setup.py

"""A setuptools based setup module.

See:
https://packaging.python.org/en/latest/distributing.html
https://github.com/pypa/sampleproject
"""

import setuptools
from codecs import open
from os import path
import versioneer


# class PyTest(TestCommand):
#     def initialize_options(self):
#         TestCommand.initialize_options(self)
#         self.pytest_args = ["--verbose", "tests/tests.py"]
#
#     def finalize_options(self):
#         TestCommand.finalize_options(self)
#         self.test_args = []
#         self.test_suite = True
#
#     def run_tests(self):
#         import pytest
#         errno = pytest.main(self.pytest_args)
#         sys.exit(errno)


here = path.abspath(path.dirname(__file__))

# Get the long description from the README file
with open(path.join(here, 'README.md'), encoding='utf-8') as f:
    long_description = f.read()

requirements_f = open('requirements.txt', 'r')
dependencies = [req for req in requirements_f.readlines()]

setuptools.setup(
    name='plantcv',

    # Versions should comply with PEP440.  For a discussion on single-sourcing
    # the version across setup.py and the project code, see
    # https://packaging.python.org/en/latest/single_source_version.html
    version=versioneer.get_version(),

    description='An image processing package for plant phenotyping.',
    long_description=long_description,
    long_description_content_type='text/markdown',

    # The project's main homepage.
    url='http://plantcv.danforthcenter.org',

    # Author details
    author='The PlantCV team',
    author_email='plantcv@danforthcenter.org',

    # Choose your license
    license='MIT',

    # Supported platforms
    platforms=['Any'],

    # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
    classifiers=[
        # How mature is this project? Common values are
        #   3 - Alpha
        #   4 - Beta
        #   5 - Production/Stable
        'Development Status :: 5 - Production/Stable',

        # Indicate who your project is intended for
        'Intended Audience :: Science/Research',
        'Topic :: Scientific/Engineering :: Bio-Informatics',

        # Pick your license as you wish (should match "license" above)
        'License :: OSI Approved :: MIT License',

        # Specify the Python versions you support here. In particular, ensure
        # that you indicate whether you support Python 2, Python 3 or both.
        'Programming Language :: Python :: 2',
        'Programming Language :: Python :: 2.7',
        'Programming Language :: Python :: 3',
        'Programming Language :: Python :: 3.6',
        'Programming Language :: Python :: 3.7'
    ],

    # What does your project relate to?
    keywords='plant phenotyping bioinformatics',

    # You can just specify the packages manually here if your project is
    # simple. Or you can use find_packages().
    packages=setuptools.find_packages(),

    # Alternatively, if you want to distribute just a my_module.py, uncomment
    # this:
    #   py_modules=["my_module"],

    # List run-time dependencies here.  These will be installed by pip when
    # your project is installed. For an analysis of "install_requires" vs pip's
    # requirements files see:
    # https://packaging.python.org/en/latest/requirements.html
    install_requires=dependencies,

    # List additional groups of dependencies here (e.g. development
    # dependencies). You can install these using the following syntax,
    # for example:
    # $ pip install -e .[dev,test]
    # extras_require={
    #     'test': ['pytest-runner', 'pytest'],
    # },
    setup_requires=["pytest-runner"],
    tests_require=['pytest'],
    cmdclass=versioneer.get_cmdclass(),
    scripts=["plantcv-train.py", "plantcv-utils.py", "plantcv-workflow.py"]

    # If there are data files included in your packages that need to be
    # installed, specify them here.  If using Python 2.6 or less, then these
    # have to be included in MANIFEST.in as well.
    # package_data={
    #     'sample': ['package_data.dat'],
    # },

    # Although 'package_data' is the preferred approach, in some case you may
    # need to place data files outside of your packages. See:
    # http://docs.python.org/3.4/distutils/setupscript.html#installing-additional-files # noqa
    # In this case, 'data_file' will be installed into '<sys.prefix>/my_data'
    # data_files=[('my_data', ['data/data_file'])],

    # To provide executable scripts, use entry points in preference to the
    # "scripts" keyword. Entry points provide cross-platform support and allow
    # pip to create the appropriate form of executable for the target platform.
    # entry_points={
    #     'console_scripts': [
    #         'sample=sample:main',
    #     ],
    # },
)