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Mia.m
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Mia.m
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function Mia(~,~)
global UserValues MIAData PathToApp
h.Mia=findobj('Tag','Mia');
addpath(genpath(['.' filesep 'functions']));
if ~isempty(h.Mia)
figure(h.Mia); % Gives focus to Pam figure
return;
end
if isempty(PathToApp)
GetAppFolder();
end
%%% start splash screen
s = SplashScreen( 'Splashscreen', [PathToApp filesep 'images' filesep 'PAM' filesep 'logo.png'], ...
'ProgressBar', 'on', ...
'ProgressPosition', 5, ...
'ProgressRatio', 0 );
s.addText( 30, 50, 'MIA - Microtime Image Analysis', 'FontSize', 30, 'Color', [1 1 1] );
s.addText( 30, 80, 'v1.0', 'FontSize', 20, 'Color', [1 1 1] );
s.addText( 375, 395, 'Loading...', 'FontSize', 25, 'Color', 'white' );
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Figure generation %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% Loads user profile
LSUserValues(0);
%%% To save typing
Look=UserValues.Look;
%%% Generates the Mia figure
h.Mia = figure(...
'Units','normalized',...
'Tag','Mia',...
'Name','MIA: Microtime image analysis',...
'NumberTitle','off',...
'Menu','none',...
'defaultUicontrolFontName',Look.Font,...
'defaultAxesFontName',Look.Font,...
'defaultTextFontName',Look.Font,...
'Toolbar','figure',...
'UserData',[],...
'OuterPosition',[0.01 0.1 0.98 0.9],...
'CloseRequestFcn',@CloseWindow,...
'Visible','off');
%h.Mia.Visible='off';
h.Text=[];
%%% Sets background of axes and other things
whitebg(Look.Axes);
%%% Changes Pam background; must be called after whitebg
h.Mia.Color=Look.Back;
%%% Remove unneeded items from toolbar
toolbar = findall(h.Mia,'Type','uitoolbar');
toolbar_items = findall(toolbar);
if verLessThan('matlab','9.5') %%% toolbar behavior changed in MATLAB 2018b
delete(toolbar_items([2:7 13:17]));
else %%% 2018b and upward
%%% just remove the tool bar since the options are now in the axis
%%% (e.g. axis zoom etc)
delete(toolbar_items);
end
%%% Menu to load mia data
h.Mia_Load = uimenu(...
'Parent',h.Mia,...
'Label','Load...',...
'Tag','Load_Mia');
%%% Load TIFF
h.Mia_Load_TIFF_Single = uimenu(...
'Parent',h.Mia_Load,...
'Label','...single color TIFFs',...
'Callback',{@Mia_Load,1},...
'Tag','Load_Mia_TIFF_SIngle');
%%% Load TIFF
h.Mia_Load_TIFF_RGB = uimenu(...
'Parent',h.Mia_Load,...
'Label','...RGB TIFFs');
%%% Load TIFF
h.Mia_Load_TIFF_RGB_GR = uimenu(...
'Parent',h.Mia_Load_TIFF_RGB,...
'Label','...Green-Red',...
'Callback',{@Mia_Load,4},...
'Tag','Load_Mia_TIFF_SIngle');
%%% Load TIFF
h.Mia_Load_TIFF_RGB_GR = uimenu(...
'Parent',h.Mia_Load_TIFF_RGB,...
'Label','...Blue-Green',...
'Callback',{@Mia_Load,5},...
'Tag','Load_Mia_TIFF_SIngle');
%%% Load TIFF
h.Mia_Load_TIFF_RGB_GR = uimenu(...
'Parent',h.Mia_Load_TIFF_RGB,...
'Label','...Blue-Red',...
'Callback',{@Mia_Load,6},...
'Tag','Load_Mia_TIFF_SIngle');
%%% Load TIFF
h.Mia_Load_TIFF_RLICS = uimenu(...
'Parent',h.Mia_Load,...
'Label','...weighted TIFFs',...
'Callback',{@Mia_Load,1.5},...
'Tag','Load_Mia_TIFF_RLICS');
%%% Load Data from Pam
h.Mia_Load_Pam = uimenu(...
'Parent',h.Mia_Load,...
'Label','...data from PAM',...
'Callback',{@Mia_Load,2},...
'Tag','Load_Mia_Pam');
%%% Load custom data format
h.Mia_Load_Custom = uimenu(...
'Parent',h.Mia_Load,...
'Label','...custom data format',...
