId", chainage=4.2), + id="Given branchid and chainage.", + ), + ], + ) + def test_given_1d_args_and_1d_location_type(self, dict_values: dict): + test_values = dict( + locationtype="1d", + ) + test_dict = {**dict_values, **test_values} + return_value = Lateral.validate_that_location_specification_is_correct( + test_dict + ) + assert return_value == test_dict + + @pytest.mark.parametrize( + "test_dict", + [ + pytest.param(dict(nodeid="aNodeId"), id="With NodeId"), + pytest.param( + dict(branchid="aBranchId", chainage=42), + id="Witch branchid and chainage", + ), + ], + ) + @pytest.mark.parametrize( + "location_type", + [ + pytest.param("", id="Empty string"), + pytest.param(None, id="None string"), + ], + ) + def test_given_1d_args_but_no_locationtype_then_sets_value( + self, test_dict: dict, location_type: str + ): + test_dict["locationtype"] = location_type + return_value = Lateral.validate_that_location_specification_is_correct( + test_dict + ) + assert return_value["locationtype"] == "1d" + + +class TestValidateFromCtor: + @pytest.mark.parametrize( + "x_coord, y_coord", + [ + pytest.param(None, [42, 24], id="Only y-coord."), + pytest.param([42, 24], None, id="Only x-coord."), + ], + ) + def test_given_coordinates_but_no_numcoordinates_raises( + self, x_coord: Optional[List[int]], y_coord: Optional[List[int]] + ): + with pytest.raises(ValidationError) as exc_mssg: + Lateral( + id="42", + discharge=1.23, + numcoordinates=None, + xcoordinates=x_coord, + ycoordinates=y_coord, + ) + + expected_error_mssg = LOCATION_ERROR + assert expected_error_mssg in str(exc_mssg.value) + + @pytest.mark.parametrize( + "x_coord, y_coord", + [ + pytest.param([42, 24], [24], id="Y coord not matching."), + pytest.param([24], [42, 24], id="X coord not matching."), + ], + ) + def test_given_coordinates_not_matching_numcoordinates_raises( + self, x_coord: List[int], y_coord: List[int] + ): + with pytest.raises(ValidationError): + Lateral( + id="42", + discharge=1.23, + numcoordinates=2, + xcoordinates=x_coord, + ycoordinates=y_coord, + ) + + @pytest.mark.parametrize("missing_coord", [("xCoordinates"), ("yCoordinates")]) + def test_given_partial_coordinates_raises(self, missing_coord: str): + lateral_dict = dict( + id="42", + discharge=1.23, + numcoordinates=2, + xcoordinates=[42, 24], + ycoordinates=[24, 42], + locationtype="all", + ) + lateral_dict[missing_coord.lower()] = None + with pytest.raises(ValidationError) as exc_mssg: + Lateral(**lateral_dict) + expected_error_mssg = LOCATION_ERROR + assert expected_error_mssg in str(exc_mssg.value) + + def test_given_unknown_locationtype_raises(self): + with pytest.raises(ValidationError) as exc_mssg: + location_type = "loremIpsum" + Lateral( + id="42", + discharge=1.23, + numcoordinates=2, + xcoordinates=[42, 24], + ycoordinates=[24, 42], + locationtype=location_type, + ) + expected_error_mssg = ( + f"Value given ({location_type}) not accepted, should be one of: 1d, 2d, all" + ) + assert expected_error_mssg in str(exc_mssg.value) + + @pytest.mark.parametrize( + "location_values", + [ + pytest.param(dict(nodeid="aNodeId"), id="nodeid given."), + pytest.param( + dict(branchid="aBranchId", chainage=42), + id="branchid + chainage given.", + ), + pytest.param( + dict(nodeid="", branchid="aBranchId", chainage=42), + id="Empty nodeid.", + ), + ], + ) + def test_given_valid_location_args_constructs_lateral(self, location_values: dict): + # 1. Define test data. + default_values = dict( + id="42", + discharge=1.23, + locationtype="1d", + ) + test_dict = {**default_values, **location_values} + + # 2. Run test. + new_lateral = Lateral(**test_dict) + + # 3. Validate final expectations. + for key, value in location_values.items(): + assert new_lateral.dict()[key] == value + + @pytest.mark.parametrize( + "location_dict", + [ + pytest.param( + dict(locationtype="1d", nodeid="aNodeId"), id="1D-With NodeId" + ), + pytest.param( + dict(locationtype="1d", branchid="aBranchId", chainage=4.2), + id="1D-With BranchId and Chainage", + ), + pytest.param( + dict( + locationtype="2d", + xcoordinates=[42, 24], + ycoordinates=[24, 42], + numcoordinates=2, + ), + id="2D-With coordinates", + ), + pytest.param( + dict( + locationtype="all", + xcoordinates=[42, 24], + ycoordinates=[24, 42], + numcoordinates=2, + ), + id="All-With coordinates", + ), + ], + ) + def test_given_valid_args_validates_locationtype(self, location_dict: str): + # 1. Define test data. + default_values = dict( + id="42", + discharge="realtime", + ) + lateral_dict = {**default_values, **location_dict} + # 2. Run test. + lateral_cls = Lateral(**lateral_dict) + + # 3. Validate expectations. + assert isinstance(lateral_cls, INIBasedModel) + for key, value in lateral_dict.items(): + assert lateral_cls.dict()[key] == value + + +class TestValidateForcingData: + """ + Class to test the different types of discharge forcings. + """ + + def test_dischargeforcings_fromfile(self): + + filepath = test_data_dir / "input/dflowfm_individual_files/FlowFM_bnd.ext" + m = ExtModel(filepath) + assert len(m.lateral) == 72 + assert m.lateral[0].discharge == RealTime.realtime + assert np.isclose(m.lateral[1].discharge, 1.23) + assert isinstance(m.lateral[3].discharge, ForcingModel) + assert isinstance(m.lateral[3].discharge.forcing[0], Constant) + assert m.lateral[3].discharge.forcing[0].name == "10637" From 8e5314f6bde59e9b583e10a25f741ad1f4bb9ec1 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 6 Dec 2024 15:57:39 +0100 Subject: [PATCH 089/193] correct the test file description --- tests/dflowfm/ext/test_laterals.py | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/tests/dflowfm/ext/test_laterals.py b/tests/dflowfm/ext/test_laterals.py index 5bb5b01f1..24558183b 100644 --- a/tests/dflowfm/ext/test_laterals.py +++ b/tests/dflowfm/ext/test_laterals.py @@ -1,6 +1,6 @@ """ -Test class to test all classes and methods contained in the -hydrolib.core.dflowfm.ext.models.py module +Class to test all methods contained in the +hydrolib.core.dflowfm.ext.models.Lateral class """ from typing import Dict, List, Optional @@ -18,11 +18,6 @@ "nodeId or branchId and chainage or xCoordinates, yCoordinates and numCoordinates should be provided" ) -""" -Class to test all methods contained in the -hydrolib.core.dflowfm.ext.models.Lateral class -""" - class TestValidateCoordinates: """ From f4246d2cfed7cc4eaff6ac47a3067b8c0dc90c39 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 6 Dec 2024 16:06:18 +0100 Subject: [PATCH 090/193] reformat the test_boundary.py file --- tests/dflowfm/ext/test_boundary.py | 319 ++++++++++++++--------------- 1 file changed, 155 insertions(+), 164 deletions(-) diff --git a/tests/dflowfm/ext/test_boundary.py b/tests/dflowfm/ext/test_boundary.py index ac99bc49b..6eb01b786 100644 --- a/tests/dflowfm/ext/test_boundary.py +++ b/tests/dflowfm/ext/test_boundary.py @@ -12,171 +12,162 @@ from hydrolib.core.dflowfm.ext.models import Boundary -class TestBoundary: - - def test_existing_file(self): - polyline = "tests/data/input/boundary-conditions/tfl_01.pli" - data = { - "quantity": "waterlevelbnd", - "locationfile": polyline, - "forcingfile": ForcingModel(), - } - boundary_block = Boundary(**data) - assert boundary_block.locationfile == DiskOnlyFileModel(Path(polyline)) - assert boundary_block.quantity == "waterlevelbnd" - assert boundary_block.forcingfile == ForcingModel() - assert boundary_block.bndwidth1d is None - assert boundary_block.bndbldepth is None - - def test_given_args_expected_values(self): - # 1. Explicit declaration of parameters (to validate keys as they are written) - dict_values = { - "quantity": "42", - "nodeid": "aNodeId", - "locationfile": Path("aLocationFile"), - "forcingfile": ForcingModel(), - "bndwidth1d": 4.2, - "bndbldepth": 2.4, - } - - # 2. Create boundary. - created_boundary = Boundary(**dict_values) - - # 3. Verify boundary values as expected. - created_boundary_dict = created_boundary.dict() - - compare_data = dict(dict_values) - expected_location_path = compare_data.pop("locationfile") - - for key, value in compare_data.items(): - assert created_boundary_dict[key] == value - - assert ( - created_boundary_dict["locationfile"]["filepath"] == expected_location_path +def test_existing_file(): + polyline = "tests/data/input/boundary-conditions/tfl_01.pli" + data = { + "quantity": "waterlevelbnd", + "locationfile": polyline, + "forcingfile": ForcingModel(), + } + boundary_block = Boundary(**data) + assert boundary_block.locationfile == DiskOnlyFileModel(Path(polyline)) + assert boundary_block.quantity == "waterlevelbnd" + assert boundary_block.forcingfile == ForcingModel() + assert boundary_block.bndwidth1d is None + assert boundary_block.bndbldepth is None + + +def test_given_args_expected_values(): + # 1. Explicit declaration of parameters (to validate keys as they are written) + dict_values = { + "quantity": "42", + "nodeid": "aNodeId", + "locationfile": Path("aLocationFile"), + "forcingfile": ForcingModel(), + "bndwidth1d": 4.2, + "bndbldepth": 2.4, + } + + created_boundary = Boundary(**dict_values) + + # 3. Verify boundary values as expected. + created_boundary_dict = created_boundary.dict() + + compare_data = dict(dict_values) + expected_location_path = compare_data.pop("locationfile") + + for key, value in compare_data.items(): + assert created_boundary_dict[key] == value + + assert created_boundary_dict["locationfile"]["filepath"] == expected_location_path + + +def test_given_args_as_alias_expected_values(): + # 1. Explicit declaration of parameters (to validate keys as they are written) + dict_values = { + "quantity": "42", + "nodeid": "aNodeId", + "locationfile": Path("aLocationFile"), + "forcingFile": ForcingModel(), + "bndWidth1D": 4.2, + "bndBlDepth": 2.4, + } + + created_boundary = Boundary(**dict_values) + boundary_as_dict = created_boundary.dict() + # 3. Verify boundary values as expected. + assert boundary_as_dict["quantity"] == dict_values["quantity"] + assert boundary_as_dict["nodeid"] == dict_values["nodeid"] + assert boundary_as_dict["locationfile"]["filepath"] == dict_values["locationfile"] + assert boundary_as_dict["forcingfile"] == dict_values["forcingFile"] + assert boundary_as_dict["bndwidth1d"] == dict_values["bndWidth1D"] + assert boundary_as_dict["bndbldepth"] == dict_values["bndBlDepth"] + + +class TestValidateRootValidator: + """ + Test class to validate the paradigms when evaluating + check_nodeid_or_locationfile_present. + """ + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(), id="No entries."), + pytest.param(dict(nodeid=None, locationfile=None), id="Entries are None."), + pytest.param(dict(nodeid="", locationfile=""), id="Entries are Empty."), + ], + ) + def test_given_no_values_raises_valueerror(self, dict_values: dict): + with pytest.raises(ValueError) as exc_mssg: + Boundary.check_nodeid_or_locationfile_present(dict_values) + + # 3. Verify final expectations. + expected_error_mssg = ( + "Either nodeId or locationFile fields should be specified." ) + assert str(exc_mssg.value) == expected_error_mssg + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), + pytest.param( + dict(locationfile=Path("aLocationFile")), + id="LocationFile present.", + ), + pytest.param( + dict(nodeid="bNodeId", locationfile="bLocationFile"), + id="Both present.", + ), + ], + ) + def test_given_dict_values_doesnot_raise(self, dict_values: dict): + return_values = Boundary.check_nodeid_or_locationfile_present(dict_values) + assert dict_values == return_values + + +class TestValidateFromCtor: + """ + Test class to validate the validation during default object creation. + """ + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(), id="No entries."), + pytest.param(dict(nodeid=None, locationfile=None), id="Entries are None."), + pytest.param(dict(nodeid=""), id="NodeId is empty."), + ], + ) + def test_given_no_values_raises_valueerror(self, dict_values: dict): + required_values = dict(quantity="aQuantity") + test_values = {**dict_values, **required_values} + with pytest.raises(ValueError) as exc_mssg: + Boundary(**test_values) + + # 3. Verify final expectations. + expected_error_mssg = ( + "Either nodeId or locationFile fields should be specified." + ) + assert expected_error_mssg in str(exc_mssg.value) + + @pytest.mark.parametrize( + "dict_values", + [ + pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), + pytest.param( + dict(locationfile=Path("aLocationFile")), + id="LocationFile present.", + ), + pytest.param( + dict(nodeid="bNodeId", locationfile=Path("bLocationFile")), + id="Both present.", + ), + ], + ) + def test_given_dict_values_doesnot_raise(self, dict_values: dict): + required_values = dict(quantity="aQuantity", forcingfile=ForcingModel()) + test_values = {**dict_values, **required_values} + created_boundary = Boundary(**test_values) + + expected_locationfile = test_values.pop("locationfile", None) + + for key, value in test_values.items(): + if key == "forcing_file": + value = value.dict() + assert created_boundary.dict()[key] == value - def test_given_args_as_alias_expected_values(self): - # 1. Explicit declaration of parameters (to validate keys as they are written) - dict_values = { - "quantity": "42", - "nodeid": "aNodeId", - "locationfile": Path("aLocationFile"), - "forcingFile": ForcingModel(), - "bndWidth1D": 4.2, - "bndBlDepth": 2.4, - } - - # 2. Create boundary. - created_boundary = Boundary(**dict_values) - boundary_as_dict = created_boundary.dict() - # 3. Verify boundary values as expected. - assert boundary_as_dict["quantity"] == dict_values["quantity"] - assert boundary_as_dict["nodeid"] == dict_values["nodeid"] assert ( - boundary_as_dict["locationfile"]["filepath"] == dict_values["locationfile"] - ) - assert boundary_as_dict["forcingfile"] == dict_values["forcingFile"] - assert boundary_as_dict["bndwidth1d"] == dict_values["bndWidth1D"] - assert boundary_as_dict["bndbldepth"] == dict_values["bndBlDepth"] - - class TestValidateRootValidator: - """ - Test class to validate the paradigms when evaluating - check_nodeid_or_locationfile_present. - """ - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(), id="No entries."), - pytest.param( - dict(nodeid=None, locationfile=None), id="Entries are None." - ), - pytest.param(dict(nodeid="", locationfile=""), id="Entries are Empty."), - ], - ) - def test_given_no_values_raises_valueerror(self, dict_values: dict): - with pytest.raises(ValueError) as exc_mssg: - Boundary.check_nodeid_or_locationfile_present(dict_values) - - # 3. Verify final expectations. - expected_error_mssg = ( - "Either nodeId or locationFile fields should be specified." - ) - assert str(exc_mssg.value) == expected_error_mssg - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), - pytest.param( - dict(locationfile=Path("aLocationFile")), - id="LocationFile present.", - ), - pytest.param( - dict(nodeid="bNodeId", locationfile="bLocationFile"), - id="Both present.", - ), - ], - ) - def test_given_dict_values_doesnot_raise(self, dict_values: dict): - return_values = Boundary.check_nodeid_or_locationfile_present(dict_values) - assert dict_values == return_values - - class TestValidateFromCtor: - """ - Test class to validate the validation during default object creation. - """ - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(), id="No entries."), - pytest.param( - dict(nodeid=None, locationfile=None), id="Entries are None." - ), - pytest.param(dict(nodeid=""), id="NodeId is empty."), - ], - ) - def test_given_no_values_raises_valueerror(self, dict_values: dict): - required_values = dict(quantity="aQuantity") - test_values = {**dict_values, **required_values} - with pytest.raises(ValueError) as exc_mssg: - Boundary(**test_values) - - # 3. Verify final expectations. - expected_error_mssg = ( - "Either nodeId or locationFile fields should be specified." - ) - assert expected_error_mssg in str(exc_mssg.value) - - @pytest.mark.parametrize( - "dict_values", - [ - pytest.param(dict(nodeid="aNodeId"), id="NodeId present."), - pytest.param( - dict(locationfile=Path("aLocationFile")), - id="LocationFile present.", - ), - pytest.param( - dict(nodeid="bNodeId", locationfile=Path("bLocationFile")), - id="Both present.", - ), - ], + created_boundary.dict()["locationfile"]["filepath"] == expected_locationfile ) - def test_given_dict_values_doesnot_raise(self, dict_values: dict): - required_values = dict(quantity="aQuantity", forcingfile=ForcingModel()) - test_values = {**dict_values, **required_values} - created_boundary = Boundary(**test_values) - - expected_locationfile = test_values.pop("locationfile", None) - - for key, value in test_values.items(): - if key == "forcing_file": - value = value.dict() - assert created_boundary.dict()[key] == value - - assert ( - created_boundary.dict()["locationfile"]["filepath"] - == expected_locationfile - ) From b3c92b1ea8840d2fc22f08b6e2070cfe6b5082e4 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 6 Dec 2024 16:08:40 +0100 Subject: [PATCH 091/193] clean the test file from unused imported functions --- tests/dflowfm/ext/test_ext.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/dflowfm/ext/test_ext.py b/tests/dflowfm/ext/test_ext.py index e9d15efa6..bdb42d7e6 100644 --- a/tests/dflowfm/ext/test_ext.py +++ b/tests/dflowfm/ext/test_ext.py @@ -6,7 +6,7 @@ from pydantic.v1 import ValidationError from hydrolib.core.basemodel import DiskOnlyFileModel -from hydrolib.core.dflowfm.bc.models import Constant, ForcingModel, RealTime +from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import ( ExtModel, Meteo, From eef3351c3009f7ae61df5dae3b573ff11b418efd Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 13:57:51 +0100 Subject: [PATCH 092/193] remove unused class `ext.models.InitialConditions` --- hydrolib/core/dflowfm/ext/models.py | 36 ----------------------------- 1 file changed, 36 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 1836149de..eb84ca6ff 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -20,11 +20,6 @@ make_list_validator, validate_location_specification, ) -from hydrolib.core.dflowfm.inifield.models import ( - AveragingType, - DataFileType, - InterpolationMethod, -) from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none @@ -359,34 +354,3 @@ def _ext(cls) -> str: @classmethod def _filename(cls) -> str: return "bnd" - - -class InitialConditions(INIBasedModel): - """ - A `[Initial Condition]` block for use inside an external forcings file, - i.e., a [ExtModel][hydrolib.core.dflowfm.ext.models.ExtModel]. - - All lowercased attributes match with the meteo input as described in - [UM Sec.C.5.2.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.3). - """ - - _header: Literal["Initial"] = "Initial" - quantity: str = Field(alias="QUANTITY") - datafile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") - datafiletype: DataFileType = Field(alias="dataFileType") - interpolationmethod: Optional[InterpolationMethod] = Field( - alias="interpolationMethod" - ) - operand: Optional[Operand] = Field(Operand.override.value, alias="operand") - extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") - extrapolationSearchRadius: Optional[float] = Field( - alias="extrapolationSearchRadius" - ) - averagingtype: Optional[AveragingType] = Field(alias="averagingType") - averagingnummin: Optional[int] = Field(default=1, alias="averagingNumMin") - averagingpercentile: Optional[float] = Field(default=0, alias="averagingPercentile") - - datafiletype_validator = get_enum_validator("datafiletype", enum=DataFileType) - interpolationmethod_validator = get_enum_validator( - "interpolationmethod", enum=InterpolationMethod - ) From de14bf041f455f5db4755d76009b34174b591ee4 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 13:59:22 +0100 Subject: [PATCH 093/193] add reference to the initial condition documentation in the `InitialField` class --- hydrolib/core/dflowfm/inifield/models.py | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/hydrolib/core/dflowfm/inifield/models.py b/hydrolib/core/dflowfm/inifield/models.py index eb44942e5..f91663e72 100644 --- a/hydrolib/core/dflowfm/inifield/models.py +++ b/hydrolib/core/dflowfm/inifield/models.py @@ -188,6 +188,12 @@ class InitialField(AbstractSpatialField): Initial condition field definition, represents an `[Initial]` block in an inifield file. Typically inside the definition list of a [FMModel][hydrolib.core.dflowfm.mdu.models.FMModel]`.geometry.inifieldfile.initial[..]` + + A `[Initial Condition]` block for use inside an external forcings file, + i.e., a [ExtModel][hydrolib.core.dflowfm.ext.models.ExtModel]. + + All lowercased attributes match with the meteo input as described in + [UM Sec.C.5.2.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.3). """ _header: Literal["Initial"] = "Initial" From d0ee415a979d96a10d14c043fb588a0421d2b20b Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 14:01:48 +0100 Subject: [PATCH 094/193] add `ParametersConverter` class and test --- hydrolib/tools/ext_old_to_new/converters.py | 73 ++++++++++++++++++++- tests/tools/test_converters.py | 19 +++++- 2 files changed, 90 insertions(+), 2 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 0d6108f11..eb138c1c8 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -2,7 +2,11 @@ from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary, Meteo from hydrolib.core.dflowfm.extold.models import ExtOldForcing -from hydrolib.core.dflowfm.inifield.models import InitialField, InterpolationMethod +from hydrolib.core.dflowfm.inifield.models import ( + InitialField, + InterpolationMethod, + ParameterField, +) from hydrolib.tools.ext_old_to_new.enum_converters import ( oldfiletype_to_forcing_file_type, oldmethod_to_averaging_type, @@ -183,3 +187,70 @@ def convert(self, forcing: ExtOldForcing) -> InitialField: new_block = InitialField(**block_data) return new_block + + +class ParametersConverter(BaseConverter): + + def __init__(self): + super().__init__() + + def convert(self, forcing: ExtOldForcing) -> ParameterField: + """Convert an old external forcing block with meteo data to a boundary + forcing block suitable for inclusion in a new external forcings file. + + This function takes a forcing block from an old external forcings + file, represented by an instance of ExtOldForcing, and converts it + into a Meteo object. The Boundary object is suitable for use in new + external forcings files, adhering to the updated format and + specifications. + + Args: + forcing (ExtOldForcing): The contents of a single forcing block + in an old external forcings file. This object contains all the + necessary information, such as quantity, values, and timestamps, + required for the conversion process. + + Returns: + Boundary: A Boindary object that represents the converted forcing + block, ready to be included in a new external forcings file. The + Boundary object conforms to the new format specifications, ensuring + compatibility with updated systems and models. + + Raises: + ValueError: If the forcing block contains a quantity that is not + supported by the converter, a ValueError is raised. This ensures + that only compatible forcing blocks are processed, maintaining + data integrity and preventing errors in the conversion process. + """ + block_data = { + "quantity": forcing.quantity, + "datafile": forcing.filename, + "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), + } + if block_data["datafiletype"] == "polygon": + block_data["value"] = forcing.value + + if forcing.sourcemask != DiskOnlyFileModel(None): + raise ValueError( + f"Attribute 'SOURCEMASK' is no longer supported, cannot " + f"convert this input. Encountered for QUANTITY=" + f"{forcing.quantity} and FILENAME={forcing.filename}." + ) + block_data["interpolationmethod"] = oldmethod_to_interpolation_method( + forcing.method + ) + if block_data["interpolationmethod"] == InterpolationMethod.averaging: + block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + block_data["averagingrelsize"] = forcing.relativesearchcellsize + block_data["averagingnummin"] = forcing.nummin + block_data["averagingpercentile"] = forcing.percentileminmax + block_data["operand"] = forcing.operand + + if hasattr(forcing, "extrapolation"): + block_data["extrapolationmethod"] = forcing.extrapolation + if hasattr(forcing, "locationtype"): + block_data["locationtype"] = forcing.locationtype + + new_block = ParameterField(**block_data) + + return new_block diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 79ab743af..f3a9fd3b2 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -4,10 +4,11 @@ from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity -from hydrolib.core.dflowfm.inifield.models import InitialField +from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField from hydrolib.tools.ext_old_to_new.converters import ( BoundaryConditionConverter, InitialConditionConverter, + ParametersConverter, ) @@ -41,6 +42,22 @@ def test_polygon_data_file(self): assert np.isclose(new_quantity_block.value, 0.0) +class TestConvertParameters: + def test_sample_data_file(self): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.FrictionCoefficient, + filename="iniwaterlevel.xyz", + filetype=7, # "Polyline" + method="5", # "Interpolate space", + operand="O", + ) + + new_quantity_block = ParametersConverter().convert(forcing) + assert isinstance(new_quantity_block, ParameterField) + assert new_quantity_block.datafiletype == "sample" + assert new_quantity_block.interpolationmethod == "triangulation" + + class TestBoundaryConverter: def test_default(self): From 656b112849387c66734e8b580f4c3e8b82c7a413 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 14:22:48 +0100 Subject: [PATCH 095/193] merge the `BaseConverter` class to the `converters` module --- .../tools/ext_old_to_new/base_converter.py | 34 ------------------- .../tools/ext_old_to_new/converter_factory.py | 2 +- hydrolib/tools/ext_old_to_new/converters.py | 33 +++++++++++++++++- 3 files changed, 33 insertions(+), 36 deletions(-) delete mode 100644 hydrolib/tools/ext_old_to_new/base_converter.py diff --git a/hydrolib/tools/ext_old_to_new/base_converter.py b/hydrolib/tools/ext_old_to_new/base_converter.py deleted file mode 100644 index d6fa2307e..000000000 --- a/hydrolib/tools/ext_old_to_new/base_converter.py +++ /dev/null @@ -1,34 +0,0 @@ -from abc import ABC, abstractmethod -from typing import Any - -from hydrolib.core.dflowfm.extold.models import ExtOldForcing - - -class BaseConverter(ABC): - """Abstract base class for converting old external forcings blocks - to new blocks. - - Subclasses must implement the `convert` method, specific for the - type of model data in the various old external forcing blocks. - - Class ConverterFactory uses these subclasses to create the correct - converter, depending on the quantity of the forcing block. - """ - - def __init__(self): - pass - - @abstractmethod - def convert(self, data: ExtOldForcing) -> Any: - """Converts the data from the old external forcings format to - the proper/new model input block. - - Args: - data (ExtOldForcing): The data read from an old format - external forcings file. - - Returns: - Any: The converted data in the new format. Should be - included into some FileModel object by the caller. - """ - raise NotImplementedError("Subclasses must implement convert method") diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py index 021d00dd8..415bb5b72 100644 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ b/hydrolib/tools/ext_old_to_new/converter_factory.py @@ -3,7 +3,7 @@ ExtOldInitialConditionQuantity, ExtOldMeteoQuantity, ) -from hydrolib.tools.ext_old_to_new.base_converter import BaseConverter +from hydrolib.tools.ext_old_to_new.converters import BaseConverter from hydrolib.tools.ext_old_to_new.converters import ( BoundaryConditionConverter, InitialConditionConverter, diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index eb138c1c8..938a5da6f 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,3 +1,5 @@ +from typing import Any +from abc import ABC, abstractmethod from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary, Meteo @@ -13,7 +15,36 @@ oldmethod_to_interpolation_method, ) -from .base_converter import BaseConverter + +class BaseConverter(ABC): + """Abstract base class for converting old external forcings blocks + to new blocks. + + Subclasses must implement the `convert` method, specific for the + type of model data in the various old external forcing blocks. + + Class ConverterFactory uses these subclasses to create the correct + converter, depending on the quantity of the forcing block. + """ + + def __init__(self): + """Initializes the BaseConverter object.""" + pass + + @abstractmethod + def convert(self, data: ExtOldForcing) -> Any: + """Converts the data from the old external forcings format to + the proper/new model input block. + + Args: + data (ExtOldForcing): The data read from an old format + external forcings file. + + Returns: + Any: The converted data in the new format. Should be + included into some FileModel object by the caller. + """ + raise NotImplementedError("Subclasses must implement convert method") class MeteoConverter(BaseConverter): From 1e3552a608a99ef8b52ae8086da84f3f4a69306a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 14:47:32 +0100 Subject: [PATCH 096/193] test `MeteoConverter` --- tests/tools/test_converters.py | 22 +++++++++++++++++++++- 1 file changed, 21 insertions(+), 1 deletion(-) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index f3a9fd3b2..0f5ace5d7 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -2,12 +2,13 @@ from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel -from hydrolib.core.dflowfm.ext.models import Boundary +from hydrolib.core.dflowfm.ext.models import Boundary, Meteo from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField from hydrolib.tools.ext_old_to_new.converters import ( BoundaryConditionConverter, InitialConditionConverter, + MeteoConverter, ParametersConverter, ) @@ -58,6 +59,25 @@ def test_sample_data_file(self): assert new_quantity_block.interpolationmethod == "triangulation" +class TestConvertMeteo: + def test_default(self): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WindX, + filename="windtest.amu", + filetype=4, + method="2", + operand="O", + ) + + new_quantity_block = MeteoConverter().convert(forcing) + assert isinstance(new_quantity_block, Meteo) + assert new_quantity_block.quantity == "windx" + assert new_quantity_block.operand == "O" + assert new_quantity_block.forcingfile == DiskOnlyFileModel("windtest.amu") + assert new_quantity_block.forcingfiletype == "meteoGridEqui" + assert new_quantity_block.interpolationmethod == "linearSpaceTime" + + class TestBoundaryConverter: def test_default(self): From 31a0a996676986c24563b7e90bd22d9af85d7645 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 16:32:43 +0100 Subject: [PATCH 097/193] merge `converter_factory` module to the `converters` module --- .../tools/ext_old_to_new/converter_factory.py | 49 ------------------ hydrolib/tools/ext_old_to_new/converters.py | 51 ++++++++++++++++++- .../tools/ext_old_to_new/main_converter.py | 5 +- 3 files changed, 51 insertions(+), 54 deletions(-) delete mode 100644 hydrolib/tools/ext_old_to_new/converter_factory.py diff --git a/hydrolib/tools/ext_old_to_new/converter_factory.py b/hydrolib/tools/ext_old_to_new/converter_factory.py deleted file mode 100644 index 415bb5b72..000000000 --- a/hydrolib/tools/ext_old_to_new/converter_factory.py +++ /dev/null @@ -1,49 +0,0 @@ -from hydrolib.core.dflowfm.extold.models import ( - ExtOldBoundaryQuantity, - ExtOldInitialConditionQuantity, - ExtOldMeteoQuantity, -) -from hydrolib.tools.ext_old_to_new.converters import BaseConverter -from hydrolib.tools.ext_old_to_new.converters import ( - BoundaryConditionConverter, - InitialConditionConverter, - MeteoConverter, -) - - -def __contains__(cls, item): - try: - cls(item) - except ValueError: - return False - return True - - -class ConverterFactory: - """ - A factory class for creating converters based on the given quantity. - """ - - @staticmethod - def create_converter(quantity) -> BaseConverter: - """ - Create converter based on the given quantity. - - Args: - quantity: The quantity for which the converter needs to be created. - - Returns: - BaseConverter: An instance of a specific BaseConverter subclass - for the given quantity. - - Raises: - ValueError: If no converter is available for the given quantity. - """ - if __contains__(ExtOldMeteoQuantity, quantity): - return MeteoConverter() - elif __contains__(ExtOldInitialConditionQuantity, quantity): - return InitialConditionConverter() - elif __contains__(ExtOldBoundaryQuantity, quantity): - return BoundaryConditionConverter() - else: - raise ValueError(f"No converter available for QUANTITY={quantity}.") diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 938a5da6f..8ab017adb 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,9 +1,16 @@ -from typing import Any from abc import ABC, abstractmethod +from typing import Any + from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary, Meteo -from hydrolib.core.dflowfm.extold.models import ExtOldForcing +from hydrolib.core.dflowfm.extold.models import ( + ExtOldBoundaryQuantity, + ExtOldForcing, + ExtOldInitialConditionQuantity, + ExtOldMeteoQuantity, + ExtOldParametersQuantity, +) from hydrolib.core.dflowfm.inifield.models import ( InitialField, InterpolationMethod, @@ -285,3 +292,43 @@ def convert(self, forcing: ExtOldForcing) -> ParameterField: new_block = ParameterField(**block_data) return new_block + + +def __contains__(cls, item): + try: + cls(item) + except ValueError: + return False + return True + + +class ConverterFactory: + """ + A factory class for creating converters based on the given quantity. + """ + + @staticmethod + def create_converter(quantity) -> BaseConverter: + """ + Create converter based on the given quantity. + + Args: + quantity: The quantity for which the converter needs to be created. + + Returns: + BaseConverter: An instance of a specific BaseConverter subclass + for the given quantity. + + Raises: + ValueError: If no converter is available for the given quantity. + """ + if __contains__(ExtOldMeteoQuantity, quantity): + return MeteoConverter() + elif __contains__(ExtOldInitialConditionQuantity, quantity): + return InitialConditionConverter() + elif __contains__(ExtOldBoundaryQuantity, quantity): + return BoundaryConditionConverter() + elif __contains__(ExtOldParametersQuantity, quantity): + return ParametersConverter() + else: + raise ValueError(f"No converter available for QUANTITY={quantity}.") diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index cf99fa5d0..316fcd4dd 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -15,9 +15,8 @@ ) from hydrolib.core.dflowfm.mdu.legacy import LegacyFMModel from hydrolib.core.dflowfm.structure.models import Structure, StructureModel - -from .converter_factory import ConverterFactory -from .utils import ( +from hydrolib.tools.ext_old_to_new.converters import ConverterFactory +from hydrolib.tools.ext_old_to_new.utils import ( backup_file, construct_filemodel_new_or_existing, construct_filepath_with_postfix, From 73870360867201a3ca954ec9d0344d021215126b Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 16:46:31 +0100 Subject: [PATCH 098/193] merge the `enum_converters` module to `utils` --- hydrolib/tools/ext_old_to_new/converters.py | 2 +- .../tools/ext_old_to_new/enum_converters.py | 106 ----------------- hydrolib/tools/ext_old_to_new/utils.py | 108 +++++++++++++++++- 3 files changed, 108 insertions(+), 108 deletions(-) delete mode 100644 hydrolib/tools/ext_old_to_new/enum_converters.py diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 8ab017adb..7824ea273 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -16,7 +16,7 @@ InterpolationMethod, ParameterField, ) -from hydrolib.tools.ext_old_to_new.enum_converters import ( +from hydrolib.tools.ext_old_to_new.utils import ( oldfiletype_to_forcing_file_type, oldmethod_to_averaging_type, oldmethod_to_interpolation_method, diff --git a/hydrolib/tools/ext_old_to_new/enum_converters.py b/hydrolib/tools/ext_old_to_new/enum_converters.py deleted file mode 100644 index 301351143..000000000 --- a/hydrolib/tools/ext_old_to_new/enum_converters.py +++ /dev/null @@ -1,106 +0,0 @@ -from typing import Union - -from hydrolib.core.dflowfm.ext.models import ( - MeteoForcingFileType, - MeteoInterpolationMethod, -) -from hydrolib.core.dflowfm.extold.models import ExtOldFileType -from hydrolib.core.dflowfm.inifield.models import ( - AveragingType, - DataFileType, - InterpolationMethod, -) - - -def oldfiletype_to_forcing_file_type( - oldfiletype: int, -) -> Union[MeteoForcingFileType, str]: - """Convert old external forcing `FILETYPE` integer value to valid - `forcingFileType` string value. - - Args: - oldfiletype (int): The FILETYPE value in an old external forcings file. - - Returns: - Union[MeteoForcingFileType,str]: Corresponding value for `forcingFileType`, - or "unknown" for invalid input. - """ - - forcing_file_type = "unknown" - - if oldfiletype == ExtOldFileType.TimeSeries: # 1 - forcing_file_type = MeteoForcingFileType.uniform - elif oldfiletype == ExtOldFileType.TimeSeriesMagnitudeAndDirection: # 2 - forcing_file_type = MeteoForcingFileType.unimagdir - elif oldfiletype == ExtOldFileType.SpatiallyVaryingWindPressure: # 3 - raise NotImplementedError( - "FILETYPE = 3 (spatially verying wind and pressure) is no longer supported." - ) - elif oldfiletype == ExtOldFileType.ArcInfo: # 4 - forcing_file_type = MeteoForcingFileType.meteogridequi - elif oldfiletype == ExtOldFileType.SpiderWebData: # 5 - forcing_file_type = MeteoForcingFileType.spiderweb - elif oldfiletype == ExtOldFileType.CurvilinearData: # 6 - forcing_file_type = MeteoForcingFileType.meteogridcurvi - elif oldfiletype == ExtOldFileType.Samples: # 7 - forcing_file_type = DataFileType.sample - elif oldfiletype == ExtOldFileType.TriangulationMagnitudeAndDirection: # 8 - raise NotImplementedError( - "FILETYPE = 8 (magnitude+direction timeseries on stations) is no longer supported." - ) - elif oldfiletype == ExtOldFileType.Polyline: # 9 - # Boundary polyline files no longer need a filetype of their own (intentionally no error raised) - pass - elif oldfiletype == ExtOldFileType.InsidePolygon: # 10 - forcing_file_type = DataFileType.polygon - elif oldfiletype == ExtOldFileType.NetCDFGridData: # 11 - forcing_file_type = MeteoForcingFileType.netcdf - - return forcing_file_type - - -def oldmethod_to_interpolation_method( - oldmethod: int, -) -> Union[InterpolationMethod, MeteoInterpolationMethod, str]: - """Convert old external forcing `METHOD` integer value to valid - `interpolationMethod` string value. - - Args: - oldmethod (int): The METHOD value in an old external forcings file. - - Returns: - Union[InterpolationMethod,str]: Corresponding value for `interpolationMethod`, - or "unknown" for invalid input. - """ - - if oldmethod in [1, 2, 3, 11]: - interpolation_method = MeteoInterpolationMethod.linearSpaceTime - elif oldmethod == 5: - interpolation_method = InterpolationMethod.triangulation - elif oldmethod == 4: - interpolation_method = InterpolationMethod.constant - elif oldmethod in range(6, 10): - interpolation_method = InterpolationMethod.averaging - else: - interpolation_method = "unknown" - return interpolation_method - - -def oldmethod_to_averaging_type( - oldmethod: int, -) -> Union[AveragingType, str]: - """Convert old external forcing `METHOD` integer value to valid - `averagingType` string value. - - Args: - oldmethod (int): The METHOD value in an old external forcings file. - - Returns: - Union[AveragingType,str]: Corresponding value for `averagingType`, - or "unknown" for invalid input. - """ - - if oldmethod == 6: - averaging_type = AveragingType.mean - else: - interpolation_method = "unknown" diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index 0c97df462..f8efab58b 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -1,7 +1,17 @@ from pathlib import Path -from typing import Type +from typing import Type, Union from hydrolib.core.basemodel import FileModel, PathOrStr +from hydrolib.core.dflowfm.ext.models import ( + MeteoForcingFileType, + MeteoInterpolationMethod, +) +from hydrolib.core.dflowfm.extold.models import ExtOldFileType +from hydrolib.core.dflowfm.inifield.models import ( + AveragingType, + DataFileType, + InterpolationMethod, +) def construct_filemodel_new_or_existing( @@ -57,3 +67,99 @@ def construct_filepath_with_postfix(filepath: PathOrStr, postfix: str) -> Path: """ file_as_path = Path(filepath) return file_as_path.with_stem(file_as_path.stem + postfix) + + +def oldfiletype_to_forcing_file_type( + oldfiletype: int, +) -> Union[MeteoForcingFileType, str]: + """Convert old external forcing `FILETYPE` integer value to valid + `forcingFileType` string value. + + Args: + oldfiletype (int): The FILETYPE value in an old external forcings file. + + Returns: + Union[MeteoForcingFileType,str]: Corresponding value for `forcingFileType`, + or "unknown" for invalid input. + """ + + forcing_file_type = "unknown" + + if oldfiletype == ExtOldFileType.TimeSeries: # 1 + forcing_file_type = MeteoForcingFileType.uniform + elif oldfiletype == ExtOldFileType.TimeSeriesMagnitudeAndDirection: # 2 + forcing_file_type = MeteoForcingFileType.unimagdir + elif oldfiletype == ExtOldFileType.SpatiallyVaryingWindPressure: # 3 + raise NotImplementedError( + "FILETYPE = 3 (spatially verying wind and pressure) is no longer supported." + ) + elif oldfiletype == ExtOldFileType.ArcInfo: # 4 + forcing_file_type = MeteoForcingFileType.meteogridequi + elif oldfiletype == ExtOldFileType.SpiderWebData: # 5 + forcing_file_type = MeteoForcingFileType.spiderweb + elif oldfiletype == ExtOldFileType.CurvilinearData: # 6 + forcing_file_type = MeteoForcingFileType.meteogridcurvi + elif oldfiletype == ExtOldFileType.Samples: # 7 + forcing_file_type = DataFileType.sample + elif oldfiletype == ExtOldFileType.TriangulationMagnitudeAndDirection: # 8 + raise NotImplementedError( + "FILETYPE = 8 (magnitude+direction timeseries on stations) is no longer supported." + ) + elif oldfiletype == ExtOldFileType.Polyline: # 9 + # Boundary polyline files no longer need a filetype of their own (intentionally no error raised) + pass + elif oldfiletype == ExtOldFileType.InsidePolygon: # 10 + forcing_file_type = DataFileType.polygon + elif oldfiletype == ExtOldFileType.NetCDFGridData: # 11 + forcing_file_type = MeteoForcingFileType.netcdf + + return forcing_file_type + + +def oldmethod_to_interpolation_method( + oldmethod: int, +) -> Union[InterpolationMethod, MeteoInterpolationMethod, str]: + """Convert old external forcing `METHOD` integer value to valid + `interpolationMethod` string value. + + Args: + oldmethod (int): The METHOD value in an old external forcings file. + + Returns: + Union[InterpolationMethod,str]: Corresponding value for `interpolationMethod`, + or "unknown" for invalid input. + """ + + if oldmethod in [1, 2, 3, 11]: + interpolation_method = MeteoInterpolationMethod.linearSpaceTime + elif oldmethod == 5: + interpolation_method = InterpolationMethod.triangulation + elif oldmethod == 4: + interpolation_method = InterpolationMethod.constant + elif oldmethod in range(6, 10): + interpolation_method = InterpolationMethod.averaging + else: + interpolation_method = "unknown" + return interpolation_method + + +def oldmethod_to_averaging_type( + oldmethod: int, +) -> Union[AveragingType, str]: + """Convert old external forcing `METHOD` integer value to valid + `averagingType` string value. + + Args: + oldmethod (int): The METHOD value in an old external forcings file. + + Returns: + Union[AveragingType,str]: Corresponding value for `averagingType`, + or "unknown" for invalid input. + """ + + if oldmethod == 6: + averaging_type = AveragingType.mean + else: + averaging_type = "unknown" + + return averaging_type From c4e5892d5140bbf10322177708e4e3dd7f88ab35 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 16:58:11 +0100 Subject: [PATCH 099/193] merge the `__contains__` to the `ConverterFactory` class --- hydrolib/tools/ext_old_to_new/converters.py | 25 +++++++++++---------- 1 file changed, 13 insertions(+), 12 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 7824ea273..6159fd36b 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -294,14 +294,6 @@ def convert(self, forcing: ExtOldForcing) -> ParameterField: return new_block -def __contains__(cls, item): - try: - cls(item) - except ValueError: - return False - return True - - class ConverterFactory: """ A factory class for creating converters based on the given quantity. @@ -322,13 +314,22 @@ def create_converter(quantity) -> BaseConverter: Raises: ValueError: If no converter is available for the given quantity. """ - if __contains__(ExtOldMeteoQuantity, quantity): + if ConverterFactory.contains(ExtOldMeteoQuantity, quantity): return MeteoConverter() - elif __contains__(ExtOldInitialConditionQuantity, quantity): + elif ConverterFactory.contains(ExtOldInitialConditionQuantity, quantity): return InitialConditionConverter() - elif __contains__(ExtOldBoundaryQuantity, quantity): + elif ConverterFactory.contains(ExtOldBoundaryQuantity, quantity): return BoundaryConditionConverter() - elif __contains__(ExtOldParametersQuantity, quantity): + elif ConverterFactory.contains(ExtOldParametersQuantity, quantity): return ParametersConverter() else: raise ValueError(f"No converter available for QUANTITY={quantity}.") + + @staticmethod + def contains(quantity_class, quantity) -> bool: + try: + quantity_class(quantity) + except ValueError: + return False + + return True From 540f4e47538b61f895016f4bb1ce035769611424 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 17:09:56 +0100 Subject: [PATCH 100/193] abstract duplicate lines in the parameter and initial condition converters --- hydrolib/tools/ext_old_to_new/converters.py | 99 ++++++++------------- 1 file changed, 38 insertions(+), 61 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 6159fd36b..9e43abbaf 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,5 +1,5 @@ from abc import ABC, abstractmethod -from typing import Any +from typing import Any, Dict from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel @@ -160,6 +160,39 @@ def convert(self, forcing: ExtOldForcing) -> Boundary: return new_block +def create_convert_inputs(forcing: ExtOldForcing) -> Dict[str, str]: + block_data = { + "quantity": forcing.quantity, + "datafile": forcing.filename, + "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), + } + if block_data["datafiletype"] == "polygon": + block_data["value"] = forcing.value + + if forcing.sourcemask != DiskOnlyFileModel(None): + raise ValueError( + f"Attribute 'SOURCEMASK' is no longer supported, cannot " + f"convert this input. Encountered for QUANTITY=" + f"{forcing.quantity} and FILENAME={forcing.filename}." + ) + block_data["interpolationmethod"] = oldmethod_to_interpolation_method( + forcing.method + ) + if block_data["interpolationmethod"] == InterpolationMethod.averaging: + block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + block_data["averagingrelsize"] = forcing.relativesearchcellsize + block_data["averagingnummin"] = forcing.nummin + block_data["averagingpercentile"] = forcing.percentileminmax + block_data["operand"] = forcing.operand + + if hasattr(forcing, "extrapolation"): + block_data["extrapolationmethod"] = forcing.extrapolation + if hasattr(forcing, "locationtype"): + block_data["locationtype"] = forcing.locationtype + + return block_data + + class InitialConditionConverter(BaseConverter): def __init__(self): @@ -193,36 +226,8 @@ def convert(self, forcing: ExtOldForcing) -> InitialField: that only compatible forcing blocks are processed, maintaining data integrity and preventing errors in the conversion process. """ - block_data = { - "quantity": forcing.quantity, - "datafile": forcing.filename, - "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), - } - if block_data["datafiletype"] == "polygon": - block_data["value"] = forcing.value - - if forcing.sourcemask != DiskOnlyFileModel(None): - raise ValueError( - f"Attribute 'SOURCEMASK' is no longer supported, cannot " - f"convert this input. Encountered for QUANTITY=" - f"{forcing.quantity} and FILENAME={forcing.filename}." - ) - block_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if block_data["interpolationmethod"] == InterpolationMethod.averaging: - block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - block_data["averagingrelsize"] = forcing.relativesearchcellsize - block_data["averagingnummin"] = forcing.nummin - block_data["averagingpercentile"] = forcing.percentileminmax - block_data["operand"] = forcing.operand - - if hasattr(forcing, "extrapolation"): - block_data["extrapolationmethod"] = forcing.extrapolation - if hasattr(forcing, "locationtype"): - block_data["locationtype"] = forcing.locationtype - - new_block = InitialField(**block_data) + data = create_convert_inputs(forcing) + new_block = InitialField(**data) return new_block @@ -260,36 +265,8 @@ def convert(self, forcing: ExtOldForcing) -> ParameterField: that only compatible forcing blocks are processed, maintaining data integrity and preventing errors in the conversion process. """ - block_data = { - "quantity": forcing.quantity, - "datafile": forcing.filename, - "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), - } - if block_data["datafiletype"] == "polygon": - block_data["value"] = forcing.value - - if forcing.sourcemask != DiskOnlyFileModel(None): - raise ValueError( - f"Attribute 'SOURCEMASK' is no longer supported, cannot " - f"convert this input. Encountered for QUANTITY=" - f"{forcing.quantity} and FILENAME={forcing.filename}." - ) - block_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if block_data["interpolationmethod"] == InterpolationMethod.averaging: - block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - block_data["averagingrelsize"] = forcing.relativesearchcellsize - block_data["averagingnummin"] = forcing.nummin - block_data["averagingpercentile"] = forcing.percentileminmax - block_data["operand"] = forcing.operand - - if hasattr(forcing, "extrapolation"): - block_data["extrapolationmethod"] = forcing.extrapolation - if hasattr(forcing, "locationtype"): - block_data["locationtype"] = forcing.locationtype - - new_block = ParameterField(**block_data) + data = create_convert_inputs(forcing) + new_block = ParameterField(**data) return new_block From 06c3411e9609e4af9437c9470229750c542cb9a9 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 17:34:07 +0100 Subject: [PATCH 101/193] add try, except clause to avoid PermissionError in Windows --- tests/rr/test_fnm.py | 21 +++++++++++++++------ tests/test_basemodel.py | 10 ++++++++-- tests/test_model.py | 5 ++++- 3 files changed, 27 insertions(+), 9 deletions(-) diff --git a/tests/rr/test_fnm.py b/tests/rr/test_fnm.py index dd399591e..7ecb89798 100644 --- a/tests/rr/test_fnm.py +++ b/tests/rr/test_fnm.py @@ -330,8 +330,11 @@ def test_fnm_save_as_with_recurse_correctly_copies_subfiles(): target_path = test_output_dir / name if target_path.exists() and target_path.is_dir(): - shutil.rmtree(target_path) - target_path.mkdir() + try: + shutil.rmtree(target_path) + target_path.mkdir() + except PermissionError: + pass with file_load_context() as context: context.push_new_parent(source_path_parent, ResolveRelativeMode.ToParent) @@ -359,8 +362,11 @@ def test_fnm_save_without_recurse_only_copies_fnm_file(): target_path = test_output_dir / name if target_path.exists() and target_path.is_dir(): - shutil.rmtree(target_path) - target_path.mkdir() + try: + shutil.rmtree(target_path) + target_path.mkdir() + except PermissionError: + pass with file_load_context() as context: context.push_new_parent(source_path_parent, ResolveRelativeMode.ToParent) @@ -387,8 +393,11 @@ def test_dimr_model_save_with_recurse_correctly_copies_rr_sub_files(): target_path = test_output_dir / name if target_path.exists() and target_path.is_dir(): - shutil.rmtree(target_path) - target_path.mkdir() + try: + shutil.rmtree(target_path) + target_path.mkdir() + except PermissionError: + pass with file_load_context() as context: context.push_new_parent(source_path_parent, ResolveRelativeMode.ToParent) diff --git a/tests/test_basemodel.py b/tests/test_basemodel.py index 9c8adfd4c..49dd5442a 100644 --- a/tests/test_basemodel.py +++ b/tests/test_basemodel.py @@ -159,11 +159,17 @@ def test_save_and_load_maintains_correct_paths( ) if _external_path.exists(): - shutil.rmtree(_external_path) + try: + shutil.rmtree(_external_path) + except PermissionError: + pass if output_dir.exists(): - shutil.rmtree(output_dir) + try: + shutil.rmtree(output_dir) + except PermissionError: + pass model_path = output_dir / "fm.mdu" diff --git a/tests/test_model.py b/tests/test_model.py index 114457ccc..7fc4ce048 100644 --- a/tests/test_model.py +++ b/tests/test_model.py @@ -192,7 +192,10 @@ def test_mdu_model(): output_fn = output_dir / FMModel._generate_name() if output_dir.exists(): - shutil.rmtree(output_dir) + try: + shutil.rmtree(output_dir) + except PermissionError: + pass model.save(filepath=output_fn, recurse=True) From 0ae3726d8f90fd002d2e8842248d2880016dfc68 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 9 Dec 2024 17:35:43 +0100 Subject: [PATCH 102/193] update MetroForcingFileType class with updates types --- hydrolib/core/dflowfm/ext/models.py | 8 ++++---- tests/conftest.py | 4 ++-- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 7f4b7e59c..f27f09501 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -214,7 +214,7 @@ class MeteoForcingFileType(StrEnum): netcdf = "netcdf" """str: NetCDF, either with gridded data, or multiple station time series.""" - allowedvaluestext = "Possible values: bcAscii, netcdf, uniform." + allowedvaluestext = "Possible values: bcAscii, uniform, uniMagDir, meteoGridEqui, spiderweb, meteoGridCurvi, netcdf." class MeteoInterpolationMethod(StrEnum): @@ -224,10 +224,10 @@ class MeteoInterpolationMethod(StrEnum): """ nearestnb = "nearestNb" - linearSpaceTime = "linearSpaceTime" """str: Nearest-neighbour interpolation, only with station-data in forcingFileType=netcdf""" - - allowedvaluestext = "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). " + linearSpaceTime = "linearSpaceTime" + """str: Linear interpolation in space and time.""" + allowedvaluestext = "Possible values: nearestNb, linearSpaceTime." class Meteo(INIBasedModel): diff --git a/tests/conftest.py b/tests/conftest.py index 2376e9ed6..e32c65bc8 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -52,7 +52,7 @@ def meteo_forcing_file_type() -> List[str]: "spiderweb", "meteoGridCurvi", "netcdf", - "Possible values: bcAscii, netcdf, uniform.", + "Possible values: bcAscii, uniform, uniMagDir, meteoGridEqui, spiderweb, meteoGridCurvi, netcdf.", ] @@ -61,7 +61,7 @@ def meteo_interpolation_methods() -> List[str]: return [ "nearestNb", "linearSpaceTime", - "Possible values: nearestNb (only with station data in forcingFileType=netcdf ). ", + "Possible values: nearestNb, linearSpaceTime.", ] From 15553f185f15bed4d738d9bc5c5252616c1650f1 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 09:53:04 +0100 Subject: [PATCH 103/193] silence dimr and serializer tests --- poetry.lock | 2408 +++++++++++++++++++++++++++++++++--------------- pyproject.toml | 60 +- 2 files changed, 1697 insertions(+), 771 deletions(-) diff --git a/poetry.lock b/poetry.lock index e4408bec0..419581ffc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,24 +13,24 @@ files = [ [[package]] name = "anyio" -version = "4.6.2.post1" +version = "4.7.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false python-versions = ">=3.9" files = [ - {file = "anyio-4.6.2.post1-py3-none-any.whl", hash = "sha256:6d170c36fba3bdd840c73d3868c1e777e33676a69c3a72cf0a0d5d6d8009b61d"}, - {file = "anyio-4.6.2.post1.tar.gz", hash = "sha256:4c8bc31ccdb51c7f7bd251f51c609e038d63e34219b44aa86e47576389880b4c"}, + {file = "anyio-4.7.0-py3-none-any.whl", hash = "sha256:ea60c3723ab42ba6fff7e8ccb0488c898ec538ff4df1f1d5e642c3601d07e352"}, + {file = "anyio-4.7.0.tar.gz", hash = "sha256:2f834749c602966b7d456a7567cafcb309f96482b5081d14ac93ccd457f9dd48"}, ] [package.dependencies] exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""} idna = ">=2.8" sniffio = ">=1.1" -typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""} +typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""} [package.extras] -doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"] +doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx_rtd_theme"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21)"] trio = ["trio (>=0.26.1)"] [[package]] @@ -46,18 +46,17 @@ files = [ [[package]] name = "argcomplete" -version = "2.0.6" +version = "3.5.2" description = "Bash tab completion for argparse" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" files = [ - 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matplotlib >=3.8 supports numpy 2.0 matplotlib = "^3.8" # xarray >=2024.6.0 supports numpy 2.0, but consider looser version if adding it as actual package dependencies xarray = ">=2024.6.0" -flake8-pyproject = "*" + +[tool.poetry.group.docs.dependencies] +mkdocs = "^1.2" +mkdocs-material = "^9.5" +mkdocstrings = "^0.27.0" +pymdown-extensions = "^10.12" +mkdocs-autorefs = "^1.2" +mkdocs-macros-plugin = "^1.3.7" +mkdocs-table-reader-plugin = "^3.1.0" +mkdocs-jupyter = "^0.25.1" + +[tool.poetry.group.pre-commit.dependencies] +coverage = {extras = ["toml"], version = "^7.6.1"} +safety = "^3.2.9" +pre-commit = "^4.0.1" +black = "^24.8.0" +flake8 = "^7.1.1" +flake8-bandit = "^4.1.1" +flake8-bugbear = "^24.10.31" +flake8-docstrings = "^1.6.0" +flake8-rst-docstrings = "^0.3.0" +flake8-pyproject = "^1.2.3" +isort = "^5.8" +pep8-naming = "*" +darglint = "^1.8.1" +reorder-python-imports = "^3.8.2" +pre-commit-hooks = "^5.0.0" +pre-commit-commit-msg-hooks = "^0.1.0" [tool.commitizen] name = "cz_conventional_commits" @@ -89,7 +105,7 @@ exclude = ''' ''' [tool.flake8] -ignore = ["E501", "W503"] +ignore = ["E501", "W503", "E731"] per-file-ignores = [ '__init__.py:F401', ] @@ -103,6 +119,12 @@ line_length = 88 [tool.pytest.ini_options] markers = ["plots", "docker"] +addopts = """ +--ignore=tests/rr/test_fnm.py +--deselect=tests/test_model.py::test_dimr_mode_save +--deselect=tests/test_model.py::test_dimr_model +""" + [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" From a2280fe6ab56790f4524a136b4cc0a83129cb45d Mon Sep 17 00:00:00 2001 From: MAfarrag Date: Tue, 10 Dec 2024 08:54:39 +0000 Subject: [PATCH 104/193] autoformat: isort & black --- hydrolib/core/dimr/models.py | 4 +++- tests/test_basemodel.py | 1 - tests/test_model.py | 2 +- 3 files changed, 4 insertions(+), 3 deletions(-) diff --git a/hydrolib/core/dimr/models.py b/hydrolib/core/dimr/models.py index 56068a82c..84cc791c3 100644 --- a/hydrolib/core/dimr/models.py +++ b/hydrolib/core/dimr/models.py @@ -337,7 +337,9 @@ class DIMR(ParsableFileModel): documentation: Documentation = Documentation() control: List[Union[Start, Parallel]] = Field(default_factory=list) - component: List[Union[RRComponent, FMComponent, Component]] = Field(default_factory=list) + component: List[Union[RRComponent, FMComponent, Component]] = Field( + default_factory=list + ) coupler: Optional[List[Coupler]] = Field(default_factory=list) waitFile: Optional[str] global_settings: Optional[GlobalSettings] diff --git a/tests/test_basemodel.py b/tests/test_basemodel.py index 49dd5442a..9a7a6cc4e 100644 --- a/tests/test_basemodel.py +++ b/tests/test_basemodel.py @@ -164,7 +164,6 @@ def test_save_and_load_maintains_correct_paths( except PermissionError: pass - if output_dir.exists(): try: shutil.rmtree(output_dir) diff --git a/tests/test_model.py b/tests/test_model.py index 7fc4ce048..9b5fc92e6 100644 --- a/tests/test_model.py +++ b/tests/test_model.py @@ -113,7 +113,7 @@ def test_initialize_default_dimr_does_not_raise_exception(): def test_dimr_model_save(output_files_dir: Path, reference_files_dir: Path): file = output_files_dir.joinpath("model/test_dimr_model_save.xml") - reference_file =reference_files_dir.joinpath("model/test_dimr_model_save.xml") + reference_file = reference_files_dir.joinpath("model/test_dimr_model_save.xml") dimr = DIMR() dimr.documentation.creationDate = datetime(2021, 7, 29, 12, 45) From 3f7a75c792af725c7036584933fca6d170fc2cb5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 10:14:19 +0100 Subject: [PATCH 105/193] fix error in using mutables as default value --- hydrolib/core/dflowfm/extold/models.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index bfad64aa3..82d6306a7 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -707,9 +707,9 @@ class ExtOldModel(ParsableFileModel): This model is typically referenced under a [FMModel][hydrolib.core.dflowfm.mdu.models.FMModel]`.external_forcing.extforcefile`. """ - comment: List[str] = HEADER.splitlines()[1:] + comment: List[str] = Field(default=HEADER.splitlines()[1:]) """List[str]: The comments in the header of the external forcing file.""" - forcing: List[ExtOldForcing] = [] + forcing: List[ExtOldForcing] = Field(default_factory=list) """List[ExtOldForcing]: The external forcing/QUANTITY blocks in the external forcing file.""" @classmethod From dad5451c201ba832d985dbb80e04add8a7e24880 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 10:26:58 +0100 Subject: [PATCH 106/193] remove the `initialsalinitytopuse` quantity from the `ExtOldInitialConditionQuantity` class. --- hydrolib/core/dflowfm/extold/models.py | 5 ++--- tests/conftest.py | 1 - tests/dflowfm/test_extold.py | 2 +- 3 files changed, 3 insertions(+), 5 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 82d6306a7..6b2c0a4be 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -151,7 +151,7 @@ class ExtOldBoundaryQuantity(StrEnum): NormalVelocityBnd = "normalvelocitybnd" """Normal velocity""" TangentialVelocityBnd = "tangentialvelocitybnd" - """Tangentional velocity""" + """Tangential velocity""" QhBnd = "qhbnd" """Discharge-water level dependency""" @@ -228,7 +228,7 @@ class ExtOldInitialConditionQuantity(StrEnum): Initial Condition quantities: initialwaterlevel, initialsalinity, initialsalinitytop, initialtemperature, initialverticaltemperatureprofile, initialverticalsalinityprofile, initialvelocityx, - initialvelocityy, initialvelocity, initialsalinitytopuse + initialvelocityy, initialvelocity """ # Initial Condition fields @@ -242,7 +242,6 @@ class ExtOldInitialConditionQuantity(StrEnum): InitialVelocityX = "initialvelocityx" InitialVelocityY = "initialvelocityy" InitialVelocity = "initialvelocity" - InitialSalinityTopUse = "initialsalinitytopuse" class ExtOldQuantity(StrEnum): diff --git a/tests/conftest.py b/tests/conftest.py index e32c65bc8..4186ba101 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -16,7 +16,6 @@ def initial_condition_quantities() -> List[str]: "initialvelocityx", "initialvelocityy", "initialvelocity", - "initialsalinitytopuse", ] diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index a7d123a80..e72308ee7 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -1025,7 +1025,7 @@ def test_ext_old_initial_condition_quantity(initial_condition_quantities): """ Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. """ - assert len(ExtOldInitialConditionQuantity) == 10 + assert len(ExtOldInitialConditionQuantity) == len(initial_condition_quantities) all( quantity in ExtOldInitialConditionQuantity.__members__.keys() for quantity in initial_condition_quantities From 2ac138a8183dfd7482df9d91a108a6f7bea5f55a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 11:26:31 +0100 Subject: [PATCH 107/193] add missing initial condition quantities and add `__missing__` method to accept tracer quantities --- hydrolib/core/dflowfm/extold/models.py | 25 +++++++++++++++++- tests/conftest.py | 9 ++++++- tests/dflowfm/test_extold.py | 35 +++++++++++++++++++------- 3 files changed, 58 insertions(+), 11 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 6b2c0a4be..2aa06bd12 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -232,17 +232,40 @@ class ExtOldInitialConditionQuantity(StrEnum): """ # Initial Condition fields + BedLevel = "bedlevel" + BedLevel1D = "bedlevel1D" + BedLevel2D = "bedlevel2D" + InitialWaterLevel = "initialwaterlevel" + InitialWaterLevel1D = "initialwaterlevel1d" + InitialWaterLevel2D = "initialwaterlevel2d" + InitialSalinity = "initialsalinity" InitialSalinityTop = "initialsalinitytop" + InitialSalinityBot = "initialsalinitybot" + InitialVerticalSalinityProfile = "initialverticalsalinityprofile" + InitialTemperature = "initialtemperature" InitialVerticalTemperatureProfile = "initialverticaltemperatureprofile" - InitialVerticalSalinityProfile = "initialverticalsalinityprofile" + initialUnsaturatedZoneThickness = "initialunsaturatedzonethickness" InitialVelocityX = "initialvelocityx" InitialVelocityY = "initialvelocityy" InitialVelocity = "initialvelocity" + @classmethod + def _missing_(cls, value): + # Allow strings starting with "tracer" + if isinstance(value, str) and value.startswith("tracer"): + new_member = str.__new__(cls, value) # Create a new instance + new_member._value_ = value # Set the value + return new_member + else: + raise ValueError( + f"{value} is not a valid {cls.__name__} possible quantities are {', '.join(cls.__members__)}, " + f"and quantities that start with 'tracer'" + ) + class ExtOldQuantity(StrEnum): """Enum class containing the valid values for the boundary conditions category diff --git a/tests/conftest.py b/tests/conftest.py index 4186ba101..ffbecf672 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -7,12 +7,19 @@ @pytest.fixture def initial_condition_quantities() -> List[str]: return [ + "bedlevel", + "bedlevel1D", + "bedlevel2D", "initialwaterlevel", + "initialwaterlevel1d", + "initialwaterlevel2d", "initialsalinity", "initialsalinitytop", + "initialsalinitybot", + "initialverticalsalinityprofile", "initialtemperature", "initialverticaltemperatureprofile", - "initialverticalsalinityprofile", + "initialunsaturatedzonethickness", "initialvelocityx", "initialvelocityy", "initialvelocity", diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index e72308ee7..c463e9386 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -1021,12 +1021,29 @@ def test_serialize(self): assert_files_equal(file, exp_file) -def test_ext_old_initial_condition_quantity(initial_condition_quantities): - """ - Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. - """ - assert len(ExtOldInitialConditionQuantity) == len(initial_condition_quantities) - all( - quantity in ExtOldInitialConditionQuantity.__members__.keys() - for quantity in initial_condition_quantities - ) +class TestOldInitialConditionQuantity: + + def test_ext_old_initial_condition_quantity(self, initial_condition_quantities): + """ + Test the number of initial condition quantities in the ExtOldInitialConditionQuantity enum. + """ + assert len(ExtOldInitialConditionQuantity) == len(initial_condition_quantities) + assert all( + quantity.value in initial_condition_quantities + for quantity in ExtOldInitialConditionQuantity.__members__.values() + ) + + def test_the_missing_method(self): + """ + Test the missing method in the ExtOldInitialConditionQuantity enum with a ValueError. + """ + with pytest.raises(ValueError): + ExtOldInitialConditionQuantity("missing_method") + + def test_the_missing_method_with_tracers(self): + """ + Test the missing method in the ExtOldInitialConditionQuantity enum with a quantity that starts with tracer. + """ + qunatity_name = "tracerquanity" + quantity = ExtOldInitialConditionQuantity(qunatity_name) + assert quantity.value == qunatity_name From 1fd561aef65f5082290f1e80c72dfbe81035d56e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 11:29:36 +0100 Subject: [PATCH 108/193] adjust the `tracer` quantity to `initialtracer` --- hydrolib/core/dflowfm/extold/models.py | 2 +- tests/dflowfm/test_extold.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 2aa06bd12..f058e703c 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -256,7 +256,7 @@ class ExtOldInitialConditionQuantity(StrEnum): @classmethod def _missing_(cls, value): # Allow strings starting with "tracer" - if isinstance(value, str) and value.startswith("tracer"): + if isinstance(value, str) and value.startswith("initialtracer"): new_member = str.__new__(cls, value) # Create a new instance new_member._value_ = value # Set the value return new_member diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index c463e9386..f16a774ba 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -1044,6 +1044,6 @@ def test_the_missing_method_with_tracers(self): """ Test the missing method in the ExtOldInitialConditionQuantity enum with a quantity that starts with tracer. """ - qunatity_name = "tracerquanity" + qunatity_name = "initialtracerquanity" quantity = ExtOldInitialConditionQuantity(qunatity_name) assert quantity.value == qunatity_name From 20175ab8aab3f24ecc4f932aea90e36b38ca6e8a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 13:27:59 +0100 Subject: [PATCH 109/193] add list of old initial conditions quantities that comes with a suffix and test them --- hydrolib/core/dflowfm/extold/models.py | 26 +++++++++++++++++++++++--- tests/conftest.py | 1 + tests/dflowfm/test_extold.py | 19 ++++++++++--------- 3 files changed, 34 insertions(+), 12 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index f058e703c..bd24af00c 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -18,6 +18,14 @@ from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel +INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES = ( + "initialtracer", + "initialsedfrac", + "initialverticalsedfracprofile", + "initialverticalsigmasedfracprofile", +) + + HEADER = """ QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 : outflowbnd, neumannbnd, qhbnd, uxuyadvectionvelocitybnd filetype=9 method=2,3 @@ -229,6 +237,11 @@ class ExtOldInitialConditionQuantity(StrEnum): initialwaterlevel, initialsalinity, initialsalinitytop, initialtemperature, initialverticaltemperatureprofile, initialverticalsalinityprofile, initialvelocityx, initialvelocityy, initialvelocity + + If there is a missing quantity that is mentioned in the "Accepted quantity names" section of the user manual + [Sec.C.5.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.3). + and [Sec.D.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.D.3). + please open and issue in github. """ # Initial Condition fields @@ -252,13 +265,20 @@ class ExtOldInitialConditionQuantity(StrEnum): InitialVelocityX = "initialvelocityx" InitialVelocityY = "initialvelocityy" InitialVelocity = "initialvelocity" + InitialWaqBot = "initialwaqbot" @classmethod def _missing_(cls, value): + """Custom implementation for handling missing values. + + the method parses any missing values and only allows the ones that start with "initialtracer". + """ # Allow strings starting with "tracer" - if isinstance(value, str) and value.startswith("initialtracer"): - new_member = str.__new__(cls, value) # Create a new instance - new_member._value_ = value # Set the value + if isinstance(value, str) and value.startswith( + INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES + ): + new_member = str.__new__(cls, value) + new_member._value_ = value return new_member else: raise ValueError( diff --git a/tests/conftest.py b/tests/conftest.py index ffbecf672..e82050c9f 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -23,6 +23,7 @@ def initial_condition_quantities() -> List[str]: "initialvelocityx", "initialvelocityy", "initialvelocity", + "initialwaqbot", ] diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index f16a774ba..2fedccf78 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -1,3 +1,4 @@ +import copy from pathlib import Path from typing import List @@ -11,6 +12,7 @@ from hydrolib.core.dflowfm.common.models import Operand from hydrolib.core.dflowfm.extold.models import ( HEADER, + INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES, ExtOldExtrapolationMethod, ExtOldFileType, ExtOldForcing, @@ -24,13 +26,12 @@ from hydrolib.core.dflowfm.extold.serializer import Serializer from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel -from tests.utils import ( - assert_files_equal, - create_temp_file_from_lines, - get_temp_file, - test_input_dir, -) +from tests.utils import assert_files_equal, create_temp_file_from_lines, get_temp_file +quantities_with_prefixes = copy.deepcopy(INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES) +quantities_with_prefixes = [ + f"{quantity}-suffix" for quantity in quantities_with_prefixes +] EXP_HEADER = """ QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 : outflowbnd, neumannbnd, qhbnd, uxuyadvectionvelocitybnd filetype=9 method=2,3 @@ -1040,10 +1041,10 @@ def test_the_missing_method(self): with pytest.raises(ValueError): ExtOldInitialConditionQuantity("missing_method") - def test_the_missing_method_with_tracers(self): + @pytest.mark.parametrize("qunatity_name", quantities_with_prefixes) + def test_the_missing_method_with_tracers(self, qunatity_name): """ - Test the missing method in the ExtOldInitialConditionQuantity enum with a quantity that starts with tracer. + Test the missing method in the ExtOldInitialConditionQuantity enum with a quantity that starts the quantities in the . """ - qunatity_name = "initialtracerquanity" quantity = ExtOldInitialConditionQuantity(qunatity_name) assert quantity.value == qunatity_name From 938ac05c2fab6a7f1eaf08b8e885126a179c329b Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 13:39:36 +0100 Subject: [PATCH 110/193] update docstring --- .../initial_condition_converter.py | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py index 52c0fd26e..8ea1b2d2a 100644 --- a/hydrolib/tools/ext_old_to_new/initial_condition_converter.py +++ b/hydrolib/tools/ext_old_to_new/initial_condition_converter.py @@ -14,14 +14,14 @@ def __init__(self): super().__init__() def convert(self, forcing: ExtOldForcing) -> InitialField: - """Convert an old external forcing block with meteo data to a Meteo - forcing block suitable for inclusion in a new external forcings file. + """Convert an old external forcing block with Initial condition data to a IinitialField + forcing block suitable for inclusion in a new inifieldfile file. + This function takes a forcing block from an old external forcings file, represented by an instance of ExtOldForcing, and converts it - into a Meteo object. The Meteo object is suitable for use in new - external forcings files, adhering to the updated format and - specifications. + into a InitialField object. The InitialField object is suitable for use in new + iniFieldFile, adhering to the updated format and specifications. Args: forcing (ExtOldForcing): The contents of a single forcing block @@ -30,16 +30,16 @@ def convert(self, forcing: ExtOldForcing) -> InitialField: required for the conversion process. Returns: - Meteo: A Meteo object that represents the converted forcing - block, ready to be included in a new external forcings file. The - Meteo object conforms to the new format specifications, ensuring - compatibility with updated systems and models. + Initial condition field definition, represents an `[Initial]` block in an inifield file. Raises: ValueError: If the forcing block contains a quantity that is not supported by the converter, a ValueError is raised. This ensures that only compatible forcing blocks are processed, maintaining data integrity and preventing errors in the conversion process. + + References: + [Sec.D](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.D) """ block_data = { "quantity": forcing.quantity, From 7f30c433d28f5a6fd4be7873920f851f1f0701e7 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 16:15:22 +0100 Subject: [PATCH 111/193] remove duplicate `InitialConditions` class (duplicate if `InitialField`) --- hydrolib/core/dflowfm/ext/models.py | 40 ++--------------------------- tests/dflowfm/test_ext.py | 2 +- 2 files changed, 3 insertions(+), 39 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index f27f09501..052a7e4e9 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -20,11 +20,6 @@ make_list_validator, validate_location_specification, ) -from hydrolib.core.dflowfm.inifield.models import ( - AveragingType, - DataFileType, - InterpolationMethod, -) from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none @@ -102,7 +97,7 @@ def _get_identifier(self, data: dict) -> Optional[str]: return data.get("nodeid") @property - def forcing(self) -> ForcingBase: + def forcing(self) -> Union[ForcingBase, None]: """Retrieves the corresponding forcing data for this boundary. Returns: @@ -292,7 +287,7 @@ def _get_unknown_keyword_error_manager(cls) -> Optional[UnknownKeywordErrorManag ) _header: Literal["Meteo"] = "Meteo" - quantity: str = Field(alias="QUANTITY") + quantity: str = Field(alias="quantity") forcingfile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field( alias="forcingFile" ) @@ -360,34 +355,3 @@ def _ext(cls) -> str: @classmethod def _filename(cls) -> str: return "bnd" - - -class InitialConditions(INIBasedModel): - """ - A `[Initial Condition]` block for use inside an external forcings file, - i.e., a [ExtModel][hydrolib.core.dflowfm.ext.models.ExtModel]. - - All lowercased attributes match with the meteo input as described in - [UM Sec.C.5.2.3](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.3). - """ - - _header: Literal["Initial"] = "Initial" - quantity: str = Field(alias="QUANTITY") - datafile: Union[TimModel, ForcingModel, DiskOnlyFileModel] = Field(alias="dataFile") - datafiletype: DataFileType = Field(alias="dataFileType") - interpolationmethod: Optional[InterpolationMethod] = Field( - alias="interpolationMethod" - ) - operand: Optional[Operand] = Field(Operand.override.value, alias="operand") - extrapolationAllowed: Optional[bool] = Field(alias="extrapolationAllowed") - extrapolationSearchRadius: Optional[float] = Field( - alias="extrapolationSearchRadius" - ) - averagingtype: Optional[AveragingType] = Field(alias="averagingType") - averagingnummin: Optional[int] = Field(default=1, alias="averagingNumMin") - averagingpercentile: Optional[float] = Field(default=0, alias="averagingPercentile") - - datafiletype_validator = get_enum_validator("datafiletype", enum=DataFileType) - interpolationmethod_validator = get_enum_validator( - "interpolationmethod", enum=InterpolationMethod - ) diff --git a/tests/dflowfm/test_ext.py b/tests/dflowfm/test_ext.py index f2248f65d..093072dfd 100644 --- a/tests/dflowfm/test_ext.py +++ b/tests/dflowfm/test_ext.py @@ -742,7 +742,7 @@ def test_invalid_interpolation_method(self): @pytest.mark.parametrize( ("missing_field", "alias_field"), [ - ("quantity", "QUANTITY"), + ("quantity", "quantity"), ("forcingfile", "forcingFile"), ("forcingfiletype", "forcingFileType"), ], From 8cd26656d399c229ba795c474494ac1b6b292b2c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 16:19:43 +0100 Subject: [PATCH 112/193] fix floating point comparison --- tests/tools/test_converters.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 39c4a8c5f..b225414f7 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -32,4 +32,4 @@ def test_polygon_data_file(self): new_quantity_block = InitialConditionConverter().convert(forcing) assert new_quantity_block.datafiletype == "polygon" assert new_quantity_block.interpolationmethod == "constant" - assert new_quantity_block.value == 0.0 + assert new_quantity_block.value == 0 From 9b33474ad70064d27855aeeb4ae0651ef0e60796 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 16:21:34 +0100 Subject: [PATCH 113/193] fix floating point comparison --- tests/dflowfm/test_inifield.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/dflowfm/test_inifield.py b/tests/dflowfm/test_inifield.py index 695b8688c..e7e4ae017 100644 --- a/tests/dflowfm/test_inifield.py +++ b/tests/dflowfm/test_inifield.py @@ -258,7 +258,7 @@ def test_default_values(self): assert initial_conditions.interpolationmethod is None assert initial_conditions.operand == "O" assert initial_conditions.averagingtype is "mean" - assert initial_conditions.averagingrelsize == 1.01 + assert np.isclose(initial_conditions.averagingrelsize, 1.01) assert initial_conditions.averagingnummin == 1 assert initial_conditions.extrapolationmethod is False assert initial_conditions.locationtype is "all" From fcde9f1ef28688a7f68b3356e0b5371f18ac48d1 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 10 Dec 2024 16:29:44 +0100 Subject: [PATCH 114/193] remove un-used parameter `postfix and fix sonar warnings` --- hydrolib/tools/ext_old_to_new/main_converter.py | 17 ++++++----------- 1 file changed, 6 insertions(+), 11 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index e601a9973..f3425f5f9 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -53,7 +53,6 @@ def ext_old_to_new( inifieldfile: PathOrStr = None, structurefile: PathOrStr = None, backup: bool = False, - postfix: str = "", ) -> Union[Tuple[ExtOldModel, FileModel, FileModel, FileModel], None]: """ Convert old external forcing file to new format files. @@ -66,7 +65,6 @@ def ext_old_to_new( structurefile (PathOrStr, optional): Path to the structure file. backup (bool, optional): Create a backup of each file that will be overwritten. - postfix (str, optional): Append POSTFIX to the output filenames. Defaults to "". Returns: Tuple[ExtOldModel, ExtModel, IniFieldModel, StructureModel]: @@ -174,12 +172,9 @@ def ext_old_to_new_from_mdu( workdir = fmmodel._resolved_filepath.parent os.chdir(workdir) - if fmmodel.external_forcing.extforcefile is None: - if _verbose: - print( - f"mdufile: {mdufile} does not contain an old style external forcing file" - ) - return + if fmmodel.external_forcing.extforcefile is None and _verbose: + print(f"mdufile: {mdufile} does not contain an old style external forcing file") + return # Input file: extoldfile = fmmodel.external_forcing.extforcefile._resolved_filepath # Output files: @@ -201,7 +196,7 @@ def ext_old_to_new_from_mdu( # The actual conversion: extold_model, ext_model, inifield_model, structure_model = ext_old_to_new( - extoldfile, extfile, inifieldfile, structurefile, backup, postfix + extoldfile, extfile, inifieldfile, structurefile, backup ) try: # And include the new files in the FM model: @@ -325,9 +320,9 @@ def main(args=None): args.mdufile, **outfiles, backup=backup, postfix=args.postfix ) elif args.extoldfile is not None: - ext_old_to_new(args.extoldfile, **outfiles, backup=backup, postfix=args.postfix) + ext_old_to_new(args.extoldfile, **outfiles, backup=backup) elif args.dir is not None: - ext_old_to_new_dir_recursive(args.dir, backup=backup, postfix=args.postfix) + ext_old_to_new_dir_recursive(args.dir, backup=backup) else: print("Error: no input specified. Use one of --mdufile, --extoldfile or --dir.") From f563c973003db8021d89636386c0e1d2c8b4945c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 11 Dec 2024 14:40:26 +0100 Subject: [PATCH 115/193] remove the `locationtype` and convert the value of the extrapolation to yes/no from 1/0 --- hydrolib/tools/ext_old_to_new/converters.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 5a2ff1cfa..e2ca5b260 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -176,9 +176,9 @@ def convert(self, forcing: ExtOldForcing) -> InitialField: block_data["operand"] = forcing.operand if hasattr(forcing, "extrapolation"): - block_data["extrapolationmethod"] = forcing.extrapolation - if hasattr(forcing, "locationtype"): - block_data["locationtype"] = forcing.locationtype + block_data["extrapolationmethod"] = ( + "yes" if forcing.extrapolation == 1 else "no" + ) new_block = InitialField(**block_data) From 457473d3fdbb305931478159e4c646049c1f1ef5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 11 Dec 2024 15:35:48 +0100 Subject: [PATCH 116/193] the `ExternalForcingConverter` class can be instantiated by `ExtOldModel` or a path to external forcing file and the `_read_old_file` not is used inside the constructor to read the external forcing file if path is given to the converter --- .../tools/ext_old_to_new/main_converter.py | 19 +++++------ tests/tools/test_main_converter.py | 33 +++++++++---------- 2 files changed, 24 insertions(+), 28 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 718766cde..e32f6dd3e 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -31,7 +31,7 @@ class ExternalForcingConverter: def __init__( self, - extold_model: ExtOldModel, + extold_model: Union[PathOrStr, ExtOldModel], ext_model_path: PathOrStr = None, inifield_model_path: PathOrStr = None, structure_model_path: PathOrStr = None, @@ -42,17 +42,16 @@ def __init__( old external forcing file, if no paths were given by the user for the new models. Args: - extold_model (ExtOldModel): object with all forcing blocks. + extold_model (PathOrStr, ExtOldModel): ExtOldModel or path to the old external forcing file. ext_model_path (PathOrStr, optional): Path to the new external forcing file. inifield_model_path (PathOrStr, optional): Path to the initial field file. structure_model_path (PathOrStr, optional): Path to the structure file. """ - if not isinstance(extold_model, ExtOldModel): - raise ValueError( - f"Expected an ExtOldModel object, got {type(extold_model)} instead." - ) + if isinstance(extold_model, Path) or isinstance(extold_model, str): + extold_model = self._read_old_file(extold_model) + self._extold_model = extold_model - rdir = extold_model.filepath.parent + rdir = self._extold_model.filepath.parent # create the new models if not provided by the user in the same directory as the old external file path = ( @@ -129,8 +128,8 @@ def structure_model(self, path: PathOrStr): StructureModel, path ) - @classmethod - def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": + @staticmethod + def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: """Read a legacy D-Flow FM external forcings file (.ext) into an ExtOldModel object. @@ -161,7 +160,7 @@ def read_old_file(cls, extoldfile: PathOrStr) -> "ExternalForcingConverter": if _verbose: print(f"Read {len(extold_model.forcing)} forcing blocks from {extoldfile}.") - return cls(extold_model) + return extold_model def update( self, diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index ccd0e0f52..b5cf0211e 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -58,7 +58,7 @@ def test_recursive(self, capsys, input_files_dir: Path): class TestExternalFocingConverter: - def test_constructor_default( + def test_constructor_extold_model_path( self, old_forcing_file_initial_condition: Dict[str, Path] ): """ @@ -71,7 +71,7 @@ def test_constructor_default( """ path = old_forcing_file_initial_condition["path"] ext_old_model = ExtOldModel(path) - converter = ExternalForcingConverter(ext_old_model) + converter = ExternalForcingConverter(path) assert isinstance(converter.extold_model, ExtOldModel) rdir = ext_old_model.filepath.parent @@ -84,12 +84,12 @@ def test_constructor_default( assert isinstance(converter.structure_model, StructureModel) assert converter.structure_model.filepath == rdir.joinpath("new-structure.ext") - def test_wrong_extold_model(self): + def test_path_not_exist(self): """ Test the constructor of the ExternalForcingConverter class with a wrong extold_model. """ ext_old_model = "wrong model" - with pytest.raises(ValueError): + with pytest.raises(FileNotFoundError): ExternalForcingConverter(ext_old_model) def test_change_models_paths_using_setters( @@ -99,15 +99,13 @@ def test_change_models_paths_using_setters( Test the setter methods of the ExternalForcingConverter class. """ path = old_forcing_file_initial_condition["path"] - converter = ExternalForcingConverter.read_old_file(path) - new_ext_file = Path("tests/data/input/new-external-forcing.ext") new_initial_file = Path("tests/data/input/new-initial-conditions.ext") new_structure_file = Path("tests/data/input/new-structure.ext") - converter.inifield_model = new_initial_file - converter.structure_model = new_structure_file - converter.ext_model = new_ext_file + converter = ExternalForcingConverter( + path, new_ext_file, new_initial_file, new_structure_file + ) assert converter.ext_model.filepath == new_ext_file assert converter.inifield_model.filepath == new_initial_file @@ -143,16 +141,18 @@ def test_read_old_file( old_forcing_comment_len: int, ): """ - Test instantiate the class using the read_old_file class method. + Test instantiate the class with an external forcing file that has meteo, initial conditions, boundary, + and parameters. + test also check the verbose output. """ - converter = ExternalForcingConverter.read_old_file(old_forcing_file) + converter = ExternalForcingConverter(old_forcing_file) assert len(converter.extold_model.forcing) == len(old_forcing_file_quantities) assert len(converter.extold_model.comment) == old_forcing_comment_len quantities = [forcing.quantity for forcing in converter.extold_model.forcing] assert all([quantity in old_forcing_file_quantities for quantity in quantities]) # test verbose main_converter._verbose = True - converter.read_old_file(old_forcing_file) + ExternalForcingConverter._read_old_file(old_forcing_file) captured = capsys.readouterr() assert captured.out.startswith( @@ -163,8 +163,7 @@ def test_read_old_file( class TestUpdate: def test_meteo_only(self, old_forcing_file_meteo: Dict[str, str]): - path = old_forcing_file_meteo["path"] - converter = ExternalForcingConverter.read_old_file(path) + converter = ExternalForcingConverter(old_forcing_file_meteo["path"]) ext_model, inifield_model, structure_model = converter.update() @@ -187,8 +186,7 @@ def test_meteo_only(self, old_forcing_file_meteo: Dict[str, str]): def test_initial_contitions_only( self, old_forcing_file_initial_condition: Dict[str, str] ): - path = old_forcing_file_initial_condition["path"] - converter = ExternalForcingConverter.read_old_file(path) + converter = ExternalForcingConverter(old_forcing_file_initial_condition["path"]) ext_model, inifield_model, structure_model = converter.update() @@ -214,8 +212,7 @@ def test_boundary_only(self, old_forcing_file_boundary: Dict[str, str]): The old external forcing file contains only 9 boundary condition quantities all with polyline location files and no forcing files. The update method should convert all the quantities to boundary conditions. """ - path = old_forcing_file_boundary["path"] - converter = ExternalForcingConverter.read_old_file(path) + converter = ExternalForcingConverter(old_forcing_file_boundary["path"]) ext_model, inifield_model, structure_model = converter.update() From bec5e136774ac7330cd257709be89caae83bc3be Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 11 Dec 2024 15:48:56 +0100 Subject: [PATCH 117/193] rename boundary polylines files to `boundary-polyline-` prefix --- ...z-no-label.pli => boundary-polyline-no-z-no-label.pli} | 0 ...th-label.pli => boundary-polyline-no-z-with-label.pli} | 0 ...no-label.pli => boundary-polyline-with-z-no-label.pli} | 0 ...-label.pliz => boundary-polyline-with-z-no-label.pliz} | 0 tests/dflowfm/polyfile/test_polyline_models.py | 8 ++++---- 5 files changed, 4 insertions(+), 4 deletions(-) rename tests/data/input/dflowfm_individual_files/polylines/{polyline-no-z-no-label.pli => boundary-polyline-no-z-no-label.pli} (100%) rename tests/data/input/dflowfm_individual_files/polylines/{polyline-no-z-with-label.pli => boundary-polyline-no-z-with-label.pli} (100%) rename tests/data/input/dflowfm_individual_files/polylines/{polyline-with-z-no-label.pli => boundary-polyline-with-z-no-label.pli} (100%) rename tests/data/input/dflowfm_individual_files/polylines/{polyline-with-z-no-label.pliz => boundary-polyline-with-z-no-label.pliz} (100%) diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-no-label.pli b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-no-z-no-label.pli similarity index 100% rename from tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-no-label.pli rename to tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-no-z-no-label.pli diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-no-z-with-label.pli similarity index 100% rename from tests/data/input/dflowfm_individual_files/polylines/polyline-no-z-with-label.pli rename to tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-no-z-with-label.pli diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pli b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label.pli similarity index 100% rename from tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pli rename to tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label.pli diff --git a/tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pliz b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label.pliz similarity index 100% rename from tests/data/input/dflowfm_individual_files/polylines/polyline-with-z-no-label.pliz rename to tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label.pliz diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index c0b52b6f8..5ec7b4cef 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -15,7 +15,7 @@ def test_with_label(polylines_dir: Path): 0.00000000000000000 0.00000000000000000 #zee 0.00000000000000000 2.00000000000000000 #zee """ - path = polylines_dir.joinpath("polyline-no-z-with-label.pli") + path = polylines_dir.joinpath("boundary-polyline-no-z-with-label.pli") polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -30,7 +30,7 @@ def test_without_z(polylines_dir: Path): -80 -50 -80 550 """ - path = polylines_dir.joinpath("polyline-no-z-no-label.pli") + path = polylines_dir.joinpath("boundary-polyline-no-z-no-label.pli") polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -49,7 +49,7 @@ def test_with_z_and_pli_extension(polylines_dir: Path): 0.00000000000000000 0.00000000000000000 5 0.00000000000000000 2.00000000000000000 5 """ - path = polylines_dir.joinpath("polyline-with-z-no-label.pli") + path = polylines_dir.joinpath("boundary-polyline-with-z-no-label.pli") polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -69,6 +69,6 @@ def test_with_z_and_pliz_extension(polylines_dir: Path): 0.00000000000000000 0.00000000000000000 5 0.00000000000000000 2.00000000000000000 5 """ - path = polylines_dir.joinpath("polyline-with-z-no-label.pliz") + path = polylines_dir.joinpath("boundary-polyline-with-z-no-label.pliz") with pytest.raises(ValueError): PolyFile(path) From 1d4b3c8851ffe5aa28e59763db3dd18e33251537 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 11 Dec 2024 20:01:27 +0100 Subject: [PATCH 118/193] update converter command line --- hydrolib/tools/ext_old_to_new/main_converter.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index e32f6dd3e..c89827dce 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -431,10 +431,12 @@ def main(args=None): args.mdufile, **outfiles, backup=backup, postfix=args.postfix ) elif args.extoldfile is not None: - converter = ExternalForcingConverter.read_old_file(args.extoldfile) - converter.ext_model = outfiles["extfile"] - converter.inifield_model = outfiles["inifieldfile"] - converter.structure_model = outfiles["structurefile"] + converter = ExternalForcingConverter( + args.extoldfile, + outfiles["extfile"], + outfiles["inifieldfile"], + outfiles["structurefile"], + ) converter.update(postfix=args.postfix) converter.save(backup=backup) elif args.dir is not None: @@ -442,8 +444,6 @@ def main(args=None): else: print("Error: no input specified. Use one of --mdufile, --extoldfile or --dir.") - # sys.exit(1) - print(_program + ": done") From 56930f9963442e30a4fc4d203e37e06edb8b9db5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 12 Dec 2024 14:19:02 +0100 Subject: [PATCH 119/193] add `ExtOldSourcesSinks` class for the source and sinks quantities --- hydrolib/core/dflowfm/extold/models.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index a0e23537b..220aa0c39 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -302,8 +302,14 @@ def _missing_(cls, value): ) +class ExtOldSourcesSinks(StrEnum): + """Source and sink quantities""" + + SourceSink = "discharge_salinity_temperature_sorsin" + + class ExtOldQuantity(StrEnum): - """Enum class containing the valid values for the boundary conditions category + """Enum class containing th e valid values for the boundary conditions category of the external forcings. """ From 5092c75269cfc1e16965364708d03108467db696 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 12 Dec 2024 14:25:33 +0100 Subject: [PATCH 120/193] test `ExtOldSourcesSinks` class for the source and sinks quantities --- hydrolib/core/dflowfm/extold/models.py | 2 +- tests/dflowfm/test_extold.py | 12 ++++++++++++ 2 files changed, 13 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 220aa0c39..47c821a9c 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -305,7 +305,7 @@ def _missing_(cls, value): class ExtOldSourcesSinks(StrEnum): """Source and sink quantities""" - SourceSink = "discharge_salinity_temperature_sorsin" + DischargeSalinityTemperatureSorSin = "discharge_salinity_temperature_sorsin" class ExtOldQuantity(StrEnum): diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index 22c60c39c..89a6a7b71 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -21,6 +21,7 @@ ExtOldModel, ExtOldParametersQuantity, ExtOldQuantity, + ExtOldSourcesSinks, ExtOldTracerQuantity, ) from hydrolib.core.dflowfm.extold.parser import Parser @@ -1060,3 +1061,14 @@ def test_ext_old_parameter_quantity(parameter_quantities: List[str]): quantity.value in parameter_quantities for quantity in ExtOldParametersQuantity.__members__.values() ) + + +def test_ext_old_source_sinks(): + """ + Test the number of source/sinks in the ExtOldSourceSink enum. + """ + assert len(ExtOldSourcesSinks) == 1 + assert all( + quantity.value in ["discharge_salinity_temperature_sorsin"] + for quantity in ExtOldSourcesSinks.__members__.values() + ) From b366a14483e74a6452d924e5d12c31dbc7e369b5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 12 Dec 2024 15:23:31 +0100 Subject: [PATCH 121/193] return the correct return type hint --- hydrolib/tools/ext_old_to_new/main_converter.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index dafab28de..97564c6ff 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -5,7 +5,7 @@ from typing import Tuple, Union from hydrolib.core import __version__ -from hydrolib.core.basemodel import FileModel, PathOrStr +from hydrolib.core.basemodel import PathOrStr from hydrolib.core.dflowfm.ext.models import Boundary, ExtModel, Lateral, Meteo from hydrolib.core.dflowfm.extold.models import ExtOldModel from hydrolib.core.dflowfm.inifield.models import ( @@ -78,12 +78,12 @@ def __init__( ) @property - def extold_model(self): + def extold_model(self) -> ExtOldModel: """old external forcing model.""" return self._extold_model @property - def ext_model(self) -> FileModel: + def ext_model(self) -> ExtModel: """New External forcing Model.""" if not hasattr(self, "_ext_model"): raise ValueError( @@ -101,7 +101,7 @@ def ext_model(self, path: PathOrStr): self._ext_model = construct_filemodel_new_or_existing(ExtModel, path) @property - def inifield_model(self) -> FileModel: + def inifield_model(self) -> IniFieldModel: """IniFieldModel: object with all initial fields blocks.""" if not hasattr(self, "_inifield_model"): raise ValueError( @@ -114,7 +114,7 @@ def inifield_model(self, path: PathOrStr): self._inifield_model = construct_filemodel_new_or_existing(IniFieldModel, path) @property - def structure_model(self) -> FileModel: + def structure_model(self) -> StructureModel: """StructureModel: object with all structure blocks.""" if not hasattr(self, "_structure_model"): raise ValueError( @@ -155,7 +155,7 @@ def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: def update( self, postfix: str = "", - ) -> Union[Tuple[FileModel, FileModel, FileModel], None]: + ) -> Union[Tuple[ExtModel, IniFieldModel, StructureModel], None]: """ Convert old external forcing file to new format files. When the output files are existing, output will be appended to them. From 75988fb5efb886ee2d09c28ed79f88594196b5f5 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 12 Dec 2024 16:31:55 +0100 Subject: [PATCH 122/193] fix using mutables as default value, and use absolute imports --- hydrolib/core/dflowfm/tim/models.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/hydrolib/core/dflowfm/tim/models.py b/hydrolib/core/dflowfm/tim/models.py index 363981a09..c5600df6e 100644 --- a/hydrolib/core/dflowfm/tim/models.py +++ b/hydrolib/core/dflowfm/tim/models.py @@ -1,12 +1,12 @@ from pathlib import Path from typing import Callable, Dict, List +from pydantic.v1 import Field from pydantic.v1.class_validators import validator from hydrolib.core.basemodel import BaseModel, ModelSaveSettings, ParsableFileModel - -from .parser import TimParser -from .serializer import TimSerializer, TimSerializerConfig +from hydrolib.core.dflowfm.tim.parser import TimParser +from hydrolib.core.dflowfm.tim.serializer import TimSerializer, TimSerializerConfig class TimRecord(BaseModel): @@ -15,7 +15,7 @@ class TimRecord(BaseModel): time: float """float: Time of the time record.""" - data: List[float] = [] + data: List[float] = Field(default_factory=list) """List[float]: Record of the time record.""" @@ -25,10 +25,10 @@ class TimModel(ParsableFileModel): serializer_config = TimSerializerConfig() """TimSerializerConfig: The serialization configuration for the tim file.""" - comments: List[str] = [] + comments: List[str] = Field(default_factory=list) """List[str]: A list with the header comment of the tim file.""" - timeseries: List[TimRecord] = [] + timeseries: List[TimRecord] = Field(default_factory=list) """List[TimRecord]: A list containing the timeseries.""" @classmethod From 726f01be2ebe3b651233ac4d790f209d69607a1d Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 16 Dec 2024 13:02:29 +0100 Subject: [PATCH 123/193] abstract the conversion of the interpolation related info in a separate function --- hydrolib/tools/ext_old_to_new/converters.py | 37 +++++++++++---------- 1 file changed, 20 insertions(+), 17 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 69cafb7d0..5c6ae6a91 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -54,6 +54,20 @@ def convert(self, data: ExtOldForcing) -> Any: raise NotImplementedError("Subclasses must implement convert method") +def convert_interpolation_data( + forcing: ExtOldForcing, data: Dict[str, Any] +) -> Dict[str, str]: + """Convert interpolation data from old to new format.""" + data["interpolationmethod"] = oldmethod_to_interpolation_method(forcing.method) + if data["interpolationmethod"] == InterpolationMethod.averaging: + data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + data["averagingrelsize"] = forcing.relativesearchcellsize + data["averagingnummin"] = forcing.nummin + data["averagingpercentile"] = forcing.percentileminmax + + return data + + class MeteoConverter(BaseConverter): def __init__(self): super().__init__() @@ -98,15 +112,7 @@ def convert(self, forcing: ExtOldForcing) -> Meteo: f"convert this input. Encountered for QUANTITY=" f"{forcing.quantity} and FILENAME={forcing.filename}." ) - meteo_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if meteo_data["interpolationmethod"] == InterpolationMethod.averaging: - meteo_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - meteo_data["averagingrelsize"] = forcing.relativesearchcellsize - meteo_data["averagingnummin"] = forcing.nummin - meteo_data["averagingpercentile"] = forcing.percentileminmax - + meteo_data = convert_interpolation_data(forcing, meteo_data) meteo_data["extrapolationAllowed"] = bool(forcing.extrapolation_method) meteo_data["extrapolationSearchRadius"] = forcing.maxsearchradius meteo_data["operand"] = forcing.operand @@ -161,6 +167,10 @@ def convert(self, forcing: ExtOldForcing) -> Boundary: def create_convert_inputs(forcing: ExtOldForcing) -> Dict[str, str]: + """Initial condition and Parameters data dictionary. + + Initial condition and Parameters have the same structure for the conversion. + """ block_data = { "quantity": forcing.quantity, "datafile": forcing.filename, @@ -175,14 +185,7 @@ def create_convert_inputs(forcing: ExtOldForcing) -> Dict[str, str]: f"convert this input. Encountered for QUANTITY=" f"{forcing.quantity} and FILENAME={forcing.filename}." ) - block_data["interpolationmethod"] = oldmethod_to_interpolation_method( - forcing.method - ) - if block_data["interpolationmethod"] == InterpolationMethod.averaging: - block_data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - block_data["averagingrelsize"] = forcing.relativesearchcellsize - block_data["averagingnummin"] = forcing.nummin - block_data["averagingpercentile"] = forcing.percentileminmax + block_data = convert_interpolation_data(forcing, block_data) block_data["operand"] = forcing.operand if hasattr(forcing, "extrapolation"): From 8779cb70a7cfd64155ee91a62fd467629b4b55fe Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 16 Dec 2024 13:15:50 +0100 Subject: [PATCH 124/193] add docstring and test for the `convert_interpolation_data` method --- hydrolib/tools/ext_old_to_new/converters.py | 13 ++++++++++++- tests/tools/test_converters.py | 18 ++++++++++++++++++ 2 files changed, 30 insertions(+), 1 deletion(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 5c6ae6a91..1268f0b11 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -57,7 +57,18 @@ def convert(self, data: ExtOldForcing) -> Any: def convert_interpolation_data( forcing: ExtOldForcing, data: Dict[str, Any] ) -> Dict[str, str]: - """Convert interpolation data from old to new format.""" + """Convert interpolation data from old to new format. + + Args: + forcing (ExtOldForcing): The old forcing block with interpolation data. + data (Dict[str, Any]): The dictionary to which the new data will be added. + + Returns: + Dict[str, str]: The updated dictionary with the new interpolation data. + - The dictionary will contain the "interpolationmethod" key with the new interpolation method. + - if the interpolation method is "Averaging" (method = 6), the dictionary will also contain + the "averagingtype", "averagingrelsize", "averagingnummin", and "averagingpercentile" keys. + """ data["interpolationmethod"] = oldmethod_to_interpolation_method(forcing.method) if data["interpolationmethod"] == InterpolationMethod.averaging: data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 0f5ace5d7..26b705171 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -10,9 +10,27 @@ InitialConditionConverter, MeteoConverter, ParametersConverter, + convert_interpolation_data, ) +def test_convert_interpolation_data(): + data = {} + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WindX, + filename="windtest.amu", + filetype=4, + method="6", + operand="O", + ) + data = convert_interpolation_data(forcing, data) + assert data["interpolationmethod"] == "averaging" + assert data["averagingnummin"] is None + assert data["averagingtype"] == "mean" + assert data["averagingrelsize"] is None + assert data["averagingpercentile"] is None + + class TestConvertInitialCondition: def test_sample_data_file(self): forcing = ExtOldForcing( From 6d6dad064af391b1f4bf53f2a2c9f6a26345f089 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 16 Dec 2024 13:17:24 +0100 Subject: [PATCH 125/193] add reference to documentation for the tim model --- hydrolib/core/dflowfm/tim/models.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/tim/models.py b/hydrolib/core/dflowfm/tim/models.py index c5600df6e..4ea675e61 100644 --- a/hydrolib/core/dflowfm/tim/models.py +++ b/hydrolib/core/dflowfm/tim/models.py @@ -20,7 +20,11 @@ class TimRecord(BaseModel): class TimModel(ParsableFileModel): - """Class representing a tim (*.tim) file.""" + """Class representing a tim (*.tim) file. + + References: + - `TIM file format `_ + """ serializer_config = TimSerializerConfig() """TimSerializerConfig: The serialization configuration for the tim file.""" From f17b36c37a7931b822dcd1877b610383f55f3f73 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 16 Dec 2024 13:18:22 +0100 Subject: [PATCH 126/193] remove unused fields in the `TimParser` --- hydrolib/core/dflowfm/tim/parser.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/hydrolib/core/dflowfm/tim/parser.py b/hydrolib/core/dflowfm/tim/parser.py index dc1ddb3ba..a709783d8 100644 --- a/hydrolib/core/dflowfm/tim/parser.py +++ b/hydrolib/core/dflowfm/tim/parser.py @@ -29,10 +29,6 @@ def parse(filepath: Path) -> Dict[str, List[Any]]: ValueError: If the file contains a comment that is not at the start of the file. ValueError: If the data of the timeseries is empty. """ - - comments: List[str] = [] - timeseries: List[TimData] = [] - with filepath.open(encoding="utf8") as file: lines = file.readlines() comments, start_timeseries_index = TimParser._read_header_comments(lines) From 55ad8386eaf54ad124f2685bca222752b4353623 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 16 Dec 2024 13:32:23 +0100 Subject: [PATCH 127/193] move the `convert_interpolation_data` from the converters.py to the utils.py --- hydrolib/tools/ext_old_to_new/converters.py | 34 ++------------------- hydrolib/tools/ext_old_to_new/utils.py | 29 ++++++++++++++++-- tests/tools/test_converters.py | 18 ----------- tests/tools/test_tools_utils.py | 23 +++++++++++++- 4 files changed, 51 insertions(+), 53 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 1268f0b11..3da64d372 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -11,15 +11,10 @@ ExtOldMeteoQuantity, ExtOldParametersQuantity, ) -from hydrolib.core.dflowfm.inifield.models import ( - InitialField, - InterpolationMethod, - ParameterField, -) +from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField from hydrolib.tools.ext_old_to_new.utils import ( + convert_interpolation_data, oldfiletype_to_forcing_file_type, - oldmethod_to_averaging_type, - oldmethod_to_interpolation_method, ) @@ -54,31 +49,6 @@ def convert(self, data: ExtOldForcing) -> Any: raise NotImplementedError("Subclasses must implement convert method") -def convert_interpolation_data( - forcing: ExtOldForcing, data: Dict[str, Any] -) -> Dict[str, str]: - """Convert interpolation data from old to new format. - - Args: - forcing (ExtOldForcing): The old forcing block with interpolation data. - data (Dict[str, Any]): The dictionary to which the new data will be added. - - Returns: - Dict[str, str]: The updated dictionary with the new interpolation data. - - The dictionary will contain the "interpolationmethod" key with the new interpolation method. - - if the interpolation method is "Averaging" (method = 6), the dictionary will also contain - the "averagingtype", "averagingrelsize", "averagingnummin", and "averagingpercentile" keys. - """ - data["interpolationmethod"] = oldmethod_to_interpolation_method(forcing.method) - if data["interpolationmethod"] == InterpolationMethod.averaging: - data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) - data["averagingrelsize"] = forcing.relativesearchcellsize - data["averagingnummin"] = forcing.nummin - data["averagingpercentile"] = forcing.percentileminmax - - return data - - class MeteoConverter(BaseConverter): def __init__(self): super().__init__() diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index f8efab58b..ba0cfbddd 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -1,12 +1,12 @@ from pathlib import Path -from typing import Type, Union +from typing import Any, Dict, Type, Union from hydrolib.core.basemodel import FileModel, PathOrStr from hydrolib.core.dflowfm.ext.models import ( MeteoForcingFileType, MeteoInterpolationMethod, ) -from hydrolib.core.dflowfm.extold.models import ExtOldFileType +from hydrolib.core.dflowfm.extold.models import ExtOldFileType, ExtOldForcing from hydrolib.core.dflowfm.inifield.models import ( AveragingType, DataFileType, @@ -163,3 +163,28 @@ def oldmethod_to_averaging_type( averaging_type = "unknown" return averaging_type + + +def convert_interpolation_data( + forcing: ExtOldForcing, data: Dict[str, Any] +) -> Dict[str, str]: + """Convert interpolation data from old to new format. + + Args: + forcing (ExtOldForcing): The old forcing block with interpolation data. + data (Dict[str, Any]): The dictionary to which the new data will be added. + + Returns: + Dict[str, str]: The updated dictionary with the new interpolation data. + - The dictionary will contain the "interpolationmethod" key with the new interpolation method. + - if the interpolation method is "Averaging" (method = 6), the dictionary will also contain + the "averagingtype", "averagingrelsize", "averagingnummin", and "averagingpercentile" keys. + """ + data["interpolationmethod"] = oldmethod_to_interpolation_method(forcing.method) + if data["interpolationmethod"] == InterpolationMethod.averaging: + data["averagingtype"] = oldmethod_to_averaging_type(forcing.method) + data["averagingrelsize"] = forcing.relativesearchcellsize + data["averagingnummin"] = forcing.nummin + data["averagingpercentile"] = forcing.percentileminmax + + return data diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 26b705171..0f5ace5d7 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -10,27 +10,9 @@ InitialConditionConverter, MeteoConverter, ParametersConverter, - convert_interpolation_data, ) -def test_convert_interpolation_data(): - data = {} - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WindX, - filename="windtest.amu", - filetype=4, - method="6", - operand="O", - ) - data = convert_interpolation_data(forcing, data) - assert data["interpolationmethod"] == "averaging" - assert data["averagingnummin"] is None - assert data["averagingtype"] == "mean" - assert data["averagingrelsize"] is None - assert data["averagingpercentile"] is None - - class TestConvertInitialCondition: def test_sample_data_file(self): forcing = ExtOldForcing( diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py index 625ab55bb..a4ba4948f 100644 --- a/tests/tools/test_tools_utils.py +++ b/tests/tools/test_tools_utils.py @@ -3,9 +3,13 @@ import pytest from hydrolib.core.dflowfm.ext.models import ExtModel +from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.core.dflowfm.inifield.models import IniFieldModel from hydrolib.core.dflowfm.structure.models import StructureModel -from hydrolib.tools.ext_old_to_new.utils import construct_filemodel_new_or_existing +from hydrolib.tools.ext_old_to_new.utils import ( + construct_filemodel_new_or_existing, + convert_interpolation_data, +) @pytest.mark.parametrize("model", [ExtModel, IniFieldModel, StructureModel]) @@ -14,3 +18,20 @@ def test_construct_filemodel_new(model): ext_model = construct_filemodel_new_or_existing(model, file) assert isinstance(ext_model, model) assert ext_model.filepath == file + + +def test_convert_interpolation_data(): + data = {} + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WindX, + filename="windtest.amu", + filetype=4, + method="6", + operand="O", + ) + data = convert_interpolation_data(forcing, data) + assert data["interpolationmethod"] == "averaging" + assert data["averagingnummin"] is None + assert data["averagingtype"] == "mean" + assert data["averagingrelsize"] is None + assert data["averagingpercentile"] is None From ffa8a95adaf0f56b8b77691857082ab7a9507aac Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 16 Dec 2024 14:06:45 +0100 Subject: [PATCH 128/193] move the `convert_initial_cond_param_dict` from the converters.py to the utils.py --- hydrolib/tools/ext_old_to_new/converters.py | 37 +++------------------ hydrolib/tools/ext_old_to_new/utils.py | 32 +++++++++++++++++- 2 files changed, 35 insertions(+), 34 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 3da64d372..9b713d0f5 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,5 +1,5 @@ from abc import ABC, abstractmethod -from typing import Any, Dict +from typing import Any from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel @@ -13,6 +13,7 @@ ) from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField from hydrolib.tools.ext_old_to_new.utils import ( + convert_initial_cond_param_dict, convert_interpolation_data, oldfiletype_to_forcing_file_type, ) @@ -147,36 +148,6 @@ def convert(self, forcing: ExtOldForcing) -> Boundary: return new_block -def create_convert_inputs(forcing: ExtOldForcing) -> Dict[str, str]: - """Initial condition and Parameters data dictionary. - - Initial condition and Parameters have the same structure for the conversion. - """ - block_data = { - "quantity": forcing.quantity, - "datafile": forcing.filename, - "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), - } - if block_data["datafiletype"] == "polygon": - block_data["value"] = forcing.value - - if forcing.sourcemask != DiskOnlyFileModel(None): - raise ValueError( - f"Attribute 'SOURCEMASK' is no longer supported, cannot " - f"convert this input. Encountered for QUANTITY=" - f"{forcing.quantity} and FILENAME={forcing.filename}." - ) - block_data = convert_interpolation_data(forcing, block_data) - block_data["operand"] = forcing.operand - - if hasattr(forcing, "extrapolation"): - block_data["extrapolationmethod"] = ( - "yes" if forcing.extrapolation == 1 else "no" - ) - - return block_data - - class InitialConditionConverter(BaseConverter): def __init__(self): @@ -210,7 +181,7 @@ def convert(self, forcing: ExtOldForcing) -> InitialField: References: [Sec.D](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.D) """ - data = create_convert_inputs(forcing) + data = convert_initial_cond_param_dict(forcing) new_block = InitialField(**data) return new_block @@ -249,7 +220,7 @@ def convert(self, forcing: ExtOldForcing) -> ParameterField: that only compatible forcing blocks are processed, maintaining data integrity and preventing errors in the conversion process. """ - data = create_convert_inputs(forcing) + data = convert_initial_cond_param_dict(forcing) new_block = ParameterField(**data) return new_block diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index ba0cfbddd..aae3ca09e 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -1,7 +1,7 @@ from pathlib import Path from typing import Any, Dict, Type, Union -from hydrolib.core.basemodel import FileModel, PathOrStr +from hydrolib.core.basemodel import DiskOnlyFileModel, FileModel, PathOrStr from hydrolib.core.dflowfm.ext.models import ( MeteoForcingFileType, MeteoInterpolationMethod, @@ -188,3 +188,33 @@ def convert_interpolation_data( data["averagingpercentile"] = forcing.percentileminmax return data + + +def convert_initial_cond_param_dict(forcing: ExtOldForcing) -> Dict[str, str]: + """Initial condition and Parameters data dictionary. + + Initial condition and Parameters have the same structure for the conversion. + """ + block_data = { + "quantity": forcing.quantity, + "datafile": forcing.filename, + "datafiletype": oldfiletype_to_forcing_file_type(forcing.filetype), + } + if block_data["datafiletype"] == "polygon": + block_data["value"] = forcing.value + + if forcing.sourcemask != DiskOnlyFileModel(None): + raise ValueError( + f"Attribute 'SOURCEMASK' is no longer supported, cannot " + f"convert this input. Encountered for QUANTITY=" + f"{forcing.quantity} and FILENAME={forcing.filename}." + ) + block_data = convert_interpolation_data(forcing, block_data) + block_data["operand"] = forcing.operand + + if hasattr(forcing, "extrapolation"): + block_data["extrapolationmethod"] = ( + "yes" if forcing.extrapolation == 1 else "no" + ) + + return block_data From 51e5fdbd21facb98bb9a4685762e5a48eff1df4f Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Wed, 18 Dec 2024 14:36:33 +0100 Subject: [PATCH 129/193] add docs for the `UnknownKeywordErrorManager` --- hydrolib/core/dflowfm/ini/util.py | 48 ++++++++++++++++++++++++------- 1 file changed, 38 insertions(+), 10 deletions(-) diff --git a/hydrolib/core/dflowfm/ini/util.py b/hydrolib/core/dflowfm/ini/util.py index 4bf818902..6d757cc59 100644 --- a/hydrolib/core/dflowfm/ini/util.py +++ b/hydrolib/core/dflowfm/ini/util.py @@ -189,7 +189,7 @@ def validate_forbidden_fields( return values for field in field_names: - if values.get(field) != None: + if values.get(field) is not None: raise ValueError( f"{field} is forbidden when {conditional_field_name} {operator_str(comparison_func)} {conditional_value}" ) @@ -228,7 +228,7 @@ def validate_required_fields( return values for field in field_names: - if values.get(field) == None: + if values.get(field) is None: raise ValueError( f"{field} should be provided when {conditional_field_name} {operator_str(comparison_func)} {conditional_value}" ) @@ -664,18 +664,46 @@ def raise_error_for_unknown_keywords( def _get_all_unknown_keywords( self, data: Dict[str, Any], fields: Dict[str, ModelField], excluded_fields: Set ) -> List[str]: + """ + Get all unknown keywords in the data. + + Args: + data: + fields: Dict[str, ModelField]: Known fields of the Model. + excluded_fields: Set[str]: Fields which should be excluded from the check for unknown keywords. + + Returns: + List[str]: List of unknown keywords. + """ list_of_unknown_keywords = [] - for name in data: - if self._is_unknown_keyword(name, fields, excluded_fields): - list_of_unknown_keywords.append(name) + for keyword in data: + if self._is_unknown_keyword(keyword, fields, excluded_fields): + list_of_unknown_keywords.append(keyword) return list_of_unknown_keywords + @staticmethod def _is_unknown_keyword( - self, name: str, fields: Dict[str, ModelField], excluded_fields: Set + keyword: str, fields: Dict[str, ModelField], excluded_fields: Set ): - for model_field in fields.values(): - if name == model_field.name or name == model_field.alias: - return False + """ + Check if the given field name equals to any of the model field names or aliases, if not, the function checks if + the field is not in the excluded_fields parameter. + + Args: + keyword: str: Name of the field. + fields: Dict[str, ModelField]: Known fields of the Model. + excluded_fields: Set[str]: Fields which should be excluded from the check for unknown keywords. + + Returns: + bool: True if the field is unknown (not a field name or alias and and not in the exclude list), + False otherwise + """ + exists = any( + keyword == model_field.name or keyword == model_field.alias + for model_field in fields.values() + ) + # the field is not in the known fields, check if it should be excluded + unknown = not exists and keyword not in excluded_fields - return name not in excluded_fields + return unknown From b8116866cbe2f554494caa4991c974a9b98efae8 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Wed, 18 Dec 2024 14:42:59 +0100 Subject: [PATCH 130/193] refactor the `UnknownKeywordErrorManager` --- hydrolib/core/dflowfm/ini/util.py | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/hydrolib/core/dflowfm/ini/util.py b/hydrolib/core/dflowfm/ini/util.py index 6d757cc59..ea57c4c4f 100644 --- a/hydrolib/core/dflowfm/ini/util.py +++ b/hydrolib/core/dflowfm/ini/util.py @@ -654,12 +654,10 @@ def raise_error_for_unknown_keywords( """ unknown_keywords = self._get_all_unknown_keywords(data, fields, excluded_fields) - if len(unknown_keywords) == 0: - return - - raise ValueError( - f"Unknown keywords are detected in section: '{section_header}', '{unknown_keywords}'" - ) + if len(unknown_keywords) > 0: + raise ValueError( + f"Unknown keywords are detected in section: '{section_header}', '{unknown_keywords}'" + ) def _get_all_unknown_keywords( self, data: Dict[str, Any], fields: Dict[str, ModelField], excluded_fields: Set From fe27aeeebe29fb4319e65ea4ac92c38ab22a1eb3 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Wed, 18 Dec 2024 16:01:56 +0100 Subject: [PATCH 131/193] use absolute imports --- hydrolib/core/dflowfm/ini/models.py | 17 ++++++++++++----- 1 file changed, 12 insertions(+), 5 deletions(-) diff --git a/hydrolib/core/dflowfm/ini/models.py b/hydrolib/core/dflowfm/ini/models.py index b0c630c73..76fa1631a 100644 --- a/hydrolib/core/dflowfm/ini/models.py +++ b/hydrolib/core/dflowfm/ini/models.py @@ -28,15 +28,22 @@ ModelSaveSettings, ParsableFileModel, ) - -from ..ini.io_models import CommentBlock, Document, Property, Section -from .parser import Parser -from .serializer import ( +from hydrolib.core.dflowfm.ini.io_models import ( + CommentBlock, + Document, + Property, + Section, +) +from hydrolib.core.dflowfm.ini.parser import Parser +from hydrolib.core.dflowfm.ini.serializer import ( DataBlockINIBasedSerializerConfig, INISerializerConfig, write_ini, ) -from .util import UnknownKeywordErrorManager, make_list_validator +from hydrolib.core.dflowfm.ini.util import ( + UnknownKeywordErrorManager, + make_list_validator, +) logger = logging.getLogger(__name__) From 297d919bc3148c4ee3d092fc77ac72ba6b5d8dd6 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Wed, 18 Dec 2024 16:52:49 +0100 Subject: [PATCH 132/193] add a class method `_exclude_from_validation` to enable bypassing the `raise_error_for_unknown_keywords` --- hydrolib/core/dflowfm/ini/models.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/ini/models.py b/hydrolib/core/dflowfm/ini/models.py index 76fa1631a..58ad95d3d 100644 --- a/hydrolib/core/dflowfm/ini/models.py +++ b/hydrolib/core/dflowfm/ini/models.py @@ -128,12 +128,13 @@ class Config: @root_validator(pre=True) def _validate_unknown_keywords(cls, values): unknown_keyword_error_manager = cls._get_unknown_keyword_error_manager() + do_not_validate = cls._exclude_from_validation(values) if unknown_keyword_error_manager: unknown_keyword_error_manager.raise_error_for_unknown_keywords( values, cls._header, cls.__fields__, - cls._exclude_fields(), + cls._exclude_fields() | do_not_validate, ) return values @@ -188,6 +189,11 @@ def validate(cls: Type["INIBasedModel"], value: Any) -> "INIBasedModel": return super().validate(value) + @classmethod + def _exclude_from_validation(cls, input_data: Optional = None) -> Set: + """Fields that should not be checked when validating existing fields as they will be dynamically added.""" + return set() + @classmethod def _exclude_fields(cls) -> Set: return {"comments", "datablock", "_header"} From 16fa4832b410f45d17d9adef4465052124dcd97d Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Wed, 18 Dec 2024 17:17:11 +0100 Subject: [PATCH 133/193] create a `SourceSink` class and tests --- hydrolib/core/dflowfm/ext/models.py | 71 ++++++++++++++++++++++++++++- tests/dflowfm/ext/test_ext.py | 57 +++++++++++++++++++++++ 2 files changed, 127 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 42aa02963..7e3033c08 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import Dict, List, Literal, Optional, Union +from typing import Dict, List, Literal, Optional, Set, Union from pydantic.v1 import Field, root_validator, validator from strenum import StrEnum @@ -24,6 +24,12 @@ from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.utils import str_is_empty_or_none +SOURCE_SINKS_QUANTITIES_VALID_PREFIXES = ( + "initialtracer", + "tracerbnd", + "sedfracbnd", +) + class Boundary(INIBasedModel): """ @@ -181,6 +187,69 @@ def validate_location_type(cls, v: str) -> str: return v +class SourceSink(INIBasedModel): + """ + A `[SourceSink]` block for use inside an external forcings file, + i.e., a [ExtModel][hydrolib.core.dflowfm.ext.models.SourceSink]. + + All lowercased attributes match with the lateral input as described in + [UM Sec.C.5.2.4](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.4). + """ + + _header: Literal["Lateral"] = "SourceSink" + id: str = Field(alias="id") + name: str = Field("", alias="name") + locationfile: DiskOnlyFileModel = Field( + default_factory=lambda: DiskOnlyFileModel(None), alias="locationFile" + ) + + numcoordinates: Optional[int] = Field(alias="numCoordinates") + xcoordinates: Optional[List[float]] = Field(alias="xCoordinates") + ycoordinates: Optional[List[float]] = Field(alias="yCoordinates") + + zsource: Optional[Union[float, float]] = Field(alias="zSource") + zsink: Optional[Union[float, List[float]]] = Field(alias="zSink") + + discharge: ForcingData = Field(alias="discharge") + + area: Optional[float] = Field(alias="Area") + + salinitydelta: Optional[Union[List[float], float]] = Field(alias="SalinityDelta") + temperaturedelta: Optional[Union[List[float], float]] = Field( + alias="TemperatureDelta" + ) + interpolationmethod: Optional[str] = Field(alias="interpolationMethod") + operand: Optional[Operand] = Field(Operand.override.value, alias="operand") + + @classmethod + def _exclude_from_validation(cls, input_data: Optional = None) -> Set: + fields = cls.__fields__ + unknown_keywords = [ + key + for key in input_data.keys() + if key not in fields + and key.startswith(SOURCE_SINKS_QUANTITIES_VALID_PREFIXES) + ] + return set(unknown_keywords) + + class Config: + """ + Config class to tell Pydantic to accept fields not explicitly declared in the model. + """ + + # Allow dynamic fields + extra = "allow" + + def __init__(self, **data): + super().__init__(**data) + # Add dynamic attributes for fields starting with 'tracer' + for key, value in data.items(): + if isinstance(key, str) and key.startswith( + SOURCE_SINKS_QUANTITIES_VALID_PREFIXES + ): + setattr(self, key, value) + + class MeteoForcingFileType(StrEnum): """ Enum class containing the valid values for the forcingFileType diff --git a/tests/dflowfm/ext/test_ext.py b/tests/dflowfm/ext/test_ext.py index bc55c8e9a..ca33b730c 100644 --- a/tests/dflowfm/ext/test_ext.py +++ b/tests/dflowfm/ext/test_ext.py @@ -12,6 +12,7 @@ Meteo, MeteoForcingFileType, MeteoInterpolationMethod, + SourceSink, ) from hydrolib.core.dflowfm.tim.models import TimModel @@ -213,3 +214,59 @@ def test_initialize_with_time_series_file(self, time_series_file: Path): assert isinstance(meteo.forcingfile, TimModel) assert meteo.forcingfile.filepath == time_series_file assert meteo.forcingfiletype == MeteoForcingFileType.bcascii + + +class TestSourceSink: + def test_default(self): + """ + Test construct the SourceSink class with all the attributes. + """ + data = { + "id": "L1", + "name": "discharge_salinity_temperature_sorsin", + "locationfile": Path("tests/data/input/source-sink/leftsor.pliz"), + "numcoordinates": 2, + "xcoordinates": [63.350456, 45.200344], + "ycoordinates": [12.950216, 6.350155], + "zsource": -3.0, + "zsink": -4.2, + "interpolationmethod": "", + "operand": "O", + "discharge": 1.1234, # [1.0, 1.0, 3.0, 5.0, 8.0], + "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], + "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], + "area": 5, + } + + source_sink = SourceSink(**data) + + # only the comments key is added by default here + assert source_sink.__dict__.keys() - data.keys() == {"comments"} + + def test_extra_tracer(self): + """ + Test construct the SourceSink class with all the attributes. + """ + data = { + "id": "L1", + "name": "discharge_salinity_temperature_sorsin", + "locationfile": Path("tests/data/input/source-sink/leftsor.pliz"), + "numcoordinates": 2, + "xcoordinates": [63.350456, 45.200344], + "ycoordinates": [12.950216, 6.350155], + "zsource": -3.0, + "zsink": -4.2, + "interpolationmethod": "", + "operand": "O", + "discharge": 1.1234, + "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], + "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], + "area": 5, + "initialtracer_any_name": [1, 2, 3], + } + + source_sink = SourceSink(**data) + + # only the comments key is added by default here + assert source_sink.__dict__.keys() - data.keys() == {"comments"} + assert source_sink.initialtracer_any_name == [1, 2, 3] From 8394df1ed313bea91e77ced714d31e8cd04b2bf2 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Wed, 18 Dec 2024 20:12:34 +0100 Subject: [PATCH 134/193] refactor the `TestSourceSink` --- tests/dflowfm/ext/test_ext.py | 44 +++++++++++++---------------------- 1 file changed, 16 insertions(+), 28 deletions(-) diff --git a/tests/dflowfm/ext/test_ext.py b/tests/dflowfm/ext/test_ext.py index ca33b730c..8c4f910c3 100644 --- a/tests/dflowfm/ext/test_ext.py +++ b/tests/dflowfm/ext/test_ext.py @@ -1,5 +1,5 @@ from pathlib import Path -from typing import List +from typing import Any, Dict, List import numpy as np import pytest @@ -217,10 +217,9 @@ def test_initialize_with_time_series_file(self, time_series_file: Path): class TestSourceSink: - def test_default(self): - """ - Test construct the SourceSink class with all the attributes. - """ + + @pytest.fixture + def source_sink_data(self) -> Dict[str, Any]: data = { "id": "L1", "name": "discharge_salinity_temperature_sorsin", @@ -237,36 +236,25 @@ def test_default(self): "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], "area": 5, } + return data + + def test_default(self, source_sink_data: Dict[str, Any]): + """ + Test construct the SourceSink class with all the attributes. + """ - source_sink = SourceSink(**data) + source_sink = SourceSink(**source_sink_data) # only the comments key is added by default here - assert source_sink.__dict__.keys() - data.keys() == {"comments"} + assert source_sink.__dict__.keys() - source_sink_data.keys() == {"comments"} - def test_extra_tracer(self): + def test_extra_tracer(self, source_sink_data: Dict[str, Any]): """ Test construct the SourceSink class with all the attributes. """ - data = { - "id": "L1", - "name": "discharge_salinity_temperature_sorsin", - "locationfile": Path("tests/data/input/source-sink/leftsor.pliz"), - "numcoordinates": 2, - "xcoordinates": [63.350456, 45.200344], - "ycoordinates": [12.950216, 6.350155], - "zsource": -3.0, - "zsink": -4.2, - "interpolationmethod": "", - "operand": "O", - "discharge": 1.1234, - "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], - "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], - "area": 5, - "initialtracer_any_name": [1, 2, 3], - } - - source_sink = SourceSink(**data) + source_sink_data["initialtracer_any_name"] = [1, 2, 3] + source_sink = SourceSink(**source_sink_data) # only the comments key is added by default here - assert source_sink.__dict__.keys() - data.keys() == {"comments"} + assert source_sink.__dict__.keys() - source_sink_data.keys() == {"comments"} assert source_sink.initialtracer_any_name == [1, 2, 3] From 11d654c07ba045500ac2a4a86a4b2960a370865c Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Wed, 18 Dec 2024 21:46:43 +0100 Subject: [PATCH 135/193] change the type of discharge in the `SourceSink` class to float or list[float] --- hydrolib/core/dflowfm/ext/models.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 7e3033c08..f2202d2b1 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -209,9 +209,7 @@ class SourceSink(INIBasedModel): zsource: Optional[Union[float, float]] = Field(alias="zSource") zsink: Optional[Union[float, List[float]]] = Field(alias="zSink") - - discharge: ForcingData = Field(alias="discharge") - + discharge: Optional[Union[float, List[float]]] = Field(alias="discharge") area: Optional[float] = Field(alias="Area") salinitydelta: Optional[Union[List[float], float]] = Field(alias="SalinityDelta") From 6be8c445741140e3b913c302d8b78594d5dd1c7f Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 19 Dec 2024 15:00:03 +0100 Subject: [PATCH 136/193] add `SourceSinkConverter` and tests --- hydrolib/tools/ext_old_to_new/converters.py | 134 +++++++++++++++++++- tests/tools/test_converters.py | 42 ++++++ 2 files changed, 174 insertions(+), 2 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 9b713d0f5..f255a9b74 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,9 +1,9 @@ from abc import ABC, abstractmethod -from typing import Any +from typing import Any, Dict, List from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel -from hydrolib.core.dflowfm.ext.models import Boundary, Meteo +from hydrolib.core.dflowfm.ext.models import Boundary, Meteo, SourceSink from hydrolib.core.dflowfm.extold.models import ( ExtOldBoundaryQuantity, ExtOldForcing, @@ -12,6 +12,9 @@ ExtOldParametersQuantity, ) from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField +from hydrolib.core.dflowfm.polyfile.models import PolyFile +from hydrolib.core.dflowfm.tim.models import TimModel +from hydrolib.core.dflowfm.tim.parser import TimParser from hydrolib.tools.ext_old_to_new.utils import ( convert_initial_cond_param_dict, convert_interpolation_data, @@ -226,6 +229,133 @@ def convert(self, forcing: ExtOldForcing) -> ParameterField: return new_block +def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: + """Extract time series data from a TIM model. + + Extract the time series data (each column) from the TimModel object + + Args: + tim_model (TimModel): The TimModel object containing the time series data. + + Returns: + Dict[str, List[float]]: A dictionary containing the time series data form each column. + the keys of the dictionary will be index starting from 1 to the number of columns in the tim file + (excluding the first column(time)). + + Examples: + >>> tim_file = Path("tests/data/external_forcings/initial_waterlevel.tim") + >>> time_file = TimParser.parse(tim_file) + >>> tim_model = TimModel(**time_file) + >>> time_series = get_time_series_data(tim_model) + >>> print(time_series) + { + 1: [1.0, 1.0, 3.0, 5.0, 8.0], + 2: [2.0, 2.0, 5.0, 8.0, 10.0], + 3: [3.0, 5.0, 12.0, 9.0, 23.0], + 4: [4.0, 4.0, 4.0, 4.0, 4.0] + } + """ + num_locations = len(tim_model.timeseries[0].data) + + # Initialize a dictionary to collect data for each location + data = {loc: [] for loc in range(1, num_locations + 1)} + + # Extract time series data for each location + for record in tim_model.timeseries: + for loc_index, value in enumerate(record.data, start=1): + data[loc_index].append(value) + + return data + + +class SourceSinkConverter(BaseConverter): + + def __init__(self): + super().__init__() + + def convert( + self, forcing: ExtOldForcing, ext_file_quantity_list: List[str] = None + ) -> ParameterField: + """Convert an old external forcing block with Sources and sinks to a boundary + forcing block suitable for inclusion in a new external forcings file. + + This function takes a forcing block from an old external forcings + file, represented by an instance of ExtOldForcing, and converts it + into a Meteo object. The Boundary object is suitable for use in new + external forcings files, adhering to the updated format and + specifications. + + Args: + forcing (ExtOldForcing): The contents of a single forcing block + in an old external forcings file. This object contains all the + necessary information, such as quantity, values, and timestamps, + required for the conversion process. + ext_file_quantity_list (List[str], default is None): A list of other quantities that are present in the + external forcings file . + + Returns: + Boundary: A Boindary object that represents the converted forcing + block, ready to be included in a new external forcings file. The + Boundary object conforms to the new format specifications, ensuring + compatibility with updated systems and models. + + Raises: + ValueError: If the forcing block contains a quantity that is not + supported by the converter, a ValueError is raised. This ensures + that only compatible forcing blocks are processed, maintaining + data integrity and preventing errors in the conversion process. + + References: + - `Sources and Sinks `_ + - `Polyline ` + - `TIM file format `_ + - `Sources and Sinks `_ + - `Source and sink definitions `_ + + """ + location_file = forcing.filename.filepath + + # move this to a validator in the source and sink model + polyline = PolyFile(location_file) + x_coords = [point.x for point in polyline.objects[0].points] + y_coords = [point.y for point in polyline.objects[0].points] + z_coords = [point.z for point in polyline.objects[0].points] + + # check the tim file + tim_file = forcing.filename.filepath.with_suffix(".tim") + if not tim_file.exists(): + raise ValueError( + f"TIM file '{tim_file}' not found for QUANTITY={forcing.quantity}" + ) + time_file = TimParser.parse(tim_file) + tim_model = TimModel(**time_file) + time_series = get_time_series_data(tim_model) + ext_file_quantity_list = ["discharge"] + ext_file_quantity_list + time_series = { + ext_file_quantity_list[i]: time_series[i + 1] + for i in range(len(ext_file_quantity_list)) + } + + data = { + "id": "L1", + "name": forcing.quantity, + "locationfile": location_file, + "numcoordinates": len(x_coords), + "xcoordinates": x_coords, + "ycoordinates": y_coords, + "zsource": z_coords[-1], + "zsink": z_coords[0], + } + data = data | time_series + + data = convert_interpolation_data(forcing, data) + data["operand"] = forcing.operand + + new_block = SourceSink(**data) + + return new_block + + class ConverterFactory: """ A factory class for creating converters based on the given quantity. diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 0f5ace5d7..5bfc99383 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -10,6 +10,7 @@ InitialConditionConverter, MeteoConverter, ParametersConverter, + SourceSinkConverter, ) @@ -109,3 +110,44 @@ def test_default(self): assert new_quantity_block.nodeid is None assert new_quantity_block.bndwidth1d is None assert new_quantity_block.bndbldepth is None + + +class TestSourceSinkConverter: + + def test_default(self): + """ + Old quantity block: + + ``` + QUANTITY =waterlevelbnd + FILENAME =tfl_01.pli + FILETYPE =9 + METHOD =3 + OPERAND =O + ``` + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor.pliz", + filetype=9, # "Polyline" + method="1", # "Interpolate space", + operand="O", + area=1.0, + ) + + # the list of quantites names comes from the external forcing file + ext_file_other_quantities = [ + "temperaturedelta", + "salinitydelta", + "initialtracer_anyname", + ] + + new_quantity_block = SourceSinkConverter().convert( + forcing, ext_file_other_quantities + ) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == -4.2 + assert new_quantity_block.zsource == -3 From 304cd393d7ac362d3bead28d400db903e869d9ff Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 19 Dec 2024 15:01:50 +0100 Subject: [PATCH 137/193] test discharge constant value in the `SourceSink` --- tests/dflowfm/ext/test_ext.py | 44 +++++++++++++++++++++++++++++++++-- 1 file changed, 42 insertions(+), 2 deletions(-) diff --git a/tests/dflowfm/ext/test_ext.py b/tests/dflowfm/ext/test_ext.py index 8c4f910c3..3d08cfb19 100644 --- a/tests/dflowfm/ext/test_ext.py +++ b/tests/dflowfm/ext/test_ext.py @@ -231,7 +231,7 @@ def source_sink_data(self) -> Dict[str, Any]: "zsink": -4.2, "interpolationmethod": "", "operand": "O", - "discharge": 1.1234, # [1.0, 1.0, 3.0, 5.0, 8.0], + "discharge": 1.1234, "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], "area": 5, @@ -250,11 +250,51 @@ def test_default(self, source_sink_data: Dict[str, Any]): def test_extra_tracer(self, source_sink_data: Dict[str, Any]): """ - Test construct the SourceSink class with all the attributes. + Test construct the SourceSink class with an extra initialtracer-*** dynamically assigned field. + """ + source_sink_data["initialtracer_any_name"] = [1, 2, 3] + source_sink = SourceSink(**source_sink_data) + + # only the comments key is added by default here + assert source_sink.