setup.py

import os
import re
from pathlib import Path

from setuptools import find_packages, setup

NAME = "accession"
PACKAGES = find_packages()
META_PATH = Path("accession", "__init__.py")
PROJECT_URLS = {
    "Documentation": "https://accession.readthedocs.io/en/latest/",
    "Source Code": "https://github.com/ENCODE-DCC/accession",
    "Issue Tracker": "https://github.com/ENCODE-DCC/accession/issues",
}
CLASSIFIERS = [
    "License :: OSI Approved :: MIT License",
    "Natural Language :: English",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.6",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
]
INSTALL_REQUIRES = [
    "SQLAlchemy==1.3.17",
    "attrs",
    "protobuf==3.20.1",
    "boto3==1.17.108",
    "caper==1.5.1",
    "encode_utils==2.10.0",
    "flatdict==4.0.1",
    "google-api-core==1.21.0",
    "google-auth==1.18.0",
    "google-cloud-storage==1.28.1",
    "google-cloud-tasks==1.5.0",
    "miniwdl==0.8.2",
    "qc_utils==20.9.1",
    "typing-extensions==3.7.4.2",
]
EXTRAS_REQUIRE = {
    "docs": ["sphinx"],
    "tests": ["pytest", "pytest-cov", "pytest-mock==3.6.1", "docker", "requests"],
}
EXTRAS_REQUIRE["dev"] = (
    EXTRAS_REQUIRE["docs"]
    + EXTRAS_REQUIRE["tests"]
    + ["pre-commit", "sqlalchemy-stubs==0.3", "boto3-stubs[s3]"]
)
HERE = os.path.abspath(os.path.dirname(__file__))


def read(*parts):
    """
    Build an absolute path from *parts* and and return the contents of the
    resulting file.  Assume UTF-8 encoding.
    """
    with Path(HERE, *parts).open(encoding="utf-8") as f:
        return f.read()


META_FILE = read(META_PATH)


def find_meta(meta):
    """
    Extract __*meta*__ from META_FILE.
    """
    meta_match = re.search(
        r"^__{meta}__ = ['\"]([^'\"]*)['\"]".format(meta=meta), META_FILE, re.M
    )
    if meta_match:
        return meta_match.group(1)
    raise RuntimeError("Unable to find __{meta}__ string.".format(meta=meta))


VERSION = find_meta("version")
URL = find_meta("url")
LONG = read("README.rst")
DESCRIPTION = find_meta("description")
LICENSE = find_meta("license")
AUTHOR = find_meta("author")
EMAIL = find_meta("email")


setup(
    name=NAME,
    version=VERSION,
    packages=PACKAGES,
    license=LICENSE,
    author=AUTHOR,
    author_email=EMAIL,
    description=DESCRIPTION,
    long_description=LONG,
    long_description_content_type="text/x-rst",
    url=URL,
    project_urls=PROJECT_URLS,
    classifiers=CLASSIFIERS,
    install_requires=INSTALL_REQUIRES,
    extras_require=EXTRAS_REQUIRE,
    # Python 3.6 or higher required for f-strings and attrs
    python_requires=">=3.6",
    # Specific to accessioning code
    entry_points={"console_scripts": ["accession=accession.__main__:main"]},
    zip_safe=False,
    # Include all JSON files in accession_steps "package"
    package_data={"accession_steps": ["*.json"]},
)