'Callback',{@Mia_Load,3},...
'Tag','Load_Mia_Custom');
%%% Menu to open MIAFit and Spectral
h.Mia_Open = uimenu(...
'Parent',h.Mia,...
'Label','Open...',...
'Tag','Mia_Open');
%%% Open MIAFit
h.Mia_Open_MIAFit = uimenu(...
'Parent',h.Mia_Open,...
'Label','MIAFit',...
'Callback',@MIAFit,...
'Tag','Mia_Open_MIAFit');
%%% Open RICSPE
h.Mia_Open_RICSPE = uimenu(...
'Parent',h.Mia_Open,...
'Label','RICSPE',...
'Callback',@RICSPE_GUI,...
'Tag','Mia_Open_RICSPE');
%%% Open Spectral
h.Mia_Open_Spectral = uimenu(...
'Parent',h.Mia_Open,...
'Label','Spectral',...
'Callback',@Spectral,...
'Tag','Mia_Open_Spectral');
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Progressbar and file names %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% Panel for progressbar
h.Mia_Progress_Panel = uibuttongroup(...
'Parent',h.Mia,...
'Units','normalized',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'HighlightColor', Look.Control,...
'ShadowColor', Look.Shadow,...
'Position',[0.001 0.98 0.998 0.02]);
%%% Axes for progressbar
h.Mia_Progress_Axes = axes(...
'Parent',h.Mia_Progress_Panel,...
'Units','normalized',...
'Color',Look.Control,...
'Position',[0 0 1 1]);
h.Mia_Progress_Axes.XTick=[]; h.Mia_Progress_Axes.YTick=[];
%%% Progress and filename text
h.Mia_Progress_Text=text(...
'Parent',h.Mia_Progress_Axes,...
'Units','normalized',...
'FontSize',12,...
'FontWeight','bold',...
'String','Nothing loaded',...
'Interpreter','none',...
'HorizontalAlignment','center',...
'BackgroundColor','none',...
'Color',Look.Fore,...
'Position',[0.5 0.5]);
%% Main tab container %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
h.Mia_Main_Tabs = uitabgroup(...
'Parent',h.Mia,...
'Tag','Mia_Main_Tabs',...
'Units','normalized',...
'Position',[0 0 1 0.98]);
%% Image Tab
h.Mia_Image.Tab = uitab(...
'Parent',h.Mia_Main_Tabs,...
'Title','Image',...
'Tag','Mia_Main_Tabs',...
'Units','normalized');
h.Mia_Image.Panel = uibuttongroup(...
'Parent',h.Mia_Image.Tab,...
'Tag','Mia_Main_Panel',...
'Units','normalized',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'HighlightColor', Look.Control,...
'ShadowColor', Look.Shadow,...
'Position',[0 0 0.8 1]);
h.Mia_Image.Menu = uicontextmenu;
h.Mia_Image.Select_Manual_ROI = uimenu(...
'Parent',h.Mia_Image.Menu,...
'Label','Select manual ROI',...
'Callback',{@Mia_Freehand,1});
h.Mia_Image.Unselect_Manual_ROI = uimenu(...
'Parent',h.Mia_Image.Menu,...
'Label','Unselect manual ROI',...
'Callback',{@Mia_Freehand,2});
h.Mia_Image.Clear_Manual_ROI = uimenu(...
'Parent',h.Mia_Image.Menu,...
'Label','Clear manual ROI',...
'Callback',{@Mia_Freehand,3});
for i=1:2
%%% Axes to display images
h.Mia_Image.Axes(i,1)= axes(...
'Parent',h.Mia_Image.Panel,...
'Tag', ['ImRaw', num2str(i)],...
'Units','normalized',...
'NextPlot','Add',...
'Position',[0.28 0.99-0.49*i 0.35 0.48]);
colormap(h.Mia_Image.Axes(i,1),gray(64));
h.Mia_Image.Axes(i,2)= axes(...
'Parent',h.Mia_Image.Panel,...
'Tag', ['ImCorr', num2str(i)],...
'Units','normalized',...
'NextPlot','Add',...
'Position',[0.64 0.99-0.49*i 0.35 0.48]);
colormap(h.Mia_Image.Axes(i,2),gray(64));
%%% Initializes empty plots
h.Plots.Image(i,1)=imagesc(zeros(1),...
'Parent',h.Mia_Image.Axes(i,1),...
