diff --git a/.github/workflows/wdl_checker.yml b/.github/workflows/wdl_checker.yml new file mode 100644 index 0000000..f01f235 --- /dev/null +++ b/.github/workflows/wdl_checker.yml @@ -0,0 +1,28 @@ +name: MiniWDL linter CI + +on: + push: + workflow_dispatch: + +jobs: + run-miniwdl: + runs-on: ubuntu-latest + + steps: + - name: Checkout repository + uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: '3.8' # specify the Python version you need + + - name: Install MiniWDL + run: | + python -m pip install --upgrade pip + pip install miniwdl + + - name: Run MiniWDL + run: | + # Add the commands to run your MiniWDL workflow + miniwdl run wdl/metaMS.wdl -i wdl/metams_input.json --verbose --no-cache --copy-input-files \ No newline at end of file