From 2c1d8e3c18c936124b45fa33bf7d2cc7fbe743a2 Mon Sep 17 00:00:00 2001
From: Peter Harrison <peter@ebi.ac.uk>
Date: Thu, 2 Feb 2017 12:45:57 +0000
Subject: [PATCH] Update manifest and remove unrequired XML tests

---
 MANIFEST                          |  27 ----
 t/XMLsample_loader.t              |  20 ---
 t/XMLsampleset_loader.t           |  20 ---
 t/data/XML/sample_bad.xml         |  91 --------------
 t/data/XML/sample_good.xml        |  95 --------------
 t/data/XML/sampleset_bad.xml      | 141 ---------------------
 t/data/XML/sampleset_good.xml     | 197 ------------------------------
 t/test_out.experimentset.bad.xlsx | Bin 9731 -> 0 bytes
 t/test_out.sampleset.bad.xlsx     | Bin 10490 -> 0 bytes
 t/test_out.sampleset.good.xlsx    | Bin 10175 -> 0 bytes
 10 files changed, 591 deletions(-)
 delete mode 100755 t/XMLsample_loader.t
 delete mode 100755 t/XMLsampleset_loader.t
 delete mode 100644 t/data/XML/sample_bad.xml
 delete mode 100644 t/data/XML/sample_good.xml
 delete mode 100644 t/data/XML/sampleset_bad.xml
 delete mode 100644 t/data/XML/sampleset_good.xml
 delete mode 100644 t/test_out.experimentset.bad.xlsx
 delete mode 100644 t/test_out.sampleset.bad.xlsx
 delete mode 100644 t/test_out.sampleset.good.xlsx

diff --git a/MANIFEST b/MANIFEST
index 9e4bbe1a..58d261e2 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -2,13 +2,6 @@
 Build.PL
 cpanfile
 cpanfile.snapshot
-json_schemas/Experiment.schema.08012016.json
-json_schemas/Experiment.schema.26012016.json
-json_schemas/Experiment.schema.dev.json
-json_schemas/Experiment.schema.json
-json_schemas/Sample.schema.1603.json
-json_schemas/Sample.schema.dev.json
-json_schemas/Sample.validonor.json
 lib/.perltidyrc
 lib/.ship.conf
 lib/.travis.yml
@@ -87,8 +80,6 @@ t/data/test_data.json
 t/data/test_good_rule_set.json
 t/data/test_good_rule_set_with_cons_check.json
 t/data/test_out.sample.xlsx
-t/data/TSV/sample.tsv
-t/data/TSV/sampleset.tsv
 t/data/XML/experiment_good.xml
 t/data/XML/experiment_good_noroot.xml
 t/data/XML/experimentset_bad.xml
@@ -96,10 +87,6 @@ t/data/XML/primary_cell.sampleset_bad.xml
 t/data/XML/primary_cell.sampleset_good.xml
 t/data/XML/primary_tissue.sampleset_bad.xml
 t/data/XML/primary_tissue.sampleset_good.xml
-t/data/XML/sample_bad.xml
-t/data/XML/sample_good.xml
-t/data/XML/sampleset_bad.xml
-t/data/XML/sampleset_good.xml
 t/Excel/createSampleTab.t
 t/Excel/XLSXBioSampleset_loader.t
 t/faang_breed_checks.t
@@ -107,28 +94,14 @@ t/loader.t
 t/object_creation.t
 t/ols_lookup.t
 t/prototype_script.t
-t/test_out.experimentset.bad.xlsx
-t/test_out.sampleset.bad.xlsx
-t/test_out.sampleset.good.xlsx
-t/TSVsample_loader.t
-t/TSVsampleset_loader.t
 t/validate_attributes.t
 t/validate_primarycell_bad.t
 t/validate_primarycell_good.t
 t/validate_primarytissue_bad.t
 t/validate_primarytissue_good.t
-t/validate_xml_experiment.t
-t/validate_xml_root.t
-t/validate_xml_experimentset.t
-t/validate_xml_sample.bad.t
-t/validate_xml_sample.good.t
-t/validate_xml_sampleset.bad.t
-t/validate_xml_sampleset.good.t
 t/validator.t
 t/XMLexperiment_loader.t
 t/XMLexperimentset_loader.t
-t/XMLsample_loader.t
-t/XMLsampleset_loader.t
 web/dev.sh
 web/public/biosamples_template.xlsx
 web/public/css/site.css
diff --git a/t/XMLsample_loader.t b/t/XMLsample_loader.t
deleted file mode 100755
index 34ed3bf4..00000000
--- a/t/XMLsample_loader.t
+++ /dev/null
@@ -1,20 +0,0 @@
-#!/usr/bin/env perl
-use strict;
-use warnings;
-
-use FindBin qw/$Bin/;
-use lib "$Bin/../lib";
-
-use Bio::Metadata::Loader::XMLSampleLoader;
-use Data::Dumper;
-use Test::More;
-
-my $data_dir = "$Bin/data";
-
-my $loader = Bio::Metadata::Loader::XMLSampleLoader->new();
-
-my $o=$loader->load("$data_dir/XML/sample_good.xml");
-
-isa_ok($o, "ARRAY");
-
-done_testing();
diff --git a/t/XMLsampleset_loader.t b/t/XMLsampleset_loader.t
deleted file mode 100755
index b23b127d..00000000
--- a/t/XMLsampleset_loader.t
+++ /dev/null
@@ -1,20 +0,0 @@
-#!/usr/bin/env perl
-use strict;
-use warnings;
-
-use FindBin qw/$Bin/;
-use lib "$Bin/../lib";
-
-use Bio::Metadata::Loader::XMLSampleLoader;
-use Data::Dumper;
-use Test::More;
-
-my $data_dir = "$Bin/data";
-
-my $loader = Bio::Metadata::Loader::XMLSampleLoader->new();
-
-my $o=$loader->load("$data_dir/XML/sampleset_good.xml");
-
-isa_ok($o, "ARRAY");
-
-done_testing();
diff --git a/t/data/XML/sample_bad.xml b/t/data/XML/sample_bad.xml
deleted file mode 100644
index 7ad99067..00000000
--- a/t/data/XML/sample_bad.xml
+++ /dev/null
@@ -1,91 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ROOT request="download accessions">
-    <SAMPLE alias="S00TXX11">
-        <TITLE>S00TXX11</TITLE>
-        <SAMPLE_NAME>
-            <TAXON_ID>9606</TAXON_ID>
-            <SCIENTIFIC_NAME>Homo sapiens</SCIENTIFIC_NAME>
-            <COMMON_NAME>human</COMMON_NAME>
-            <ANONYMIZED_NAME>B270_7</ANONYMIZED_NAME>
-        </SAMPLE_NAME>
-        <DESCRIPTION>Dendritic cells samples from blood of healthy donor</DESCRIPTION>
-        <SAMPLE_ATTRIBUTES>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>subject_id</TAG>
-                <VALUE>B270_7</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>MOLECULE</TAG>
-                <VALUE>RNA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DISEASE</TAG>
-                <VALUE>None</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>BIOMATERIAL_PROVIDER</TAG>
-                <VALUE>Sanquin_Nijmegen</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>BIOMATERIAL_TYPE</TAG>
-                <VALUE>Primary Cell</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>TISSUE_TYPE</TAG>
-                <VALUE>venous blood</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>MARKERS</TAG>
-                <VALUE>CD14 positive</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_ID</TAG>
-                <VALUE>B270_7</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_AGE</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_HEALTH_STATUS</TAG>
-                <VALUE>Healthy</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_SEX</TAG>
-                <VALUE>Unknown</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>gender</TAG>
-                <VALUE>unknown</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_ETHNICITY</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>PASSAGE_IF_EXPANDED</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>SAMPLE_ONTOLOGY_URI</TAG>
-                <VALUE>http://purl.obolibrary.org/obo/CL_0001056</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>TISSUE_DEPOT</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DISEASE_ONTOLOGY_URI</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>TREATMENT</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>phenotype</TAG>
-                <VALUE>CL_0001056;UBERON_0013756</VALUE>
-            </SAMPLE_ATTRIBUTE>
-        </SAMPLE_ATTRIBUTES>
-    </SAMPLE>
-</ROOT> 
diff --git a/t/data/XML/sample_good.xml b/t/data/XML/sample_good.xml
deleted file mode 100644
index b442108b..00000000
--- a/t/data/XML/sample_good.xml
+++ /dev/null
@@ -1,95 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ROOT request="download accessions">
-    <SAMPLE alias="S00TXX11">
-        <TITLE>S00TXX11</TITLE>
-        <SAMPLE_NAME>
-            <TAXON_ID>9606</TAXON_ID>
-            <SCIENTIFIC_NAME>Homo sapiens</SCIENTIFIC_NAME>
-            <COMMON_NAME>human</COMMON_NAME>
-            <ANONYMIZED_NAME>B270_7</ANONYMIZED_NAME>
-        </SAMPLE_NAME>
-        <DESCRIPTION>Dendritic cells samples from blood of healthy donor</DESCRIPTION>
-        <SAMPLE_ATTRIBUTES>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>subject_id</TAG>
-                <VALUE>B270_7</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>MOLECULE</TAG>
-                <VALUE>total RNA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DISEASE</TAG>
-                <VALUE>None</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>BIOMATERIAL_PROVIDER</TAG>
-                <VALUE>Sanquin_Nijmegen</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>BIOMATERIAL_TYPE</TAG>
-                <VALUE>Primary Cell</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>CELL_TYPE</TAG>
-                <VALUE>dendritic cell</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>TISSUE_TYPE</TAG>
-                <VALUE>venous blood</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>MARKERS</TAG>
-                <VALUE>CD14 positive</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_ID</TAG>
-                <VALUE>B270_7</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_AGE</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_HEALTH_STATUS</TAG>
-                <VALUE>Healthy</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_SEX</TAG>
-                <VALUE>Unknown</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>gender</TAG>
-                <VALUE>unknown</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DONOR_ETHNICITY</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>PASSAGE_IF_EXPANDED</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>SAMPLE_ONTOLOGY_URI</TAG>
-                <VALUE>http://purl.obolibrary.org/obo/CL_0001056</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>TISSUE_DEPOT</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>DISEASE_ONTOLOGY_URI</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>TREATMENT</TAG>
-                <VALUE>NA</VALUE>
-            </SAMPLE_ATTRIBUTE>
-            <SAMPLE_ATTRIBUTE>
-                <TAG>phenotype</TAG>
-                <VALUE>CL_0001056;UBERON_0013756</VALUE>
-            </SAMPLE_ATTRIBUTE>
-        </SAMPLE_ATTRIBUTES>
-    </SAMPLE>
-</ROOT> 
diff --git a/t/data/XML/sampleset_bad.xml b/t/data/XML/sampleset_bad.xml
deleted file mode 100644
index 93587b89..00000000
--- a/t/data/XML/sampleset_bad.xml
+++ /dev/null
@@ -1,141 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-  <ROOT request="download accessions">
-  <SAMPLE_SET>
-    <SAMPLE alias="S011JHDN1" accession="ERS782319" center_name="BLUEPRINT" broker_name="EGA" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-      <IDENTIFIERS>
-        <PRIMARY_ID>ERS782319</PRIMARY_ID>
-        <SUBMITTER_ID namespace="BLUEPRINT">S011JHDN1</SUBMITTER_ID>
-      </IDENTIFIERS>
-      <TITLE>S011JHDN1</TITLE>
-      <SAMPLE_NAME>
-        <TAXON_ID>9606</TAXON_ID>
-        <SCIENTIFIC_NAME>Homo sapiens</SCIENTIFIC_NAME>
-        <COMMON_NAME>human</COMMON_NAME>
-        <ANONYMIZED_NAME>S011JH</ANONYMIZED_NAME>
-      </SAMPLE_NAME>
-      <DESCRIPTION>Blood samples (WGS) from donor S011JH</DESCRIPTION>
-      <SAMPLE_ATTRIBUTES>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DISEASE</TAG>
-          <VALUE>None</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>BIOMATERIAL_PROVIDER</TAG>
-          <VALUE>Pippo</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>BIOMATERIAL_TYPE</TAG>
-          <VALUE>Primary Tissue</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>TISSUE_TYPE</TAG>
-          <VALUE>Venous blood</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>TISSUE_DEPOT</TAG>
-          <VALUE>median cubital vein</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_ID</TAG>
-          <VALUE>S011JH</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_AGE</TAG>
-          <VALUE>50-55</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_HEALTH_STATUS</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_SEX</TAG>
-          <VALUE>Female</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_ETHNICITY</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>SAMPLE_ONTOLOGY_URI</TAG>
-          <VALUE>http://purl.obolibrary.org/obo/UBERON_0013756</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>phenotype</TAG>
-          <VALUE>UBERON_0013756</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>ENA-CHECKLIST</TAG>
-          <VALUE>ERC000026</VALUE>
-        </SAMPLE_ATTRIBUTE>
-      </SAMPLE_ATTRIBUTES>
-    </SAMPLE>
-    <SAMPLE alias="S00DQ0N2" accession="ERS782328" center_name="BLUEPRINT" broker_name="EGA" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-      <IDENTIFIERS>
-        <PRIMARY_ID>ERS782328</PRIMARY_ID>
-        <SUBMITTER_ID namespace="BLUEPRINT">S00DQ0N2</SUBMITTER_ID>
-      </IDENTIFIERS>
-      <TITLE>S00DQ0N2</TITLE>
-      <SAMPLE_NAME>
-        <TAXON_ID>9606</TAXON_ID>
-        <SCIENTIFIC_NAME>Homo sapiens</SCIENTIFIC_NAME>
-        <COMMON_NAME>human</COMMON_NAME>
-        <ANONYMIZED_NAME>S00DQ0</ANONYMIZED_NAME>
-      </SAMPLE_NAME>
-      <DESCRIPTION>Blood samples (WGS) from donor S00DQ0</DESCRIPTION>
-      <SAMPLE_ATTRIBUTES>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DISEASE</TAG>
-          <VALUE>None</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>BIOMATERIAL_PROVIDER</TAG>
-          <VALUE>NIHR Cambridge BioResource</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>BIOMATERIAL_TYPE</TAG>
-          <VALUE>Primary Cell</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>TISSUE_TYPE</TAG>
-          <VALUE>Venous blood</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>TISSUE_DEPOT</TAG>
-          <VALUE>median cubital vein</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_ID</TAG>
-          <VALUE>S00DQ0</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_AGE</TAG>
-          <VALUE>50- 55</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_HEALTH_STATUS</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_SEX</TAG>
-          <VALUE>Male</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_ETHNICITY</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>SAMPLE_ONTOLOGY_URI</TAG>
-          <VALUE>http://purl.obolibrary.org/obo/UBERON_0013756</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>phenotype</TAG>
-          <VALUE>UBERON_0013756</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>ENA-CHECKLIST</TAG>
-          <VALUE>ERC000026</VALUE>
-        </SAMPLE_ATTRIBUTE>
-      </SAMPLE_ATTRIBUTES>
-    </SAMPLE>
-  </SAMPLE_SET>
-</ROOT>
diff --git a/t/data/XML/sampleset_good.xml b/t/data/XML/sampleset_good.xml
deleted file mode 100644
index 08b499e0..00000000
--- a/t/data/XML/sampleset_good.xml
+++ /dev/null
@@ -1,197 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ROOT request="download accessions">
-  <SAMPLE_SET>
-    <SAMPLE alias="S011JHDN1" accession="ERS782319" center_name="BLUEPRINT" broker_name="EGA" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-      <IDENTIFIERS>
-        <PRIMARY_ID>ERS782319</PRIMARY_ID>
-        <SUBMITTER_ID namespace="BLUEPRINT">S011JHDN1</SUBMITTER_ID>
-      </IDENTIFIERS>
-      <TITLE>S011JHDN1</TITLE>
-      <SAMPLE_NAME>
-        <TAXON_ID>9606</TAXON_ID>
-        <SCIENTIFIC_NAME>Homo sapiens</SCIENTIFIC_NAME>
-        <COMMON_NAME>human</COMMON_NAME>
-        <ANONYMIZED_NAME>S011JH</ANONYMIZED_NAME>
-      </SAMPLE_NAME>
-      <DESCRIPTION>Blood samples (WGS) from donor S011JH</DESCRIPTION>
-      <SAMPLE_ATTRIBUTES>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>subject_id</TAG>
-          <VALUE>S011JH</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DISEASE</TAG>
-          <VALUE>None</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>BIOMATERIAL_PROVIDER</TAG>
-          <VALUE>NIHR Cambridge BioResource</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>BIOMATERIAL_TYPE</TAG>
-          <VALUE>Primary Tissue</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>MOLECULE</TAG>
-          <VALUE>genomic DNA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>TISSUE_TYPE</TAG>
-          <VALUE>Venous blood</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>TISSUE_DEPOT</TAG>
-          <VALUE>median cubital vein</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DISEASE_ONTOLOGY_URI</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_ID</TAG>
-          <VALUE>S011JH</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_AGE</TAG>
-          <VALUE>50-55</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_HEALTH_STATUS</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_SEX</TAG>
-          <VALUE>Female</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>gender</TAG>
-          <VALUE>female</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DONOR_ETHNICITY</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>SAMPLE_ONTOLOGY_URI</TAG>
-          <VALUE>http://purl.obolibrary.org/obo/UBERON_0013756</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>PASSAGE_IF_EXPANDED</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>COLLECTION_METHOD</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>phenotype</TAG>
-          <VALUE>UBERON_0013756</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>TREATMENT</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>ENA-CHECKLIST</TAG>
-          <VALUE>ERC000026</VALUE>
-        </SAMPLE_ATTRIBUTE>
-      </SAMPLE_ATTRIBUTES>
-    </SAMPLE>
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-        </SAMPLE_ATTRIBUTE>
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-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-        <SAMPLE_ATTRIBUTE>
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-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-          <VALUE>median cubital vein</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>DISEASE_ONTOLOGY_URI</TAG>
-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>gender</TAG>
-          <VALUE>male</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
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-        <SAMPLE_ATTRIBUTE>
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-        <SAMPLE_ATTRIBUTE>
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-          <VALUE>NA</VALUE>
-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>phenotype</TAG>
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-        <SAMPLE_ATTRIBUTE>
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-        </SAMPLE_ATTRIBUTE>
-        <SAMPLE_ATTRIBUTE>
-          <TAG>ENA-CHECKLIST</TAG>
-          <VALUE>ERC000026</VALUE>
-        </SAMPLE_ATTRIBUTE>
-      </SAMPLE_ATTRIBUTES>
-    </SAMPLE>
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