Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

scan_fasta_file.pl: unable to determine taxonomy ID for sequence #856

Open
amara86 opened this issue Jul 30, 2024 · 1 comment
Open

scan_fasta_file.pl: unable to determine taxonomy ID for sequence #856

amara86 opened this issue Jul 30, 2024 · 1 comment

Comments

@amara86
Copy link

amara86 commented Jul 30, 2024

Hi,
I am trying to add genome of interest into my kraken database. The genome is not available on NCBI and I have downloaded it from somewhere else. The tax IDs for the genome are present in both nodes.dmp and names.dmp files but still kraken2 is not recognizing it. The genome sequence header are like this

Acropora_loripes_1
I tried
Acropora loripes 1
Acropora_loripes 1
but still getting the error
scan_fasta_file.pl: unable to determine taxonomy ID for sequence Acropora_loripes
error

@ChillarAnand
Copy link

Does the downloaded fasta file has taxid?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants