Switch to pixi package manager

Author: jennydaman

.dockerignore

@@ -10,3 +10,7 @@ Dockerfile
 LICENSE
 CHRIS_REMOTE_FS
 swift_storage
+
+dist/
+.pixi/
+

.gitattributes

@@ -0,0 +1,2 @@
+# GitHub syntax highlighting
+pixi.lock linguist-language=YAML linguist-generated=true

.github/workflows/ci.yml

@@ -38,26 +38,40 @@ jobs:
 
   build:
     needs: [test-pfcon, test-cube]
-    if: github.event_name == 'push' || github.event_name == 'release'
     runs-on: ubuntu-22.04
     steps:
     - uses: actions/checkout@v4
+    - name: Install pixi
+      id: install-pixi
+      if: startsWith(github.ref, 'refs/tags/v')
+      uses: prefix-dev/setup-pixi@v0.8.1
       with:
-        fetch-depth: "0"
+        pixi-version: v0.28.2
+    - name: Set version
+      id: set-version
+      if: steps.install-pixi.outcome == "success"
+      run:
+        ref_name='${{ github.ref_name }}'
+        version_number="${ref_name:1}"
+        pixi project version set "$version_number"
+        echo "LABEL org.opencontainers.image.version=\"$version_number\"" >> Dockerfile
+        echo "version=$version_number" >> "$GITHUB_OUTPUT"
     - name: Get build tags
       id: info
       shell: python
       run: |
         import os
         import itertools
 
-        short_sha = os.getenv('GITHUB_SHA', 'unknown')[:7]
+        commit_sha = '${{ github.sha }}'
+        short_sha = commit_sha[:7]
         git_refs = []
-        if os.getenv('GITHUB_REF', '').startswith('refs/tags/v'):
-            version_from_tag = os.getenv('GITHUB_REF')[11:]
-            git_refs.append(version_from_tag.replace('+', '.'))
+        version_number = '${{ steps.set-version.outputs.version }}'
+        if version_number:
+            sanitized_version_number = version_number.replace('+', '.')
+            git_refs.append(sanitized_version_number)
         registries = ['docker.io', 'ghcr.io']
-        repo = os.environ['GITHUB_REPOSITORY'].lower()
+        repo = '${{ github.repository }}'.lower()
         tags = ['latest'] + git_refs
         names = ','.join(''.join(c) for c in itertools.product(
             (r + '/' for r in registries),
@@ -69,24 +83,26 @@ jobs:
     - uses: docker/setup-qemu-action@v3
     - uses: docker/setup-buildx-action@v3
     - name: Login to DockerHub
+      id: login-dockerhub
+      if: github.event_name == 'push'
       uses: docker/login-action@v3
       with:
         username: ${{ secrets.DOCKERHUB_USERNAME }}
         password: ${{ secrets.DOCKERHUB_PASSWORD }}
     - name: Login to GitHub Container Registry
+      id: login-ghcr
+      if: github.event_name == 'push'
       uses: docker/login-action@v3
       with:
         registry: ghcr.io
         username: ${{ github.repository_owner }}
         password: ${{ secrets.GITHUB_TOKEN }}
 
     - name: Build and push
-      uses: docker/build-push-action@v5
+      uses: docker/build-push-action@v6
       with:
-        build-args: |
-          ENVIRONMENT=production
-          BUILD_VERSION=${{ github.ref_name }}
-        push: true
+        build-args: ENVIRONMENT=prod
+        push: ${{ steps.login-dockerhub.outcome }} == 'success' && ${{ steps.login-ghcr.outcome }} == 'success'
         context: .
         file: ./Dockerfile
         tags: "${{ steps.info.outputs.tags }}"

.gitignore

@@ -17,3 +17,7 @@
 dc.out
 CHRIS_REMOTE_FS/
 swift_storage/
+
+# pixi environments
+.pixi
+*.egg-info

Dockerfile

@@ -1,55 +1,32 @@
-#
-# Docker file for pfcon image
-#
-# Build production image:
-#
-#   docker build -t <name> .
-#
-# For example if building a local production image:
-#
-#   docker build -t local/pfcon .
-#
-# Build development image:
-#
-#   docker build --build-arg ENVIRONMENT=local -t <name>:<tag> .
-#
-# For example if building a local development image:
-#
-#   docker build --build-arg ENVIRONMENT=local -t local/pfcon:dev .
-#
-# In the case of a proxy (located at say proxy.tch.harvard.edu:3128), do:
-#
-#    export PROXY="http://proxy.tch.harvard.edu:3128"
-#
-# then add to any of the previous build commands:
-#
-#    --build-arg http_proxy=${PROXY}
-#
-# For example if building a local development image:
-#
-# docker build --build-arg http_proxy=${PROXY} --build-arg ENVIRONMENT=local -t local/pfcon:dev .
-#
-
-FROM python:3.10.5-bullseye
+FROM ghcr.io/prefix-dev/pixi:0.27.1 AS build
 
+COPY . /app
 WORKDIR /app
 
-COPY ./requirements ./requirements
-ARG ENVIRONMENT=production
-RUN pip install --no-cache-dir -r /app/requirements/$ENVIRONMENT.txt
+RUN --mount=type=cache,target=/root/.cache/rattler/cache,sharing=locked pixi install
 
-COPY . .
-ARG BUILD_VERSION=unknown
-RUN if [ "$ENVIRONMENT" = "local" ]; then pip install -e .; else pip install .; fi
+RUN pixi run build
 
-EXPOSE 5005
+ARG ENVIRONMENT=prod
+RUN printf '#!/bin/sh\n%s\nexec "$@"' "$(pixi shell-hook -e ${ENVIRONMENT})" > /entrypoint.sh
+RUN chmod +x /entrypoint.sh
+
+# must be the last command of this stage, or else pixi will overwrite the installed package.
+RUN pixi run postinstall-production
+
+FROM docker.io/library/debian:bookworm-slim
+
+COPY --from=build /app/.pixi/envs/${ENVIRONMENT} /app/.pixi/envs/${ENVIRONMENT}
+COPY --from=build /entrypoint.sh /entrypoint.sh
+
+ENTRYPOINT [ "/entrypoint.sh" ]
 CMD ["gunicorn", "--bind", "0.0.0.0:5005", "--workers", "8", "--timeout", "3600", "pfcon.wsgi:application"]
 
+EXPOSE 5005
+
 LABEL org.opencontainers.image.authors="FNNDSC <dev@babyMRI.org>" \
       org.opencontainers.image.title="pfcon" \
       org.opencontainers.image.description="ChRIS compute resource controller" \
       org.opencontainers.image.url="https://chrisproject.org/" \
       org.opencontainers.image.source="https://github.com/FNNDSC/pfcon" \
-      org.opencontainers.image.version=$BUILD_VERSION \
-      org.opencontainers.image.revision=$BUILD_VERSION \
       org.opencontainers.image.licenses="MIT"