smrtsv

#!/usr/bin/env bash

# Launch SMRT-SV using executables in the "dep" directory.

# Get directory where the script is located
SOURCE="${BASH_SOURCE[0]}"

while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
  DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
  SOURCE="$(readlink "$SOURCE")"
  [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
done

SOURCE_DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"


# Launch
export LC_COLLATE=C

${SOURCE_DIR}/dep/bin/python3 ${SOURCE_DIR}/smrtsv.py "$@"