Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

individualCount=0 while occurrenceStatus=present, not picked up #74

Open
cyrilrader opened this issue Feb 27, 2025 · 1 comment
Open
Assignees

Comments

@cyrilrader
Copy link
Contributor

When making a QC on this dataset: http://ipt.medobis.eu/archive.do?r=dori it has been noticed that an issue is not picked up by the tool. The issue is the fact that one occurrence has individualCount=0 while occurrenceStatus=present which doesn't make sense.
Need to be investigated if it's a bug or if the tool is lacking a check for those type of issues.

@cyrilrader cyrilrader self-assigned this Feb 27, 2025
@rubenpp7
Copy link
Collaborator

that check does not exist, we only perform it for eMoFs by creating the BODCquantity object, defined in

BODCquantity <- c('http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL07/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL08/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL09/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL10/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL12/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL13/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL14/',
'http://vocab.nerc.ac.uk/collection/P01/current/SACFORN1/',
'http://vocab.nerc.ac.uk/collection/P01/current/SACFOR01/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL01/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL02/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL03/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL04/',
'http://vocab.nerc.ac.uk/collection/P01/current/SDBIOL05/',
'http://vocab.nerc.ac.uk/collection/P01/current/ADBIOL01/',
'http://vocab.nerc.ac.uk/collection/P01/current/ADBIOL02/',
'http://vocab.nerc.ac.uk/collection/P01/current/ODRYBM01/',
'http://vocab.nerc.ac.uk/collection/P01/current/OWETBM01/',
'http://vocab.nerc.ac.uk/collection/P01/current/OCOUNT01/',
'http://vocab.nerc.ac.uk/collection/P01/current/USPBIOSV/',
'http://vocab.nerc.ac.uk/collection/P01/current/WWBMM00Z/')

adding a check between individualCount and occurrenceStatus shoudl be quite easy :)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants