diff --git a/README.md b/README.md index ad2df4806..2ccf76ef9 100644 --- a/README.md +++ b/README.md @@ -186,6 +186,8 @@ Install it the [bioconda](https://anaconda.org/bioconda/get_pangenes) way: conda activate bioconda conda create -n get_pangenes -c conda-forge -c bioconda get_pangenes conda activate get_pangenes + # or simply + conda install bioconda::get_pangenes Install it the compilation way: diff --git a/pangenes/README.md b/pangenes/README.md index 702d45577..a5886f4c7 100644 --- a/pangenes/README.md +++ b/pangenes/README.md @@ -33,7 +33,7 @@ and produces different types of output: - [From pairs of genes to clusters](#from-pairs-of-genes-to-clusters) - [Parameters](#parameters) - [Dependencies and installation](#dependencies-and-installation) - - [Runmodes and HPC configuration](#runmodes-and-hpc-configuration) + - [Runmodes and HPC configuration](#runmodes-and-hpc-configuration) - [Command-line options](#command-line-options) - [Input file format](#input-file-format) - [Example 1: default core pangene set analysis](#example-1-default-core-pangene-analysis-and-hpc-settings) @@ -180,12 +180,17 @@ Here I list the most important ones, they can be changed by editing the script s ### Dependencies and installation -To install it via [bioconda](https://anaconda.org/bioconda/get_pangenes) try: +To install it via [bioconda](https://anaconda.org/bioconda/get_pangenes) you can try: conda activate bioconda conda create -n get_pangenes -c conda-forge -c bioconda get_pangenes conda activate get_pangenes + # or simply + conda install bioconda::get_pangenes + +The bioconda recipe can be found [here](https://github.com/bioconda/bioconda-recipes/tree/master/recipes/get_pangenes). + Alternatively you can compile it from source, which in addition to Perl requires: * https://github.com/lh3/minimap2