qc_final.log

PLINK v1.90b7.1 64-bit (18 Oct 2023)
Options in effect:
  --bfile qc
  --make-bed
  --out qc_final
  --remove-fam related.txt

Hostname: Alejandros-MacBook-Air.local
Working directory: /Users/efra/Documents/LCG/5th/Statistical Genetics/gh/StatisticalGenomics/Project
Start time: Tue Nov 14 22:45:22 2023

Random number seed: 1700023522
24576 MB RAM detected; reserving 12288 MB for main workspace.
382054 variants loaded from .bim file.
1375 people (920 males, 455 females) loaded from .fam.
1375 phenotype values loaded from .fam.
--remove-fam: 1374 people remaining.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 1374 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate in remaining samples is 0.992073.
382054 variants and 1374 people pass filters and QC.
Among remaining phenotypes, 707 are cases and 667 are controls.
--make-bed to qc_final.bed + qc_final.bim + qc_final.fam ... done.

End time: Tue Nov 14 22:45:23 2023