Unsuccesful installation #1
Description
Hi,
Thank you for adding this package for repeat analysis.
I tried to install this on Centos6, in a conda environment (python=3.6.3).
I got the following error:
/user/ RepeatDetector/cmake/tests/TestSuite.cmake
Then, I tried the same on Mac OS X, Big Sur
I got the following error:
/user/ RepeatDetector/cmake/tests/TestSuite.cmake
I tried to install this on Centos7, in a conda environment (python=3.6.3).
I got the following error:
-- +--------------------------------------------------------------------+
-- | RepeatDetecter |
-- +--------------------------------------------------------------------+
-- | (C) Copyright SIB Swiss Institute of Bioinformatics |
-- | Thierry Schuepbach (thierry.schuepbach@sib.swiss) |
-- | |
-- +--------------------------------------------------------------------+
-- Found Git: /usr/bin/git (found version "1.8.3.1")
fatal: Needed a single revision
-- This is patch version
-- Compilation on architecture x86_64.
-- testing flag -msse4.1...
-- Add -std=c99 to C compiler options
-- Add SSE2 to C compiler options
-- Perl found - full test suite usable
-- Found data directory in /data/wheeler_lab/2022/RepeatDetector/data
-- Found utils directory in /data/wheeler_lab/2022/RepeatDetector/utils
-- libprf found in /data/wheeler_lab/2022/libprf
-- GIT version a2b1923
-- Gtest is in /data/wheeler_lab/2022/RepeatDetector/build/external/gtest/src/gtest
-- Compilation on architecture x86_64.
-- testing flag -msse4.1...
-- Add -std=c99 to C compiler options
-- Add SSE2 to C compiler options
-- Perl found - full test suite usable
-- This is the install RPATH : /usr/local/lib
-- Unable to determine HDF5 C flags from HDF5 wrapper.
-- Unable to determine HDF5 C version from HDF5 wrapper.
-- Found HDF5: /usr/lib64/libhdf5.so
-- HDF5 library found
-- HTS lib is required to compile PBBAM, trying downloading
-- htslib downloaded into /data/wheeler_lab/2022/RepeatDetector/build/external/htslib/src/htslib
CMake Error at /data/wheeler_lab/ALAN/SMRTLINK3/share/cmake-3.9/Modules/FindBoost.cmake:1253 (file):
file STRINGS file "/usr/include/boost/version.hpp" cannot be read.
Call Stack (most recent call first):
/data/wheeler_lab/2022/libprf/cmake/build_internal_pbbam.cmake:51 (FIND_PACKAGE)
/data/wheeler_lab/2022/libprf/CMakeLists.txt:318 (INCLUDE)
-- Boost version: 0.0.0
-- Boost 1.6 or higher is required to compile PBBAM, trying downloading
-- Boost downloaded into /data/wheeler_lab/2022/RepeatDetector/build/external/Boost/src/Boost
-- PBBam not found on the system, downloading from GitHub...
-- PBBam built in /data/wheeler_lab/2022/RepeatDetector/build/external/pbbam
-- Found data directory in /data/wheeler_lab/2022/libprf/data
-- Found utils directory in /data/wheeler_lab/2022/libprf/utils
CMake Error at src/CMakeLists.txt:50 (INCLUDE):
INCLUDE could not find load file:
**/RepeatDetector/cmake/tests/TestSuite.cmake**
-- Configuring incomplete, errors occurred!
See also "/data/wheeler_lab/2022/RepeatDetector/build/CMakeFiles/CMakeOutput.log".
See also "/data/wheeler_lab/2022/RepeatDetector/build/CMakeFiles/CMakeError.log".
Could you let me know how to fix this please?
Thanks
Alan