'ButtonDownFcn',{@Mia_ROI,2});
h.Mia_Image.Axes(i,1).DataAspectRatio=[1 1 1];
h.Mia_Image.Axes(i,1).XTick=[];
h.Mia_Image.Axes(i,1).YTick=[];
h.Plots.Image(i,2)=imagesc(zeros(1),...
'Parent',h.Mia_Image.Axes(i,2),...
'ButtonDownFcn',@Mia_Export);
h.Mia_Image.Axes(i,2).DataAspectRatio=[1 1 1];
h.Mia_Image.Axes(i,2).XTick=[];
h.Mia_Image.Axes(i,2).YTick=[];
%%% Initializes a rectangle ROI
h.Plots.ROI(i)=rectangle(...
'Parent',h.Mia_Image.Axes(i,1),...
'Position',[0.5 0.5 1 1],...
'EdgeColor',[1 1 1],...
'HitTest','off');
end
%%% Text
h.Mia_Image.DoPCH = handle(uicontrol(...
'Parent',h.Mia_Image.Panel,...
'Style','checkbox',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Value', UserValues.MIA.DoPCH,...
'Position',[0.05 0.97 0.21 0.02],...
'String','Calculate PCH' ));
h.Mia_Image.Intensity_Axes = axes(...
'Parent',h.Mia_Image.Panel,...
'Units','normalized',...
'XColor',Look.Fore,...
'YColor',Look.Fore,...
'Position',[0.05 0.55 0.21 0.38]);
h.Plots.Int(1,1) = line(...
'Parent',h.Mia_Image.Intensity_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'LineStyle','--',...
'Color',[0 0.6 0]);
h.Plots.Int(1,2) = line(...
'Parent',h.Mia_Image.Intensity_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'Color',[0 0.6 0]);
h.Plots.Int(2,1) = line(...
'Parent',h.Mia_Image.Intensity_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'LineStyle','--',...
'Visible','off',...
'Color',[1 0 0]);
h.Plots.Int(2,2) = line(...
'Parent',h.Mia_Image.Intensity_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'Visible','off',...
'Color',[1 0 0]);
h.Mia_Image.Intensity_Axes.XLabel.String = 'Frame';
h.Mia_Image.Intensity_Axes.YLabel.String = 'Average Countrate [kHz]';
h.Mia_Image.Intensity_Axes.XLabel.Color = Look.Fore;
h.Mia_Image.Intensity_Axes.YLabel.Color = Look.Fore;
h.Mia_Image.Intensity_Axes.YLabel.UserData = 1;
h.Mia_Image.Intensity_Axes.YLabel.ButtonDownFcn = {@MIA_Various,[1 2]};
h.Mia_Image.Intensity_Axes.XLabel.UserData = 1;
h.Mia_Image.Intensity_Axes.XLabel.ButtonDownFcn = {@MIA_Various,[1 2]};
h.Mia_Image.PCH_Axes = axes(...
'Parent',h.Mia_Image.Panel,...
'Units','normalized',...
'XColor',Look.Fore,...
'YColor',Look.Fore,...
'Position',[0.05 0.07 0.21 0.38]);
h.Plots.PCH(1,1) = line(...
'Parent',h.Mia_Image.PCH_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'LineStyle','--',...
'Color',[0 0.6 0]);
h.Plots.PCH(1,2) = line(...
'Parent',h.Mia_Image.PCH_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'Color',[0 0.6 0]);
h.Plots.PCH(2,1) = line(...
'Parent',h.Mia_Image.PCH_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'LineStyle','--',...
'Visible','off',...
'Color',[1 0 0]);
h.Plots.PCH(2,2) = line(...
'Parent',h.Mia_Image.PCH_Axes,...
'XData',[0 1],...
'YData', [0 0],...
'Visible','off',...
'Color',[1 0 0]);
h.Mia_Image.PCH_Axes.XLabel.String = 'Counts';
h.Mia_Image.PCH_Axes.YLabel.String = 'Frequency';
h.Mia_Image.PCH_Axes.XLabel.Color = Look.Fore;
h.Mia_Image.PCH_Axes.YLabel.Color = Look.Fore;
h.Mia_Image.PCH_Axes.YLabel.UserData = 1;
h.Mia_Image.PCH_Axes.YLabel.ButtonDownFcn = {@MIA_Various,[1 2]};
h.Mia_Image.PCH_Axes.XLabel.UserData = 1;
h.Mia_Image.PCH_Axes.XLabel.ButtonDownFcn = {@MIA_Various,[1 2]};
%% Settings Tab container
h.Mia_Image.Settings.Panel = uibuttongroup(...