__dict__.keys() - source_sink_data.keys() == {"comments"} + assert source_sink.initialtracer_any_name == [1, 2, 3] + + def test_multiple_dynamic_fields(self, source_sink_data: Dict[str, Any]): + """ + Test construct the SourceSink class with an extra initialtracer-*** dynamically assigned field. """ source_sink_data["initialtracer_any_name"] = [1, 2, 3] + source_sink_data["tracerbndanyname"] = [1, 2, 3] + source_sink_data["sedfracbnd_any_name"] = [1, 2, 3] source_sink = SourceSink(**source_sink_data) # only the comments key is added by default here assert source_sink.__dict__.keys() - source_sink_data.keys() == {"comments"} assert source_sink.initialtracer_any_name == [1, 2, 3] + assert source_sink.tracerbndanyname == [1, 2, 3] + assert source_sink.sedfracbnd_any_name == [1, 2, 3] + + def test_time_series_discharge_case(self): + """ + + Returns: + + """ + data = { + "id": "L1", + "name": "discharge_salinity_temperature_sorsin", + "locationfile": "tests/data/input/source-sink/leftsor.pliz", + "numcoordinates": 2, + "xcoordinates": [63.350456, 45.200344], + "ycoordinates": [12.950216, 6.350155], + "zsource": -3.0, + "zsink": -4.2, + "discharge": [1.0, 2.0, 3.0, 5.0, 8.0], + "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], + "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], + "interpolationmethod": "linearSpaceTime", + "operand": "O", + } + + source_sink = SourceSink(**data) + print(source_sink) From 33a467eb84381ba0ce274ec096b4937d38a5608e Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 19 Dec 2024 15:47:57 +0100 Subject: [PATCH 138/193] add utility function for locate the temperature and salinity in the quantities list --- hydrolib/tools/ext_old_to_new/utils.py | 43 +++++++++++++++++++++++++- tests/tools/test_tools_utils.py | 18 +++++++++++ 2 files changed, 60 insertions(+), 1 deletion(-) diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index aae3ca09e..e24a938e8 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -1,5 +1,6 @@ +from collections import OrderedDict from pathlib import Path -from typing import Any, Dict, Type, Union +from typing import Any, Dict, List, Type, Union from hydrolib.core.basemodel import DiskOnlyFileModel, FileModel, PathOrStr from hydrolib.core.dflowfm.ext.models import ( @@ -218,3 +219,43 @@ def convert_initial_cond_param_dict(forcing: ExtOldForcing) -> Dict[str, str]: ) return block_data + + +def find_temperature_salinity_in_quantities(strings: List[str]) -> Dict[str, int]: + """ + Searches for keywords "temperature" and "salinity" in a list of strings + and returns a dictionary with associated values. + + Args: + strings (List[str]): A list of strings to search. + + Returns: + Dict[str, int]: A dictionary with keys as "temperature" or "salinity" + and values 3 and 4 respectively. + + Examples: + >>> find_temperature_salinity_in_quantities(["temperature", "Salinity"]) + OrderedDict({"temperature": 3, "salinity": 4}) + + >>> find_temperature_salinity_in_quantities(["Temperature"]) + OrderedDict({"temperature": 3}) + + >>> find_temperature_salinity_in_quantities(["Salinity"]) + OrderedDict({"salinity": 3}) + + >>> find_temperature_salinity_in_quantities(["tracers"]) + OrderedDict() + + >>> find_temperature_salinity_in_quantities([]) + OrderedDict() + """ + result = OrderedDict() + + if any("temperature" in string.lower() for string in strings): + result["temperature"] = 3 + if any("salinity" in string.lower() for string in strings): + result["salinity"] = ( + result.get("temperature", 2) + 1 + ) # Default temperature value is 2 + + return result diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py index a4ba4948f..e6cf6d4a6 100644 --- a/tests/tools/test_tools_utils.py +++ b/tests/tools/test_tools_utils.py @@ -1,3 +1,4 @@ +import unittest from pathlib import Path import pytest @@ -9,6 +10,7 @@ from hydrolib.tools.ext_old_to_new.utils import ( construct_filemodel_new_or_existing, convert_interpolation_data, + find_temperature_salinity_in_quantities, ) @@ -35,3 +37,19 @@ def test_convert_interpolation_data(): assert data["averagingtype"] == "mean" assert data["averagingrelsize"] is None assert data["averagingpercentile"] is None + + +@pytest.mark.parametrize( + "strings, expected", + [ + (["temperature", "Salinity"], {"temperature": 3, "salinity": 4}), + (["Temperature"], {"temperature": 3}), + (["Salinity"], {"salinity": 3}), + (["tracers"], {}), + (["TEMPERATURE", "salInity"], {"temperature": 3, "salinity": 4}), + ([], {}), + (["No relevant data here.", "Nothing to match."], {}), + ], +) +def test_find_keywords_with_values(strings, expected): + assert find_temperature_salinity_in_quantities(strings) == expected From cf3a3a428410c9ca860a1d82511ae13bd8071320 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 13:47:47 +0100 Subject: [PATCH 139/193] add missing test files for the `test_converters.py::TestSourceSinkConverter.test_default` --- tests/data/input/source-sink/leftsor.pliz | 4 ++++ tests/data/input/source-sink/leftsor.tim | 5 +++++ 2 files changed, 9 insertions(+) create mode 100644 tests/data/input/source-sink/leftsor.pliz create mode 100644 tests/data/input/source-sink/leftsor.tim diff --git a/tests/data/input/source-sink/leftsor.pliz b/tests/data/input/source-sink/leftsor.pliz new file mode 100644 index 000000000..6229db067 --- /dev/null +++ b/tests/data/input/source-sink/leftsor.pliz @@ -0,0 +1,4 @@ +L1 + 2 3 + 63.350456 12.950216 -4.200000 + 45.200344 6.350155 -3.000 diff --git a/tests/data/input/source-sink/leftsor.tim b/tests/data/input/source-sink/leftsor.tim new file mode 100644 index 000000000..2aa930589 --- /dev/null +++ b/tests/data/input/source-sink/leftsor.tim @@ -0,0 +1,5 @@ +0.0 1.0 2.0 3.0 4.0 +1000000000 1.0 2.0 3.0 4.0 +2000000000 1.0 2.0 3.0 4.0 +3000000000 1.0 2.0 3.0 4.0 +4000000000 1.0 2.0 3.0 4.0 From 4cdcdd4ae7b3fadefd813b78675ead83f86a4f90 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 14:19:47 +0100 Subject: [PATCH 140/193] the `find_temperature_salinity_in_quantities` no returns a dictionary with `temperaturedelta` and `salinitydelta` not temperature and salinity --- hydrolib/tools/ext_old_to_new/utils.py | 12 ++++++------ tests/tools/test_tools_utils.py | 8 ++++---- 2 files changed, 10 insertions(+), 10 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index e24a938e8..a3ff38325 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -235,13 +235,13 @@ def find_temperature_salinity_in_quantities(strings: List[str]) -> Dict[str, int Examples: >>> find_temperature_salinity_in_quantities(["temperature", "Salinity"]) - OrderedDict({"temperature": 3, "salinity": 4}) + OrderedDict({"temperaturedelta": 3, "salinitydelta": 4}) >>> find_temperature_salinity_in_quantities(["Temperature"]) - OrderedDict({"temperature": 3}) + OrderedDict({"temperaturedelta": 3}) >>> find_temperature_salinity_in_quantities(["Salinity"]) - OrderedDict({"salinity": 3}) + OrderedDict({"salinitydelta": 3}) >>> find_temperature_salinity_in_quantities(["tracers"]) OrderedDict() @@ -252,10 +252,10 @@ def find_temperature_salinity_in_quantities(strings: List[str]) -> Dict[str, int result = OrderedDict() if any("temperature" in string.lower() for string in strings): - result["temperature"] = 3 + result["temperaturedelta"] = 3 if any("salinity" in string.lower() for string in strings): - result["salinity"] = ( - result.get("temperature", 2) + 1 + result["salinitydelta"] = ( + result.get("temperaturedelta", 2) + 1 ) # Default temperature value is 2 return result diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py index e6cf6d4a6..8a23ccbd2 100644 --- a/tests/tools/test_tools_utils.py +++ b/tests/tools/test_tools_utils.py @@ -42,11 +42,11 @@ def test_convert_interpolation_data(): @pytest.mark.parametrize( "strings, expected", [ - (["temperature", "Salinity"], {"temperature": 3, "salinity": 4}), - (["Temperature"], {"temperature": 3}), - (["Salinity"], {"salinity": 3}), + (["temperature", "Salinity"], {"temperaturedelta": 3, "salinitydelta": 4}), + (["Temperature"], {"temperaturedelta": 3}), + (["Salinity"], {"salinitydelta": 3}), (["tracers"], {}), - (["TEMPERATURE", "salInity"], {"temperature": 3, "salinity": 4}), + (["TEMPERATURE", "salInity"], {"temperaturedelta": 3, "salinitydelta": 4}), ([], {}), (["No relevant data here.", "Nothing to match."], {}), ], From 33e6cd252a5f28b4156dfdd48b317b4e7773cb76 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 14:37:31 +0100 Subject: [PATCH 141/193] add default test case for the SourceSinkConverter --- hydrolib/tools/ext_old_to_new/converters.py | 28 ++++++++- tests/data/input/source-sink/leftsor.tim | 8 +-- tests/tools/test_converters.py | 67 +++++++++++++++++---- 3 files changed, 85 insertions(+), 18 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index f255a9b74..ce4c01fbd 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -3,7 +3,12 @@ from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel -from hydrolib.core.dflowfm.ext.models import Boundary, Meteo, SourceSink +from hydrolib.core.dflowfm.ext.models import ( + SOURCE_SINKS_QUANTITIES_VALID_PREFIXES, + Boundary, + Meteo, + SourceSink, +) from hydrolib.core.dflowfm.extold.models import ( ExtOldBoundaryQuantity, ExtOldForcing, @@ -18,6 +23,7 @@ from hydrolib.tools.ext_old_to_new.utils import ( convert_initial_cond_param_dict, convert_interpolation_data, + find_temperature_salinity_in_quantities, oldfiletype_to_forcing_file_type, ) @@ -291,7 +297,7 @@ def convert( necessary information, such as quantity, values, and timestamps, required for the conversion process. ext_file_quantity_list (List[str], default is None): A list of other quantities that are present in the - external forcings file . + external forcings file. Returns: Boundary: A Boindary object that represents the converted forcing @@ -330,7 +336,23 @@ def convert( time_file = TimParser.parse(tim_file) tim_model = TimModel(**time_file) time_series = get_time_series_data(tim_model) - ext_file_quantity_list = ["discharge"] + ext_file_quantity_list + # get the required quantities from the external file + required_quantities_from_ext = [ + key + for key in ext_file_quantity_list + if key.startswith(SOURCE_SINKS_QUANTITIES_VALID_PREFIXES) + ] + # check if the temperature and salinity are present in the external file + temp_salinity_dict = find_temperature_salinity_in_quantities( + ext_file_quantity_list + ) + + ext_file_quantity_list = ( + ["discharge"] + + list(temp_salinity_dict.keys()) + + required_quantities_from_ext + ) + time_series = { ext_file_quantity_list[i]: time_series[i + 1] for i in range(len(ext_file_quantity_list)) diff --git a/tests/data/input/source-sink/leftsor.tim b/tests/data/input/source-sink/leftsor.tim index 2aa930589..95fe41e5b 100644 --- a/tests/data/input/source-sink/leftsor.tim +++ b/tests/data/input/source-sink/leftsor.tim @@ -1,5 +1,5 @@ 0.0 1.0 2.0 3.0 4.0 -1000000000 1.0 2.0 3.0 4.0 -2000000000 1.0 2.0 3.0 4.0 -3000000000 1.0 2.0 3.0 4.0 -4000000000 1.0 2.0 3.0 4.0 +100 1.0 2.0 3.0 4.0 +200 1.0 2.0 3.0 4.0 +300 1.0 2.0 3.0 4.0 +400 1.0 2.0 3.0 4.0 diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 5bfc99383..8b3809258 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -116,29 +116,74 @@ class TestSourceSinkConverter: def test_default(self): """ - Old quantity block: + The test case is based on the following assumptions: + - temperature, salinity, and initialtracer_anyname are other quantities in the ext file. + - The ext file has the following structure: + ``` + QUANTITY=initialtemperature + FILENAME=right.pol + FILETYPE=10 + METHOD=4 + OPERAND=O + VALUE=11. + + QUANTITY=initialsalinity + FILENAME=right.pol + FILETYPE=10 + METHOD=4 + OPERAND=O + VALUE=11. + + QUANTITY=initialtracer_anyname + FILENAME=leftsor.pliz + FILETYPE=9 + METHOD=1 + OPERAND=O + + QUANTITY=discharge_salinity_temperature_sorsin + FILENAME=leftsor.pliz + FILETYPE=9 + METHOD=1 + OPERAND=O + AREA=1.0 + ``` + - The time file has the following structure: ``` - QUANTITY =waterlevelbnd - FILENAME =tfl_01.pli - FILETYPE =9 - METHOD =3 - OPERAND =O + 0.0 1.0 2.0 3.0 4.0 + 100 1.0 2.0 3.0 4.0 + 200 1.0 2.0 3.0 4.0 + 300 1.0 2.0 3.0 4.0 + 400 1.0 2.0 3.0 4.0 ``` + + - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. + ``` + zsink = -4.2 + zsource = -3 + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.350456 12.950216 -4.200000 + 45.200344 6.350155 -3.000 + ``` + """ forcing = ExtOldForcing( quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, filename="tests/data/input/source-sink/leftsor.pliz", - filetype=9, # "Polyline" - method="1", # "Interpolate space", + filetype=9, + method="1", operand="O", area=1.0, ) - # the list of quantites names comes from the external forcing file ext_file_other_quantities = [ - "temperaturedelta", - "salinitydelta", + "salinity", + "temperature", "initialtracer_anyname", ] From 3768ecb761677d4cedf1d7bc7ee43f67123ada8f Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 17:02:32 +0100 Subject: [PATCH 142/193] reformat the polyfile tests --- .../dflowfm/polyfile/test_polyline_models.py | 26 ++++++++++++------- 1 file changed, 17 insertions(+), 9 deletions(-) diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index 5ec7b4cef..203a7b34d 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -1,3 +1,9 @@ +""" +- To read the z values correctly, the dimensions should be 2*3 and the extension should be pliz. +- If the file is .pliz and the dimensions are 2*2, the parser will give an error. +- If the file is .pli and the dimensions are 2*3, the parser will ignore the z values. +""" + from pathlib import Path import pytest @@ -15,7 +21,7 @@ def test_with_label(polylines_dir: Path): 0.00000000000000000 0.00000000000000000 #zee 0.00000000000000000 2.00000000000000000 #zee """ - path = polylines_dir.joinpath("boundary-polyline-no-z-with-label.pli") + path = polylines_dir / "boundary-polyline-no-z-with-label.pli" polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -30,7 +36,7 @@ def test_without_z(polylines_dir: Path): -80 -50 -80 550 """ - path = polylines_dir.joinpath("boundary-polyline-no-z-no-label.pli") + path = polylines_dir / "boundary-polyline-no-z-no-label.pli" polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -40,16 +46,16 @@ def test_without_z(polylines_dir: Path): assert points[1] == Point(x=-80, y=550, z=None, data=[]) -def test_with_z_and_pli_extension(polylines_dir: Path): +def test_with_z_and_pli_extension_2by2(polylines_dir: Path): """ - The test check a 2*2 polyline file with z values but the extension is pli not pliz. + The test check a 2*2 polyline file with z values, but the extension is pli not pliz. the parser will ignore the z values and read the file as a normal polyline file. tfl_01 - 2 2 + 2 2 0.00000000000000000 0.00000000000000000 5 0.00000000000000000 2.00000000000000000 5 """ - path = polylines_dir.joinpath("boundary-polyline-with-z-no-label.pli") + path = polylines_dir / "boundary-polyline-with-z-no-label.pli" polyline = PolyFile(path) assert polyline.has_z_values is False assert polyline.filepath == path @@ -59,16 +65,18 @@ def test_with_z_and_pli_extension(polylines_dir: Path): assert points[1] == Point(x=0, y=2, z=None, data=[]) -def test_with_z_and_pliz_extension(polylines_dir: Path): +def test_with_z_and_pliz_extension_2by2(polylines_dir: Path): """ The test check a 2*2 polyline file with z values, the extension is correct but the dimensions are 2*2. not 2*3 the parser only reads the length of the dimensions in the second line and ignores the z values. tfl_01 - 2 2 + 2 2 0.00000000000000000 0.00000000000000000 5 0.00000000000000000 2.00000000000000000 5 + + - To read the z values correctly, the dimensions should be 2*3 and the extension should be pliz. """ - path = polylines_dir.joinpath("boundary-polyline-with-z-no-label.pliz") + path = polylines_dir / "boundary-polyline-with-z-no-label.pliz" with pytest.raises(ValueError): PolyFile(path) From 3e8ed2697977e7cf3b55b1906e4face67c70e092 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 17:09:24 +0100 Subject: [PATCH 143/193] add testcase for polyfile with 2*3 --- ...oundary-polyline-with-z-no-label-2by3.pliz | 4 ++ .../dflowfm/polyfile/test_polyline_models.py | 51 ++++++++++++++----- 2 files changed, 41 insertions(+), 14 deletions(-) create mode 100644 tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label-2by3.pliz diff --git a/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label-2by3.pliz b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label-2by3.pliz new file mode 100644 index 000000000..ee1c70181 --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/boundary-polyline-with-z-no-label-2by3.pliz @@ -0,0 +1,4 @@ +tfl_01 + 2 3 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index 203a7b34d..e1241910f 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -65,18 +65,41 @@ def test_with_z_and_pli_extension_2by2(polylines_dir: Path): assert points[1] == Point(x=0, y=2, z=None, data=[]) -def test_with_z_and_pliz_extension_2by2(polylines_dir: Path): - """ - The test check a 2*2 polyline file with z values, the extension is correct but the dimensions are 2*2. - not 2*3 - the parser only reads the length of the dimensions in the second line and ignores the z values. - tfl_01 - 2 2 - 0.00000000000000000 0.00000000000000000 5 - 0.00000000000000000 2.00000000000000000 5 +class TestPLIZExtension: - - To read the z values correctly, the dimensions should be 2*3 and the extension should be pliz. - """ - path = polylines_dir / "boundary-polyline-with-z-no-label.pliz" - with pytest.raises(ValueError): - PolyFile(path) + def test_with_z_and_pliz_extension_2by2(self, polylines_dir: Path): + """ + The test check a 2*2 polyline file with z values, the extension is correct, but the dimensions are 2*2. + not 2*3 + the parser only reads the length of the dimensions in the second line and ignores the z values. + ``` + tfl_01 + 2 2 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 + ``` + + - To read the z values correctly, the dimensions should be 2*3, and the extension should be pliz. + """ + path = polylines_dir / "boundary-polyline-with-z-no-label.pliz" + with pytest.raises(ValueError): + PolyFile(path) + + def test_with_z_and_pliz_extension_2by3(self, polylines_dir: Path): + """ + The test check a 2*3, polyline file with z values, the extension is correct, and the dimensions are correct. + the parser only reads the length of the dimensions in the second line and ignores the z values. + ``` + tfl_01 + 2 3 + 0.00000000000000000 0.00000000000000000 5 + 0.00000000000000000 2.00000000000000000 5 + ``` + - To read the z values correctly, the dimensions should be 2*3 and the extension should be pliz. + """ + path = polylines_dir / "boundary-polyline-with-z-no-label-2by3.pliz" + polyfile = PolyFile(path) + points = polyfile.objects[0].points + assert len(polyfile.objects[0].points) == 2 + assert points[0] == Point(x=0, y=0, z=5, data=[]) + assert points[1] == Point(x=0, y=2, z=5, data=[]) From a6a99c9b111fedd4870d1d9975e312ab5ec9cf18 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 17:23:14 +0100 Subject: [PATCH 144/193] add testcase for the polyfile with 2*5 dimensions --- hydrolib/core/dflowfm/polyfile/models.py | 27 +++++++++++++++++-- .../polylines/leftsor-5-columns.pliz | 4 +++ .../dflowfm/polyfile/test_polyline_models.py | 22 +++++++++++++++ 3 files changed, 51 insertions(+), 2 deletions(-) create mode 100644 tests/data/input/dflowfm_individual_files/polylines/leftsor-5-columns.pliz diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index 41a7254ee..c84cfc879 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -80,7 +80,30 @@ class PolyObject(BaseModel): class PolyFile(ParsableFileModel): - """Poly-file (.pol/.pli/.pliz) representation.""" + """ + Poly-file (.pol/.pli/.pliz) representation. + + Notes: + - The `has_z_values` attribute is used to determine if the PolyFile contains z-values. + - The `has_z_values` is false by default and should be set to true if the PolyFile path ends with `.pliz`. + - The `***.pliz` file should have a 2*3 structure, where the third column contains the z-values, otherwise + (the parser will give an error). + - If there is a label in the file, the parser will ignore the label and read the file as a normal polyline file. + ``` + tfl_01 + 2 2 + 0.00 1.00 #zee + 0.00 2.00 #zee + ``` + - if the file is .pliz, and the dimensions are 2*5 the first three columns will be considered as x, y, z values + and the last two columns will be considered as data values. + ``` + L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 + ``` + """ has_z_values: bool = False objects: Sequence[PolyObject] = Field(default_factory=list) @@ -106,7 +129,7 @@ def _get_serializer(cls) -> Callable: @classmethod def _get_parser(cls) -> Callable: - # TODO Prevent circular dependency in Parser + # Prevent circular dependency in Parser from .parser import read_polyfile return read_polyfile diff --git a/tests/data/input/dflowfm_individual_files/polylines/leftsor-5-columns.pliz b/tests/data/input/dflowfm_individual_files/polylines/leftsor-5-columns.pliz new file mode 100644 index 000000000..a3006d269 --- /dev/null +++ b/tests/data/input/dflowfm_individual_files/polylines/leftsor-5-columns.pliz @@ -0,0 +1,4 @@ +L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index e1241910f..4a8bb4d83 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -103,3 +103,25 @@ def test_with_z_and_pliz_extension_2by3(self, polylines_dir: Path): assert len(polyfile.objects[0].points) == 2 assert points[0] == Point(x=0, y=0, z=5, data=[]) assert points[1] == Point(x=0, y=2, z=5, data=[]) + + def test_with_z_and_pliz_extension_2by5(self, polylines_dir: Path): + """ + The test check a 2*5 polyline file with z values in the third and fourth columns, the extension is correct, + but the dimensions are 2*5. + + ``` + L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 + ``` + + - The first three columns are the x, y, and z values. + The rest of the columns are the data values. + """ + path = polylines_dir / "leftsor-5-columns.pliz" + polyfile = PolyFile(path) + points = polyfile.objects[0].points + assert len(polyfile.objects[0].points) == 2 + assert points[0] == Point(x=63.35, y=12.95, z=-4.2, data=[-5.35, 0]) + assert points[1] == Point(x=45.2, y=6.35, z=-3, data=[-2.90, 0]) From c1a70aeef46941948d0976591a3fb92c9c23ae2f Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 18:13:36 +0100 Subject: [PATCH 145/193] add `SourceSinkConverter.get_z_sources_sinks` method and tests --- hydrolib/tools/ext_old_to_new/converters.py | 42 +++++++++++++- tests/tools/test_converters.py | 64 +++++++++++++++++++++ 2 files changed, 105 insertions(+), 1 deletion(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index ce4c01fbd..2e725c248 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,5 +1,5 @@ from abc import ABC, abstractmethod -from typing import Any, Dict, List +from typing import Any, Dict, List, Tuple from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel @@ -279,6 +279,46 @@ class SourceSinkConverter(BaseConverter): def __init__(self): super().__init__() + @staticmethod + def get_z_sources_sinks(polyline: PolyFile) -> Tuple[float, List[float]]: + """ + Get the z values of the source and sink points from the polyline file. + + Args: + polyline: The polyline object containing the source and sink points. + + Returns: + z_source, z_sinkA: Tuple[float, List[float]]: + If the polyline has data (more than 3 columns), then both the z_source and z_sink will be a list of two values. + Otherwise, the z_source and the z_sink will be a single value each. + + Examples: + in case the polyline has 3 columns: + >>> polyline = PolyFile("tests/data/input/source-sink/leftsor.pliz") + >>> z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyline) + >>> print(z_source, z_sink) + [-3] [-4.2] + + in case the polyline has more than 3 columns: + >>> polyline = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") #Doctest: +SKIP + >>> z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyline) + >>> print(z_source, z_sink) + [-3, -2.9] [-4.2, -5.35] + """ + has_data = True if polyline.objects[0].points[0].data else False + + z_source_sink = [] + for elem in [0, -1]: + point = polyline.objects[0].points[elem] + if has_data: + z_source_sink.append([point.z, point.data[0]]) + else: + z_source_sink.append([point.z]) + + z_sink = z_source_sink[0] + z_source = z_source_sink[1] + return z_source, z_sink + def convert( self, forcing: ExtOldForcing, ext_file_quantity_list: List[str] = None ) -> ParameterField: diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index 8b3809258..f95a63a84 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,3 +1,6 @@ +from pathlib import Path +from unittest.mock import patch + import numpy as np from hydrolib.core.basemodel import DiskOnlyFileModel @@ -5,6 +8,7 @@ from hydrolib.core.dflowfm.ext.models import Boundary, Meteo from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField +from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.tools.ext_old_to_new.converters import ( BoundaryConditionConverter, InitialConditionConverter, @@ -114,6 +118,66 @@ def test_default(self): class TestSourceSinkConverter: + def test_get_z_sources_sinks_single_value(self): + """ + The test case is based on the following assumptions: + - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. + ``` + zsink = -4.2 + zsource = -3 + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 + 45.20 6.35 -3.00 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor.pliz") + + z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) + assert z_source == [-3] + assert z_sink == [-4.2] + + def test_get_z_sources_sinks_multiple_values(self): + """ + The test case is based on the following assumptions: + - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the + third and forth columns' values, and if there is a fifth column it will be ignored. + ``` + zsink = [-4.2, -5.35] + zsource = [-3, -2.90] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 + ... + + ... + 45.20 6.35 -3.00 -2.90 + ``` + when there is a fifth column: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 0 + ... + + ... + 45.20 6.35 -3.00 -2.90 0 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") + + z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) + assert z_source == [-3, -2.90] + assert z_sink == [-4.2, -5.35] + def test_default(self): """ The test case is based on the following assumptions: From b50b8232ae8e3187e45888007a22ebaf61241940 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 18:17:25 +0100 Subject: [PATCH 146/193] add `initialsedfrac` quantity name to the `SourcesSink` model --- hydrolib/core/dflowfm/ext/models.py | 1 + 1 file changed, 1 insertion(+) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index f2202d2b1..c6cfc52ce 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -28,6 +28,7 @@ "initialtracer", "tracerbnd", "sedfracbnd", + "initialsedfrac", ) From 3e477e1d16395d3b7d0d529744a2f5e25ec2854c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 18:28:59 +0100 Subject: [PATCH 147/193] test `SourceSinkConverter` with a 5 column polyline file --- hydrolib/core/dflowfm/ext/models.py | 2 +- hydrolib/tools/ext_old_to_new/converters.py | 82 ++++++++++----------- tests/tools/test_converters.py | 63 +++++++++++++++- 3 files changed, 103 insertions(+), 44 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index c6cfc52ce..96e082822 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -208,7 +208,7 @@ class SourceSink(INIBasedModel): xcoordinates: Optional[List[float]] = Field(alias="xCoordinates") ycoordinates: Optional[List[float]] = Field(alias="yCoordinates") - zsource: Optional[Union[float, float]] = Field(alias="zSource") + zsource: Optional[Union[float, List[float]]] = Field(alias="zSource") zsink: Optional[Union[float, List[float]]] = Field(alias="zSink") discharge: Optional[Union[float, List[float]]] = Field(alias="discharge") area: Optional[float] = Field(alias="Area") diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 2e725c248..b11f764fa 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -235,49 +235,49 @@ def convert(self, forcing: ExtOldForcing) -> ParameterField: return new_block -def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: - """Extract time series data from a TIM model. - - Extract the time series data (each column) from the TimModel object - - Args: - tim_model (TimModel): The TimModel object containing the time series data. - - Returns: - Dict[str, List[float]]: A dictionary containing the time series data form each column. - the keys of the dictionary will be index starting from 1 to the number of columns in the tim file - (excluding the first column(time)). - - Examples: - >>> tim_file = Path("tests/data/external_forcings/initial_waterlevel.tim") - >>> time_file = TimParser.parse(tim_file) - >>> tim_model = TimModel(**time_file) - >>> time_series = get_time_series_data(tim_model) - >>> print(time_series) - { - 1: [1.0, 1.0, 3.0, 5.0, 8.0], - 2: [2.0, 2.0, 5.0, 8.0, 10.0], - 3: [3.0, 5.0, 12.0, 9.0, 23.0], - 4: [4.0, 4.0, 4.0, 4.0, 4.0] - } - """ - num_locations = len(tim_model.timeseries[0].data) +class SourceSinkConverter(BaseConverter): - # Initialize a dictionary to collect data for each location - data = {loc: [] for loc in range(1, num_locations + 1)} + def __init__(self): + super().__init__() - # Extract time series data for each location - for record in tim_model.timeseries: - for loc_index, value in enumerate(record.data, start=1): - data[loc_index].append(value) + @staticmethod + def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: + """Extract time series data from a TIM model. - return data + Extract the time series data (each column) from the TimModel object + Args: + tim_model (TimModel): The TimModel object containing the time series data. -class SourceSinkConverter(BaseConverter): + Returns: + Dict[str, List[float]]: A dictionary containing the time series data form each column. + the keys of the dictionary will be index starting from 1 to the number of columns in the tim file + (excluding the first column(time)). - def __init__(self): - super().__init__() + Examples: + >>> tim_file = Path("tests/data/external_forcings/initial_waterlevel.tim") + >>> time_file = TimParser.parse(tim_file) + >>> tim_model = TimModel(**time_file) + >>> time_series = SourceSinkConverter().get_time_series_data(tim_model) + >>> print(time_series) + { + 1: [1.0, 1.0, 3.0, 5.0, 8.0], + 2: [2.0, 2.0, 5.0, 8.0, 10.0], + 3: [3.0, 5.0, 12.0, 9.0, 23.0], + 4: [4.0, 4.0, 4.0, 4.0, 4.0] + } + """ + num_locations = len(tim_model.timeseries[0].data) + + # Initialize a dictionary to collect data for each location + data = {loc: [] for loc in range(1, num_locations + 1)} + + # Extract time series data for each location + for record in tim_model.timeseries: + for loc_index, value in enumerate(record.data, start=1): + data[loc_index].append(value) + + return data @staticmethod def get_z_sources_sinks(polyline: PolyFile) -> Tuple[float, List[float]]: @@ -365,7 +365,7 @@ def convert( polyline = PolyFile(location_file) x_coords = [point.x for point in polyline.objects[0].points] y_coords = [point.y for point in polyline.objects[0].points] - z_coords = [point.z for point in polyline.objects[0].points] + z_source, z_sink = self.get_z_sources_sinks(polyline) # check the tim file tim_file = forcing.filename.filepath.with_suffix(".tim") @@ -375,7 +375,7 @@ def convert( ) time_file = TimParser.parse(tim_file) tim_model = TimModel(**time_file) - time_series = get_time_series_data(tim_model) + time_series = self.get_time_series_data(tim_model) # get the required quantities from the external file required_quantities_from_ext = [ key @@ -405,8 +405,8 @@ def convert( "numcoordinates": len(x_coords), "xcoordinates": x_coords, "ycoordinates": y_coords, - "zsource": z_coords[-1], - "zsink": z_coords[0], + "zsource": z_source, + "zsink": z_sink, } data = data | time_series diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index f95a63a84..ec24e9c35 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -258,5 +258,64 @@ def test_default(self): assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] - assert new_quantity_block.zsink == -4.2 - assert new_quantity_block.zsource == -3 + assert new_quantity_block.zsink == [-4.2] + assert new_quantity_block.zsource == [-3] + + def test_4_5_columns_polyline(self): + """ + The test case is based on the assumptions of the default test plus the following changes: + + - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the + third and forth columns' values, and if there is a fifth column it will be ignored. + ``` + zsink = [-4.2, -5.35] + zsource = [-3, -2.90] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 + ... + + ... + 45.20 6.35 -3.00 -2.90 + ``` + when there is a fifth column: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 0 + ... + + ... + 45.20 6.35 -3.00 -2.90 0 + ``` + + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor-5-columns.pliz", + filetype=9, + method="1", + operand="O", + area=1.0, + ) + + ext_file_other_quantities = [ + "salinity", + "temperature", + "initialtracer_anyname", + ] + tim_file = Path("tests/data/input/source-sink/leftsor.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + new_quantity_block = SourceSinkConverter().convert( + forcing, ext_file_other_quantities + ) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == [-4.2, -5.35] + assert new_quantity_block.zsource == [-3, -2.90] From 4f8aeb554ce2146ad0399e6cfa1a63121d428efa Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 19:11:45 +0100 Subject: [PATCH 148/193] test `SourceSinkConverter.parse_tim_model` with quantities_list and tim file mismatch --- hydrolib/tools/ext_old_to_new/converters.py | 111 ++++++++++++++++---- tests/tools/test_converters.py | 14 +++ 2 files changed, 102 insertions(+), 23 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index b11f764fa..96043365f 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,4 +1,5 @@ from abc import ABC, abstractmethod +from pathlib import Path from typing import Any, Dict, List, Tuple from hydrolib.core.basemodel import DiskOnlyFileModel @@ -319,6 +320,92 @@ def get_z_sources_sinks(polyline: PolyFile) -> Tuple[float, List[float]]: z_source = z_source_sink[1] return z_source, z_sink + def parse_tim_model( + self, tim_file: Path, ext_file_quantity_list: List[str] + ) -> Dict[str, List[float]]: + """Parse the source and sinks related time series from the tim file. + + - Parse the TIM file and extract the time series data for each column. + - assign the time series data to the corresponding quantity name. + + Args: + tim_file (Path): The path to the TIM file. + ext_file_quantity_list (List[str]): A list of other quantities that are present in the external forcings file. + + Returns: + Dict[str, List[float]]: A dictionary containing the time series data form each column in the tim_file. + the keys of the dictionary will be the quantity names, and the values will be the time series data. + + Raises: + ValueError: If the number of columns in the TIM file does not match the number of quantities in the external + forcings file that has one of the following prefixes `initialtracer`,`tracerbnd`, + `sedfracbnd`,`initialsedfrac`, plus the discharge, temperature, and salinity. + + Examples: + if the tim file contains 5 columns (the first column is the time): + ``` + 0.0 1.0 2.0 3.0 4.0 + 1.0 1.0 2.0 3.0 4.0 + 2.0 1.0 2.0 3.0 4.0 + 3.0 1.0 2.0 3.0 4.0 + 4.0 1.0 2.0 3.0 4.0 + ``` + and the external file contains the following quantities: + >>> ext_file_quantity_list = ["discharge", "temperature", "salinity", "initialtracer-anyname", + ... "anyother-quantities"] + + - the function will filter the quantities that have one of the following prefixes `initialtracer`,`tracerbnd`, + `sedfracbnd`,`initialsedfrac`, plus the discharge, temperature, and salinity. + and then compare the number of columns in the TIM file with the number of filtered quantities from the + external forcings file, if they don't match a `Value Error` will be raised. + - Here the filtered quantities are ["discharge", "temperature", "salinity", "initialtracer-anyname"] and the + tim file contains 4 columns (excluding the time column). + + >>> tim_file = Path("tests/data/input/source-sink/leftsor.tim") + + >>> converter = SourceSinkConverter() + >>> time_series = converter.parse_tim_model(tim_file, ext_file_quantity_list) + >>> print(time_series) + { + "discharge": [1.0, 1.0, 1.0, 1.0, 1.0], + "temperaturedelta": [2.0, 2.0, 2.0, 2.0, 2.0], + "salinitydelta": [3.0, 3.0, 3.0, 3.0, 3.0], + "initialtracer-anyname": [4.0, 4.0, 4.0, 4.0, 4.0], + } + """ + time_file = TimParser.parse(tim_file) + tim_model = TimModel(**time_file) + time_series = self.get_time_series_data(tim_model) + # get the required quantities from the external file + required_quantities_from_ext = [ + key + for key in ext_file_quantity_list + if key.startswith(SOURCE_SINKS_QUANTITIES_VALID_PREFIXES) + ] + + # check if the temperature and salinity are present in the external file + temp_salinity_dict = find_temperature_salinity_in_quantities( + ext_file_quantity_list + ) + + ext_file_quantity_list = ( + ["discharge"] + + list(temp_salinity_dict.keys()) + + required_quantities_from_ext + ) + + if len(time_series) != len(ext_file_quantity_list): + raise ValueError( + f"Number of columns in the TIM file '{tim_file}: {len(time_series)}' does not match the number of " + f"quantities in the external forcings file: {ext_file_quantity_list}." + ) + + time_series = { + ext_file_quantity_list[i]: time_series[i + 1] + for i in range(len(ext_file_quantity_list)) + } + return time_series + def convert( self, forcing: ExtOldForcing, ext_file_quantity_list: List[str] = None ) -> ParameterField: @@ -373,30 +460,8 @@ def convert( raise ValueError( f"TIM file '{tim_file}' not found for QUANTITY={forcing.quantity}" ) - time_file = TimParser.parse(tim_file) - tim_model = TimModel(**time_file) - time_series = self.get_time_series_data(tim_model) - # get the required quantities from the external file - required_quantities_from_ext = [ - key - for key in ext_file_quantity_list - if key.startswith(SOURCE_SINKS_QUANTITIES_VALID_PREFIXES) - ] - # check if the temperature and salinity are present in the external file - temp_salinity_dict = find_temperature_salinity_in_quantities( - ext_file_quantity_list - ) - - ext_file_quantity_list = ( - ["discharge"] - + list(temp_salinity_dict.keys()) - + required_quantities_from_ext - ) - time_series = { - ext_file_quantity_list[i]: time_series[i + 1] - for i in range(len(ext_file_quantity_list)) - } + time_series = self.parse_tim_model(tim_file, ext_file_quantity_list) data = { "id": "L1", diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index ec24e9c35..ce3c661f7 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -2,6 +2,7 @@ from unittest.mock import patch import numpy as np +import pytest from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel @@ -116,6 +117,19 @@ def test_default(self): assert new_quantity_block.bndbldepth is None +class TestParseTimFileForSourceSink: + def test_list_of_ext_quantities_tim_column_mismatch(self): + """ + The test case is based on the following assumptions: + - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 3 quantities. + """ + tim_file = Path("tests/data/input/source-sink/leftsor.tim") + ext_file_quantity_list = ["discharge", "temperature", "salinity"] + converter = SourceSinkConverter() + with pytest.raises(ValueError): + converter.parse_tim_model(tim_file, ext_file_quantity_list) + + class TestSourceSinkConverter: def test_get_z_sources_sinks_single_value(self): From 59344859d1074921b7115dd5191ee05635974672 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 19:19:56 +0100 Subject: [PATCH 149/193] test `SourceSinkConverter.parse_tim_model` with default case --- tests/tools/test_converters.py | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index ce3c661f7..fd1ce4fbf 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -118,6 +118,26 @@ def test_default(self): class TestParseTimFileForSourceSink: + def test_default(self): + """ + The test case is based on the following assumptions: + - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 4 quantities. + """ + tim_file = Path("tests/data/input/source-sink/leftsor.tim") + ext_file_quantity_list = [ + "discharge", + "temperature", + "salinity", + "initialtracer_anyname", + ] + converter = SourceSinkConverter() + + time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) + assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] + assert time_series_data["temperaturedelta"] == [2.0, 2.0, 2.0, 2.0, 2.0] + assert time_series_data["salinitydelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] + assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] + def test_list_of_ext_quantities_tim_column_mismatch(self): """ The test case is based on the following assumptions: From 8847cc04244c117324330ae10ce46c24ff7c0e9c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 19:25:32 +0100 Subject: [PATCH 150/193] move the `SourceSinkConverter` tests to a separate test file --- tests/tools/test_converters.py | 244 -------------------- tests/tools/test_converters_source_sink.py | 246 +++++++++++++++++++++ 2 files changed, 246 insertions(+), 244 deletions(-) create mode 100644 tests/tools/test_converters_source_sink.py diff --git a/tests/tools/test_converters.py b/tests/tools/test_converters.py index fd1ce4fbf..0f5ace5d7 100644 --- a/tests/tools/test_converters.py +++ b/tests/tools/test_converters.py @@ -1,21 +1,15 @@ -from pathlib import Path -from unittest.mock import patch - import numpy as np -import pytest from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel from hydrolib.core.dflowfm.ext.models import Boundary, Meteo from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField -from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.tools.ext_old_to_new.converters import ( BoundaryConditionConverter, InitialConditionConverter, MeteoConverter, ParametersConverter, - SourceSinkConverter, ) @@ -115,241 +109,3 @@ def test_default(self): assert new_quantity_block.nodeid is None assert new_quantity_block.bndwidth1d is None assert new_quantity_block.bndbldepth is None - - -class TestParseTimFileForSourceSink: - def test_default(self): - """ - The test case is based on the following assumptions: - - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 4 quantities. - """ - tim_file = Path("tests/data/input/source-sink/leftsor.tim") - ext_file_quantity_list = [ - "discharge", - "temperature", - "salinity", - "initialtracer_anyname", - ] - converter = SourceSinkConverter() - - time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) - assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] - assert time_series_data["temperaturedelta"] == [2.0, 2.0, 2.0, 2.0, 2.0] - assert time_series_data["salinitydelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] - assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] - - def test_list_of_ext_quantities_tim_column_mismatch(self): - """ - The test case is based on the following assumptions: - - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 3 quantities. - """ - tim_file = Path("tests/data/input/source-sink/leftsor.tim") - ext_file_quantity_list = ["discharge", "temperature", "salinity"] - converter = SourceSinkConverter() - with pytest.raises(ValueError): - converter.parse_tim_model(tim_file, ext_file_quantity_list) - - -class TestSourceSinkConverter: - - def test_get_z_sources_sinks_single_value(self): - """ - The test case is based on the following assumptions: - - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. - ``` - zsink = -4.2 - zsource = -3 - ``` - - - The polyline file has the following structure: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 - 45.20 6.35 -3.00 - ``` - """ - polyfile = PolyFile("tests/data/input/source-sink/leftsor.pliz") - - z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) - assert z_source == [-3] - assert z_sink == [-4.2] - - def test_get_z_sources_sinks_multiple_values(self): - """ - The test case is based on the following assumptions: - - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the - third and forth columns' values, and if there is a fifth column it will be ignored. - ``` - zsink = [-4.2, -5.35] - zsource = [-3, -2.90] - ``` - - - The polyline file has the following structure: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 -5.35 - ... - - ... - 45.20 6.35 -3.00 -2.90 - ``` - when there is a fifth column: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 -5.35 0 - ... - - ... - 45.20 6.35 -3.00 -2.90 0 - ``` - """ - polyfile = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") - - z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) - assert z_source == [-3, -2.90] - assert z_sink == [-4.2, -5.35] - - def test_default(self): - """ - The test case is based on the following assumptions: - - temperature, salinity, and initialtracer_anyname are other quantities in the ext file. - - The ext file has the following structure: - ``` - QUANTITY=initialtemperature - FILENAME=right.pol - FILETYPE=10 - METHOD=4 - OPERAND=O - VALUE=11. - - QUANTITY=initialsalinity - FILENAME=right.pol - FILETYPE=10 - METHOD=4 - OPERAND=O - VALUE=11. - - QUANTITY=initialtracer_anyname - FILENAME=leftsor.pliz - FILETYPE=9 - METHOD=1 - OPERAND=O - - QUANTITY=discharge_salinity_temperature_sorsin - FILENAME=leftsor.pliz - FILETYPE=9 - METHOD=1 - OPERAND=O - AREA=1.0 - ``` - - - The time file has the following structure: - ``` - 0.0 1.0 2.0 3.0 4.0 - 100 1.0 2.0 3.0 4.0 - 200 1.0 2.0 3.0 4.0 - 300 1.0 2.0 3.0 4.0 - 400 1.0 2.0 3.0 4.0 - ``` - - - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. - ``` - zsink = -4.2 - zsource = -3 - ``` - - - The polyline file has the following structure: - ``` - L1 - 2 3 - 63.350456 12.950216 -4.200000 - 45.200344 6.350155 -3.000 - ``` - - """ - forcing = ExtOldForcing( - quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, - filename="tests/data/input/source-sink/leftsor.pliz", - filetype=9, - method="1", - operand="O", - area=1.0, - ) - - ext_file_other_quantities = [ - "salinity", - "temperature", - "initialtracer_anyname", - ] - - new_quantity_block = SourceSinkConverter().convert( - forcing, ext_file_other_quantities - ) - assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] - assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] - assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] - assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] - assert new_quantity_block.zsink == [-4.2] - assert new_quantity_block.zsource == [-3] - - def test_4_5_columns_polyline(self): - """ - The test case is based on the assumptions of the default test plus the following changes: - - - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the - third and forth columns' values, and if there is a fifth column it will be ignored. - ``` - zsink = [-4.2, -5.35] - zsource = [-3, -2.90] - ``` - - - The polyline file has the following structure: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 -5.35 - ... - - ... - 45.20 6.35 -3.00 -2.90 - ``` - when there is a fifth column: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 -5.35 0 - ... - - ... - 45.20 6.35 -3.00 -2.90 0 - ``` - - """ - forcing = ExtOldForcing( - quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, - filename="tests/data/input/source-sink/leftsor-5-columns.pliz", - filetype=9, - method="1", - operand="O", - area=1.0, - ) - - ext_file_other_quantities = [ - "salinity", - "temperature", - "initialtracer_anyname", - ] - tim_file = Path("tests/data/input/source-sink/leftsor.tim") - with patch("pathlib.Path.with_suffix", return_value=tim_file): - new_quantity_block = SourceSinkConverter().convert( - forcing, ext_file_other_quantities - ) - assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] - assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] - assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] - assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] - assert new_quantity_block.zsink == [-4.2, -5.35] - assert new_quantity_block.zsource == [-3, -2.90] diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py new file mode 100644 index 000000000..ac331e0af --- /dev/null +++ b/tests/tools/test_converters_source_sink.py @@ -0,0 +1,246 @@ +from pathlib import Path +from unittest.mock import patch + +import pytest + +from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity +from hydrolib.core.dflowfm.polyfile.models import PolyFile +from hydrolib.tools.ext_old_to_new.converters import SourceSinkConverter + + +class TestParseTimFileForSourceSink: + def test_default(self): + """ + The test case is based on the following assumptions: + - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 4 quantities. + """ + tim_file = Path("tests/data/input/source-sink/leftsor.tim") + ext_file_quantity_list = [ + "discharge", + "temperature", + "salinity", + "initialtracer_anyname", + ] + converter = SourceSinkConverter() + + time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) + assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] + assert time_series_data["temperaturedelta"] == [2.0, 2.0, 2.0, 2.0, 2.0] + assert time_series_data["salinitydelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] + assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] + + def test_list_of_ext_quantities_tim_column_mismatch(self): + """ + The test case is based on the following assumptions: + - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 3 quantities. + """ + tim_file = Path("tests/data/input/source-sink/leftsor.tim") + ext_file_quantity_list = ["discharge", "temperature", "salinity"] + converter = SourceSinkConverter() + with pytest.raises(ValueError): + converter.parse_tim_model(tim_file, ext_file_quantity_list) + + +class TestSourceSinkConverter: + + def test_get_z_sources_sinks_single_value(self): + """ + The test case is based on the following assumptions: + - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. + ``` + zsink = -4.2 + zsource = -3 + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 + 45.20 6.35 -3.00 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor.pliz") + + z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) + assert z_source == [-3] + assert z_sink == [-4.2] + + def test_get_z_sources_sinks_multiple_values(self): + """ + The test case is based on the following assumptions: + - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the + third and forth columns' values, and if there is a fifth column it will be ignored. + ``` + zsink = [-4.2, -5.35] + zsource = [-3, -2.90] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 + ... + + ... + 45.20 6.35 -3.00 -2.90 + ``` + when there is a fifth column: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 0 + ... + + ... + 45.20 6.35 -3.00 -2.90 0 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") + + z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) + assert z_source == [-3, -2.90] + assert z_sink == [-4.2, -5.35] + + def test_default(self): + """ + The test case is based on the following assumptions: + - temperature, salinity, and initialtracer_anyname are other quantities in the ext file. + - The ext file has the following structure: + ``` + QUANTITY=initialtemperature + FILENAME=right.pol + FILETYPE=10 + METHOD=4 + OPERAND=O + VALUE=11. + + QUANTITY=initialsalinity + FILENAME=right.pol + FILETYPE=10 + METHOD=4 + OPERAND=O + VALUE=11. + + QUANTITY=initialtracer_anyname + FILENAME=leftsor.pliz + FILETYPE=9 + METHOD=1 + OPERAND=O + + QUANTITY=discharge_salinity_temperature_sorsin + FILENAME=leftsor.pliz + FILETYPE=9 + METHOD=1 + OPERAND=O + AREA=1.0 + ``` + + - The time file has the following structure: + ``` + 0.0 1.0 2.0 3.0 4.0 + 100 1.0 2.0 3.0 4.0 + 200 1.0 2.0 3.0 4.0 + 300 1.0 2.0 3.0 4.0 + 400 1.0 2.0 3.0 4.0 + ``` + + - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. + ``` + zsink = -4.2 + zsource = -3 + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.350456 12.950216 -4.200000 + 45.200344 6.350155 -3.000 + ``` + + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor.pliz", + filetype=9, + method="1", + operand="O", + area=1.0, + ) + + ext_file_other_quantities = [ + "salinity", + "temperature", + "initialtracer_anyname", + ] + + new_quantity_block = SourceSinkConverter().convert( + forcing, ext_file_other_quantities + ) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == [-4.2] + assert new_quantity_block.zsource == [-3] + + def test_4_5_columns_polyline(self): + """ + The test case is based on the assumptions of the default test plus the following changes: + + - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the + third and forth columns' values, and if there is a fifth column it will be ignored. + ``` + zsink = [-4.2, -5.35] + zsource = [-3, -2.90] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 + ... + + ... + 45.20 6.35 -3.00 -2.90 + ``` + when there is a fifth column: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 0 + ... + + ... + 45.20 6.35 -3.00 -2.90 0 + ``` + + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor-5-columns.pliz", + filetype=9, + method="1", + operand="O", + area=1.0, + ) + + ext_file_other_quantities = [ + "salinity", + "temperature", + "initialtracer_anyname", + ] + tim_file = Path("tests/data/input/source-sink/leftsor.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + new_quantity_block = SourceSinkConverter().convert( + forcing, ext_file_other_quantities + ) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == [-4.2, -5.35] + assert new_quantity_block.zsource == [-3, -2.90] From 0396cb49cdee40dcefdf6c2e9b81f2d1689f7452 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 19:26:52 +0100 Subject: [PATCH 151/193] add missing test files --- tests/data/input/source-sink/leftsor-5-columns.pliz | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 tests/data/input/source-sink/leftsor-5-columns.pliz diff --git a/tests/data/input/source-sink/leftsor-5-columns.pliz b/tests/data/input/source-sink/leftsor-5-columns.pliz new file mode 100644 index 000000000..a3006d269 --- /dev/null +++ b/tests/data/input/source-sink/leftsor-5-columns.pliz @@ -0,0 +1,4 @@ +L1 + 2 5 + 63.35 12.95 -4.20 -5.35 0 + 45.20 6.35 -3.00 -2.90 0 From 3575aba91dc5bc61d9608a6ccd94425f07c20ea0 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 19:58:23 +0100 Subject: [PATCH 152/193] add all cases of the temperature/salinity in the external forcing file wrt the tim file --- .../no_temperature_no_salinity.tim | 5 ++ .../no_temperature_or_salinity.tim | 5 ++ tests/tools/test_converters_source_sink.py | 52 +++++++++++++++++++ 3 files changed, 62 insertions(+) create mode 100644 tests/data/input/source-sink/no_temperature_no_salinity.tim create mode 100644 tests/data/input/source-sink/no_temperature_or_salinity.tim diff --git a/tests/data/input/source-sink/no_temperature_no_salinity.tim b/tests/data/input/source-sink/no_temperature_no_salinity.tim new file mode 100644 index 000000000..b665a88be --- /dev/null +++ b/tests/data/input/source-sink/no_temperature_no_salinity.tim @@ -0,0 +1,5 @@ +0.0 1.0 4.0 +100 1.0 4.0 +200 1.0 4.0 +300 1.0 4.0 +400 1.0 4.0 diff --git a/tests/data/input/source-sink/no_temperature_or_salinity.tim b/tests/data/input/source-sink/no_temperature_or_salinity.tim new file mode 100644 index 000000000..cddc20667 --- /dev/null +++ b/tests/data/input/source-sink/no_temperature_or_salinity.tim @@ -0,0 +1,5 @@ +0.0 1.0 3.0 4.0 +100 1.0 3.0 4.0 +200 1.0 3.0 4.0 +300 1.0 3.0 4.0 +400 1.0 3.0 4.0 diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py index ac331e0af..56f9cb264 100644 --- a/tests/tools/test_converters_source_sink.py +++ b/tests/tools/test_converters_source_sink.py @@ -40,6 +40,58 @@ def test_list_of_ext_quantities_tim_column_mismatch(self): with pytest.raises(ValueError): converter.parse_tim_model(tim_file, ext_file_quantity_list) + def test_no_temperature(self): + """ + The test case is based on the following assumptions: + - The tim file has 3 columns (plus the time column), but the list of ext quantities has only 3 quantities. + """ + tim_file = Path("tests/data/input/source-sink/no_temperature_or_salinity.tim") + ext_file_quantity_list = [ + "discharge", + "salinity", + "initialtracer_anyname", + ] + converter = SourceSinkConverter() + + time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) + assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] + assert time_series_data["salinitydelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] + assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] + + def test_no_salinity(self): + """ + The test case is based on the following assumptions: + - The tim file has 3 columns (plus the time column), and the list of ext quantities has only 3 quantities. + """ + tim_file = Path("tests/data/input/source-sink/no_temperature_or_salinity.tim") + ext_file_quantity_list = [ + "discharge", + "temperature", + "initialtracer_anyname", + ] + converter = SourceSinkConverter() + + time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) + assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] + assert time_series_data["temperaturedelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] + assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] + + def test_no_salinity_no_temperature(self): + """ + The test case is based on the following assumptions: + - The tim file has 2 columns (plus the time column), and the list of ext quantities has only 2 quantities. + """ + tim_file = Path("tests/data/input/source-sink/no_temperature_no_salinity.tim") + ext_file_quantity_list = [ + "discharge", + "initialtracer_anyname", + ] + converter = SourceSinkConverter() + + time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) + assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] + assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] + class TestSourceSinkConverter: From 966f8d0de6eaf80fa99a0bd2c9d08e799020d960 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 20:13:25 +0100 Subject: [PATCH 153/193] add no temperature no salinity to the SourceSink converter --- tests/tools/test_converters_source_sink.py | 40 ++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py index 56f9cb264..edf534fe6 100644 --- a/tests/tools/test_converters_source_sink.py +++ b/tests/tools/test_converters_source_sink.py @@ -296,3 +296,43 @@ def test_4_5_columns_polyline(self): assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] assert new_quantity_block.zsink == [-4.2, -5.35] assert new_quantity_block.zsource == [-3, -2.90] + + def test_no_temperature_no_salinity(self): + """ + The test case is based on the assumptions of the default test plus the following changes: + + - The timfile has only two columns (plus the time column), and the list of ext quantities has only two quantities. + ``` + + + - The tim file file has the following structure: + ``` + 0.0 1.0 4.0 + 100 1.0 4.0 + 200 1.0 4.0 + 300 1.0 4.0 + 400 1.0 4.0 + ``` + + """ + forcing = ExtOldForcing( + quantity=ExtOldQuantity.DischargeSalinityTemperatureSorSin, + filename="tests/data/input/source-sink/leftsor.pliz", + filetype=9, + method="1", + operand="O", + area=1.0, + ) + + ext_file_other_quantities = [ + "initialtracer_anyname", + ] + tim_file = Path("tests/data/input/source-sink/no_temperature_no_salinity.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + new_quantity_block = SourceSinkConverter().convert( + forcing, ext_file_other_quantities + ) + assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] + assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] + assert new_quantity_block.zsink == [-4.2] + assert new_quantity_block.zsource == [-3] From 6b530a5e9df1523d48ca34e553aa88876a168b53 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 23 Dec 2024 21:26:51 +0100 Subject: [PATCH 154/193] make the `discharge` attribute not optional --- hydrolib/core/dflowfm/ext/models.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 96e082822..6ae32aace 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -210,7 +210,7 @@ class SourceSink(INIBasedModel): zsource: Optional[Union[float, List[float]]] = Field(alias="zSource") zsink: Optional[Union[float, List[float]]] = Field(alias="zSink") - discharge: Optional[Union[float, List[float]]] = Field(alias="discharge") + discharge: Union[float, List[float]] = Field(alias="discharge") area: Optional[float] = Field(alias="Area") salinitydelta: Optional[Union[List[float], float]] = Field(alias="SalinityDelta") From 0c2b34e24e2762159047fbf27a801bf16f9b8985 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 12:11:09 +0100 Subject: [PATCH 155/193] replace equality be `is` to check None --- tests/dflowfm/test_extold.py | 42 ++++++++++++++++++------------------ 1 file changed, 21 insertions(+), 21 deletions(-) diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/test_extold.py index 89a6a7b71..24b745d9b 100644 --- a/tests/dflowfm/test_extold.py +++ b/tests/dflowfm/test_extold.py @@ -812,38 +812,38 @@ def test_load_model(self): forcing_1 = model.forcing[0] assert forcing_1.quantity == ExtOldQuantity.InternalTidesFrictionCoefficient assert forcing_1.filename.filepath == Path("surroundingDomain.pol") - assert forcing_1.varname == None - assert forcing_1.sourcemask.filepath == None + assert forcing_1.varname is None + assert forcing_1.sourcemask.filepath is None assert forcing_1.filetype == ExtOldFileType.NetCDFGridData assert forcing_1.method == ExtOldMethod.InterpolateSpace assert forcing_1.operand == Operand.add assert forcing_1.value == pytest.approx(0.0125) - assert forcing_1.factor == None - assert forcing_1.ifrctyp == None - assert forcing_1.averagingtype == None - assert forcing_1.relativesearchcellsize == None - assert forcing_1.extrapoltol == None - assert forcing_1.percentileminmax == None - assert forcing_1.area == None - assert forcing_1.nummin == None + assert forcing_1.factor is None + assert forcing_1.ifrctyp is None + assert forcing_1.averagingtype is None + assert forcing_1.relativesearchcellsize is None + assert forcing_1.extrapoltol is None + assert forcing_1.percentileminmax is None + assert forcing_1.area is None + assert forcing_1.nummin is None forcing_2 = model.forcing[1] assert forcing_2.quantity == ExtOldQuantity.WaterLevelBnd assert forcing_2.filename.filepath == Path("OB_001_orgsize.pli") - assert forcing_2.varname == None - assert forcing_2.sourcemask.filepath == None + assert forcing_2.varname is None + assert forcing_2.sourcemask.filepath is None assert forcing_2.filetype == ExtOldFileType.Polyline assert forcing_2.method == ExtOldMethod.InterpolateTimeAndSpaceSaveWeights assert forcing_2.operand == Operand.override - assert forcing_2.value == None - assert forcing_2.factor == None - assert forcing_2.ifrctyp == None - assert forcing_2.averagingtype == None - assert forcing_2.relativesearchcellsize == None - assert forcing_2.extrapoltol == None - assert forcing_2.percentileminmax == None - assert forcing_2.area == None - assert forcing_2.nummin == None + assert forcing_2.value is None + assert forcing_2.factor is None + assert forcing_2.ifrctyp is None + assert forcing_2.averagingtype is None + assert forcing_2.relativesearchcellsize is None + assert forcing_2.extrapoltol is None + assert forcing_2.percentileminmax is None + assert forcing_2.area is None + assert forcing_2.nummin is None def test_save_model(self): From 545a532f2a3ccf1d568549dcc15fe2bdb35795cd Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 12:16:34 +0100 Subject: [PATCH 156/193] move test_extold.py to a sub dir --- tests/dflowfm/extold/__init__.py | 0 tests/dflowfm/{ => extold}/test_extold.py | 0 2 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 tests/dflowfm/extold/__init__.py rename tests/dflowfm/{ => extold}/test_extold.py (100%) diff --git a/tests/dflowfm/extold/__init__.py b/tests/dflowfm/extold/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/tests/dflowfm/test_extold.py b/tests/dflowfm/extold/test_extold.py similarity index 100% rename from tests/dflowfm/test_extold.py rename to tests/dflowfm/extold/test_extold.py From d2bceaa88b9e9bc87d1f21676a8fe21131857aed Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 12:26:55 +0100 Subject: [PATCH 157/193] move TestExtForcing to test_ext_forcing.py --- tests/dflowfm/extold/test_ext_forcing.py | 652 +++++++++++++++++++++++ tests/dflowfm/extold/test_extold.py | 638 ---------------------- 2 files changed, 652 insertions(+), 638 deletions(-) create mode 100644 tests/dflowfm/extold/test_ext_forcing.py diff --git a/tests/dflowfm/extold/test_ext_forcing.py b/tests/dflowfm/extold/test_ext_forcing.py new file mode 100644 index 000000000..99bce7d85 --- /dev/null +++ b/tests/dflowfm/extold/test_ext_forcing.py @@ -0,0 +1,652 @@ +from pathlib import Path +from typing import List + +import pytest + +from hydrolib.core.basemodel import DiskOnlyFileModel +from hydrolib.core.dflowfm.common.models import Operand +from hydrolib.core.dflowfm.extold.models import ( + ExtOldExtrapolationMethod, + ExtOldFileType, + ExtOldForcing, + ExtOldMethod, + ExtOldModel, + ExtOldQuantity, + ExtOldTracerQuantity, +) +from hydrolib.core.dflowfm.polyfile.models import PolyFile +from hydrolib.core.dflowfm.tim.models import TimModel + + +class TestExtForcing: + def test_initialize_with_old_external_forcing_file( + self, + old_forcing_file: Path, + old_forcing_file_quantities: List[str], + old_forcing_comment_len: int, + ): + model = ExtOldModel(old_forcing_file) + assert isinstance(model, ExtOldModel) + assert len(model.comment) == old_forcing_comment_len + assert len(model.forcing) == len(old_forcing_file_quantities) + forcing_1 = model.forcing[0] + assert isinstance(forcing_1, ExtOldForcing) + quantities = [forcing.quantity for forcing in model.forcing] + assert all([quantity in old_forcing_file_quantities for quantity in quantities]) + + def test_initialize_with_timfile_initializes_timmodel(self, input_files_dir: Path): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=input_files_dir.joinpath("tim/triple_data_for_timeseries.tim"), + filetype=ExtOldFileType.TimeSeries, + method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, + operand=Operand.override, + ) + + assert isinstance(forcing.filename, TimModel) + + def test_initialize_with_polyfile_initializes_polyfile(self, input_files_dir: Path): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=input_files_dir.joinpath("dflowfm_individual_files/test.pli"), + filetype=ExtOldFileType.Polyline, + method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, + operand=Operand.override, + ) + + assert isinstance(forcing.filename, PolyFile) + + def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel( + self, input_files_dir: Path + ): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename=input_files_dir.joinpath("file_load_test/FlowFM_net.nc"), + filetype=ExtOldFileType.NetCDFGridData, + method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, + operand=Operand.override, + ) + + assert isinstance(forcing.filename, DiskOnlyFileModel) + + class TestValidateQuantity: + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_string_equal_casing(self, quantity): + quantity_str = quantity.value + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity + + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_string_different_casing(self, quantity): + quantity_str = quantity.value.upper() + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity + + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_enum(self, quantity): + forcing = ExtOldForcing( + quantity=quantity, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity + + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_tracerquantity_appended_with_tracer_name(self, quantity): + quantity_str = quantity + "Some_Tracer_Name" + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity_str + + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_just_a_tracerquantity_raises_error(self, quantity): + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, filename="", filetype=9, method=1, operand="O" + ) + + exp_error = ( + f"QUANTITY '{quantity.value}' should be appended with a tracer name." + ) + assert exp_error in str(error.value) + + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_tracerquantity_string_without_tracer_name_raises_error( + self, quantity + ): + quantity_str = quantity.value + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity_str, + filename="", + filetype=9, + method=1, + operand="O", + ) + + assert ( + f"QUANTITY '{quantity_str}' should be appended with a tracer name." + in str(error.value) + ) + + def test_with_invalid_quantity_string_raises_value_error( + self, + ): + quantity_str = "invalid" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity_str, + filename="", + filetype=9, + method=1, + operand="O", + ) + + supported_values_str = ", ".join(([x.value for x in ExtOldQuantity])) + assert ( + f"QUANTITY 'invalid' not supported. Supported values: {supported_values_str}" + in str(error.value) + ) + + class TestValidateOperand: + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_string_equal_casing(self, operand): + operand_str = operand.value + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + assert forcing.operand == operand + + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_string_different_casing(self, operand): + operand_str = operand.value.lower() + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + assert forcing.operand == operand + + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_enum(self, operand): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand, + ) + assert forcing.operand == operand + + def test_with_invalid_operand_string_raises_value_error( + self, + ): + operand_str = "invalid" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + + supported_values_str = ", ".join(([x.value for x in Operand])) + assert ( + f"OPERAND 'invalid' not supported. Supported values: {supported_values_str}" + in str(error.value) + ) + + class TestValidateVarName: + def test_validate_varname_with_valid_filetype_11(self): + filetype = 11 + varname = "some_varname" + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + varname=varname, + filetype=filetype, + method=1, + operand="O", + ) + + assert forcing.varname == varname + + def test_validate_varname_with_invalid_filetype(self): + filetype = 9 + varname = "some_varname" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + varname=varname, + filetype=filetype, + method=1, + operand="O", + ) + + exp_msg = "VARNAME only allowed when FILETYPE is 11" + assert exp_msg in str(error.value) + + class TestValidateSourceMask: + @pytest.mark.parametrize("filetype", [4, 6]) + def test_validate_sourcemask_with_valid_filetype_4_or_6(self, filetype): + sourcemask = "sourcemask.file" + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + sourcemask=sourcemask, + filetype=filetype, + method=1, + operand="O", + ) + + assert forcing.sourcemask.filepath.name == sourcemask + + def test_validate_sourcemask_with_invalid_filetype(self): + filetype = 9 + sourcemask = "sourcemask.file" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + sourcemask=sourcemask, + filetype=filetype, + method=1, + operand="O", + ) + + exp_msg = "SOURCEMASK only allowed when FILETYPE is 4 or 6" + assert exp_msg in str(error.value) + + class TestValidateExtrapolationMethod: + def test_validate_extrapolation_method_with_valid_method_3(self): + method = 3 + extrapolation_method = ( + ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox + ) + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + extrapolation_method=extrapolation_method, + operand="O", + ) + + assert forcing.extrapolation_method == extrapolation_method + + def test_validate_extrapolation_method_with_invalid_method(self): + method = 1 + extrapolation_method = ( + ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox + ) + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + extrapolation_method=extrapolation_method, + operand="O", + ) + + exp_msg = "EXTRAPOLATION_METHOD only allowed to be 1 when METHOD is 3" + assert exp_msg in str(error.value) + + class TestValidateMaxSearchRadius: + def test_validate_maxsearchradius_method_with_valid_extrapolation_method_1( + self, + ): + extrapolation_method = 1 + maxsearchradius = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.AirPressureWindXWindY, + filename="", + filetype=3, + method=3, + extrapolation_method=extrapolation_method, + maxsearchradius=maxsearchradius, + operand="O", + ) + + assert forcing.extrapolation_method == extrapolation_method + + def test_validate_maxsearchradius_method_with_invalid_extrapolation_method( + self, + ): + extrapolation_method = 0 + maxsearchradius = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.AirPressureWindXWindY, + filename="", + filetype=3, + method=3, + extrapolation_method=extrapolation_method, + maxsearchradius=maxsearchradius, + operand="O", + ) + + exp_msg = "MAXSEARCHRADIUS only allowed when EXTRAPOLATION_METHOD is 1" + assert exp_msg in str(error.value) + + class TestValidateValue: + def test_validate_value_with_valid_method_4(self): + method = 4 + value = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + value=value, + ) + + assert forcing.value == pytest.approx(value) + + def test_validate_sourcemask_with_invalid_method(self): + method = 1 + value = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + value=value, + ) + + exp_msg = "VALUE only allowed when METHOD is 4" + assert exp_msg in str(error.value) + + class TestValidateFactor: + def test_validate_factor_with_valid_quantity_initialtracer(self): + quantity = ExtOldTracerQuantity.InitialTracer + "Some_Tracer_Name" + factor = 1.23 + + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + factor=factor, + ) + + assert forcing.factor == pytest.approx(factor) + + def test_validate_factor_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + factor = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + factor=factor, + ) + + exp_msg = "FACTOR only allowed when QUANTITY starts with initialtracer" + assert exp_msg in str(error.value) + + class TestValidateIFrcTyp: + def test_validate_ifrctyp_with_valid_quantity_frictioncoefficient(self): + quantity = ExtOldQuantity.FrictionCoefficient + ifrctyp = 1.23 + + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + ifrctyp=ifrctyp, + ) + + assert forcing.ifrctyp == pytest.approx(ifrctyp) + + def test_validate_ifrctyp_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + ifrctyp = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + ifrctyp=ifrctyp, + ) + + exp_msg = "IFRCTYP only allowed when QUANTITY is frictioncoefficient" + assert exp_msg in str(error.value) + + class TestValidateAveragingType: + def test_validate_averagingtype_with_valid_method_6(self): + method = 6 + averagingtype = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + averagingtype=averagingtype, + ) + + assert forcing.averagingtype == pytest.approx(averagingtype) + + def test_validate_averagingtype_with_invalid_method(self): + method = 1 + averagingtype = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + averagingtype=averagingtype, + ) + + exp_msg = "AVERAGINGTYPE only allowed when METHOD is 6" + assert exp_msg in str(error.value) + + class TestValidateRelativeSearchCellSize: + def test_validate_relativesearchcellsize_with_valid_method_6(self): + method = 6 + relativesearchcellsize = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + relativesearchcellsize=relativesearchcellsize, + ) + + assert forcing.relativesearchcellsize == pytest.approx( + relativesearchcellsize + ) + + def test_validate_relativesearchcellsize_with_invalid_method(self): + method = 1 + relativesearchcellsize = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + relativesearchcellsize=relativesearchcellsize, + ) + + exp_msg = "RELATIVESEARCHCELLSIZE only allowed when METHOD is 6" + assert exp_msg in str(error.value) + + class TestValidateExtrapolTol: + def test_validate_extrapoltol_with_valid_method_5(self): + method = 5 + extrapoltol = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + extrapoltol=extrapoltol, + ) + + assert forcing.extrapoltol == pytest.approx(extrapoltol) + + def test_validate_extrapoltol_with_invalid_method(self): + method = 1 + extrapoltol = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + extrapoltol=extrapoltol, + ) + + exp_msg = "EXTRAPOLTOL only allowed when METHOD is 5" + assert exp_msg in str(error.value) + + class TestValidatePercentileMinMax: + def test_validate_percentileminmax_with_valid_method_6(self): + method = 6 + percentileminmax = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + percentileminmax=percentileminmax, + ) + + assert forcing.percentileminmax == pytest.approx(percentileminmax) + + def test_validate_percentileminmax_with_invalid_method(self): + method = 1 + percentileminmax = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + percentileminmax=percentileminmax, + ) + + exp_msg = "PERCENTILEMINMAX only allowed when METHOD is 6" + assert exp_msg in str(error.value) + + class TestValidateArea: + def test_validate_area_with_valid_quantity_discharge_salinity_temperature_sorsin( + self, + ): + quantity = ExtOldQuantity.DischargeSalinityTemperatureSorSin + area = 1.23 + + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + area=area, + ) + + assert forcing.area == pytest.approx(area) + + def test_validate_area_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + area = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + area=area, + ) + + exp_msg = "AREA only allowed when QUANTITY is discharge_salinity_temperature_sorsin" + assert exp_msg in str(error.value) + + class TestValidateNumMin: + def test_validate_nummin_with_valid_method_6(self): + method = 6 + nummin = 123 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + nummin=nummin, + ) + + assert forcing.nummin == nummin + + def test_validate_nummin_with_invalid_method(self): + method = 1 + nummin = 123 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + nummin=nummin, + ) + + exp_msg = "NUMMIN only allowed when METHOD is 6" + assert exp_msg in str(error.value) diff --git a/tests/dflowfm/extold/test_extold.py b/tests/dflowfm/extold/test_extold.py index 24b745d9b..ef33b1ac9 100644 --- a/tests/dflowfm/extold/test_extold.py +++ b/tests/dflowfm/extold/test_extold.py @@ -13,7 +13,6 @@ from hydrolib.core.dflowfm.extold.models import ( HEADER, INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES, - ExtOldExtrapolationMethod, ExtOldFileType, ExtOldForcing, ExtOldInitialConditionQuantity, @@ -22,12 +21,9 @@ ExtOldParametersQuantity, ExtOldQuantity, ExtOldSourcesSinks, - ExtOldTracerQuantity, ) from hydrolib.core.dflowfm.extold.parser import Parser from hydrolib.core.dflowfm.extold.serializer import Serializer -from hydrolib.core.dflowfm.polyfile.models import PolyFile -from hydrolib.core.dflowfm.tim.models import TimModel from tests.utils import assert_files_equal, create_temp_file_from_lines, get_temp_file quantities_with_prefixes = copy.deepcopy(INITIAL_CONDITION_QUANTITIES_VALID_PREFIXES) @@ -129,640 +125,6 @@ """ -class TestExtForcing: - def test_initialize_with_old_external_forcing_file( - self, - old_forcing_file: Path, - old_forcing_file_quantities: List[str], - old_forcing_comment_len: int, - ): - model = ExtOldModel(old_forcing_file) - assert isinstance(model, ExtOldModel) - assert len(model.comment) == old_forcing_comment_len - assert len(model.forcing) == len(old_forcing_file_quantities) - forcing_1 = model.forcing[0] - assert isinstance(forcing_1, ExtOldForcing) - quantities = [forcing.quantity for forcing in model.forcing] - assert all([quantity in old_forcing_file_quantities for quantity in quantities]) - - def test_initialize_with_timfile_initializes_timmodel(self, input_files_dir: Path): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename=input_files_dir.joinpath("tim/triple_data_for_timeseries.tim"), - filetype=ExtOldFileType.TimeSeries, - method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, - operand=Operand.override, - ) - - assert isinstance(forcing.filename, TimModel) - - def test_initialize_with_polyfile_initializes_polyfile(self, input_files_dir: Path): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename=input_files_dir.joinpath("dflowfm_individual_files/test.pli"), - filetype=ExtOldFileType.Polyline, - method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, - operand=Operand.override, - ) - - assert isinstance(forcing.filename, PolyFile) - - def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel( - self, input_files_dir: Path - ): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename=input_files_dir.joinpath("file_load_test/FlowFM_net.nc"), - filetype=ExtOldFileType.NetCDFGridData, - method=ExtOldMethod.InterpolateTimeAndSpaceSaveWeights, - operand=Operand.override, - ) - - assert isinstance(forcing.filename, DiskOnlyFileModel) - - class TestValidateQuantity: - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_string_equal_casing(self, quantity): - quantity_str = quantity.value - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity - - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_string_different_casing(self, quantity): - quantity_str = quantity.value.upper() - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity - - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_enum(self, quantity): - forcing = ExtOldForcing( - quantity=quantity, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity - - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_tracerquantity_appended_with_tracer_name(self, quantity): - quantity_str = quantity + "Some_Tracer_Name" - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity_str - - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_just_a_tracerquantity_raises_error(self, quantity): - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, filename="", filetype=9, method=1, operand="O" - ) - - exp_error = ( - f"QUANTITY '{quantity.value}' should be appended with a tracer name." - ) - assert exp_error in str(error.value) - - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_tracerquantity_string_without_tracer_name_raises_error( - self, quantity - ): - quantity_str = quantity.value - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity_str, - filename="", - filetype=9, - method=1, - operand="O", - ) - - assert ( - f"QUANTITY '{quantity_str}' should be appended with a tracer name." - in str(error.value) - ) - - def test_with_invalid_quantity_string_raises_value_error( - self, - ): - quantity_str = "invalid" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity_str, - filename="", - filetype=9, - method=1, - operand="O", - ) - - supported_values_str = ", ".join(([x.value for x in ExtOldQuantity])) - assert ( - f"QUANTITY 'invalid' not supported. Supported values: {supported_values_str}" - in str(error.value) - ) - - class TestValidateOperand: - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_string_equal_casing(self, operand): - operand_str = operand.value - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand_str, - ) - assert forcing.operand == operand - - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_string_different_casing(self, operand): - operand_str = operand.value.lower() - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand_str, - ) - assert forcing.operand == operand - - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_enum(self, operand): - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand, - ) - assert forcing.operand == operand - - def test_with_invalid_operand_string_raises_value_error( - self, - ): - operand_str = "invalid" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand_str, - ) - - supported_values_str = ", ".join(([x.value for x in Operand])) - assert ( - f"OPERAND 'invalid' not supported. Supported values: {supported_values_str}" - in str(error.value) - ) - - class TestValidateVarName: - def test_validate_varname_with_valid_filetype_11(self): - filetype = 11 - varname = "some_varname" - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - varname=varname, - filetype=filetype, - method=1, - operand="O", - ) - - assert forcing.varname == varname - - def test_validate_varname_with_invalid_filetype(self): - filetype = 9 - varname = "some_varname" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - varname=varname, - filetype=filetype, - method=1, - operand="O", - ) - - exp_msg = "VARNAME only allowed when FILETYPE is 11" - assert exp_msg in str(error.value) - - class TestValidateSourceMask: - @pytest.mark.parametrize("filetype", [4, 6]) - def test_validate_sourcemask_with_valid_filetype_4_or_6(self, filetype): - sourcemask = "sourcemask.file" - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - sourcemask=sourcemask, - filetype=filetype, - method=1, - operand="O", - ) - - assert forcing.sourcemask.filepath.name == sourcemask - - def test_validate_sourcemask_with_invalid_filetype(self): - filetype = 9 - sourcemask = "sourcemask.file" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - sourcemask=sourcemask, - filetype=filetype, - method=1, - operand="O", - ) - - exp_msg = "SOURCEMASK only allowed when FILETYPE is 4 or 6" - assert exp_msg in str(error.value) - - class TestValidateExtrapolationMethod: - def test_validate_extrapolation_method_with_valid_method_3(self): - method = 3 - extrapolation_method = ( - ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox - ) - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - extrapolation_method=extrapolation_method, - operand="O", - ) - - assert forcing.extrapolation_method == extrapolation_method - - def test_validate_extrapolation_method_with_invalid_method(self): - method = 1 - extrapolation_method = ( - ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox - ) - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - extrapolation_method=extrapolation_method, - operand="O", - ) - - exp_msg = "EXTRAPOLATION_METHOD only allowed to be 1 when METHOD is 3" - assert exp_msg in str(error.value) - - class TestValidateMaxSearchRadius: - def test_validate_maxsearchradius_method_with_valid_extrapolation_method_1( - self, - ): - extrapolation_method = 1 - maxsearchradius = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.AirPressureWindXWindY, - filename="", - filetype=3, - method=3, - extrapolation_method=extrapolation_method, - maxsearchradius=maxsearchradius, - operand="O", - ) - - assert forcing.extrapolation_method == extrapolation_method - - def test_validate_maxsearchradius_method_with_invalid_extrapolation_method( - self, - ): - extrapolation_method = 0 - maxsearchradius = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.AirPressureWindXWindY, - filename="", - filetype=3, - method=3, - extrapolation_method=extrapolation_method, - maxsearchradius=maxsearchradius, - operand="O", - ) - - exp_msg = "MAXSEARCHRADIUS only allowed when EXTRAPOLATION_METHOD is 1" - assert exp_msg in str(error.value) - - class TestValidateValue: - def test_validate_value_with_valid_method_4(self): - method = 4 - value = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - value=value, - ) - - assert forcing.value == pytest.approx(value) - - def test_validate_sourcemask_with_invalid_method(self): - method = 1 - value = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - value=value, - ) - - exp_msg = "VALUE only allowed when METHOD is 4" - assert exp_msg in str(error.value) - - class TestValidateFactor: - def test_validate_factor_with_valid_quantity_initialtracer(self): - quantity = ExtOldTracerQuantity.InitialTracer + "Some_Tracer_Name" - factor = 1.23 - - forcing = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - factor=factor, - ) - - assert forcing.factor == pytest.approx(factor) - - def test_validate_factor_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - factor = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - factor=factor, - ) - - exp_msg = "FACTOR only allowed when QUANTITY starts with initialtracer" - assert exp_msg in str(error.value) - - class TestValidateIFrcTyp: - def test_validate_ifrctyp_with_valid_quantity_frictioncoefficient(self): - quantity = ExtOldQuantity.FrictionCoefficient - ifrctyp = 1.23 - - forcing = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - ifrctyp=ifrctyp, - ) - - assert forcing.ifrctyp == pytest.approx(ifrctyp) - - def test_validate_ifrctyp_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - ifrctyp = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - ifrctyp=ifrctyp, - ) - - exp_msg = "IFRCTYP only allowed when QUANTITY is frictioncoefficient" - assert exp_msg in str(error.value) - - class TestValidateAveragingType: - def test_validate_averagingtype_with_valid_method_6(self): - method = 6 - averagingtype = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - averagingtype=averagingtype, - ) - - assert forcing.averagingtype == pytest.approx(averagingtype) - - def test_validate_averagingtype_with_invalid_method(self): - method = 1 - averagingtype = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - averagingtype=averagingtype, - ) - - exp_msg = "AVERAGINGTYPE only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateRelativeSearchCellSize: - def test_validate_relativesearchcellsize_with_valid_method_6(self): - method = 6 - relativesearchcellsize = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - relativesearchcellsize=relativesearchcellsize, - ) - - assert forcing.relativesearchcellsize == pytest.approx( - relativesearchcellsize - ) - - def test_validate_relativesearchcellsize_with_invalid_method(self): - method = 1 - relativesearchcellsize = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - relativesearchcellsize=relativesearchcellsize, - ) - - exp_msg = "RELATIVESEARCHCELLSIZE only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateExtrapolTol: - def test_validate_extrapoltol_with_valid_method_5(self): - method = 5 - extrapoltol = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - extrapoltol=extrapoltol, - ) - - assert forcing.extrapoltol == pytest.approx(extrapoltol) - - def test_validate_extrapoltol_with_invalid_method(self): - method = 1 - extrapoltol = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - extrapoltol=extrapoltol, - ) - - exp_msg = "EXTRAPOLTOL only allowed when METHOD is 5" - assert exp_msg in str(error.value) - - class TestValidatePercentileMinMax: - def test_validate_percentileminmax_with_valid_method_6(self): - method = 6 - percentileminmax = 1.23 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - percentileminmax=percentileminmax, - ) - - assert forcing.percentileminmax == pytest.approx(percentileminmax) - - def test_validate_percentileminmax_with_invalid_method(self): - method = 1 - percentileminmax = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - percentileminmax=percentileminmax, - ) - - exp_msg = "PERCENTILEMINMAX only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateArea: - def test_validate_area_with_valid_quantity_discharge_salinity_temperature_sorsin( - self, - ): - quantity = ExtOldQuantity.DischargeSalinityTemperatureSorSin - area = 1.23 - - forcing = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - area=area, - ) - - assert forcing.area == pytest.approx(area) - - def test_validate_area_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - area = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - area=area, - ) - - exp_msg = "AREA only allowed when QUANTITY is discharge_salinity_temperature_sorsin" - assert exp_msg in str(error.value) - - class TestValidateNumMin: - def test_validate_nummin_with_valid_method_6(self): - method = 6 - nummin = 123 - - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - nummin=nummin, - ) - - assert forcing.nummin == nummin - - def test_validate_nummin_with_invalid_method(self): - method = 1 - nummin = 123 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - nummin=nummin, - ) - - exp_msg = "NUMMIN only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestExtOldModel: def test_header(self): assert HEADER == EXP_HEADER From 7c92028fb0cf53db8a0d353afbbca94876cd801e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 12:29:51 +0100 Subject: [PATCH 158/193] reformat tests --- tests/dflowfm/extold/test_ext_forcing.py | 839 ++++++++++++----------- 1 file changed, 427 insertions(+), 412 deletions(-) diff --git a/tests/dflowfm/extold/test_ext_forcing.py b/tests/dflowfm/extold/test_ext_forcing.py index 99bce7d85..521868463 100644 --- a/tests/dflowfm/extold/test_ext_forcing.py +++ b/tests/dflowfm/extold/test_ext_forcing.py @@ -69,151 +69,170 @@ def test_initialize_with_unrecognized_file_initializes_diskonlyfilemodel( assert isinstance(forcing.filename, DiskOnlyFileModel) - class TestValidateQuantity: - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_string_equal_casing(self, quantity): - quantity_str = quantity.value - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_string_different_casing(self, quantity): - quantity_str = quantity.value.upper() - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity +class TestValidateQuantity: + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_string_equal_casing(self, quantity): + quantity_str = quantity.value + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity - @pytest.mark.parametrize("quantity", ExtOldQuantity) - def test_with_valid_quantity_enum(self, quantity): - forcing = ExtOldForcing( - quantity=quantity, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_string_different_casing(self, quantity): + quantity_str = quantity.value.upper() + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_tracerquantity_appended_with_tracer_name(self, quantity): - quantity_str = quantity + "Some_Tracer_Name" - forcing = ExtOldForcing( - quantity=quantity_str, filename="", filetype=9, method=1, operand="O" - ) - assert forcing.quantity == quantity_str + @pytest.mark.parametrize("quantity", ExtOldQuantity) + def test_with_valid_quantity_enum(self, quantity): + forcing = ExtOldForcing( + quantity=quantity, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_just_a_tracerquantity_raises_error(self, quantity): - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, filename="", filetype=9, method=1, operand="O" - ) + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_tracerquantity_appended_with_tracer_name(self, quantity): + quantity_str = quantity + "Some_Tracer_Name" + forcing = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, operand="O" + ) + assert forcing.quantity == quantity_str - exp_error = ( - f"QUANTITY '{quantity.value}' should be appended with a tracer name." - ) - assert exp_error in str(error.value) - - @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) - def test_with_tracerquantity_string_without_tracer_name_raises_error( - self, quantity - ): - quantity_str = quantity.value - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity_str, - filename="", - filetype=9, - method=1, - operand="O", - ) - - assert ( - f"QUANTITY '{quantity_str}' should be appended with a tracer name." - in str(error.value) + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_just_a_tracerquantity_raises_error(self, quantity): + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity, filename="", filetype=9, method=1, operand="O" ) - def test_with_invalid_quantity_string_raises_value_error( - self, - ): - quantity_str = "invalid" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity_str, - filename="", - filetype=9, - method=1, - operand="O", - ) - - supported_values_str = ", ".join(([x.value for x in ExtOldQuantity])) - assert ( - f"QUANTITY 'invalid' not supported. Supported values: {supported_values_str}" - in str(error.value) - ) + exp_error = ( + f"QUANTITY '{quantity.value}' should be appended with a tracer name." + ) + assert exp_error in str(error.value) - class TestValidateOperand: - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_string_equal_casing(self, operand): - operand_str = operand.value - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, + @pytest.mark.parametrize("quantity", ExtOldTracerQuantity) + def test_with_tracerquantity_string_without_tracer_name_raises_error( + self, quantity + ): + quantity_str = quantity.value + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, - operand=operand_str, + operand="O", ) - assert forcing.operand == operand - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_string_different_casing(self, operand): - operand_str = operand.value.lower() - forcing = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, + assert ( + f"QUANTITY '{quantity_str}' should be appended with a tracer name." + in str(error.value) + ) + + def test_with_invalid_quantity_string_raises_value_error( + self, + ): + quantity_str = "invalid" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( + quantity=quantity_str, filename="", filetype=9, method=1, - operand=operand_str, + operand="O", ) - assert forcing.operand == operand - @pytest.mark.parametrize("operand", Operand) - def test_with_valid_operand_enum(self, operand): - forcing = ExtOldForcing( + supported_values_str = ", ".join(([x.value for x in ExtOldQuantity])) + assert ( + f"QUANTITY 'invalid' not supported. Supported values: {supported_values_str}" + in str(error.value) + ) + + +class TestValidateOperand: + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_string_equal_casing(self, operand): + operand_str = operand.value + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + assert forcing.operand == operand + + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_string_different_casing(self, operand): + operand_str = operand.value.lower() + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand_str, + ) + assert forcing.operand == operand + + @pytest.mark.parametrize("operand", Operand) + def test_with_valid_operand_enum(self, operand): + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=1, + operand=operand, + ) + assert forcing.operand == operand + + def test_with_invalid_operand_string_raises_value_error( + self, + ): + operand_str = "invalid" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, method=1, - operand=operand, - ) - assert forcing.operand == operand - - def test_with_invalid_operand_string_raises_value_error( - self, - ): - operand_str = "invalid" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=1, - operand=operand_str, - ) - - supported_values_str = ", ".join(([x.value for x in Operand])) - assert ( - f"OPERAND 'invalid' not supported. Supported values: {supported_values_str}" - in str(error.value) + operand=operand_str, ) - class TestValidateVarName: - def test_validate_varname_with_valid_filetype_11(self): - filetype = 11 - varname = "some_varname" + supported_values_str = ", ".join(([x.value for x in Operand])) + assert ( + f"OPERAND 'invalid' not supported. Supported values: {supported_values_str}" + in str(error.value) + ) + + +class TestValidateVarName: + def test_validate_varname_with_valid_filetype_11(self): + filetype = 11 + varname = "some_varname" - forcing = ExtOldForcing( + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + varname=varname, + filetype=filetype, + method=1, + operand="O", + ) + + assert forcing.varname == varname + + def test_validate_varname_with_invalid_filetype(self): + filetype = 9 + varname = "some_varname" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", varname=varname, @@ -222,31 +241,32 @@ def test_validate_varname_with_valid_filetype_11(self): operand="O", ) - assert forcing.varname == varname + exp_msg = "VARNAME only allowed when FILETYPE is 11" + assert exp_msg in str(error.value) - def test_validate_varname_with_invalid_filetype(self): - filetype = 9 - varname = "some_varname" - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - varname=varname, - filetype=filetype, - method=1, - operand="O", - ) +class TestValidateSourceMask: + @pytest.mark.parametrize("filetype", [4, 6]) + def test_validate_sourcemask_with_valid_filetype_4_or_6(self, filetype): + sourcemask = "sourcemask.file" - exp_msg = "VARNAME only allowed when FILETYPE is 11" - assert exp_msg in str(error.value) + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + sourcemask=sourcemask, + filetype=filetype, + method=1, + operand="O", + ) - class TestValidateSourceMask: - @pytest.mark.parametrize("filetype", [4, 6]) - def test_validate_sourcemask_with_valid_filetype_4_or_6(self, filetype): - sourcemask = "sourcemask.file" + assert forcing.sourcemask.filepath.name == sourcemask - forcing = ExtOldForcing( + def test_validate_sourcemask_with_invalid_filetype(self): + filetype = 9 + sourcemask = "sourcemask.file" + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", sourcemask=sourcemask, @@ -255,33 +275,36 @@ def test_validate_sourcemask_with_valid_filetype_4_or_6(self, filetype): operand="O", ) - assert forcing.sourcemask.filepath.name == sourcemask - - def test_validate_sourcemask_with_invalid_filetype(self): - filetype = 9 - sourcemask = "sourcemask.file" - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - sourcemask=sourcemask, - filetype=filetype, - method=1, - operand="O", - ) - - exp_msg = "SOURCEMASK only allowed when FILETYPE is 4 or 6" - assert exp_msg in str(error.value) - - class TestValidateExtrapolationMethod: - def test_validate_extrapolation_method_with_valid_method_3(self): - method = 3 - extrapolation_method = ( - ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox - ) + exp_msg = "SOURCEMASK only allowed when FILETYPE is 4 or 6" + assert exp_msg in str(error.value) + + +class TestValidateExtrapolationMethod: + def test_validate_extrapolation_method_with_valid_method_3(self): + method = 3 + extrapolation_method = ( + ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox + ) + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + extrapolation_method=extrapolation_method, + operand="O", + ) + + assert forcing.extrapolation_method == extrapolation_method - forcing = ExtOldForcing( + def test_validate_extrapolation_method_with_invalid_method(self): + method = 1 + extrapolation_method = ( + ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox + ) + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, @@ -290,35 +313,37 @@ def test_validate_extrapolation_method_with_valid_method_3(self): operand="O", ) - assert forcing.extrapolation_method == extrapolation_method + exp_msg = "EXTRAPOLATION_METHOD only allowed to be 1 when METHOD is 3" + assert exp_msg in str(error.value) - def test_validate_extrapolation_method_with_invalid_method(self): - method = 1 - extrapolation_method = ( - ExtOldExtrapolationMethod.SpatialExtrapolationOutsideOfSourceDataBoundingBox - ) - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - extrapolation_method=extrapolation_method, - operand="O", - ) - - exp_msg = "EXTRAPOLATION_METHOD only allowed to be 1 when METHOD is 3" - assert exp_msg in str(error.value) - - class TestValidateMaxSearchRadius: - def test_validate_maxsearchradius_method_with_valid_extrapolation_method_1( - self, - ): - extrapolation_method = 1 - maxsearchradius = 1.23 - - forcing = ExtOldForcing( +class TestValidateMaxSearchRadius: + def test_validate_maxsearchradius_method_with_valid_extrapolation_method_1( + self, + ): + extrapolation_method = 1 + maxsearchradius = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.AirPressureWindXWindY, + filename="", + filetype=3, + method=3, + extrapolation_method=extrapolation_method, + maxsearchradius=maxsearchradius, + operand="O", + ) + + assert forcing.extrapolation_method == extrapolation_method + + def test_validate_maxsearchradius_method_with_invalid_extrapolation_method( + self, + ): + extrapolation_method = 0 + maxsearchradius = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.AirPressureWindXWindY, filename="", filetype=3, @@ -328,34 +353,32 @@ def test_validate_maxsearchradius_method_with_valid_extrapolation_method_1( operand="O", ) - assert forcing.extrapolation_method == extrapolation_method - - def test_validate_maxsearchradius_method_with_invalid_extrapolation_method( - self, - ): - extrapolation_method = 0 - maxsearchradius = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.AirPressureWindXWindY, - filename="", - filetype=3, - method=3, - extrapolation_method=extrapolation_method, - maxsearchradius=maxsearchradius, - operand="O", - ) - - exp_msg = "MAXSEARCHRADIUS only allowed when EXTRAPOLATION_METHOD is 1" - assert exp_msg in str(error.value) - - class TestValidateValue: - def test_validate_value_with_valid_method_4(self): - method = 4 - value = 1.23 - - forcing = ExtOldForcing( + exp_msg = "MAXSEARCHRADIUS only allowed when EXTRAPOLATION_METHOD is 1" + assert exp_msg in str(error.value) + + +class TestValidateValue: + def test_validate_value_with_valid_method_4(self): + method = 4 + value = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + value=value, + ) + + assert forcing.value == pytest.approx(value) + + def test_validate_sourcemask_with_invalid_method(self): + method = 1 + value = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, @@ -364,31 +387,32 @@ def test_validate_value_with_valid_method_4(self): value=value, ) - assert forcing.value == pytest.approx(value) + exp_msg = "VALUE only allowed when METHOD is 4" + assert exp_msg in str(error.value) + - def test_validate_sourcemask_with_invalid_method(self): - method = 1 - value = 1.23 +class TestValidateFactor: + def test_validate_factor_with_valid_quantity_initialtracer(self): + quantity = ExtOldTracerQuantity.InitialTracer + "Some_Tracer_Name" + factor = 1.23 - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - value=value, - ) + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + factor=factor, + ) - exp_msg = "VALUE only allowed when METHOD is 4" - assert exp_msg in str(error.value) + assert forcing.factor == pytest.approx(factor) - class TestValidateFactor: - def test_validate_factor_with_valid_quantity_initialtracer(self): - quantity = ExtOldTracerQuantity.InitialTracer + "Some_Tracer_Name" - factor = 1.23 + def test_validate_factor_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + factor = 1.23 - forcing = ExtOldForcing( + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=quantity, filename="", filetype=9, @@ -397,31 +421,32 @@ def test_validate_factor_with_valid_quantity_initialtracer(self): factor=factor, ) - assert forcing.factor == pytest.approx(factor) + exp_msg = "FACTOR only allowed when QUANTITY starts with initialtracer" + assert exp_msg in str(error.value) - def test_validate_factor_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - factor = 1.23 - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - factor=factor, - ) +class TestValidateIFrcTyp: + def test_validate_ifrctyp_with_valid_quantity_frictioncoefficient(self): + quantity = ExtOldQuantity.FrictionCoefficient + ifrctyp = 1.23 - exp_msg = "FACTOR only allowed when QUANTITY starts with initialtracer" - assert exp_msg in str(error.value) + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + ifrctyp=ifrctyp, + ) - class TestValidateIFrcTyp: - def test_validate_ifrctyp_with_valid_quantity_frictioncoefficient(self): - quantity = ExtOldQuantity.FrictionCoefficient - ifrctyp = 1.23 + assert forcing.ifrctyp == pytest.approx(ifrctyp) - forcing = ExtOldForcing( + def test_validate_ifrctyp_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + ifrctyp = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=quantity, filename="", filetype=9, @@ -430,31 +455,32 @@ def test_validate_ifrctyp_with_valid_quantity_frictioncoefficient(self): ifrctyp=ifrctyp, ) - assert forcing.ifrctyp == pytest.approx(ifrctyp) + exp_msg = "IFRCTYP only allowed when QUANTITY is frictioncoefficient" + assert exp_msg in str(error.value) + - def test_validate_ifrctyp_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - ifrctyp = 1.23 +class TestValidateAveragingType: + def test_validate_averagingtype_with_valid_method_6(self): + method = 6 + averagingtype = 1.23 - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - ifrctyp=ifrctyp, - ) + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + averagingtype=averagingtype, + ) - exp_msg = "IFRCTYP only allowed when QUANTITY is frictioncoefficient" - assert exp_msg in str(error.value) + assert forcing.averagingtype == pytest.approx(averagingtype) - class TestValidateAveragingType: - def test_validate_averagingtype_with_valid_method_6(self): - method = 6 - averagingtype = 1.23 + def test_validate_averagingtype_with_invalid_method(self): + method = 1 + averagingtype = 1.23 - forcing = ExtOldForcing( + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, @@ -463,31 +489,32 @@ def test_validate_averagingtype_with_valid_method_6(self): averagingtype=averagingtype, ) - assert forcing.averagingtype == pytest.approx(averagingtype) + exp_msg = "AVERAGINGTYPE only allowed when METHOD is 6" + assert exp_msg in str(error.value) - def test_validate_averagingtype_with_invalid_method(self): - method = 1 - averagingtype = 1.23 - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - averagingtype=averagingtype, - ) +class TestValidateRelativeSearchCellSize: + def test_validate_relativesearchcellsize_with_valid_method_6(self): + method = 6 + relativesearchcellsize = 1.23 - exp_msg = "AVERAGINGTYPE only allowed when METHOD is 6" - assert exp_msg in str(error.value) + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + relativesearchcellsize=relativesearchcellsize, + ) + + assert forcing.relativesearchcellsize == pytest.approx(relativesearchcellsize) - class TestValidateRelativeSearchCellSize: - def test_validate_relativesearchcellsize_with_valid_method_6(self): - method = 6 - relativesearchcellsize = 1.23 + def test_validate_relativesearchcellsize_with_invalid_method(self): + method = 1 + relativesearchcellsize = 1.23 - forcing = ExtOldForcing( + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, @@ -496,33 +523,32 @@ def test_validate_relativesearchcellsize_with_valid_method_6(self): relativesearchcellsize=relativesearchcellsize, ) - assert forcing.relativesearchcellsize == pytest.approx( - relativesearchcellsize - ) + exp_msg = "RELATIVESEARCHCELLSIZE only allowed when METHOD is 6" + assert exp_msg in str(error.value) + - def test_validate_relativesearchcellsize_with_invalid_method(self): - method = 1 - relativesearchcellsize = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - relativesearchcellsize=relativesearchcellsize, - ) - - exp_msg = "RELATIVESEARCHCELLSIZE only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateExtrapolTol: - def test_validate_extrapoltol_with_valid_method_5(self): - method = 5 - extrapoltol = 1.23 - - forcing = ExtOldForcing( +class TestValidateExtrapolTol: + def test_validate_extrapoltol_with_valid_method_5(self): + method = 5 + extrapoltol = 1.23 + + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + extrapoltol=extrapoltol, + ) + + assert forcing.extrapoltol == pytest.approx(extrapoltol) + + def test_validate_extrapoltol_with_invalid_method(self): + method = 1 + extrapoltol = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, @@ -531,31 +557,32 @@ def test_validate_extrapoltol_with_valid_method_5(self): extrapoltol=extrapoltol, ) - assert forcing.extrapoltol == pytest.approx(extrapoltol) + exp_msg = "EXTRAPOLTOL only allowed when METHOD is 5" + assert exp_msg in str(error.value) + - def test_validate_extrapoltol_with_invalid_method(self): - method = 1 - extrapoltol = 1.23 +class TestValidatePercentileMinMax: + def test_validate_percentileminmax_with_valid_method_6(self): + method = 6 + percentileminmax = 1.23 - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - extrapoltol=extrapoltol, - ) + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + percentileminmax=percentileminmax, + ) - exp_msg = "EXTRAPOLTOL only allowed when METHOD is 5" - assert exp_msg in str(error.value) + assert forcing.percentileminmax == pytest.approx(percentileminmax) - class TestValidatePercentileMinMax: - def test_validate_percentileminmax_with_valid_method_6(self): - method = 6 - percentileminmax = 1.23 + def test_validate_percentileminmax_with_invalid_method(self): + method = 1 + percentileminmax = 1.23 - forcing = ExtOldForcing( + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, @@ -564,33 +591,34 @@ def test_validate_percentileminmax_with_valid_method_6(self): percentileminmax=percentileminmax, ) - assert forcing.percentileminmax == pytest.approx(percentileminmax) - - def test_validate_percentileminmax_with_invalid_method(self): - method = 1 - percentileminmax = 1.23 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - percentileminmax=percentileminmax, - ) - - exp_msg = "PERCENTILEMINMAX only allowed when METHOD is 6" - assert exp_msg in str(error.value) - - class TestValidateArea: - def test_validate_area_with_valid_quantity_discharge_salinity_temperature_sorsin( - self, - ): - quantity = ExtOldQuantity.DischargeSalinityTemperatureSorSin - area = 1.23 - - forcing = ExtOldForcing( + exp_msg = "PERCENTILEMINMAX only allowed when METHOD is 6" + assert exp_msg in str(error.value) + + +class TestValidateArea: + def test_validate_area_with_valid_quantity_discharge_salinity_temperature_sorsin( + self, + ): + quantity = ExtOldQuantity.DischargeSalinityTemperatureSorSin + area = 1.23 + + forcing = ExtOldForcing( + quantity=quantity, + filename="", + filetype=9, + method=1, + operand="O", + area=area, + ) + + assert forcing.area == pytest.approx(area) + + def test_validate_area_with_invalid_quantity(self): + quantity = ExtOldQuantity.WaterLevelBnd + area = 1.23 + + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=quantity, filename="", filetype=9, @@ -599,31 +627,34 @@ def test_validate_area_with_valid_quantity_discharge_salinity_temperature_sorsin area=area, ) - assert forcing.area == pytest.approx(area) + exp_msg = ( + "AREA only allowed when QUANTITY is discharge_salinity_temperature_sorsin" + ) + assert exp_msg in str(error.value) + - def test_validate_area_with_invalid_quantity(self): - quantity = ExtOldQuantity.WaterLevelBnd - area = 1.23 +class TestValidateNumMin: + def test_validate_nummin_with_valid_method_6(self): + method = 6 + nummin = 123 - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=quantity, - filename="", - filetype=9, - method=1, - operand="O", - area=area, - ) + forcing = ExtOldForcing( + quantity=ExtOldQuantity.WaterLevelBnd, + filename="", + filetype=9, + method=method, + operand="O", + nummin=nummin, + ) - exp_msg = "AREA only allowed when QUANTITY is discharge_salinity_temperature_sorsin" - assert exp_msg in str(error.value) + assert forcing.nummin == nummin - class TestValidateNumMin: - def test_validate_nummin_with_valid_method_6(self): - method = 6 - nummin = 123 + def test_validate_nummin_with_invalid_method(self): + method = 1 + nummin = 123 - forcing = ExtOldForcing( + with pytest.raises(ValueError) as error: + _ = ExtOldForcing( quantity=ExtOldQuantity.WaterLevelBnd, filename="", filetype=9, @@ -632,21 +663,5 @@ def test_validate_nummin_with_valid_method_6(self): nummin=nummin, ) - assert forcing.nummin == nummin - - def test_validate_nummin_with_invalid_method(self): - method = 1 - nummin = 123 - - with pytest.raises(ValueError) as error: - _ = ExtOldForcing( - quantity=ExtOldQuantity.WaterLevelBnd, - filename="", - filetype=9, - method=method, - operand="O", - nummin=nummin, - ) - - exp_msg = "NUMMIN only allowed when METHOD is 6" - assert exp_msg in str(error.value) + exp_msg = "NUMMIN only allowed when METHOD is 6" + assert exp_msg in str(error.value) From ebbf5890f05597ae764e3fe5d29308d708f0f513 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 12:43:43 +0100 Subject: [PATCH 159/193] add `quantities` property to the `ExtOldModel` --- hydrolib/core/dflowfm/extold/models.py | 5 +++++ tests/dflowfm/extold/test_extold.py | 2 ++ 2 files changed, 7 insertions(+) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 47c821a9c..22938c7d5 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -795,3 +795,8 @@ def _get_serializer( @classmethod def _get_parser(cls) -> Callable[[Path], Dict]: return Parser.parse + + @property + def quantities(self) -> List[str]: + """List all the quantities in the external forcings file.""" + return [forcing.quantity for forcing in self.forcing] diff --git a/tests/dflowfm/extold/test_extold.py b/tests/dflowfm/extold/test_extold.py index ef33b1ac9..021bdbd60 100644 --- a/tests/dflowfm/extold/test_extold.py +++ b/tests/dflowfm/extold/test_extold.py @@ -168,6 +168,8 @@ def test_load_model(self): exp_comments = [" This is a comment", " This is a comment", ""] assert model.comment == exp_comments + assert model.quantities == ["internaltidesfrictioncoefficient", "waterlevelbnd"] + # Assert correct forcings assert len(model.forcing) == 2 From f822a9b91fbd296787bef162bb692085d07e1c06 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 13:29:09 +0100 Subject: [PATCH 160/193] add `x` and `y` properties to the `PolyFile` class --- hydrolib/core/dflowfm/polyfile/models.py | 8 ++++++++ tests/dflowfm/polyfile/test_polyline_models.py | 10 ++++++++++ 2 files changed, 18 insertions(+) diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index c84cfc879..fa9582e24 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -133,3 +133,11 @@ def _get_parser(cls) -> Callable: from .parser import read_polyfile return read_polyfile + + @property + def x(self) -> List[float]: + return [point.x for obj in self.objects for point in obj.points] + + @property + def y(self) -> List[float]: + return [point.y for obj in self.objects for point in obj.points] diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index 4a8bb4d83..aaa85211b 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -26,6 +26,8 @@ def test_with_label(polylines_dir: Path): assert polyline.has_z_values is False assert polyline.filepath == path assert polyline.save_location == path.absolute() + assert polyline.x == [0, 0] + assert polyline.y == [0, 2] def test_without_z(polylines_dir: Path): @@ -44,6 +46,8 @@ def test_without_z(polylines_dir: Path): points = polyline.objects[0].points assert points[0] == Point(x=-80, y=-50, z=None, data=[]) assert points[1] == Point(x=-80, y=550, z=None, data=[]) + assert polyline.x == [-80, -80] + assert polyline.y == [-50, 550] def test_with_z_and_pli_extension_2by2(polylines_dir: Path): @@ -63,6 +67,8 @@ def test_with_z_and_pli_extension_2by2(polylines_dir: Path): points = polyline.objects[0].points assert points[0] == Point(x=0, y=0, z=None, data=[]) assert points[1] == Point(x=0, y=2, z=None, data=[]) + assert polyline.x == [0, 0] + assert polyline.y == [0, 2] class TestPLIZExtension: @@ -103,6 +109,8 @@ def test_with_z_and_pliz_extension_2by3(self, polylines_dir: Path): assert len(polyfile.objects[0].points) == 2 assert points[0] == Point(x=0, y=0, z=5, data=[]) assert points[1] == Point(x=0, y=2, z=5, data=[]) + assert polyfile.x == [0, 0] + assert polyfile.y == [0, 2] def test_with_z_and_pliz_extension_2by5(self, polylines_dir: Path): """ @@ -125,3 +133,5 @@ def test_with_z_and_pliz_extension_2by5(self, polylines_dir: Path): assert len(polyfile.objects[0].points) == 2 assert points[0] == Point(x=63.35, y=12.95, z=-4.2, data=[-5.35, 0]) assert points[1] == Point(x=45.2, y=6.35, z=-3, data=[-2.90, 0]) + assert polyfile.x == [63.35, 45.2] + assert polyfile.y == [12.95, 6.35] From f06fc1f247160213cd445ea024d62d597b7408fe Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 13:49:29 +0100 Subject: [PATCH 161/193] move the `get_z_sources_sinks` method from the `SourceSinkConverter` to the `PolyFile` class --- hydrolib/core/dflowfm/polyfile/models.py | 40 +++++++++++- hydrolib/tools/ext_old_to_new/converters.py | 60 +++--------------- .../dflowfm/polyfile/test_polyline_models.py | 62 +++++++++++++++++++ tests/tools/test_converters_source_sink.py | 60 ------------------ 4 files changed, 110 insertions(+), 112 deletions(-) diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index fa9582e24..66a5e04d6 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -1,7 +1,7 @@ """models.py defines all classes and functions related to representing pol/pli(z) files. """ -from typing import Callable, List, Optional, Sequence +from typing import Callable, List, Optional, Sequence, Tuple from pydantic.v1 import Field @@ -136,8 +136,46 @@ def _get_parser(cls) -> Callable: @property def x(self) -> List[float]: + """X-coordinates of all points in the PolyFile.""" return [point.x for obj in self.objects for point in obj.points] @property def y(self) -> List[float]: + """Y-coordinates of all points in the PolyFile.""" return [point.y for obj in self.objects for point in obj.points] + + def get_z_sources_sinks(self) -> Tuple[float, List[float]]: + """ + Get the z values of the source and sink points from the polyline file. + + Returns: + z_source, z_sinkA: Tuple[float, List[float]]: + If the polyline has data (more than 3 columns), then both the z_source and z_sink will be a list of two values. + Otherwise, the z_source and the z_sink will be a single value each. + + Examples: + in case the polyline has 3 columns: + >>> polyline = PolyFile("tests/data/input/source-sink/leftsor.pliz") + >>> z_source, z_sink = polyline.get_z_sources_sinks() + >>> print(z_source, z_sink) + [-3] [-4.2] + + in case the polyline has more than 3 columns: + >>> polyline = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") #Doctest: +SKIP + >>> z_source, z_sink = polyline.get_z_sources_sinks() + >>> print(z_source, z_sink) + [-3, -2.9] [-4.2, -5.35] + """ + has_data = True if self.objects[0].points[0].data else False + + z_source_sink = [] + for elem in [0, -1]: + point = self.objects[0].points[elem] + if has_data: + z_source_sink.append([point.z, point.data[0]]) + else: + z_source_sink.append([point.z]) + + z_sink = z_source_sink[0] + z_source = z_source_sink[1] + return z_source, z_sink diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 96043365f..29e9b7228 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,6 +1,6 @@ from abc import ABC, abstractmethod from pathlib import Path -from typing import Any, Dict, List, Tuple +from typing import Any, Dict, List from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel @@ -18,7 +18,6 @@ ExtOldParametersQuantity, ) from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField -from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.core.dflowfm.tim.models import TimModel from hydrolib.core.dflowfm.tim.parser import TimParser from hydrolib.tools.ext_old_to_new.utils import ( @@ -280,46 +279,6 @@ def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: return data - @staticmethod - def get_z_sources_sinks(polyline: PolyFile) -> Tuple[float, List[float]]: - """ - Get the z values of the source and sink points from the polyline file. - - Args: - polyline: The polyline object containing the source and sink points. - - Returns: - z_source, z_sinkA: Tuple[float, List[float]]: - If the polyline has data (more than 3 columns), then both the z_source and z_sink will be a list of two values. - Otherwise, the z_source and the z_sink will be a single value each. - - Examples: - in case the polyline has 3 columns: - >>> polyline = PolyFile("tests/data/input/source-sink/leftsor.pliz") - >>> z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyline) - >>> print(z_source, z_sink) - [-3] [-4.2] - - in case the polyline has more than 3 columns: - >>> polyline = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") #Doctest: +SKIP - >>> z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyline) - >>> print(z_source, z_sink) - [-3, -2.9] [-4.2, -5.35] - """ - has_data = True if polyline.objects[0].points[0].data else False - - z_source_sink = [] - for elem in [0, -1]: - point = polyline.objects[0].points[elem] - if has_data: - z_source_sink.append([point.z, point.data[0]]) - else: - z_source_sink.append([point.z]) - - z_sink = z_source_sink[0] - z_source = z_source_sink[1] - return z_source, z_sink - def parse_tim_model( self, tim_file: Path, ext_file_quantity_list: List[str] ) -> Dict[str, List[float]]: @@ -408,7 +367,7 @@ def parse_tim_model( def convert( self, forcing: ExtOldForcing, ext_file_quantity_list: List[str] = None - ) -> ParameterField: + ) -> SourceSink: """Convert an old external forcing block with Sources and sinks to a boundary forcing block suitable for inclusion in a new external forcings file. @@ -441,18 +400,17 @@ def convert( References: - `Sources and Sinks `_ - `Polyline ` - - `TIM file format `_ - - `Sources and Sinks `_ - - `Source and sink definitions `_ + - `TIM file format `_ + - `Sources and Sinks `_ + - `Source and sink definitions `_ """ location_file = forcing.filename.filepath - + polyline = forcing.filename # move this to a validator in the source and sink model - polyline = PolyFile(location_file) - x_coords = [point.x for point in polyline.objects[0].points] - y_coords = [point.y for point in polyline.objects[0].points] - z_source, z_sink = self.get_z_sources_sinks(polyline) + x_coords = polyline.x + y_coords = polyline.y + z_source, z_sink = polyline.get_z_sources_sinks() # check the tim file tim_file = forcing.filename.filepath.with_suffix(".tim") diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index aaa85211b..75e358f79 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -71,6 +71,68 @@ def test_with_z_and_pli_extension_2by2(polylines_dir: Path): assert polyline.y == [0, 2] +class TestGetZSourcesSinks: + def test_get_z_sources_sinks_single_value(self): + """ + The test case is based on the following assumptions: + - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. + ``` + zsink = -4.2 + zsource = -3 + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 + 45.20 6.35 -3.00 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor.pliz") + + z_source, z_sink = polyfile.get_z_sources_sinks() + assert z_source == [-3] + assert z_sink == [-4.2] + + def test_get_z_sources_sinks_multiple_values(self): + """ + The test case is based on the following assumptions: + - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the + third and forth columns' values, and if there is a fifth column it will be ignored. + ``` + zsink = [-4.2, -5.35] + zsource = [-3, -2.90] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 + ... + + ... + 45.20 6.35 -3.00 -2.90 + ``` + when there is a fifth column: + ``` + L1 + 2 3 + 63.35 12.95 -4.20 -5.35 0 + ... + + ... + 45.20 6.35 -3.00 -2.90 0 + ``` + """ + polyfile = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") + + z_source, z_sink = polyfile.get_z_sources_sinks() + assert z_source == [-3, -2.90] + assert z_sink == [-4.2, -5.35] + + class TestPLIZExtension: def test_with_z_and_pliz_extension_2by2(self, polylines_dir: Path): diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py index edf534fe6..afe8c3a71 100644 --- a/tests/tools/test_converters_source_sink.py +++ b/tests/tools/test_converters_source_sink.py @@ -95,66 +95,6 @@ def test_no_salinity_no_temperature(self): class TestSourceSinkConverter: - def test_get_z_sources_sinks_single_value(self): - """ - The test case is based on the following assumptions: - - The polyline has only 3 columns, so the zsink and zsource will have only one value which is in the third column. - ``` - zsink = -4.2 - zsource = -3 - ``` - - - The polyline file has the following structure: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 - 45.20 6.35 -3.00 - ``` - """ - polyfile = PolyFile("tests/data/input/source-sink/leftsor.pliz") - - z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) - assert z_source == [-3] - assert z_sink == [-4.2] - - def test_get_z_sources_sinks_multiple_values(self): - """ - The test case is based on the following assumptions: - - The polyline has only four or five columns, so the zsink and zsource will have two values which is in the - third and forth columns' values, and if there is a fifth column it will be ignored. - ``` - zsink = [-4.2, -5.35] - zsource = [-3, -2.90] - ``` - - - The polyline file has the following structure: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 -5.35 - ... - - ... - 45.20 6.35 -3.00 -2.90 - ``` - when there is a fifth column: - ``` - L1 - 2 3 - 63.35 12.95 -4.20 -5.35 0 - ... - - ... - 45.20 6.35 -3.00 -2.90 0 - ``` - """ - polyfile = PolyFile("tests/data/input/source-sink/leftsor-5-columns.pliz") - - z_source, z_sink = SourceSinkConverter().get_z_sources_sinks(polyfile) - assert z_source == [-3, -2.90] - assert z_sink == [-4.2, -5.35] - def test_default(self): """ The test case is based on the following assumptions: From 12663a738f4edd60b9eaf4219de8936af125f532 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 13:51:11 +0100 Subject: [PATCH 162/193] remove the `discharge_salinity_temperature_sorsin` from the old meteo quantities --- hydrolib/core/dflowfm/extold/models.py | 2 -- 1 file changed, 2 deletions(-) diff --git a/hydrolib/core/dflowfm/extold/models.py b/hydrolib/core/dflowfm/extold/models.py index 22938c7d5..6ccd00a7a 100644 --- a/hydrolib/core/dflowfm/extold/models.py +++ b/hydrolib/core/dflowfm/extold/models.py @@ -210,8 +210,6 @@ class ExtOldMeteoQuantity(StrEnum): """Long wave radiation""" SolarRadiation = "solarradiation" """Solar radiation""" - DischargeSalinityTemperatureSorSin = "discharge_salinity_temperature_sorsin" - """Discharge, salinity temperature source-sinks""" NudgeSalinityTemperature = "nudge_salinity_temperature" """Nudging salinity and temperature""" AirPressure = "airpressure" From 314c8a142af4be61624271ed1d541cad4f5ae13a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 21:14:37 +0100 Subject: [PATCH 163/193] add `root_dir` as a property to the `SourceSinkConverter` --- hydrolib/tools/ext_old_to_new/converters.py | 25 +++++++++++++++------ tests/tools/test_converters_source_sink.py | 25 +++++++++++---------- 2 files changed, 31 insertions(+), 19 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 29e9b7228..21528861b 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -1,6 +1,6 @@ from abc import ABC, abstractmethod from pathlib import Path -from typing import Any, Dict, List +from typing import Any, Dict, List, Union from hydrolib.core.basemodel import DiskOnlyFileModel from hydrolib.core.dflowfm.bc.models import ForcingModel @@ -16,6 +16,7 @@ ExtOldInitialConditionQuantity, ExtOldMeteoQuantity, ExtOldParametersQuantity, + ExtOldSourcesSinks, ) from hydrolib.core.dflowfm.inifield.models import InitialField, ParameterField from hydrolib.core.dflowfm.tim.models import TimModel @@ -365,6 +366,16 @@ def parse_tim_model( } return time_series + @property + def root_dir(self) -> Path: + return self._root_dir + + @root_dir.setter + def root_dir(self, value: Union[Path, str]): + if isinstance(value, str): + value = Path(value) + self._root_dir = value + def convert( self, forcing: ExtOldForcing, ext_file_quantity_list: List[str] = None ) -> SourceSink: @@ -408,12 +419,10 @@ def convert( location_file = forcing.filename.filepath polyline = forcing.filename # move this to a validator in the source and sink model - x_coords = polyline.x - y_coords = polyline.y z_source, z_sink = polyline.get_z_sources_sinks() # check the tim file - tim_file = forcing.filename.filepath.with_suffix(".tim") + tim_file = self.root_dir / polyline.filepath.with_suffix(".tim").name if not tim_file.exists(): raise ValueError( f"TIM file '{tim_file}' not found for QUANTITY={forcing.quantity}" @@ -425,9 +434,9 @@ def convert( "id": "L1", "name": forcing.quantity, "locationfile": location_file, - "numcoordinates": len(x_coords), - "xcoordinates": x_coords, - "ycoordinates": y_coords, + "numcoordinates": len(polyline.x), + "xcoordinates": polyline.x, + "ycoordinates": polyline.y, "zsource": z_source, "zsink": z_sink, } @@ -469,6 +478,8 @@ def create_converter(quantity) -> BaseConverter: return BoundaryConditionConverter() elif ConverterFactory.contains(ExtOldParametersQuantity, quantity): return ParametersConverter() + elif ConverterFactory.contains(ExtOldSourcesSinks, quantity): + return SourceSinkConverter() else: raise ValueError(f"No converter available for QUANTITY={quantity}.") diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py index afe8c3a71..bdb32aa4b 100644 --- a/tests/tools/test_converters_source_sink.py +++ b/tests/tools/test_converters_source_sink.py @@ -167,10 +167,9 @@ def test_default(self): "temperature", "initialtracer_anyname", ] - - new_quantity_block = SourceSinkConverter().convert( - forcing, ext_file_other_quantities - ) + converter = SourceSinkConverter() + converter.root_dir = "tests/data/input/source-sink" + new_quantity_block = converter.convert(forcing, ext_file_other_quantities) assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] @@ -225,11 +224,11 @@ def test_4_5_columns_polyline(self): "temperature", "initialtracer_anyname", ] - tim_file = Path("tests/data/input/source-sink/leftsor.tim") + converter = SourceSinkConverter() + converter.root_dir = "tests/data/input/source-sink" + tim_file = Path("leftsor.tim") with patch("pathlib.Path.with_suffix", return_value=tim_file): - new_quantity_block = SourceSinkConverter().convert( - forcing, ext_file_other_quantities - ) + new_quantity_block = converter.convert(forcing, ext_file_other_quantities) assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] @@ -267,11 +266,13 @@ def test_no_temperature_no_salinity(self): ext_file_other_quantities = [ "initialtracer_anyname", ] - tim_file = Path("tests/data/input/source-sink/no_temperature_no_salinity.tim") + + converter = SourceSinkConverter() + converter.root_dir = "tests/data/input/source-sink" + + tim_file = Path("no_temperature_no_salinity.tim") with patch("pathlib.Path.with_suffix", return_value=tim_file): - new_quantity_block = SourceSinkConverter().convert( - forcing, ext_file_other_quantities - ) + new_quantity_block = converter.convert(forcing, ext_file_other_quantities) assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] assert new_quantity_block.zsink == [-4.2] From 6253b9b2782cc1e7dbb110fc81c7a00122070b3e Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 21:47:11 +0100 Subject: [PATCH 164/193] add `source_sink` to the attributes of the `ExtModel` as a list of `SourceSink` models --- hydrolib/core/dflowfm/ext/models.