Memory Usage #16
Description
Reads which fall within each target region are cached in order to find their pair.
Generally, this is not an issue, but, when the coverage is high this can result in the system running out of memory.
A solution would be to track the memory usage and process the cached reads once a certain capacity is reached. The downside of this approach is that the bam file will need to be iterated over multiple times, which is a very costly procedure.