`biobox`

Description

Tools for bioinformatics, many of which are also used in the text book Bioinformatics for Evolutionary Biologists by Bernhard Haubold and Angelika Börsch-Haubold.

Author

Bernhard Haubold, haubold@evolbio.mpg.de

Windows/Ubuntu

Install Windows Subsystem for Linux
Clone repo and install additional packages

git clone https://github.com/evolbioinf/biobox
cd biobox
bash scripts/setup.sh
Make package

make

The directory bin should now contain the programs listed in progs.txt

macOS

Install X-Code

xcode-select --install
Install Homebrew
Install packages

brew tap brewsci/bio
brew install brewsci/bio/libdivsufsort git gnuplot golang graphviz gsl tcl-tk xquartz
git clone https://github.com/evolbioinf/biobox
cd biobox
Make package

make

The directory bin should now contain the programs listed in progs.txt

License

GNU General Public License