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rmoo - R Multi-Objective Optimization

R build status Codecov test coverage CRAN status Lifecycle: stable

Overview

rmoo is a non-dominated sorting based multi-objective optimization package built upon the ‘GA’ package. It provides a comprehensive, flexible, and modular framework for multi/many-objective optimization. Users have a wide range of configuration options at their disposal, including the representation of real-values, permutations, and binaries.

The algorithms available in rmoo include GA, NSGA-I, NSGA-II, R-NSGA-II, and NSGA-III.

Installation

You can install the stable version on R CRAN:

install.packages("rmoo")

Or you can install the development version from GitHub:

# install.packages("devtools")
devtools::install_github("Evolutionary-Optimization-Laboratory/rmoo")

Usage

All the algorithms implemented in rmoo are called throught rmoo function. It will receive all the necessary parameters for execution. In this simple example, we solve the DTLZ1 problem, using the NSGA-III:

library(rmoo)

DTLZ1 <- function (x, nobj = 3, ...) 
{
    if (is.null(dim(x))) {
        x <- matrix(x, 1)
    }
    n <- ncol(x)
    y <- matrix(x[, 1:(nobj - 1)], nrow(x))
    z <- matrix(x[, nobj:n], nrow(x))
    g <- 100 * (n - nobj + 1 + rowSums((z - 0.5)^2 - cos(20 * 
        pi * (z - 0.5))))
    tmp <- t(apply(y, 1, cumprod))
    tmp <- cbind(t(apply(tmp, 1, rev)), 1)
    tmp2 <- cbind(1, t(apply(1 - y, 1, rev)))
    f <- tmp * tmp2 * 0.5 * (1 + g)
    return(f)
}

ref_points <- generate_reference_points(3,12)

result <- rmoo(fitness = DTLZ1,
               type = "real-valued",
               algorithm = "NSGA-III",
               lower = c(0,0,0),
               upper = c(1,1,1),
               monitor = FALSE,
               summary = FALSE,
               parallel = FALSE,
               nObj = 3,
               reference_dirs = ref_points,
               popSize = 92,
               maxiter = 300)

The rmoo package has a set of S4 method that can help the user to visualize, analysis, and interpret the results.

We are going to show how use the plot method, since depending on the parameter it will display difference plots, e.g. passing “pcp” as parameter for type, the method displays the Parallel Coordinate Plot:

plot(result, type="pcp")

Another example of plot method is when no parameters are passed, the method by default display the scatter plot. It evaluates the result dimensionality and depending on this, it will display 2-D, 3-D or Pairwise Scatter Plot.

#Scatter without optimal points
plot(result)

When displaying the scatter plot, reference points can be passed as parameters of the optimal argument, allowing the results to be compared to them:

#Scatter with optimal points (Using reference points as optimal points)
plot(result, optimal = result@reference_points)

Other plots available in rmoo are heatmap and polar coordinate, both allow the user to view specific solutions.

#Polar Coordinates
plot(result, type="polar", individual = c(1:3))

#Heatmap Plot
plot(result, type="heatmap", individual = c(1:3))

Other methods available in rmoo that may be of interest are getFitness(), getPopulation(), getMetrics(), print(), summary() and others. We do not show the functionality of all these functions since they will be detailed in depth in the future article and vignettes.

Citation

Until the submission of the formal article that introduces rmoo, please cite using:

Benitez F., Pinto-Roa Diego P. (2023). rmoo: Multi-Objective Optimization in R. R package version 0.2.3 https://CRAN.R-project.org/package=rmoo/.

BibTeX entries for LaTeX users:

@Manual{,
    title = {{rmoo}: Multi-Objective Optimization in R},
    author = {Francisco Benitez and Diego P. {Pinto-Roa}},
    year = {2023},
    note = {R package version 0.2.3},
    url = {https://CRAN.R-project.org/package=rmoo/},
}

or

@INPROCEEDINGS{10418638,
    author={Francisco, J. Benítez and Diego, P. Pinto-Roa and Miguel, García-Torres and Parameshachari, B. D.},
    booktitle={2023 IEEE CHILEAN Conference on Electrical, Electronics Engineering, Information and Communication Technologies (CHILECON)}, 
    title={A Hybrid Approach for Many-Objective Feature Selection in Intrusion Detection on Windows Operating Systems}, 
    year={2023},
    volume={},
    number={},
    pages={1-6},
    doi={10.1109/CHILECON60335.2023.10418638/}}