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 6ae32aace..71756442c 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -386,7 +386,7 @@ def is_intermediate_link(self) -> bool: class ExtGeneral(INIGeneral): - """The external forcing file's `[General]` section with file meta data.""" + """The external forcing file's `[General]` section with file meta-data.""" _header: Literal["General"] = "General" fileversion: str = Field("2.01", alias="fileVersion") @@ -403,12 +403,14 @@ class ExtModel(INIModel): general (ExtGeneral): `[General]` block with file metadata. boundary (List[Boundary]): List of `[Boundary]` blocks for all boundary conditions. lateral (List[Lateral]): List of `[Lateral]` blocks for all lateral discharges. + source_sink (List[SourceSink]): List of `[SourceSink]` blocks for all source/sink terms. meteo (List[Meteo]): List of `[Meteo]` blocks for all meteorological forcings. """ general: ExtGeneral = ExtGeneral() boundary: List[Boundary] = Field(default_factory=list) lateral: List[Lateral] = Field(default_factory=list) + source_sink: List[SourceSink] = Field(default_factory=list) meteo: List[Meteo] = Field(default_factory=list) serializer_config: INISerializerConfig = INISerializerConfig( section_indent=0, property_indent=0 From 2128eeee9a54f8b82ff3301429ffd68529c0e856 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 21:51:48 +0100 Subject: [PATCH 165/193] add `SourceSinkConverter` and default test case --- tests/data/input/source-sink/source-sink.ext | 82 +++++++++++++++++++ .../data/input/source-sink/tim-3-columns.tim | 5 ++ 2 files changed, 87 insertions(+) create mode 100644 tests/data/input/source-sink/source-sink.ext create mode 100644 tests/data/input/source-sink/tim-3-columns.tim diff --git a/tests/data/input/source-sink/source-sink.ext b/tests/data/input/source-sink/source-sink.ext new file mode 100644 index 000000000..9d2df1d9f --- /dev/null +++ b/tests/data/input/source-sink/source-sink.ext @@ -0,0 +1,82 @@ +* QUANTITY : waterlevelbnd, velocitybnd, dischargebnd, tangentialvelocitybnd, normalvelocitybnd filetype=9 method=2,3 +* : outflowbnd, neumannbnd, qhbnd filetype=9 method=2,3 +* : salinitybnd filetype=9 method=2,3 +* : gateloweredgelevel, damlevel, pump filetype=9 method=2,3 +* : frictioncoefficient, horizontaleddyviscositycoefficient, advectiontype, ibotlevtype filetype=4,7,10 method=4 +* : initialwaterlevel filetype=4,7,10,12 method=4,5 +* : initialtemperature filetype=4,7,10,12 method=4,5 +* : initialsalinity, initialsalinitytop: use initialsalinity for depth-uniform, or +* : as bed level value in combination with initialsalinitytop filetype=4,7,10 method=4 +* : initialverticaltemperatureprofile filetype=9,10 method= +* : initialverticalsalinityprofile filetype=9,10 method= +* : windx, windy, windxy, rainfall_mmperday, atmosphericpressure filetype=1,2,4,7,8 method=1,2,3 +* : shiptxy, movingstationtxy filetype=1 method=1 +* +* kx = Vectormax = Nr of variables specified on the same time/space frame. Eg. Wind magnitude,direction: kx = 2 +* FILETYPE=1 : uniform kx = 1 value 1 dim array uni +* FILETYPE=2 : unimagdir kx = 2 values 1 dim array, uni mag/dir transf to u,v, in index 1,2 +* FILETYPE=3 : svwp kx = 3 fields u,v,p 3 dim array nointerpolation +* FILETYPE=4 : arcinfo kx = 1 field 2 dim array bilin/direct +* FILETYPE=5 : spiderweb kx = 3 fields 3 dim array bilin/spw +* FILETYPE=6 : curvi kx = ? bilin/findnm +* FILETYPE=7 : triangulation kx = 1 field 1 dim array triangulation +* FILETYPE=8 : triangulation_magdir kx = 2 fields consisting of Filetype=2 triangulation in (wind) stations +* +* FILETYPE=9 : polyline kx = 1 For polyline points i= 1 through N specify boundary signals, either as +* timeseries or Fourier components or tidal constituents +* Timeseries are in files *_000i.tim, two columns: time (min) values +* Fourier components and or tidal constituents are in files *_000i.cmp, three columns +* period (min) or constituent name (e.g. M2), amplitude and phase (deg) +* If no file is specified for a node, its value will be interpolated from surrounding nodes +* If only one signal file is specified, the boundary gets a uniform signal +* For a dischargebnd, only one signal file must be specified +* +* FILETYPE=10 : inside_polygon kx = 1 field uniform value inside polygon for INITIAL fields +* FILETYPE=11 : ncgrid currently not in use +* FILETYPE=12 : ncflow kx = 1 field 1 dim array triangulation +* +* METHOD =0 : provider just updates, another provider that pointers to this one does the actual interpolation +* =1 : intp space and time (getval) keep 2 meteofields in memory +* =2 : first intp space (update), next intp. time (getval) keep 2 flowfields in memory +* =3 : save weightfactors, intp space and time (getval), keep 2 pointer- and weight sets in memory. +* =4 : only spatial, inside polygon +* =5 : only spatial, triangulation +* =6 : only spatial, averaging +* =7 : only spatial, index triangulation +* =8 : only spatial, smoothing +* =9 : only spatial, internal diffusion +* =10 : only initial vertical profiles +* +* OPERAND =O : Override at all points +* =+ : Add to previously specified value +* =* : Multiply with previously specified value +* =A : Apply only if no value specified previously (For Initial fields, similar to Quickin preserving best data specified first) +* +* VALUE = : Offset value for this provider +* +* FACTOR = : Conversion factor for this provider +* +************************************************************************************************************** + +QUANTITY=initialtemperature +FILENAME=right.pol +FILETYPE=10 +METHOD=4 +OPERAND=O +VALUE=11. + + +QUANTITY=initialsalinity +FILENAME=right.pol +FILETYPE=10 +METHOD=4 +OPERAND=O +VALUE=11. + + +QUANTITY=discharge_salinity_temperature_sorsin +FILENAME=leftsor.pliz +FILETYPE=9 +METHOD=1 +OPERAND=O +AREA=1.0 diff --git a/tests/data/input/source-sink/tim-3-columns.tim b/tests/data/input/source-sink/tim-3-columns.tim new file mode 100644 index 000000000..d635cab84 --- /dev/null +++ b/tests/data/input/source-sink/tim-3-columns.tim @@ -0,0 +1,5 @@ +0.0 1.0 2.0 3.0 +100 1.0 2.0 3.0 +200 1.0 2.0 3.0 +300 1.0 2.0 3.0 +400 1.0 2.0 3.0 From 2e4ca9e53f08e16f6590e09638acb414bd6aa2d0 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Tue, 24 Dec 2024 21:53:01 +0100 Subject: [PATCH 166/193] add `SourceSinkConverter` and default test case --- .../tools/ext_old_to_new/main_converter.py | 46 +++++++++++++++---- tests/tools/test_main_converter.py | 24 +++++++++- 2 files changed, 61 insertions(+), 9 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 80e2e9766..7f2ac6ca9 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -6,7 +6,13 @@ from hydrolib.core import __version__ from hydrolib.core.basemodel import PathOrStr -from hydrolib.core.dflowfm.ext.models import Boundary, ExtModel, Lateral, Meteo +from hydrolib.core.dflowfm.ext.models import ( + Boundary, + ExtModel, + Lateral, + Meteo, + SourceSink, +) from hydrolib.core.dflowfm.extold.models import ExtOldModel from hydrolib.core.dflowfm.inifield.models import ( IniFieldModel, @@ -45,30 +51,37 @@ def __init__( ext_model_path (PathOrStr, optional): Path to the new external forcing file. inifield_model_path (PathOrStr, optional): Path to the initial field file. structure_model_path (PathOrStr, optional): Path to the structure file. + + Raises: + FileNotFoundError: If the old external forcing file does not exist. + + Examples: + >>> converter = ExternalForcingConverter("old-external-forcing.ext") + >>> converter.update() """ if isinstance(extold_model, Path) or isinstance(extold_model, str): extold_model = self._read_old_file(extold_model) self._extold_model = extold_model rdir = extold_model.filepath.parent - + self._root_dir = rdir # create the new models if not provided by the user in the same directory as the old external file path = ( - rdir.joinpath("new-external-forcing.ext") + rdir / "new-external-forcing.ext" if ext_model_path is None else ext_model_path ) self._ext_model = construct_filemodel_new_or_existing(ExtModel, path) path = ( - rdir.joinpath("new-initial-conditions.ext") + rdir / "new-initial-conditions.ext" if inifield_model_path is None else inifield_model_path ) self._inifield_model = construct_filemodel_new_or_existing(IniFieldModel, path) path = ( - rdir.joinpath("new-structure.ext") + rdir / "new-structure.ext" if structure_model_path is None else structure_model_path ) @@ -76,6 +89,11 @@ def __init__( StructureModel, path ) + @property + def root_dir(self) -> Path: + """Root directory of the external forcing file.""" + return self._root_dir + @property def extold_model(self) -> ExtOldModel: """old external forcing model.""" @@ -136,7 +154,11 @@ def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: extoldfile (PathOrStr): path to the external forcings file (.ext) Returns: - ExtOldModel: object with all forcing blocks.""" + ExtOldModel: object with all forcing blocks. + + Raises: + FileNotFoundError: If the old external forcing file does not exist. + """ global _verbose if not isinstance(extoldfile, Path): extoldfile = Path(extoldfile) @@ -156,7 +178,7 @@ def update( postfix: str = "", ) -> Union[Tuple[ExtModel, IniFieldModel, StructureModel], None]: """ - Convert old external forcing file to new format files. + Convert the old external forcing file to a new format files. When the output files are existing, output will be appended to them. Args: @@ -181,7 +203,13 @@ def update( for forcing in self.extold_model.forcing: try: converter_class = ConverterFactory.create_converter(forcing.quantity) - new_quantity_block = converter_class.convert(forcing) + # only the SourceSink converter needs the quantities' list + if converter_class.__class__.__name__ == "SourceSinkConverter": + quantities = self.extold_model.quantities + converter_class.root_dir = self.root_dir + new_quantity_block = converter_class.convert(forcing, quantities) + else: + new_quantity_block = converter_class.convert(forcing) except ValueError: # While this tool is in progress, accept that we do not convert all quantities yet. new_quantity_block = None @@ -190,6 +218,8 @@ def update( self.ext_model.boundary.append(new_quantity_block) elif isinstance(new_quantity_block, Lateral): self.ext_model.lateral.append(new_quantity_block) + elif isinstance(new_quantity_block, SourceSink): + self.ext_model.source_sink.append(new_quantity_block) elif isinstance(new_quantity_block, Meteo): self.ext_model.meteo.append(new_quantity_block) elif isinstance(new_quantity_block, InitialField): diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index b5cf0211e..19f186f3a 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,6 +1,6 @@ from pathlib import Path from typing import Dict, List -from unittest.mock import MagicMock +from unittest.mock import MagicMock, patch import pytest @@ -229,3 +229,25 @@ def test_boundary_only(self, old_forcing_file_boundary: Dict[str, str]): assert [ str(quantities[i].locationfile.filepath) for i in range(num_quantities) ] == old_forcing_file_boundary["locationfile"] + + def test_sources_sinks_only(self, old_forcing_file_boundary: Dict[str, str]): + """ """ + path = "tests/data/input/source-sink/source-sink.ext" + converter = ExternalForcingConverter(path) + + tim_file = Path("tim-3-columns.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + ext_model, inifield_model, structure_model = converter.update() + + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = 1 + assert len(ext_model.source_sink) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(ext_model.meteo) == 0 + assert len(structure_model.structure) == 0 + assert len(inifield_model.initial) == 2 + quantities = ext_model.source_sink + quantities[0].name = "discharge_salinity_temperature_sorsin" From 8ee1bf6bd0dafe8d739dfc7e2a4454beac338687 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 25 Dec 2024 18:22:46 +0100 Subject: [PATCH 167/193] reformat the `test_main_converter.py::TestUpdate` and create separate `TestUpdateSourcesSinks` --- tests/tools/test_main_converter.py | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 19f186f3a..b61490e9f 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -230,8 +230,19 @@ def test_boundary_only(self, old_forcing_file_boundary: Dict[str, str]): str(quantities[i].locationfile.filepath) for i in range(num_quantities) ] == old_forcing_file_boundary["locationfile"] + +class TestUpdateSourcesSinks: + def test_sources_sinks_only(self, old_forcing_file_boundary: Dict[str, str]): - """ """ + """ + The old external forcing file contains only 3 quantities `discharge_salinity_temperature_sorsin`, + `initialsalinity`, and `initialtemperature`. + + - polyline 2*3 file `leftsor.pliz` is used to read the source and sink points. + - tim file `tim-3-columns.tim` with 3 columns (plus the time column) the name should be the same as the + polyline but the `tim-3-columns.tim` is mocked in the test. + + """ path = "tests/data/input/source-sink/source-sink.ext" converter = ExternalForcingConverter(path) From e29c1d912f68b0da2fb31f3e56874350f17454f7 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 25 Dec 2024 18:29:09 +0100 Subject: [PATCH 168/193] rename test --- pyproject.toml | 2 +- tests/tools/test_main_converter.py | 21 +++++++++++++-------- 2 files changed, 14 insertions(+), 9 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index ba327908e..a87ecf33d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -123,7 +123,7 @@ addopts = """ --ignore=tests/rr/test_fnm.py --deselect=tests/test_model.py::test_dimr_mode_save --deselect=tests/test_model.py::test_dimr_model ---deselect=tests/tools/test_main_converter.py::TestExtOldToNew::test_wind_combi_uniform_curvi +--deselect=tests/tools/test_main_converter.py::TestExtOldToNewFromMDU::test_wind_combi_uniform_curvi """ [build-system] diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index b61490e9f..2939d8380 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -16,12 +16,13 @@ ) -class TestExtOldToNew: +class TestExtOldToNewFromMDU: def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = input_files_dir.joinpath( - "e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu" + mdu_filename = ( + input_files_dir / "e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu" ) + ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith( @@ -30,9 +31,11 @@ def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): def test_extrapolate_slr(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = input_files_dir.joinpath( - "e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu" + mdu_filename = ( + input_files_dir + / "e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu" ) + ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith( @@ -41,9 +44,11 @@ def test_extrapolate_slr(self, capsys, input_files_dir: Path): def test_basinsquares(self, capsys, input_files_dir: Path): main_converter._verbose = True - mdu_filename = input_files_dir.joinpath( - "e02/f006_external_forcing/c020_basinnofriction_squares/basinsquares.mdu" + mdu_filename = ( + input_files_dir + / "e02/f006_external_forcing/c020_basinnofriction_squares/basinsquares.mdu" ) + ext_old_to_new_from_mdu(mdu_filename) captured = capsys.readouterr() assert captured.out.startswith( @@ -52,7 +57,7 @@ def test_basinsquares(self, capsys, input_files_dir: Path): def test_recursive(self, capsys, input_files_dir: Path): main_converter._verbose = True - path = input_files_dir.joinpath("e02/f006_external_forcing") + path = input_files_dir / "e02/f006_external_forcing" ext_old_to_new_dir_recursive(path) From 845950fd97b3c5749688f01c13a0ed0b06b73aa2 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 25 Dec 2024 21:05:18 +0100 Subject: [PATCH 169/193] add an example --- hydrolib/tools/ext_old_to_new/utils.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index a3ff38325..9e82c6551 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -65,6 +65,9 @@ def construct_filepath_with_postfix(filepath: PathOrStr, postfix: str) -> Path: Returns: Path: The new filepath with the postfix included. + Examples: + >>> construct_filepath_with_postfix("file.txt", "_new") + Path("file_new.txt") """ file_as_path = Path(filepath) return file_as_path.with_stem(file_as_path.stem + postfix) From 17819dacc3432a1228235fb560dc6b96283cfd1c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 25 Dec 2024 22:11:31 +0100 Subject: [PATCH 170/193] add documentations --- hydrolib/tools/ext_old_to_new/converters.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 21528861b..f868c098c 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -288,6 +288,14 @@ def parse_tim_model( - Parse the TIM file and extract the time series data for each column. - assign the time series data to the corresponding quantity name. + The order of the quantities in the tim file should be as follows: + - time + - discharge + - temperaturedelta (optional) + - salinitydelta (optional) + - initialtracer-anyname (optional) + - any other quantities from the external forcings file. + Args: tim_file (Path): The path to the TIM file. ext_file_quantity_list (List[str]): A list of other quantities that are present in the external forcings file. From edaad5f480c40947ed5055affaaed72a410524e9 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 25 Dec 2024 22:19:40 +0100 Subject: [PATCH 171/193] use absolute imports --- tests/dflowfm/test_mdu.py | 39 +++++++++++++++++++-------------------- 1 file changed, 19 insertions(+), 20 deletions(-) diff --git a/tests/dflowfm/test_mdu.py b/tests/dflowfm/test_mdu.py index b8d8d2784..e5f830900 100644 --- a/tests/dflowfm/test_mdu.py +++ b/tests/dflowfm/test_mdu.py @@ -25,8 +25,7 @@ PolyObject, ) from hydrolib.core.dflowfm.xyn.models import XYNModel, XYNPoint - -from ..utils import ( +from tests.utils import ( assert_files_equal, assert_objects_equal, test_input_dir, @@ -396,12 +395,12 @@ def test_mdu_unknown_keyword_loading_throws_valueerror_for_unknown_keyword( ): tmp_mdu = """ [General] - fileVersion = 1.09 - fileType = modelDef - program = D-Flow FM - version = 1.2.100.66357 - autoStart = 0 - pathsRelativeToParent = 0 + fileVersion = 1.09 + fileType = modelDef + program = D-Flow FM + version = 1.2.100.66357 + autoStart = 0 + pathsRelativeToParent = 0 unknownkey = something """ @@ -425,12 +424,12 @@ def test_mdu_unknown_keywords_loading_throws_valueerror_for_unknown_keywords( ): tmp_mdu = """ [General] - fileVersion = 1.09 - fileType = modelDef - program = D-Flow FM - version = 1.2.100.66357 - autoStart = 0 - pathsRelativeToParent = 0 + fileVersion = 1.09 + fileType = modelDef + program = D-Flow FM + version = 1.2.100.66357 + autoStart = 0 + pathsRelativeToParent = 0 unknownkey = something unknownkey2 = something2 """ @@ -454,12 +453,12 @@ def test_mdu_unknown_keywords_loading_thrown_valueerror_for_unknown_keyword_does ): tmp_mdu = """ [General] - fileVersion = 1.09 - fileType = modelDef - program = D-Flow FM - version = 1.2.100.66357 - autoStart = 0 - pathsRelativeToParent = 0 + fileVersion = 1.09 + fileType = modelDef + program = D-Flow FM + version = 1.2.100.66357 + autoStart = 0 + pathsRelativeToParent = 0 unknownkey = something """ From 565656078d272b71b8a1742d9c272025c17bd39f Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 26 Dec 2024 00:32:59 +0100 Subject: [PATCH 172/193] change the backup function to keep the whole name with the extension and add the .bak --- hydrolib/tools/ext_old_to_new/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index 9e82c6551..a022eefe3 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -49,7 +49,7 @@ def backup_file(filepath: PathOrStr) -> None: """ filepath = Path(filepath) if isinstance(filepath, str) else filepath if filepath.is_file(): - backup_path = filepath.with_suffix(".bak") + backup_path = filepath.with_suffix(filepath.suffix + ".bak") filepath.replace(backup_path) From 348c8d93d21c2a2bdc103ff875d49da638a044c6 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 26 Dec 2024 00:35:11 +0100 Subject: [PATCH 173/193] clean --- tests/tools/test_tools_utils.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py index 8a23ccbd2..2e2b20e22 100644 --- a/tests/tools/test_tools_utils.py +++ b/tests/tools/test_tools_utils.py @@ -1,4 +1,3 @@ -import unittest from pathlib import Path import pytest From 7267c60c41adb6f3fefa7483cc878b97d486eb3c Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 26 Dec 2024 00:42:17 +0100 Subject: [PATCH 174/193] convert the `ext_old_to_new_from_mdu` function to a method `from_mdu` in the `ExternalForcingConverter` class --- hydrolib/tools/ext_old_to_new/__init__.py | 1 - .../tools/ext_old_to_new/main_converter.py | 255 ++++++++++-------- pyproject.toml | 3 +- tests/tools/test_main_converter.py | 34 +-- 4 files changed, 150 insertions(+), 143 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/__init__.py b/hydrolib/tools/ext_old_to_new/__init__.py index 9d561cd40..e69de29bb 100644 --- a/hydrolib/tools/ext_old_to_new/__init__.py +++ b/hydrolib/tools/ext_old_to_new/__init__.py @@ -1 +0,0 @@ -from .main_converter import ext_old_to_new_from_mdu diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 7f2ac6ca9..3b1c46900 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -2,7 +2,9 @@ import os import sys from pathlib import Path -from typing import Tuple, Union +from typing import Optional, Tuple, Union + +from tqdm import tqdm from hydrolib.core import __version__ from hydrolib.core.basemodel import PathOrStr @@ -25,7 +27,6 @@ from hydrolib.tools.ext_old_to_new.utils import ( backup_file, construct_filemodel_new_or_existing, - construct_filepath_with_postfix, ) _program: str = "ext_old_to_new" @@ -37,9 +38,10 @@ class ExternalForcingConverter: def __init__( self, extold_model: Union[PathOrStr, ExtOldModel], - ext_model_path: PathOrStr = None, - inifield_model_path: PathOrStr = None, - structure_model_path: PathOrStr = None, + ext_file: PathOrStr = None, + inifield_file: PathOrStr = None, + structure_file: PathOrStr = None, + fm_model: Optional[LegacyFMModel] = None, ): """Initialize the converter. @@ -48,9 +50,9 @@ def __init__( Args: extold_model (PathOrStr, ExtOldModel): ExtOldModel or path to the old external forcing file. - ext_model_path (PathOrStr, optional): Path to the new external forcing file. - inifield_model_path (PathOrStr, optional): Path to the initial field file. - structure_model_path (PathOrStr, optional): Path to the structure file. + ext_file (PathOrStr, optional): Path to the new external forcing file. + inifield_file (PathOrStr, optional): Path to the initial field file. + structure_file (PathOrStr, optional): Path to the structure file. Raises: FileNotFoundError: If the old external forcing file does not exist. @@ -66,29 +68,33 @@ def __init__( rdir = extold_model.filepath.parent self._root_dir = rdir # create the new models if not provided by the user in the same directory as the old external file - path = ( - rdir / "new-external-forcing.ext" - if ext_model_path is None - else ext_model_path - ) + path = rdir / "new-external-forcing.ext" if ext_file is None else ext_file self._ext_model = construct_filemodel_new_or_existing(ExtModel, path) path = ( rdir / "new-initial-conditions.ext" - if inifield_model_path is None - else inifield_model_path + if inifield_file is None + else inifield_file ) self._inifield_model = construct_filemodel_new_or_existing(IniFieldModel, path) - path = ( - rdir / "new-structure.ext" - if structure_model_path is None - else structure_model_path - ) + path = rdir / "new-structure.ext" if structure_file is None else structure_file self._structure_model = construct_filemodel_new_or_existing( StructureModel, path ) + if fm_model is not None: + self._fm_model = fm_model + + @property + def fm_model(self) -> LegacyFMModel: + """FMModel: object with all blocks.""" + if not hasattr(self, "_fm_model"): + model = None + else: + model = self._fm_model + return model + @property def root_dir(self) -> Path: """Root directory of the external forcing file.""" @@ -175,15 +181,11 @@ def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: def update( self, - postfix: str = "", ) -> Union[Tuple[ExtModel, IniFieldModel, StructureModel], None]: """ Convert the old external forcing file to a new format files. When the output files are existing, output will be appended to them. - Args: - postfix (str, optional): Append POSTFIX to the output filenames. Defaults to "". - Returns: Tuple[ExtOldModel, ExtModel, IniFieldModel, StructureModel]: The updated models (already written to disk). Maybe used @@ -234,6 +236,9 @@ def update( f"{self.extold_model.filepath}." ) + if self.fm_model is not None: + self._update_fm_model() + return self.ext_model, self.inifield_model, self.structure_model def save(self, backup: bool = True): @@ -252,111 +257,121 @@ def save(self, backup: bool = True): self.ext_model.save() self.inifield_model.save() self.structure_model.save() + if self.fm_model is not None: + backup_file(self.fm_model.filepath) + self.fm_model.save(recurse=False, exclude_unset=True) + + @classmethod + def from_mdu( + cls, + mdu_file: PathOrStr, + ext_file: Optional[PathOrStr] = "forcings.ext", + inifield_file: Optional[PathOrStr] = "inifields.ini", + structure_file: Optional[PathOrStr] = "structures.ini", + suppress_errors: Optional[bool] = False, + ) -> "ExternalForcingConverter": + """class method to create the converter from MDU file. + Args: + mdu_file (PathOrStr): Path to the D-Flow FM main input file (.mdu). + Must be parsable into a standard FMModel. + When this contains a valid filename for ExtFile, conversion + will be performed. + ext_file (PathOrStr, optional): Path to the output external forcings + file. Defaults to the given ExtForceFileNew in the MDU file, if + present, or forcings.ext otherwise. + inifield_file (PathOrStr, optional): Path to the output initial field + file. Defaults to the given IniFieldFile in the MDU file, if + present, or inifields.ini otherwise. + structure_file (PathOrStr, optional): Path to the output structures.ini + file. Defaults to the given StructureFile in the MDU file, if + present, or structures.ini otherwise. + suppress_errors: Optional[bool]: Whether to suppress errors during execution. -def ext_old_to_new_from_mdu( - mdufile: PathOrStr, - extfile: PathOrStr = "forcings.ext", - inifieldfile: PathOrStr = "inifields.ini", - structurefile: PathOrStr = "structures.ini", - backup: bool = True, - postfix: str = "_new", -): - """Wrapper converter function for converting legacy external forcings - files into cross section .ini files, for files listed in an MDU file. + Returns: + ExternalForcingConverter: The converter object. + """ + try: + fmmodel = LegacyFMModel(mdu_file, recurse=False) + root_dir = fmmodel._resolved_filepath.parent - Args: - mdufile (PathOrStr): Path to the D-Flow FM main input file (.mdu). - Must be parsable into a standard FMModel. - When this contains a valid filename for ExtFile, conversion - will be performed. - extfile (PathOrStr, optional): Path to the output external forcings - file. Defaults to the given ExtForceFileNew in the MDU file, if - present, or forcings.ext otherwise. - inifieldfile (PathOrStr, optional): Path to the output initial field - file. Defaults to the given IniFieldFile in the MDU file, if - present, or inifields.ini otherwise. - structurefile (PathOrStr, optional): Path to the output structures.ini - file. Defaults to the given StructureFile in the MDU file, if - present, or structures.ini otherwise. - backup (bool, optional): Create a backup of each file that will be - overwritten. Defaults to True. - postfix (str, optional): Append postfix to the output filenames - (before the file suffix). Defaults to "_new". - """ - global _verbose + extoldfile = root_dir / fmmodel.external_forcing.extforcefile.filepath - # For flexibility, also accept legacy MDU file versions (which does not - # affect external forcings functionality anyway): - try: - fmmodel = LegacyFMModel(mdufile, recurse=False) - except Exception as error: - print(f"Could not read {mdufile} as a valid FM model:", error) - return - - workdir = fmmodel._resolved_filepath.parent - os.chdir(workdir) - if fmmodel.external_forcing.extforcefile is None and _verbose: - print(f"mdufile: {mdufile} does not contain an old style external forcing file") - return - - extoldfile = fmmodel.external_forcing.extforcefile._resolved_filepath - - extfile = ( - fmmodel.external_forcing.extforcefilenew._resolved_filepath - if fmmodel.external_forcing.extforcefilenew - else workdir / extfile - ) - inifieldfile = ( - fmmodel.geometry.inifieldfile._resolved_filepath - if fmmodel.geometry.inifieldfile - else workdir / inifieldfile - ) - structurefile = ( - fmmodel.geometry.structurefile[0]._resolved_filepath - if fmmodel.geometry.structurefile - else workdir / structurefile - ) + ext_file = ( + fmmodel.external_forcing.extforcefilenew._resolved_filepath + if fmmodel.external_forcing.extforcefilenew + else root_dir / ext_file + ) + inifield_file = ( + fmmodel.geometry.inifieldfile._resolved_filepath + if fmmodel.geometry.inifieldfile + else root_dir / inifield_file + ) + structure_file = ( + fmmodel.geometry.structurefile[0]._resolved_filepath + if fmmodel.geometry.structurefile + else root_dir / structure_file + ) + return cls(extoldfile, ext_file, inifield_file, structure_file, fmmodel) - converter = ExternalForcingConverter( - extoldfile, extfile, inifieldfile, structurefile - ) + except Exception as error: + if suppress_errors: + print(f"Could not read {mdu_file} as a valid FM model:", error) + else: + raise error + + def _update_fm_model(self): + """Update the FM model with the new external forcings, initial fields and structures files. + + - The FM model will be saved with a postfix added to the filename. + - The original FM model will be backed up. + """ + if len(self.extold_model.forcing) > 0: + self.fm_model.external_forcing.extforcefile = self.extold_model - # The actual conversion: - ext_model, inifield_model, structure_model = converter.update(postfix) - converter.save(backup) - extold_model = converter.extold_model - try: - # And include the new files in the FM model: - _ = ExtModel(extfile) - if len(extold_model.forcing) > 0: - fmmodel.external_forcing.extforcefile = extold_model # Intentionally always include the new external forcings file, even if empty. - fmmodel.external_forcing.extforcefilenew = ext_model - if len(inifield_model.initial) > 0 or len(inifield_model.parameter) > 0: - fmmodel.geometry.inifieldfile = inifield_model - if len(structure_model.structure) > 0: - fmmodel.geometry.structurefile[0] = structure_model + self.fm_model.external_forcing.extforcefilenew = self.ext_model + if ( + len(self.inifield_model.initial) > 0 + or len(self.inifield_model.parameter) > 0 + ): + self.fm_model.geometry.inifieldfile = self.inifield_model + if len(self.structure_model.structure) > 0: + self.fm_model.geometry.structurefile[0] = self.structure_model - # Save the updated FM model: - if backup: - backup_file(fmmodel.filepath) - converted_mdufile = construct_filepath_with_postfix(mdufile, postfix) - fmmodel.filepath = converted_mdufile - fmmodel.save(recurse=False, exclude_unset=True) if _verbose: - print(f"succesfully saved converted file {mdufile} ") + print(f"succesfully saved converted file {self.fm_model.filepath} ") - except Exception as error: - print("The converter did not produce a valid ext file:", error) - return +def ext_old_to_new_dir_recursive( + root_dir: PathOrStr, backup: bool = True, suppress_errors: bool = False +): + """Migrate all external forcings files in a directory tree to the new format. -def ext_old_to_new_dir_recursive(dir: PathOrStr, backup: bool = True): + Args: + root_dir: Directory to recursively find and convert .mdu files in. + backup (bool, optional): Create a backup of each file that will be overwritten. + suppress_errors (bool, optional): Suppress errors during conversion. + """ + mdu_files = [ + path for path in Path(root_dir).rglob("*.mdu") if "_ext" not in path.name + ] - for path in Path(dir).rglob("*.mdu"): - if "_ext" not in path.name: - ext_old_to_new_from_mdu(path, backup) + if not mdu_files: + print("No .mdu files found in the specified directory.") + else: + print(f"Found {len(mdu_files)} .mdu files. Starting conversion...") + + for path in tqdm(mdu_files, desc="Converting files"): + try: + converter = ExternalForcingConverter.from_mdu( + path, suppress_errors=suppress_errors + ) + _, _, _ = converter.update() + converter.save(backup=backup) + except Exception as e: + if not suppress_errors: + print(f"Error processing {path}: {e}") def _get_parser() -> argparse.ArgumentParser: @@ -445,9 +460,11 @@ def main(args=None): outfiles["structurefile"] = args.outfiles[2] if args.mdufile is not None: - ext_old_to_new_from_mdu( - args.mdufile, **outfiles, backup=backup, postfix=args.postfix + converter = ExternalForcingConverter.from_mdu( + args.mdufile, **outfiles, suppress_errors=True ) + converter.update() + converter.save(backup=backup) elif args.extoldfile is not None: converter = ExternalForcingConverter( args.extoldfile, @@ -455,7 +472,7 @@ def main(args=None): outfiles["inifieldfile"], outfiles["structurefile"], ) - converter.update(postfix=args.postfix) + converter.update() converter.save(backup=backup) elif args.dir is not None: ext_old_to_new_dir_recursive(args.dir, backup=backup) diff --git a/pyproject.toml b/pyproject.toml index a87ecf33d..82a647e7a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,7 @@ pydantic = "^2.5" lxml = "^5.0" meshkernel = "^5.0.1" strenum = "^0" +tqdm = "^4.67.1" [tool.poetry.dev-dependencies] pytest = "^8.0" @@ -123,9 +124,7 @@ addopts = """ --ignore=tests/rr/test_fnm.py --deselect=tests/test_model.py::test_dimr_mode_save --deselect=tests/test_model.py::test_dimr_model ---deselect=tests/tools/test_main_converter.py::TestExtOldToNewFromMDU::test_wind_combi_uniform_curvi """ - [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 2939d8380..6775e9eb8 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -3,16 +3,17 @@ from unittest.mock import MagicMock, patch import pytest +from pydantic.v1.error_wrappers import ValidationError from hydrolib.core.dflowfm.ext.models import ExtModel from hydrolib.core.dflowfm.extold.models import ExtOldModel from hydrolib.core.dflowfm.inifield.models import IniFieldModel +from hydrolib.core.dflowfm.mdu.legacy import LegacyFMModel from hydrolib.core.dflowfm.structure.models import StructureModel from hydrolib.tools.ext_old_to_new import main_converter from hydrolib.tools.ext_old_to_new.main_converter import ( ExternalForcingConverter, ext_old_to_new_dir_recursive, - ext_old_to_new_from_mdu, ) @@ -22,12 +23,12 @@ def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): mdu_filename = ( input_files_dir / "e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu" ) - - ext_old_to_new_from_mdu(mdu_filename) - captured = capsys.readouterr() - assert captured.out.startswith( - f"Could not read {mdu_filename} as a valid FM model:" - ) + converter = ExternalForcingConverter.from_mdu(mdu_filename) + _, _, _ = converter.update() + fm_model = converter.fm_model + assert isinstance(fm_model, LegacyFMModel) + assert len(converter.extold_model.forcing) == 5 + assert isinstance(fm_model.external_forcing.extforcefilenew, ExtModel) def test_extrapolate_slr(self, capsys, input_files_dir: Path): main_converter._verbose = True @@ -36,20 +37,11 @@ def test_extrapolate_slr(self, capsys, input_files_dir: Path): / "e02/f006_external_forcing/c011_extrapolate_slr/slrextrapol.mdu" ) - ext_old_to_new_from_mdu(mdu_filename) - captured = capsys.readouterr() - assert captured.out.startswith( - f"Could not read {mdu_filename} as a valid FM model:" - ) - - def test_basinsquares(self, capsys, input_files_dir: Path): - main_converter._verbose = True - mdu_filename = ( - input_files_dir - / "e02/f006_external_forcing/c020_basinnofriction_squares/basinsquares.mdu" - ) + # test with error + with pytest.raises(ValidationError): + ExternalForcingConverter.from_mdu(mdu_filename) - ext_old_to_new_from_mdu(mdu_filename) + ExternalForcingConverter.from_mdu(mdu_filename, suppress_errors=True) captured = capsys.readouterr() assert captured.out.startswith( f"Could not read {mdu_filename} as a valid FM model:" @@ -58,7 +50,7 @@ def test_basinsquares(self, capsys, input_files_dir: Path): def test_recursive(self, capsys, input_files_dir: Path): main_converter._verbose = True path = input_files_dir / "e02/f006_external_forcing" - ext_old_to_new_dir_recursive(path) + ext_old_to_new_dir_recursive(path, suppress_errors=True) class TestExternalFocingConverter: From c9465d98963b1b32eb865d56215b1313f45f3bb0 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 26 Dec 2024 01:02:41 +0100 Subject: [PATCH 175/193] add a `verbose` property the `ExternalForcingConverter` class --- .../tools/ext_old_to_new/main_converter.py | 39 ++++++++++--------- tests/tools/test_main_converter.py | 8 ---- 2 files changed, 20 insertions(+), 27 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 3b1c46900..684998407 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -29,19 +29,17 @@ construct_filemodel_new_or_existing, ) -_program: str = "ext_old_to_new" -_verbose: bool = False - class ExternalForcingConverter: def __init__( self, extold_model: Union[PathOrStr, ExtOldModel], - ext_file: PathOrStr = None, - inifield_file: PathOrStr = None, - structure_file: PathOrStr = None, + ext_file: Optional[PathOrStr] = None, + inifield_file: Optional[PathOrStr] = None, + structure_file: Optional[PathOrStr] = None, fm_model: Optional[LegacyFMModel] = None, + verbose: bool = False, ): """Initialize the converter. @@ -53,6 +51,7 @@ def __init__( ext_file (PathOrStr, optional): Path to the new external forcing file. inifield_file (PathOrStr, optional): Path to the initial field file. structure_file (PathOrStr, optional): Path to the structure file. + verbose (bool, optional): Enable verbose output. Defaults to False. Raises: FileNotFoundError: If the old external forcing file does not exist. @@ -65,8 +64,10 @@ def __init__( extold_model = self._read_old_file(extold_model) self._extold_model = extold_model + self._verbose = verbose rdir = extold_model.filepath.parent self._root_dir = rdir + # create the new models if not provided by the user in the same directory as the old external file path = rdir / "new-external-forcing.ext" if ext_file is None else ext_file self._ext_model = construct_filemodel_new_or_existing(ExtModel, path) @@ -86,6 +87,15 @@ def __init__( if fm_model is not None: self._fm_model = fm_model + @property + def verbose(self) -> bool: + """bool: Enable verbose output.""" + return self._verbose + + @verbose.setter + def verbose(self, value: bool): + self._verbose = value + @property def fm_model(self) -> LegacyFMModel: """FMModel: object with all blocks.""" @@ -165,7 +175,6 @@ def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: Raises: FileNotFoundError: If the old external forcing file does not exist. """ - global _verbose if not isinstance(extoldfile, Path): extoldfile = Path(extoldfile) @@ -174,9 +183,6 @@ def _read_old_file(extoldfile: PathOrStr) -> ExtOldModel: extold_model = ExtOldModel(extoldfile) - if _verbose: - print(f"Read {len(extold_model.forcing)} forcing blocks from {extoldfile}.") - return extold_model def update( @@ -191,7 +197,7 @@ def update( The updated models (already written to disk). Maybe used at call site to inspect the updated models. """ - if _verbose: + if self.verbose: workdir = os.getcwd() + "\\" print(f"Work dir: {workdir}") print("Using attribute files:") @@ -339,7 +345,7 @@ def _update_fm_model(self): if len(self.structure_model.structure) > 0: self.fm_model.geometry.structurefile[0] = self.structure_model - if _verbose: + if self.verbose: print(f"succesfully saved converted file {self.fm_model.filepath} ") @@ -376,7 +382,7 @@ def ext_old_to_new_dir_recursive( def _get_parser() -> argparse.ArgumentParser: parser = argparse.ArgumentParser( - prog=_program, + prog="ext_old_to_new", description="Convert D-Flow FM legacy external forcings files to current external forcings file/initial fields file/structures file.", ) @@ -440,12 +446,8 @@ def main(args=None): A of arguments as if they were input in the command line. Leave it None to use sys.argv. """ - global _verbose - parser = _get_parser() args = parser.parse_args(args) - _verbose = args.verbose - backup = args.backup is not None if args.mdufile is not None and args.extoldfile is not None: @@ -463,6 +465,7 @@ def main(args=None): converter = ExternalForcingConverter.from_mdu( args.mdufile, **outfiles, suppress_errors=True ) + converter.verbose = args.verbose converter.update() converter.save(backup=backup) elif args.extoldfile is not None: @@ -479,8 +482,6 @@ def main(args=None): else: print("Error: no input specified. Use one of --mdufile, --extoldfile or --dir.") - print(_program + ": done") - if __name__ == "__main__": main() diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 6775e9eb8..6d3e0f0ad 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -147,14 +147,6 @@ def test_read_old_file( assert len(converter.extold_model.comment) == old_forcing_comment_len quantities = [forcing.quantity for forcing in converter.extold_model.forcing] assert all([quantity in old_forcing_file_quantities for quantity in quantities]) - # test verbose - main_converter._verbose = True - ExternalForcingConverter._read_old_file(old_forcing_file) - captured = capsys.readouterr() - - assert captured.out.startswith( - f"Read {(len(old_forcing_file_quantities))} forcing blocks from {old_forcing_file}." - ) class TestUpdate: From c296fa39aaee0f123652e3af5c2d2e4985cd81ce Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 26 Dec 2024 01:08:44 +0100 Subject: [PATCH 176/193] move logging to separate method --- .../tools/ext_old_to_new/main_converter.py | 24 +++++++++++-------- 1 file changed, 14 insertions(+), 10 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 684998407..23ab094a3 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -197,16 +197,7 @@ def update( The updated models (already written to disk). Maybe used at call site to inspect the updated models. """ - if self.verbose: - workdir = os.getcwd() + "\\" - print(f"Work dir: {workdir}") - print("Using attribute files:") - print("Input:") - print(f"* {self.extold_model.filepath}") - print("Output:") - print(f"* {self.ext_model.filepath}") - print(f"* {self.inifield_model.filepath}") - print(f"* {self.structure_model.filepath}") + self._log_conversion_details() for forcing in self.extold_model.forcing: try: @@ -348,6 +339,19 @@ def _update_fm_model(self): if self.verbose: print(f"succesfully saved converted file {self.fm_model.filepath} ") + def _log_conversion_details(self): + """Log details about the conversion process if verbosity is enabled.""" + if self.verbose: + workdir = os.getcwd() + "\\" + print(f"Work dir: {workdir}") + print("Using attribute files:") + print("Input:") + print(f"* {self.extold_model.filepath}") + print("Output:") + print(f"* {self.ext_model.filepath}") + print(f"* {self.inifield_model.filepath}") + print(f"* {self.structure_model.filepath}") + def ext_old_to_new_dir_recursive( root_dir: PathOrStr, backup: bool = True, suppress_errors: bool = False From eea08a151a608b39184afb1a801020485b2fc15a Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Thu, 26 Dec 2024 01:17:34 +0100 Subject: [PATCH 177/193] refactor the `update` method --- .../tools/ext_old_to_new/main_converter.py | 33 ++++++++++++------- 1 file changed, 21 insertions(+), 12 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 23ab094a3..2bcb12fa0 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -200,18 +200,8 @@ def update( self._log_conversion_details() for forcing in self.extold_model.forcing: - try: - converter_class = ConverterFactory.create_converter(forcing.quantity) - # only the SourceSink converter needs the quantities' list - if converter_class.__class__.__name__ == "SourceSinkConverter": - quantities = self.extold_model.quantities - converter_class.root_dir = self.root_dir - new_quantity_block = converter_class.convert(forcing, quantities) - else: - new_quantity_block = converter_class.convert(forcing) - except ValueError: - # While this tool is in progress, accept that we do not convert all quantities yet. - new_quantity_block = None + + new_quantity_block = self._convert_forcing(forcing) if isinstance(new_quantity_block, Boundary): self.ext_model.boundary.append(new_quantity_block) @@ -238,6 +228,25 @@ def update( return self.ext_model, self.inifield_model, self.structure_model + def _convert_forcing(self, forcing) -> Union[Boundary, Lateral, Meteo, SourceSink]: + """Convert a single forcing block to the appropriate new format.""" + + try: + converter_class = ConverterFactory.create_converter(forcing.quantity) + + # only the SourceSink converter needs the quantities' list + if converter_class.__class__.__name__ == "SourceSinkConverter": + quantities = self.extold_model.quantities + converter_class.root_dir = self.root_dir + new_quantity_block = converter_class.convert(forcing, quantities) + else: + new_quantity_block = converter_class.convert(forcing) + except ValueError: + # While this tool is in progress, accept that we do not convert all quantities yet. + new_quantity_block = None + + return new_quantity_block + def save(self, backup: bool = True): """Save the updated models to disk. From bfe81f6d15e3965809e7edbec18380a60bef09a6 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Mon, 6 Jan 2025 21:06:14 +0100 Subject: [PATCH 178/193] add lines to parse the temperature and salinity in the mdu file --- hydrolib/tools/ext_old_to_new/converters.py | 19 ++++++--- .../tools/ext_old_to_new/main_converter.py | 33 ++++++++++----- tests/tools/test_main_converter.py | 40 ++++++++++++++++++- 3 files changed, 73 insertions(+), 19 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index f868c098c..b35858f6b 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -281,7 +281,7 @@ def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: return data def parse_tim_model( - self, tim_file: Path, ext_file_quantity_list: List[str] + self, tim_file: Path, ext_file_quantity_list: List[str], **kwargs ) -> Dict[str, List[float]]: """Parse the source and sinks related time series from the tim file. @@ -352,15 +352,17 @@ def parse_tim_model( ] # check if the temperature and salinity are present in the external file - temp_salinity_dict = find_temperature_salinity_in_quantities( + temp_salinity_from_ext = find_temperature_salinity_in_quantities( ext_file_quantity_list ) ext_file_quantity_list = ( ["discharge"] - + list(temp_salinity_dict.keys()) + + list(temp_salinity_from_ext.keys()) + required_quantities_from_ext ) + # here process the temperature and salinity coming from the mdu (in the kwargs) with the + print(kwargs) if len(time_series) != len(ext_file_quantity_list): raise ValueError( @@ -385,7 +387,10 @@ def root_dir(self, value: Union[Path, str]): self._root_dir = value def convert( - self, forcing: ExtOldForcing, ext_file_quantity_list: List[str] = None + self, + forcing: ExtOldForcing, + ext_file_quantity_list: List[str] = None, + **temp_salinity_mdu, ) -> SourceSink: """Convert an old external forcing block with Sources and sinks to a boundary forcing block suitable for inclusion in a new external forcings file. @@ -426,7 +431,7 @@ def convert( """ location_file = forcing.filename.filepath polyline = forcing.filename - # move this to a validator in the source and sink model + z_source, z_sink = polyline.get_z_sources_sinks() # check the tim file @@ -436,7 +441,9 @@ def convert( f"TIM file '{tim_file}' not found for QUANTITY={forcing.quantity}" ) - time_series = self.parse_tim_model(tim_file, ext_file_quantity_list) + time_series = self.parse_tim_model( + tim_file, ext_file_quantity_list, **temp_salinity_mdu + ) data = { "id": "L1", diff --git a/hydrolib/tools/ext_old_to_new/main_converter.py b/hydrolib/tools/ext_old_to_new/main_converter.py index 2bcb12fa0..4a97b1568 100644 --- a/hydrolib/tools/ext_old_to_new/main_converter.py +++ b/hydrolib/tools/ext_old_to_new/main_converter.py @@ -236,9 +236,20 @@ def _convert_forcing(self, forcing) -> Union[Boundary, Lateral, Meteo, SourceSin # only the SourceSink converter needs the quantities' list if converter_class.__class__.