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Commits on Nov 22, 2018

• added flag to build esa vector with constant 64bit

  apirogov

  committedNov 22, 2018
  7b5ef00

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Commits on Nov 20, 2018

• add the fixes for Mac compilation

  apirogov

  committedNov 20, 2018
  f599ba0

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Commits on Jul 6, 2018

• silently reduce too high number of threads. try to fix compile error

  apirogov

  committedJul 6, 2018
  277fde8

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Commits on Jul 5, 2018

• experimental support for parallel divsufsort

  apirogov

  committedJul 5, 2018
  4171b4f

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Commits on May 17, 2018

• fixed compile error for new g++ and removed redundant tab

  apirogov

  committedMay 17, 2018
  6bae231

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Commits on Apr 3, 2017

• fix reading fasta from stdin

  apirogov

  committedApr 3, 2017
  ea27ba8

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Commits on Nov 7, 2016

• fixed underflow bug in complexity calculation

  

  Anton Pirogov

  committedNov 7, 2016
  d76413c

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Commits on Oct 31, 2016

• Improved error handling for batch input

  

  Anton Pirogov

  committedOct 31, 2016
  1cfdce8

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• don't give up if a task fails, infer index file

  

  Anton Pirogov

  committedOct 31, 2016
  d6ba83b

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Commits on Oct 24, 2016

• rename

  

  Anton Pirogov

  committedOct 24, 2016
  83e04ae

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• fixed help message

  

  Anton Pirogov

  committedOct 24, 2016
  1e78fd2

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Commits on Oct 10, 2016

• updated readme

  

  Anton Pirogov

  committedOct 10, 2016
  5b1cec1

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Commits on Oct 7, 2016

• add seek before switching between in and output for standard compliance

  

  Anton Pirogov

  committedOct 7, 2016
  ab2b68c

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Commits on Oct 6, 2016

• Regions are adressed by name now, added renaming option -r

  

  Anton Pirogov

  committedOct 6, 2016
  a028d14

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• Refactored, allow region renaming

  

  Anton Pirogov

  committedOct 6, 2016
  9f92a06

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• Truncate sequence names, demand unique seq names

  

  Anton Pirogov

  committedOct 6, 2016
  8c82b53

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Commits on Sep 23, 2016

• fix overestimation for short sequences

  

  Anton Pirogov

  committedSep 23, 2016
  37878a8

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• fixed nan in binomial (long long -> double), again removed GSL dep

  

  Anton Pirogov

  committedSep 23, 2016
  c7bed47

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• Fixed shulen computation

  haubold

  committedSep 23, 2016
  f41c011

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Commits on Aug 3, 2016

• Small edit of README.md

  haubold

  committedAug 3, 2016
  c97793a

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• Edited README

  haubold

  committedAug 3, 2016
  9f31c8a

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Commits on Aug 1, 2016

• remove GSL dependency, write README

  

  Anton Pirogov

  committedAug 1, 2016
  733563d

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Commits on Jul 25, 2016

• output 3 columns

  

  Anton Pirogov

  committedJul 25, 2016
  297a611

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• fix typo that made offsets wrong in output

  

  Anton Pirogov

  committedJul 25, 2016
  04f3d90

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Commits on Jul 8, 2016

• remove bloat, add batch mode

  

  Anton Pirogov

  committedJul 8, 2016
  d92c752

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Commits on Jun 30, 2016

• fix underflow caused by unsigned long in numBad

  

  Anton Pirogov

  committedJun 30, 2016
  71629e4

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Commits on Jun 22, 2016

• fixed numbad stuff (hopefully)

  

  Anton Pirogov

  committedJun 22, 2016
  98da5f9

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Commits on Jun 19, 2016

• Only compute ML-Factors on first strand

  

  Anton Pirogov

  committedJun 19, 2016
  3361d63

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• some cleanup, now wrap output of ML-factors with -p

  

  Anton Pirogov

  committedJun 19, 2016
  2f9a858

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Commits on Jun 16, 2016

• removed run stuff, speed up index loading

  

  Anton Pirogov

  committedJun 16, 2016
  ec640c6

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Commits on Jun 13, 2016

• Improved makefile, updated readme

  

  Anton Pirogov

  committedJun 13, 2016
  f1ba40d

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Commits on Jun 12, 2016

• prevent other unnecessary push_back copies

  

  Anton Pirogov

  committedJun 12, 2016
  102c819

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Commits on Jun 9, 2016

• make RMQ return index instead of value, make USE_SDSL a compile-time option

  

  Anton Pirogov

  committedJun 9, 2016
  453839d

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• add magic header to index file to detect invalid input files early

  

  Anton Pirogov

  committedJun 9, 2016
  8c7f0dc

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Commits on Jun 8, 2016

• switch back to own RMQ, but with int_vector

  

  Anton Pirogov

  committedJun 8, 2016
  8c594db

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