'Parent',h.Mia_Image.Tab,...
'Tag','Mia_Settings_Panel',...
'Units','normalized',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'HighlightColor', Look.Control,...
'ShadowColor', Look.Shadow,...
'Position',[0.8 0.5 0.2 0.5]);
h.Mia_Image.Settings.Tabs = uitabgroup(...
'Parent',h.Mia_Image.Settings.Panel,...
'Tag','Mia_Settings_Tabs',...
'Units','normalized',...
'Position',[0 0 1 1]);
%% Mia Channel setting container
%%% Tab and panel for Mia image settings UIs
h.Mia_Image.Settings.Channel_Tab= uitab(...
'Parent',h.Mia_Image.Settings.Tabs,...
'Title','Channels');
h.Mia_Image.Settings.Channel_Panel = uibuttongroup(...
'Parent',h.Mia_Image.Settings.Channel_Tab,...
'Units','normalized',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'HighlightColor', Look.Control,...
'ShadowColor', Look.Shadow,...
'Position',[0 0 1 1]);
%%% Text
h.Text{end+1} = handle(uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.92 0.48 0.06],...
'String','Channel 1' ));
%%% Text
h.Text{end+1} = handle(uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.51 0.92 0.48 0.06],...
'String','Channel 2' ));
%%% Text
h.Text{end+1} = handle(uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.86 0.98 0.05],...
'String','Image Colormap:' ));
%%% Colormap selection for images
h.Mia_Image.Settings.Channel_Colormap(1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'Value', UserValues.MIA.ColorMap_Main(1),...
'UserData',UserValues.MIA.CustomColor(1,:),...
'UserData',[0 1 0],...
'Callback',{@Update_Plots,1,1},...
'ButtonDownFcn',{@Mia_Color,1},...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.80 0.48 0.06],...
'String',{'Gray','Jet','Hot','HSV','Custom', 'HiLo'});
%%% Colormap selection for images
h.Mia_Image.Settings.Channel_Colormap(2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'Value', UserValues.MIA.ColorMap_Main(2),...
'UserData',UserValues.MIA.CustomColor(2,:),...
'Callback',{@Update_Plots,1,2},...
'ButtonDownFcn',{@Mia_Color,2},...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.51 0.80 0.48 0.06],...
'String',{'Gray','Jet','Hot','HSV','Custom', 'HiLo'});
if ismac
h.Mia_Image.Settings.Channel_Colormap(1).ForegroundColor = [0 0 0];
h.Mia_Image.Settings.Channel_Colormap(1).BackgroundColor = [1 1 1];
h.Mia_Image.Settings.Channel_Colormap(2).ForegroundColor = [0 0 0];
h.Mia_Image.Settings.Channel_Colormap(2).BackgroundColor = [1 1 1];
end
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.71 0.98 0.05],...
'String','PIE Channel to load:');
%%% Colormap selection for images
h.Mia_Image.Settings.Channel_PIE(1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Value',1,...
'Position',[0.01 0.65, 0.48 0.06],...
'String',UserValues.PIE.Name);
%%% Colormap selection for images
h.Mia_Image.Settings.Channel_PIE(2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Value',numel(UserValues.PIE.Name)+1,...
'Position',[0.51 0.65, 0.48 0.06],...
'String',[UserValues.PIE.Name,{'Nothing'}]);
if ismac
h.Mia_Image.Settings.Channel_PIE(1).ForegroundColor = [0 0 0];
h.Mia_Image.Settings.Channel_PIE(1).BackgroundColor = [1 1 1];
h.Mia_Image.Settings.Channel_PIE(2).ForegroundColor = [0 0 0];
h.Mia_Image.Settings.Channel_PIE(2).BackgroundColor = [1 1 1];
end
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.56, 0.98 0.05],...
'String','Show in second plot:');
%%% Popupmenu to select what to plot in second plot
h.Mia_Image.Settings.Channel_Second(1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.50, 0.48 0.06],...
'Callback',{@Update_Plots,1,1},...
'Value',2,...
'String',{'Original','Dynamic','Static'});
%%% Popupmenu to select what to plot in second plot
h.Mia_Image.Settings.Channel_Second(2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.51 0.50, 0.48 0.06],...
'Callback',{@Update_Plots,1,2},...
'Value',2,...