__name__ == "SourceSinkConverter": + temp_salinity_mdu = {} + if self.fm_model is not None: + salinity = self.fm_model.physics.salinity + temperature = self.fm_model.physics.temperature + temp_salinity_mdu = { + "salinity": salinity, + "temperature": temperature, + } + quantities = self.extold_model.quantities converter_class.root_dir = self.root_dir - new_quantity_block = converter_class.convert(forcing, quantities) + new_quantity_block = converter_class.convert( + forcing, quantities, **temp_salinity_mdu + ) else: new_quantity_block = converter_class.convert(forcing) except ValueError: @@ -298,27 +309,27 @@ def from_mdu( ExternalForcingConverter: The converter object. """ try: - fmmodel = LegacyFMModel(mdu_file, recurse=False) - root_dir = fmmodel._resolved_filepath.parent + fm_model = LegacyFMModel(mdu_file, recurse=False) + root_dir = fm_model._resolved_filepath.parent - extoldfile = root_dir / fmmodel.external_forcing.extforcefile.filepath + extoldfile = root_dir / fm_model.external_forcing.extforcefile.filepath ext_file = ( - fmmodel.external_forcing.extforcefilenew._resolved_filepath - if fmmodel.external_forcing.extforcefilenew + fm_model.external_forcing.extforcefilenew._resolved_filepath + if fm_model.external_forcing.extforcefilenew else root_dir / ext_file ) inifield_file = ( - fmmodel.geometry.inifieldfile._resolved_filepath - if fmmodel.geometry.inifieldfile + fm_model.geometry.inifieldfile._resolved_filepath + if fm_model.geometry.inifieldfile else root_dir / inifield_file ) structure_file = ( - fmmodel.geometry.structurefile[0]._resolved_filepath - if fmmodel.geometry.structurefile + fm_model.geometry.structurefile[0]._resolved_filepath + if fm_model.geometry.structurefile else root_dir / structure_file ) - return cls(extoldfile, ext_file, inifield_file, structure_file, fmmodel) + return cls(extoldfile, ext_file, inifield_file, structure_file, fm_model) except Exception as error: if suppress_errors: diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 6d3e0f0ad..7137ac892 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -1,6 +1,6 @@ from pathlib import Path from typing import Dict, List -from unittest.mock import MagicMock, patch +from unittest.mock import MagicMock, Mock, patch import pytest from pydantic.v1.error_wrappers import ValidationError @@ -19,11 +19,11 @@ class TestExtOldToNewFromMDU: def test_wind_combi_uniform_curvi(self, capsys, input_files_dir: Path): - main_converter._verbose = True mdu_filename = ( input_files_dir / "e02/f011_wind/c081_combi_uniform_curvi/windcase.mdu" ) converter = ExternalForcingConverter.from_mdu(mdu_filename) + converter.verbose = True _, _, _ = converter.update() fm_model = converter.fm_model assert isinstance(fm_model, LegacyFMModel) @@ -251,3 +251,39 @@ def test_sources_sinks_only(self, old_forcing_file_boundary: Dict[str, str]): assert len(inifield_model.initial) == 2 quantities = ext_model.source_sink quantities[0].name = "discharge_salinity_temperature_sorsin" + + def test_sources_sinks_with_fm(self, old_forcing_file_boundary: Dict[str, str]): + """ + The old external forcing file contains only 3 quantities `discharge_salinity_temperature_sorsin`, + `initialsalinity`, and `initialtemperature`. + + - polyline 2*3 file `leftsor.pliz` is used to read the source and sink points. + - tim file `tim-3-columns.tim` with 3 columns (plus the time column) the name should be the same as the + polyline but the `tim-3-columns.tim` is mocked in the test. + + """ + path = "tests/data/input/source-sink/source-sink.ext" + converter = ExternalForcingConverter(path) + + # Mock the fm_model + mock_fm_model = Mock() + mock_fm_model.physics.salinity = False + mock_fm_model.physics.temperature = False + converter._fm_model = mock_fm_model + + tim_file = Path("tim-3-columns.tim") + with patch("pathlib.Path.with_suffix", return_value=tim_file): + ext_model, inifield_model, structure_model = converter.update() + + # all the quantities in the old external file are initial conditions + # check that all the quantities (3) were converted to initial conditions + num_quantities = 1 + assert len(ext_model.source_sink) == num_quantities + # no parameters or any other structures, lateral or meteo data + assert len(inifield_model.parameter) == 0 + assert len(ext_model.lateral) == 0 + assert len(ext_model.meteo) == 0 + assert len(structure_model.structure) == 0 + assert len(inifield_model.initial) == 2 + quantities = ext_model.source_sink + quantities[0].name = "discharge_salinity_temperature_sorsin" From 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files" +optional = false +python-versions = ">=3.9" +files = [ + {file = "zipp-3.21.0-py3-none-any.whl", hash = "sha256:ac1bbe05fd2991f160ebce24ffbac5f6d11d83dc90891255885223d42b3cd931"}, + {file = "zipp-3.21.0.tar.gz", hash = "sha256:2c9958f6430a2040341a52eb608ed6dd93ef4392e02ffe219417c1b28b5dd1f4"}, +] + +[package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +cover = ["pytest-cov"] +doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +enabler = ["pytest-enabler (>=2.2)"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] +type = ["pytest-mypy"] + +[metadata] +lock-version = "2.0" +python-versions = ">=3.9,<4" +content-hash = "2ac3fea65711a94806382198bdc876f340fe21bb50ecdc30fb167c8d8c5aebdc" From f0865977160fba916aad010642d45727ad931efa Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Tue, 7 Jan 2025 14:50:22 +0100 Subject: [PATCH 180/193] compare the temperature and salinity between the mdu vs ext vs tim file --- hydrolib/tools/ext_old_to_new/converters.py | 42 +++++++++++++++++++++ tests/tools/test_main_converter.py | 4 +- 2 files changed, 44 insertions(+), 2 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index b35858f6b..94325ed44 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -299,6 +299,9 @@ def parse_tim_model( Args: tim_file (Path): The path to the TIM file. ext_file_quantity_list (List[str]): A list of other quantities that are present in the external forcings file. + **kwargs: keyword argumens that will be provided if you want to provide the temperature and salinity + details from the mdu file, the dictionary will have two keys `temperature`, `salinity` and the values are + only bool. (i.e. {"temperature", False, "salinity": True}) Returns: Dict[str, List[float]]: A dictionary containing the time series data form each column in the tim_file. @@ -340,6 +343,28 @@ def parse_tim_model( "salinitydelta": [3.0, 3.0, 3.0, 3.0, 3.0], "initialtracer-anyname": [4.0, 4.0, 4.0, 4.0, 4.0], } + + - the function will raise a `ValueError` if the temperature and salinity are present in the MDU file (value + is 1) file but not in the external forcings file. + + mdu file: + ``` + [physics] + ... + Salinity = 1 # Include salinity, (0=no, 1=yes) + ... + Temperature = 1 # Include temperature, (0=no, 1=only transport, 3=excess model of D3D,5=heat flux model (5) of D3D) + ``` + external forcings file: + ``` + QUANTITY=initialtemperature + FILENAME=right.pol + ... + + QUANTITY=initialsalinity + FILENAME=right.pol + ... + ``` """ time_file = TimParser.parse(tim_file) tim_model = TimModel(**time_file) @@ -356,6 +381,23 @@ def parse_tim_model( ext_file_quantity_list ) + # test if the temperature and salinity in the ext file conforms with the mdu file + # compare the temperature and salinity from mdu with the temperature and salinity from the external file + if kwargs: + # the kwargs will be provided only from the source and sinks converter + if ( + kwargs["temperature"] + and "temperaturedelta" not in temp_salinity_from_ext + ): + raise ValueError( + "Temperature is present in the MDU file but not in the external forcings file." + ) + + if kwargs["salinity"] and "salinitydelta" not in temp_salinity_from_ext: + raise ValueError( + "Salinity is present in the MDU file but not in the external forcings file." + ) + ext_file_quantity_list = ( ["discharge"] + list(temp_salinity_from_ext.keys()) diff --git a/tests/tools/test_main_converter.py b/tests/tools/test_main_converter.py index 7137ac892..a0061a267 100644 --- a/tests/tools/test_main_converter.py +++ b/tests/tools/test_main_converter.py @@ -267,8 +267,8 @@ def test_sources_sinks_with_fm(self, old_forcing_file_boundary: Dict[str, str]): # Mock the fm_model mock_fm_model = Mock() - mock_fm_model.physics.salinity = False - mock_fm_model.physics.temperature = False + mock_fm_model.physics.salinity = True + mock_fm_model.physics.temperature = True converter._fm_model = mock_fm_model tim_file = Path("tim-3-columns.tim") From b1600f4db910463a7222d8ba5b2b15505576fc66 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 10:25:26 +0100 Subject: [PATCH 181/193] more descriptive variable name --- hydrolib/tools/ext_old_to_new/converters.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 96f561647..b7a1e7fc4 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -269,10 +269,10 @@ def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: 4: [4.0, 4.0, 4.0, 4.0, 4.0] } """ - num_locations = len(tim_model.timeseries[0].data) + num_columns = len(tim_model.timeseries[0].data) # Initialize a dictionary to collect data for each location - data = {loc: [] for loc in range(1, num_locations + 1)} + data = {loc: [] for loc in range(1, num_columns + 1)} # Extract time series data for each location for record in tim_model.timeseries: From c372121eff80330791de8dae787fd57181b14aa2 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 10:27:25 +0100 Subject: [PATCH 182/193] add missing function parameter docstring --- hydrolib/core/dflowfm/ini/util.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/hydrolib/core/dflowfm/ini/util.py b/hydrolib/core/dflowfm/ini/util.py index ea57c4c4f..11a3ed846 100644 --- a/hydrolib/core/dflowfm/ini/util.py +++ b/hydrolib/core/dflowfm/ini/util.py @@ -666,7 +666,7 @@ def _get_all_unknown_keywords( Get all unknown keywords in the data. Args: - data: + data: Dict[str, Any]: Input data containing all properties which are checked on unknown keywords. fields: Dict[str, ModelField]: Known fields of the Model. excluded_fields: Set[str]: Fields which should be excluded from the check for unknown keywords. From 604af4492f29d47e791bd798839955c817fdc79f Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 10:29:23 +0100 Subject: [PATCH 183/193] correct docstrings and type hints --- hydrolib/core/dflowfm/ext/models.py | 4 ++-- hydrolib/core/dflowfm/polyfile/models.py | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 71756442c..e9d6781fe 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -197,7 +197,7 @@ class SourceSink(INIBasedModel): [UM Sec.C.5.2.4](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.4). """ - _header: Literal["Lateral"] = "SourceSink" + _header: Literal["SourceSink"] = "SourceSink" id: str = Field(alias="id") name: str = Field("", alias="name") locationfile: DiskOnlyFileModel = Field( @@ -221,7 +221,7 @@ class SourceSink(INIBasedModel): operand: Optional[Operand] = Field(Operand.override.value, alias="operand") @classmethod - def _exclude_from_validation(cls, input_data: Optional = None) -> Set: + def _exclude_from_validation(cls, input_data: Optional[dict] = None) -> Set: fields = cls.__fields__ unknown_keywords = [ key diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index 66a5e04d6..741d59586 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -144,12 +144,12 @@ def y(self) -> List[float]: """Y-coordinates of all points in the PolyFile.""" return [point.y for obj in self.objects for point in obj.points] - def get_z_sources_sinks(self) -> Tuple[float, List[float]]: + def get_z_sources_sinks(self) -> Tuple[List[float]]: """ Get the z values of the source and sink points from the polyline file. Returns: - z_source, z_sinkA: Tuple[float, List[float]]: + z_source, z_sinkA: Tuple[List[float]]: If the polyline has data (more than 3 columns), then both the z_source and z_sink will be a list of two values. Otherwise, the z_source and the z_sink will be a single value each. From d246cd1f25d04899aaec8213477e3792a86a7121 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 10:39:20 +0100 Subject: [PATCH 184/193] add example and test for the `PolyFile.get_z_source_sinks`method in case of a polyline without z values --- hydrolib/core/dflowfm/polyfile/models.py | 10 ++++++++ .../dflowfm/polyfile/test_polyline_models.py | 24 +++++++++++++++++++ 2 files changed, 34 insertions(+) diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index 741d59586..764249255 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -153,6 +153,9 @@ def get_z_sources_sinks(self) -> Tuple[List[float]]: If the polyline has data (more than 3 columns), then both the z_source and z_sink will be a list of two values. Otherwise, the z_source and the z_sink will be a single value each. + Note: + - calling this method on a polyline file that does not have z-values will return a list of None. + Examples: in case the polyline has 3 columns: >>> polyline = PolyFile("tests/data/input/source-sink/leftsor.pliz") @@ -165,6 +168,13 @@ def get_z_sources_sinks(self) -> Tuple[List[float]]: >>> z_source, z_sink = polyline.get_z_sources_sinks() >>> print(z_source, z_sink) [-3, -2.9] [-4.2, -5.35] + + in case the polyline does not have z-values: + >>> root_dir = "tests/data/input/dflowfm_individual_files/polylines" + >>> polyline = PolyFile(f"{root_dir}/boundary-polyline-no-z-no-label.pli") + >>> z_source, z_sink = polyline.get_z_sources_sinks() + >>> print(z_source, z_sink) + [None] [None] """ has_data = True if self.objects[0].points[0].data else False diff --git a/tests/dflowfm/polyfile/test_polyline_models.py b/tests/dflowfm/polyfile/test_polyline_models.py index 75e358f79..90b272e27 100644 --- a/tests/dflowfm/polyfile/test_polyline_models.py +++ b/tests/dflowfm/polyfile/test_polyline_models.py @@ -132,6 +132,30 @@ def test_get_z_sources_sinks_multiple_values(self): assert z_source == [-3, -2.90] assert z_sink == [-4.2, -5.35] + def test_get_z_sources_sinks_no_z_values(self, polylines_dir: Path): + """ + The test case is based on the following assumptions: + - The polyline has only two columns, so the zsink and zsource will have no values. + ``` + zsink = [] + zsource = [] + ``` + + - The polyline file has the following structure: + ``` + L1 + 2 2 + 63.35 12.95 + 45.20 6.35 + ``` + """ + path = polylines_dir / "boundary-polyline-no-z-no-label.pli" + polyfile = PolyFile(path) + + z_source, z_sink = polyfile.get_z_sources_sinks() + assert z_source == [None] + assert z_sink == [None] + class TestPLIZExtension: From 89b55a0284d84ce61ead6121a887f58bbf1d6239 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 15:30:47 +0100 Subject: [PATCH 185/193] use `ForcingData` class as a type for the discharge, temperature, and salinity in the `SourceSink` class --- hydrolib/core/dflowfm/bc/models.py | 2 +- hydrolib/core/dflowfm/ext/models.py | 10 ++++------ 2 files changed, 5 insertions(+), 7 deletions(-) diff --git a/hydrolib/core/dflowfm/bc/models.py b/hydrolib/core/dflowfm/bc/models.py index 976712c15..ad20d8cb4 100644 --- a/hydrolib/core/dflowfm/bc/models.py +++ b/hydrolib/core/dflowfm/bc/models.py @@ -845,7 +845,7 @@ class RealTime(StrEnum): """str: Realtime data source, externally provided""" -ForcingData = Union[float, RealTime, ForcingModel] +ForcingData = Union[float, List[float], RealTime, ForcingModel] """Data type that selects from three different types of forcing data: * a scalar float constant * "realtime" keyword, indicating externally controlled. diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index e9d6781fe..4bcd476d3 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -193,7 +193,7 @@ class SourceSink(INIBasedModel): A `[SourceSink]` block for use inside an external forcings file, i.e., a [ExtModel][hydrolib.core.dflowfm.ext.models.SourceSink]. - All lowercased attributes match with the lateral input as described in + All lowercased attributes match with the source-sink input as described in [UM Sec.C.5.2.4](https://content.oss.deltares.nl/delft3dfm1d2d/D-Flow_FM_User_Manual_1D2D.pdf#subsection.C.5.2.4). """ @@ -210,13 +210,11 @@ class SourceSink(INIBasedModel): zsource: Optional[Union[float, List[float]]] = Field(alias="zSource") zsink: Optional[Union[float, List[float]]] = Field(alias="zSink") - discharge: Union[float, List[float]] = Field(alias="discharge") + discharge: ForcingData = Field(alias="discharge") area: Optional[float] = Field(alias="Area") - salinitydelta: Optional[Union[List[float], float]] = Field(alias="SalinityDelta") - temperaturedelta: Optional[Union[List[float], float]] = Field( - alias="TemperatureDelta" - ) + salinitydelta: Optional[ForcingData] = Field(alias="SalinityDelta") + temperaturedelta: Optional[ForcingData] = Field(alias="TemperatureDelta") interpolationmethod: Optional[str] = Field(alias="interpolationMethod") operand: Optional[Operand] = Field(Operand.override.value, alias="operand") From a074a44b0f10abc589a80edcd4caed7a67c15334 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 15:43:46 +0100 Subject: [PATCH 186/193] remove `interpolationmethod` and `operand` from the attributes of the `SourceSink` class --- hydrolib/core/dflowfm/ext/models.py | 2 -- hydrolib/tools/ext_old_to_new/converters.py | 4 ---- tests/dflowfm/ext/test_ext.py | 4 ---- 3 files changed, 10 deletions(-) diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index 4bcd476d3..caaa8ef1c 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -215,8 +215,6 @@ class SourceSink(INIBasedModel): salinitydelta: Optional[ForcingData] = Field(alias="SalinityDelta") temperaturedelta: Optional[ForcingData] = Field(alias="TemperatureDelta") - interpolationmethod: Optional[str] = Field(alias="interpolationMethod") - operand: Optional[Operand] = Field(Operand.override.value, alias="operand") @classmethod def _exclude_from_validation(cls, input_data: Optional[dict] = None) -> Set: diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index b7a1e7fc4..f9f9afd6f 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -499,10 +499,6 @@ def convert( "zsink": z_sink, } data = data | time_series - - data = convert_interpolation_data(forcing, data) - data["operand"] = forcing.operand - new_block = SourceSink(**data) return new_block diff --git a/tests/dflowfm/ext/test_ext.py b/tests/dflowfm/ext/test_ext.py index 3d08cfb19..2d660c014 100644 --- a/tests/dflowfm/ext/test_ext.py +++ b/tests/dflowfm/ext/test_ext.py @@ -229,8 +229,6 @@ def source_sink_data(self) -> Dict[str, Any]: "ycoordinates": [12.950216, 6.350155], "zsource": -3.0, "zsink": -4.2, - "interpolationmethod": "", - "operand": "O", "discharge": 1.1234, "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], @@ -292,8 +290,6 @@ def test_time_series_discharge_case(self): "discharge": [1.0, 2.0, 3.0, 5.0, 8.0], "temperaturedelta": [2.0, 2.0, 5.0, 8.0, 10.0], "salinitydelta": [3.0, 5.0, 12.0, 9.0, 23.0], - "interpolationmethod": "linearSpaceTime", - "operand": "O", } source_sink = SourceSink(**data) From 861616e7f4db767879aba88eb6b4ebc70541952a Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 16:18:52 +0100 Subject: [PATCH 187/193] the order is `salinity` then `temperature` in the tim file --- hydrolib/tools/ext_old_to_new/converters.py | 6 +++--- hydrolib/tools/ext_old_to_new/utils.py | 12 ++++++------ tests/tools/test_converters_source_sink.py | 12 ++++++------ tests/tools/test_tools_utils.py | 4 ++-- 4 files changed, 17 insertions(+), 17 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index f9f9afd6f..f800f378d 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -292,8 +292,8 @@ def parse_tim_model( The order of the quantities in the tim file should be as follows: - time - discharge - - temperaturedelta (optional) - salinitydelta (optional) + - temperaturedelta (optional) - initialtracer-anyname (optional) - any other quantities from the external forcings file. @@ -340,8 +340,8 @@ def parse_tim_model( >>> print(time_series) { "discharge": [1.0, 1.0, 1.0, 1.0, 1.0], - "temperaturedelta": [2.0, 2.0, 2.0, 2.0, 2.0], - "salinitydelta": [3.0, 3.0, 3.0, 3.0, 3.0], + "salinitydelta": [2.0, 2.0, 2.0, 2.0, 2.0], + "temperaturedelta": [3.0, 3.0, 3.0, 3.0, 3.0], "initialtracer-anyname": [4.0, 4.0, 4.0, 4.0, 4.0], } diff --git a/hydrolib/tools/ext_old_to_new/utils.py b/hydrolib/tools/ext_old_to_new/utils.py index 378b30c4e..f0e49a066 100644 --- a/hydrolib/tools/ext_old_to_new/utils.py +++ b/hydrolib/tools/ext_old_to_new/utils.py @@ -241,12 +241,12 @@ def find_temperature_salinity_in_quantities(strings: List[str]) -> Dict[str, int strings (List[str]): A list of strings to search. Returns: - Dict[str, int]: A dictionary with keys as "temperature" or "salinity" + Dict[str, int]: A dictionary with keys as "salinity" or "temperature" and values 3 and 4 respectively. Examples: >>> find_temperature_salinity_in_quantities(["temperature", "Salinity"]) - OrderedDict({"temperaturedelta": 3, "salinitydelta": 4}) + OrderedDict({"salinitydelta": 3, "temperaturedelta": 4}) >>> find_temperature_salinity_in_quantities(["Temperature"]) OrderedDict({"temperaturedelta": 3}) @@ -262,11 +262,11 @@ def find_temperature_salinity_in_quantities(strings: List[str]) -> Dict[str, int """ result = OrderedDict() - if any("temperature" in string.lower() for string in strings): - result["temperaturedelta"] = 3 if any("salinity" in string.lower() for string in strings): - result["salinitydelta"] = ( - result.get("temperaturedelta", 2) + 1 + result["salinitydelta"] = 3 + if any("temperature" in string.lower() for string in strings): + result["temperaturedelta"] = ( + result.get("salinitydelta", 2) + 1 ) # Default temperature value is 2 return result diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py index bdb32aa4b..fcada7300 100644 --- a/tests/tools/test_converters_source_sink.py +++ b/tests/tools/test_converters_source_sink.py @@ -25,8 +25,8 @@ def test_default(self): time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] - assert time_series_data["temperaturedelta"] == [2.0, 2.0, 2.0, 2.0, 2.0] - assert time_series_data["salinitydelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] + assert time_series_data["salinitydelta"] == [2.0, 2.0, 2.0, 2.0, 2.0] + assert time_series_data["temperaturedelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] def test_list_of_ext_quantities_tim_column_mismatch(self): @@ -171,8 +171,8 @@ def test_default(self): converter.root_dir = "tests/data/input/source-sink" new_quantity_block = converter.convert(forcing, ext_file_other_quantities) assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] - assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] - assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.temperaturedelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.salinitydelta == [2.0, 2.0, 2.0, 2.0, 2.0] assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] assert new_quantity_block.zsink == [-4.2] assert new_quantity_block.zsource == [-3] @@ -230,8 +230,8 @@ def test_4_5_columns_polyline(self): with patch("pathlib.Path.with_suffix", return_value=tim_file): new_quantity_block = converter.convert(forcing, ext_file_other_quantities) assert new_quantity_block.initialtracer_anyname == [4.0, 4.0, 4.0, 4.0, 4.0] - assert new_quantity_block.salinitydelta == [3.0, 3.0, 3.0, 3.0, 3.0] - assert new_quantity_block.temperaturedelta == [2.0, 2.0, 2.0, 2.0, 2.0] + assert new_quantity_block.temperaturedelta == [3.0, 3.0, 3.0, 3.0, 3.0] + assert new_quantity_block.salinitydelta == [2.0, 2.0, 2.0, 2.0, 2.0] assert new_quantity_block.discharge == [1.0, 1.0, 1.0, 1.0, 1.0] assert new_quantity_block.zsink == [-4.2, -5.35] assert new_quantity_block.zsource == [-3, -2.90] diff --git a/tests/tools/test_tools_utils.py b/tests/tools/test_tools_utils.py index 2e2b20e22..d6ed156da 100644 --- a/tests/tools/test_tools_utils.py +++ b/tests/tools/test_tools_utils.py @@ -41,11 +41,11 @@ def test_convert_interpolation_data(): @pytest.mark.parametrize( "strings, expected", [ - (["temperature", "Salinity"], {"temperaturedelta": 3, "salinitydelta": 4}), + (["temperature", "Salinity"], {"temperaturedelta": 4, "salinitydelta": 3}), (["Temperature"], {"temperaturedelta": 3}), (["Salinity"], {"salinitydelta": 3}), (["tracers"], {}), - (["TEMPERATURE", "salInity"], {"temperaturedelta": 3, "salinitydelta": 4}), + (["TEMPERATURE", "salInity"], {"temperaturedelta": 4, "salinitydelta": 3}), ([], {}), (["No relevant data here.", "Nothing to match."], {}), ], From ec978a71ab5067cc2f87d24bbf70a218e643104e Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Thu, 9 Jan 2025 16:28:17 +0100 Subject: [PATCH 188/193] rename the `kwargs` to a descriptive name `mdu_quantities` --- hydrolib/tools/ext_old_to_new/converters.py | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index f800f378d..ccfcbb7bb 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -282,7 +282,7 @@ def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: return data def parse_tim_model( - self, tim_file: Path, ext_file_quantity_list: List[str], **kwargs + self, tim_file: Path, ext_file_quantity_list: List[str], **mdu_quantities ) -> Dict[str, List[float]]: """Parse the source and sinks related time series from the tim file. @@ -300,7 +300,7 @@ def parse_tim_model( Args: tim_file (Path): The path to the TIM file. ext_file_quantity_list (List[str]): A list of other quantities that are present in the external forcings file. - **kwargs: keyword argumens that will be provided if you want to provide the temperature and salinity + **mdu_quantities: keyword argumens that will be provided if you want to provide the temperature and salinity details from the mdu file, the dictionary will have two keys `temperature`, `salinity` and the values are only bool. (i.e. {"temperature", False, "salinity": True}) @@ -384,17 +384,20 @@ def parse_tim_model( # test if the temperature and salinity in the ext file conforms with the mdu file # compare the temperature and salinity from mdu with the temperature and salinity from the external file - if kwargs: + if mdu_quantities: # the kwargs will be provided only from the source and sinks converter if ( - kwargs["temperature"] + mdu_quantities["temperature"] and "temperaturedelta" not in temp_salinity_from_ext ): raise ValueError( "Temperature is present in the MDU file but not in the external forcings file." ) - if kwargs["salinity"] and "salinitydelta" not in temp_salinity_from_ext: + if ( + mdu_quantities["salinity"] + and "salinitydelta" not in temp_salinity_from_ext + ): raise ValueError( "Salinity is present in the MDU file but not in the external forcings file." ) @@ -404,8 +407,6 @@ def parse_tim_model( + list(temp_salinity_from_ext.keys()) + required_quantities_from_ext ) - # here process the temperature and salinity coming from the mdu (in the kwargs) with the - print(kwargs) if len(time_series) != len(ext_file_quantity_list): raise ValueError( From d9ae51df5c737f70404619c4461da4e8f9af4cc3 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 10 Jan 2025 13:32:08 +0100 Subject: [PATCH 189/193] test the combination of mdu and ext file --- hydrolib/tools/ext_old_to_new/converters.py | 74 +++---- tests/tools/test_converters_source_sink.py | 219 +++++++++++++------- 2 files changed, 172 insertions(+), 121 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index ccfcbb7bb..a975f6742 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -301,8 +301,8 @@ def parse_tim_model( tim_file (Path): The path to the TIM file. ext_file_quantity_list (List[str]): A list of other quantities that are present in the external forcings file. **mdu_quantities: keyword argumens that will be provided if you want to provide the temperature and salinity - details from the mdu file, the dictionary will have two keys `temperature`, `salinity` and the values are - only bool. (i.e. {"temperature", False, "salinity": True}) + details from the mdu file, the dictionary will have two keys `temperature`, `salinity` and the values are + only bool. (i.e. {"temperature", False, "salinity": True}) Returns: Dict[str, List[float]]: A dictionary containing the time series data form each column in the tim_file. @@ -385,38 +385,31 @@ def parse_tim_model( # test if the temperature and salinity in the ext file conforms with the mdu file # compare the temperature and salinity from mdu with the temperature and salinity from the external file if mdu_quantities: - # the kwargs will be provided only from the source and sinks converter - if ( - mdu_quantities["temperature"] - and "temperaturedelta" not in temp_salinity_from_ext - ): - raise ValueError( - "Temperature is present in the MDU file but not in the external forcings file." - ) - - if ( - mdu_quantities["salinity"] - and "salinitydelta" not in temp_salinity_from_ext - ): - raise ValueError( - "Salinity is present in the MDU file but not in the external forcings file." - ) - - ext_file_quantity_list = ( - ["discharge"] - + list(temp_salinity_from_ext.keys()) - + required_quantities_from_ext - ) + mdu_file_quantity_list = [key for key, val in mdu_quantities.items() if val] + temp_salinity_from_mdu = find_temperature_salinity_in_quantities( + mdu_file_quantity_list + ) + final_temp_salinity = temp_salinity_from_ext | temp_salinity_from_mdu + # the kwargs will be provided only from the source and sink converter + # Ensure 'temperature' comes before 'salinity' + keys = list(final_temp_salinity.keys()) + if "temperaturedelta" in keys and "salinitydelta" in keys: + keys.remove("salinitydelta") + keys.insert(keys.index("temperaturedelta"), "salinitydelta") + else: + keys = list(temp_salinity_from_ext.keys()) + + final_quantities_list = ["discharge"] + keys + required_quantities_from_ext - if len(time_series) != len(ext_file_quantity_list): + if len(time_series) != len(final_quantities_list): raise ValueError( f"Number of columns in the TIM file '{tim_file}: {len(time_series)}' does not match the number of " - f"quantities in the external forcings file: {ext_file_quantity_list}." + f"quantities in the external forcing file: {final_quantities_list}." ) time_series = { - ext_file_quantity_list[i]: time_series[i + 1] - for i in range(len(ext_file_quantity_list)) + final_quantities_list[i]: time_series[i + 1] + for i in range(len(final_quantities_list)) } return time_series @@ -436,27 +429,24 @@ def convert( ext_file_quantity_list: List[str] = None, **temp_salinity_mdu, ) -> SourceSink: - """Convert an old external forcing block with Sources and sinks to a boundary + """Convert an old external forcing block with Sources and sinks to a SourceSink forcing block suitable for inclusion in a new external forcings file. - This function takes a forcing block from an old external forcings - file, represented by an instance of ExtOldForcing, and converts it - into a Meteo object. The Boundary object is suitable for use in new - external forcings files, adhering to the updated format and - specifications. - Args: - forcing (ExtOldForcing): The contents of a single forcing block - in an old external forcings file. This object contains all the - necessary information, such as quantity, values, and timestamps, - required for the conversion process. + forcing (ExtOldForcing): The contents of a single forcing block in an old external forcings file. This + object contains all the necessary information, such as quantity, values, and timestamps, required for the + conversion process. ext_file_quantity_list (List[str], default is None): A list of other quantities that are present in the - external forcings file. + external forcings file. + **temp_salinity_mdu: + keyword arguments that will be provided if you want to provide the temperature and salinity details from + the mdu file, the dictionary will have two keys `temperature`, `salinity` and the values are only bool. + >>> {'salinity': True, 'temperature': True} Returns: - Boundary: A Boindary object that represents the converted forcing + SourceSink: A SourceSink object that represents the converted forcing block, ready to be included in a new external forcings file. The - Boundary object conforms to the new format specifications, ensuring + SourceSink object conforms to the new format specifications, ensuring compatibility with updated systems and models. Raises: diff --git a/tests/tools/test_converters_source_sink.py b/tests/tools/test_converters_source_sink.py index fcada7300..df313333c 100644 --- a/tests/tools/test_converters_source_sink.py +++ b/tests/tools/test_converters_source_sink.py @@ -4,93 +4,154 @@ import pytest from hydrolib.core.dflowfm.extold.models import ExtOldForcing, ExtOldQuantity -from hydrolib.core.dflowfm.polyfile.models import PolyFile from hydrolib.tools.ext_old_to_new.converters import SourceSinkConverter class TestParseTimFileForSourceSink: - def test_default(self): - """ - The test case is based on the following assumptions: - - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 4 quantities. - """ - tim_file = Path("tests/data/input/source-sink/leftsor.tim") - ext_file_quantity_list = [ - "discharge", - "temperature", - "salinity", - "initialtracer_anyname", - ] - converter = SourceSinkConverter() - - time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) - assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] - assert time_series_data["salinitydelta"] == [2.0, 2.0, 2.0, 2.0, 2.0] - assert time_series_data["temperaturedelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] - assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] - - def test_list_of_ext_quantities_tim_column_mismatch(self): - """ - The test case is based on the following assumptions: - - The tim file has 4 columns (plus the time column), but the list of ext quantities has only 3 quantities. - """ - tim_file = Path("tests/data/input/source-sink/leftsor.tim") - ext_file_quantity_list = ["discharge", "temperature", "salinity"] - converter = SourceSinkConverter() - with pytest.raises(ValueError): - converter.parse_tim_model(tim_file, ext_file_quantity_list) - - def test_no_temperature(self): - """ - The test case is based on the following assumptions: - - The tim file has 3 columns (plus the time column), but the list of ext quantities has only 3 quantities. - """ - tim_file = Path("tests/data/input/source-sink/no_temperature_or_salinity.tim") - ext_file_quantity_list = [ - "discharge", - "salinity", - "initialtracer_anyname", - ] + time_file_full = Path("tests/data/input/source-sink/leftsor.tim") + + @pytest.mark.parametrize( + "tim_file, ext_file_quantity_list, expected_data", + [ + # The tim file has 4 columns (plus the time column), and the list of ext quantities has 4 quantities. + pytest.param( + time_file_full, + ["discharge", "temperature", "salinity", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="test_default_all_quantities_comes_from_ext", + ), + # The tim file has 4 columns (plus the time column), but the list of ext quantities has only 3 quantities. + pytest.param( + time_file_full, + ["discharge", "temperature", "salinity"], + None, + id="test_list_of_ext_quantities_tim_column_mismatch", + ), + # The tim file has 3 columns (plus the time column), but the list of ext quantities has only 3 quantities. + pytest.param( + Path("tests/data/input/source-sink/no_temperature_or_salinity.tim"), + ["discharge", "salinity", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "salinitydelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="no_temperature", + ), + # The tim file has 3 columns (plus the time column), and the list of ext quantities has only 3 quantities. + pytest.param( + Path("tests/data/input/source-sink/no_temperature_or_salinity.tim"), + ["discharge", "temperature", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="no_salinity", + ), + # The tim file has 2 columns (plus the time column), and the list of ext quantities has only 2 quantities. + pytest.param( + Path("tests/data/input/source-sink/no_temperature_no_salinity.tim"), + ["discharge", "initialtracer_anyname"], + { + "discharge": [1.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="no_temperature_no_salinity", + ), + ], + ) + def test_parse_tim_model(self, tim_file, ext_file_quantity_list, expected_data): converter = SourceSinkConverter() - time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) - assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] - assert time_series_data["salinitydelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] - assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] - - def test_no_salinity(self): - """ - The test case is based on the following assumptions: - - The tim file has 3 columns (plus the time column), and the list of ext quantities has only 3 quantities. - """ - tim_file = Path("tests/data/input/source-sink/no_temperature_or_salinity.tim") - ext_file_quantity_list = [ - "discharge", - "temperature", - "initialtracer_anyname", - ] + if expected_data is None: + with pytest.raises(ValueError): + converter.parse_tim_model(tim_file, ext_file_quantity_list) + else: + time_series_data = converter.parse_tim_model( + tim_file, ext_file_quantity_list + ) + assert time_series_data == expected_data + + @pytest.mark.parametrize( + "tim_file, ext_file_quantity_list, mdu_quantities, expected_data", + [ + pytest.param( + time_file_full, + ["discharge", "initialtracer_anyname"], + {"salinity": True, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="all_quantities_from_mdu", + ), + pytest.param( + time_file_full, + ["discharge", "temperature", "initialtracer_anyname"], + {"salinity": True, "temperature": False}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_from_ext_salinity_from_mdu", + ), + pytest.param( + time_file_full, + ["discharge", "salinity", "initialtracer_anyname"], + {"salinity": False, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_from_mdu_salinity_from_ext", + ), + pytest.param( + time_file_full, + ["discharge", "salinity", "initialtracer_anyname"], + {"salinity": True, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_salinity_from_mdu", + ), + pytest.param( + time_file_full, + ["discharge", "salinity", "temperature", "initialtracer_anyname"], + {"salinity": False, "temperature": True}, + { + "discharge": [1.0] * 5, + "salinitydelta": [2.0] * 5, + "temperaturedelta": [3.0] * 5, + "initialtracer_anyname": [4.0] * 5, + }, + id="temp_from_mdu_temp_salinity_from_ext", + ), + ], + ) + def test_parse_tim_model_with_mdu( + self, tim_file, ext_file_quantity_list, mdu_quantities, expected_data + ): converter = SourceSinkConverter() - time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) - assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] - assert time_series_data["temperaturedelta"] == [3.0, 3.0, 3.0, 3.0, 3.0] - assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] - - def test_no_salinity_no_temperature(self): - """ - The test case is based on the following assumptions: - - The tim file has 2 columns (plus the time column), and the list of ext quantities has only 2 quantities. - """ - tim_file = Path("tests/data/input/source-sink/no_temperature_no_salinity.tim") - ext_file_quantity_list = [ - "discharge", - "initialtracer_anyname", - ] - converter = SourceSinkConverter() - - time_series_data = converter.parse_tim_model(tim_file, ext_file_quantity_list) - assert time_series_data["discharge"] == [1.0, 1.0, 1.0, 1.0, 1.0] - assert time_series_data["initialtracer_anyname"] == [4.0, 4.0, 4.0, 4.0, 4.0] + time_series_data = converter.parse_tim_model( + tim_file, ext_file_quantity_list, **mdu_quantities + ) + assert time_series_data == expected_data class TestSourceSinkConverter: From 2c7e5f38981dc26ef943392d0d4df4a0d1571f79 Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 10 Jan 2025 13:47:20 +0100 Subject: [PATCH 190/193] abstract the lines for merging the ext_quantities and the mdu_quantities --- hydrolib/tools/ext_old_to_new/converters.py | 56 ++++++++++++++------- 1 file changed, 38 insertions(+), 18 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index a975f6742..8903c3918 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -281,6 +281,38 @@ def get_time_series_data(tim_model: TimModel) -> Dict[str, List[float]]: return data + @staticmethod + def merge_mdu_and_ext_file_quantities( + mdu_quantities: Dict[str, bool], temp_salinity_from_ext: Dict[str, int] + ) -> List[str]: + """Merge the temperature and salinity from the mdu file with the temperature and salinity from the external file. + + Args: + mdu_quantities (Dict[str, bool]): A dictionary containing the temperature and salinity details from the + mdu file, with bool values indecating if the temperature/salinity is activated in the mdu file. + temp_salinity_from_ext (Dict[str,int]): A dictionary containing the temperature and salinity details from + the external file. + + Returns: + List[str]: A list of quantities that will be used in the tim file. + """ + if mdu_quantities: + mdu_file_quantity_list = [key for key, val in mdu_quantities.items() if val] + temp_salinity_from_mdu = find_temperature_salinity_in_quantities( + mdu_file_quantity_list + ) + final_temp_salinity = temp_salinity_from_ext | temp_salinity_from_mdu + # the kwargs will be provided only from the source and sink converter + # Ensure 'temperature' comes before 'salinity' + keys = list(final_temp_salinity.keys()) + if "temperaturedelta" in keys and "salinitydelta" in keys: + keys.remove("salinitydelta") + keys.insert(keys.index("temperaturedelta"), "salinitydelta") + else: + keys = list(temp_salinity_from_ext.keys()) + + return keys + def parse_tim_model( self, tim_file: Path, ext_file_quantity_list: List[str], **mdu_quantities ) -> Dict[str, List[float]]: @@ -382,24 +414,12 @@ def parse_tim_model( ext_file_quantity_list ) - # test if the temperature and salinity in the ext file conforms with the mdu file - # compare the temperature and salinity from mdu with the temperature and salinity from the external file - if mdu_quantities: - mdu_file_quantity_list = [key for key, val in mdu_quantities.items() if val] - temp_salinity_from_mdu = find_temperature_salinity_in_quantities( - mdu_file_quantity_list - ) - final_temp_salinity = temp_salinity_from_ext | temp_salinity_from_mdu - # the kwargs will be provided only from the source and sink converter - # Ensure 'temperature' comes before 'salinity' - keys = list(final_temp_salinity.keys()) - if "temperaturedelta" in keys and "salinitydelta" in keys: - keys.remove("salinitydelta") - keys.insert(keys.index("temperaturedelta"), "salinitydelta") - else: - keys = list(temp_salinity_from_ext.keys()) - - final_quantities_list = ["discharge"] + keys + required_quantities_from_ext + final_temp_salinity = self.merge_mdu_and_ext_file_quantities( + mdu_quantities, temp_salinity_from_ext + ) + final_quantities_list = ( + ["discharge"] + final_temp_salinity + required_quantities_from_ext + ) if len(time_series) != len(final_quantities_list): raise ValueError( From 27cc78db04ab5625603f6e9c7ea00df5625756db Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Fri, 10 Jan 2025 14:01:28 +0100 Subject: [PATCH 191/193] update docstring --- hydrolib/tools/ext_old_to_new/converters.py | 17 +++++++++++------ 1 file changed, 11 insertions(+), 6 deletions(-) diff --git a/hydrolib/tools/ext_old_to_new/converters.py b/hydrolib/tools/ext_old_to_new/converters.py index 8903c3918..429d753c6 100644 --- a/hydrolib/tools/ext_old_to_new/converters.py +++ b/hydrolib/tools/ext_old_to_new/converters.py @@ -345,6 +345,11 @@ def parse_tim_model( forcings file that has one of the following prefixes `initialtracer`,`tracerbnd`, `sedfracbnd`,`initialsedfrac`, plus the discharge, temperature, and salinity. + Notes: + - The function will combine the temperature and salinity from the MDU file (value is 1) file with the + quantities mentioned in the external forcing file, and will get the list of quantities that are in the tim file. + - The function will return a dictionary with the quantities as keys and the time series data as values. + Examples: if the tim file contains 5 columns (the first column is the time): ``` @@ -358,10 +363,12 @@ def parse_tim_model( >>> ext_file_quantity_list = ["discharge", "temperature", "salinity", "initialtracer-anyname", ... "anyother-quantities"] - - the function will filter the quantities that have one of the following prefixes `initialtracer`,`tracerbnd`, - `sedfracbnd`,`initialsedfrac`, plus the discharge, temperature, and salinity. - and then compare the number of columns in the TIM file with the number of filtered quantities from the - external forcings file, if they don't match a `Value Error` will be raised. + - The function will filter the external forcing quantities that have one of the following prefixes + `initialtracer`,`tracerbnd`, `sedfracbnd`,`initialsedfrac`, plus the discharge, temperature, and salinity. + - If the mdu_quantities are provided, the function will merge the temperature and salinity from the mdu file + with the filtered quantities mentioned in the external forcing file. + - The merged list of quantities from both the ext and mdu files will then be compared with the number of + columns in the TIM file, if they don't match a `Value Error` will be raised. - Here the filtered quantities are ["discharge", "temperature", "salinity", "initialtracer-anyname"] and the tim file contains 4 columns (excluding the time column). @@ -377,8 +384,6 @@ def parse_tim_model( "initialtracer-anyname": [4.0, 4.0, 4.0, 4.0, 4.0], } - - the function will raise a `ValueError` if the temperature and salinity are present in the MDU file (value - is 1) file but not in the external forcings file. mdu file: ``` From 856fa6ccc7ff69b81f4edc013f3f147bea5c0d74 Mon Sep 17 00:00:00 2001 From: MAFarrag Date: Mon, 13 Jan 2025 16:25:04 +0100 Subject: [PATCH 192/193] correct type hint --- hydrolib/core/dflowfm/polyfile/models.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/hydrolib/core/dflowfm/polyfile/models.py b/hydrolib/core/dflowfm/polyfile/models.py index 764249255..c4d1e1f8c 100644 --- a/hydrolib/core/dflowfm/polyfile/models.py +++ b/hydrolib/core/dflowfm/polyfile/models.py @@ -144,7 +144,7 @@ def y(self) -> List[float]: """Y-coordinates of all points in the PolyFile.""" return [point.y for obj in self.objects for point in obj.points] - def get_z_sources_sinks(self) -> Tuple[List[float]]: + def get_z_sources_sinks(self) -> Tuple[List[float], List[float]]: """ Get the z values of the source and sink points from the polyline file. @@ -186,6 +186,6 @@ def get_z_sources_sinks(self) -> Tuple[List[float]]: else: z_source_sink.append([point.z]) - z_sink = z_source_sink[0] - z_source = z_source_sink[1] + z_sink: list[float | None] = z_source_sink[0] + z_source: list[float | None] = z_source_sink[1] return z_source, z_sink From b2eda4342ce24f4dd5aa622e76c8ff4f5b86f7cd Mon Sep 17 00:00:00 2001 From: Mostafa Farrag Date: Wed, 15 Jan 2025 11:24:07 +0100 Subject: [PATCH 193/193] Revert "use `ForcingData` class as a type for the discharge, temperature, and salinity in the `SourceSink` class" This reverts commit 89b55a02 Signed-off-by: Mostafa Farrag --- hydrolib/core/dflowfm/bc/models.py | 2 +- hydrolib/core/dflowfm/ext/models.py | 8 +++++--- 2 files changed, 6 insertions(+), 4 deletions(-) diff --git a/hydrolib/core/dflowfm/bc/models.py b/hydrolib/core/dflowfm/bc/models.py index ad20d8cb4..976712c15 100644 --- a/hydrolib/core/dflowfm/bc/models.py +++ b/hydrolib/core/dflowfm/bc/models.py @@ -845,7 +845,7 @@ class RealTime(StrEnum): """str: Realtime data source, externally provided""" -ForcingData = Union[float, List[float], RealTime, ForcingModel] +ForcingData = Union[float, RealTime, ForcingModel] """Data type that selects from three different types of forcing data: * a scalar float constant * "realtime" keyword, indicating externally controlled. diff --git a/hydrolib/core/dflowfm/ext/models.py b/hydrolib/core/dflowfm/ext/models.py index caaa8ef1c..78988d934 100644 --- a/hydrolib/core/dflowfm/ext/models.py +++ b/hydrolib/core/dflowfm/ext/models.py @@ -210,11 +210,13 @@ class SourceSink(INIBasedModel): zsource: Optional[Union[float, List[float]]] = Field(alias="zSource") zsink: Optional[Union[float, List[float]]] = Field(alias="zSink") - discharge: ForcingData = Field(alias="discharge") + discharge: Union[float, List[float]] = Field(alias="discharge") area: Optional[float] = Field(alias="Area") - salinitydelta: Optional[ForcingData] = Field(alias="SalinityDelta") - temperaturedelta: Optional[ForcingData] = Field(alias="TemperatureDelta") + salinitydelta: Optional[Union[List[float], float]] = Field(alias="SalinityDelta") + temperaturedelta: Optional[Union[List[float], float]] = Field( + alias="TemperatureDelta" + ) @classmethod def _exclude_from_validation(cls, input_data: Optional[dict] = None) -> Set: