Params_5.txt

# Refinement(s) on/off (1 - yes, 0 -no)
electrode_refinement = 0
depth_refinement = 0
planar_refinement = 1
cuboid_refinement = 0
sphere_refinement = 0

# Standard refinement parameters
facet_angle_deg = 30.000
facet_distance_mm = 2.000
cell_radius_edge_ratio = 3.000
cell_coarse_size_mm = 5.000

# Electrode refinement
electrode_radius_mm = 5.000
cell_size_electrodes_mm = 2.000

# Depth refinement
cell_fine_size_mm = 2.000
elements_with_fine_sizing_field_percentage = 10.000

# Planar refinement - also uses parameters from depth
height = 0.000
# Dimension x = 1, y = 2, z = 3 
planar_direction_xyz = 3.000

# Spherical refinement
# Distances in mm
sphere_radius = 20.000
sphere_centre_x = 60.00
sphere_centre_y = 50.00
sphere_centre_z = 60.00
sphere_cell_size = 2.000

# cuboid refinement
cuboid_x_extent = 30.000
cuboid_y_extent = 10.000
cuboid_z_extent = 10.000
cuboid_centre_x = 60.00
cuboid_centre_y = 50.200
cuboid_centre_z = 60.900
cuboid_cell_size = 2

# Optimisation (1 - yes, 0 - no)
lloyd_opt = 0
odt_opt = 0
exude_opt = 0
perturb_opt = 0
time_limit_sec = 300

# Save a vtu file of the mesh?
save_vtk = 1
# Save cell centres as csv?
save_cell_centres = 0
# Save nodes and tetra as csv?
save_nodes_tetra = 0

# Deform the mesh?
do_deformation = 0
deform_x = 0.000
deform_y = 0.000
deform_z = 0.000
num_deformations = 5
min_stretch_distance = 5.000
max_stretch_distance = 50.000

# Move electrodes to the closest facet in the mesh? Useful is electrodes not exactly on the mesh
# Will move electrode to the nearest facet with tissue type equal to outermost_tissue
move_electrodes = 0
outermost_tissue = 1