'String',{'Original','Dynamic','Static'});
if ismac
h.Mia_Image.Settings.Channel_Second(1).ForegroundColor = [0 0 0];
h.Mia_Image.Settings.Channel_Second(1).BackgroundColor = [1 1 1];
h.Mia_Image.Settings.Channel_Second(2).ForegroundColor = [0 0 0];
h.Mia_Image.Settings.Channel_Second(2).BackgroundColor = [1 1 1];
end
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.41, 0.98 0.05],...
'String','Scale image:');
%%% Popupmenu to select how to scale images
h.Mia_Image.Settings.AutoScale = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.35, 0.98 0.06],...
'Callback',{@Update_Plots,1,1:2},...
'Value',1,...
'String',{'Autoscale Frame','Autoscale Total','Manual Scale'});
if ismac
h.Mia_Image.Settings.AutoScale.ForegroundColor = [0 0 0];
h.Mia_Image.Settings.AutoScale.BackgroundColor = [1 1 1];
end
%%% Text
h.Mia_Image.Settings.Scale_Text = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Visible', 'off',...
'Position',[0.01 0.28, 0.98 0.05],...
'String','Scale min/max [Counts]:');
%%% Editboxes for scaleing
h.Mia_Image.Settings.Scale(1,1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Visible', 'off',...
'Callback',{@Update_Plots,1,1},...
'Position',[0.01 0.23, 0.2 0.05],...
'String','0');
h.Mia_Image.Settings.Scale(1,2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Visible', 'off',...
'Callback',{@Update_Plots,1,1},...
'Position',[0.23 0.23, 0.2 0.05],...
'String','100');
h.Mia_Image.Settings.Scale(2,1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Visible', 'off',...
'Callback',{@Update_Plots,1,2},...
'Position',[0.51 0.23, 0.2 0.05],...
'String','0');
h.Mia_Image.Settings.Scale(2,2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Visible', 'off',...
'Callback',{@Update_Plots,1,2},...
'Position',[0.73 0.23, 0.2 0.05],...
'String','100');
%%% Checkbox to link channels
h.Mia_Image.Settings.Channel_Link = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','checkbox',...
'Units','normalized',...
'FontSize',12,...
'Callback',{@Mia_Frame,2,1},...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.16, 0.98 0.05],...
'Value',1,...
'String','Link channels');
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','center',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.01 0.11, 0.98 0.05],...
'String','Show Frame:');
%%% Editbox for frame
h.Mia_Image.Settings.Channel_Frame(1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Callback',{@Mia_Frame,1,1},...
'Position',[0.01 0.06, 0.2 0.05],...
'String','1');
%%% Checkbox for use frame
h.Mia_Image.Settings.Channel_FrameUse(1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','checkbox',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Callback',{@Mia_CheckFrame,1},...
'Value',1,...
'Position',[0.23 0.06, 0.25 0.05],...
'String','Use');
%%% Slider for frame
h.Mia_Image.Settings.Channel_Frame_Slider(1) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','slider',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'UserData',[2,1],...
'Position',[0.01 0.01, 0.48 0.04]);
h.Mia_Image.Settings.Channel_Frame_Listener(1)=addlistener(h.Mia_Image.Settings.Channel_Frame_Slider(1),'Value','PostSet',@Mia_Frame);
%%% Editbox for frame
h.Mia_Image.Settings.Channel_Frame(2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Callback',{@Mia_Frame,1,2},...
'Position',[0.51 0.06, 0.2 0.05],...
'String','1');
%%% Checkbox for use frame
h.Mia_Image.Settings.Channel_FrameUse(2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','checkbox',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Callback',{@Mia_CheckFrame,2},...
'Value',1,...
'Position',[0.73 0.06, 0.25 0.05],...
'String','Use');
%%% Slider for frame
h.Mia_Image.Settings.Channel_Frame_Slider(2) = uicontrol(...
'Parent',h.Mia_Image.Settings.Channel_Panel,...
'Style','slider',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'UserData',[2,2],...
'Position',[0.51 0.01, 0.48 0.04]);
h.Mia_Image.Settings.Channel_Frame_Listener(2)=addlistener(h.Mia_Image.Settings.Channel_Frame_Slider(2),'Value','PostSet',@Mia_Frame);
%% Mia image settings tab
%%% Tab and panel for Mia image settings UIs
h.Mia_Image.Settings.Image_Tab= uitab(...
'Parent',h.Mia_Image.Settings.Tabs,...
'Tag','MI_Image_Tab',...
'Title','Image');
h.Mia_Image.Settings.Image_Panel = uibuttongroup(...
'Parent',h.Mia_Image.Settings.Image_Tab,...
'Tag','Mia_Image_Settings_Panel',...
'Units','normalized',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'HighlightColor', Look.Control,...
'ShadowColor', Look.Shadow,...
'Position',[0 0 1 1]);
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.92, 0.4 0.06],...
'String','Frame time [s]:');
%%% Editbox to set frame time
h.Mia_Image.Settings.Image_Frame = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Callback',{@Update_Plots, [4 5 6],1:3},...
'Position',[0.45 0.92, 0.2 0.06],...
'String','1');
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.84, 0.4 0.06],...
'String','Line time [ms]:');
%%% Editbox to set line time
h.Mia_Image.Settings.Image_Line = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.45 0.84, 0.2 0.06],...
'String','3.333');
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.76, 0.4 0.06],...
'String','Pixel time [us]:');
%%% Editbox to set pixel time
h.Mia_Image.Settings.Image_Pixel = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Callback',{@Update_Plots,4,[]},...
'Position',[0.45 0.76, 0.2 0.06],...
'String','11.11');
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.68, 0.4 0.06],...
'String','Pixel size [nm]:');
%%% Editbox to set pixel size
h.Mia_Image.Settings.Image_Size = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.45 0.68, 0.2 0.06],...
'Callback',{@Update_Plots, 6,1:3},...
'String','40');
%%% Text
h.Mia_Image.Settings.Image_Mean_CR = uicontrol(...
'Parent',h.Mia_Image.Settings.Image_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.52, 0.96 0.1],...
'String','Mean Countrate [kHz]:');
%% Mia ROI setting tab
%%% Tab and panel for Mia ROI settings UIs
h.Mia_Image.Settings.ROI_Tab= uitab(...
'Parent',h.Mia_Image.Settings.Tabs,...
'Tag','MI_ROI_Settings_Tab',...
'Title','ROI');
h.Mia_Image.Settings.ROI_Panel = uibuttongroup(...
'Parent',h.Mia_Image.Settings.ROI_Tab,...
'Tag','Mia_ROI_Settings_Panel',...
'Units','normalized',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'HighlightColor', Look.Control,...
'ShadowColor', Look.Shadow,...
'Position',[0 0 1 1]);
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.ROI_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.92, 0.35 0.06],...
'String','ROI size:');
%%% Popupmenu to select ROI Size
h.Mia_Image.Settings.ROI_SizeX = uicontrol(...
'Parent',h.Mia_Image.Settings.ROI_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.35 0.92, 0.25 0.06],...
'Callback',{@Mia_ROI,1},...
'String','200');
%%% Popupmenu to select ROI Size
h.Mia_Image.Settings.ROI_SizeY = uicontrol(...
'Parent',h.Mia_Image.Settings.ROI_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.62 0.92, 0.25 0.06],...
'Callback',{@Mia_ROI,1},...
'String','200');
%%% Text
h.Text{end+1} = uicontrol(...
'Parent',h.Mia_Image.Settings.ROI_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.84, 0.35 0.06],...
'String','ROI pos:');
%%% Popupmenu to select ROI Position
h.Mia_Image.Settings.ROI_PosX = uicontrol(...
'Parent',h.Mia_Image.Settings.ROI_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.35 0.84, 0.25 0.06],...
'Callback',{@Mia_ROI,1},...
'String','0');
%%% Popupmenu to select ROI Position
h.Mia_Image.Settings.ROI_PosY = uicontrol(...
'Parent',h.Mia_Image.Settings.ROI_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.62 0.84, 0.25 0.06],...
'Callback',{@Mia_ROI,1},...
'String','0');
%%% Text
h.Text{end+1} = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.76, 0.5 0.06],...
'String','Frame range:',...
'Tooltipstring','Sets the frame range to use (applies to all analyses)');
%%% Editbox to select, which frames to correlate
h.Mia_Image.Settings.ROI_Frames = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Panel,...
'Style','edit',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.62 0.76, 0.25 0.06],...
'String','1',...
'Tooltipstring','Sets the frame range to use (applies to all analyses)');
%%%Button to Import ROI from file
h.Mia_Image.Settings.Load_ROI = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Tab,...
'Style','push',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.02, 0.8 0.06],...
'Callback',{@Import_ROI},...
'String','Import ROI from .mat File');
%%% Text
h.Text{end+1} = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.02 0.68, 0.35 0.06],...
'String','Special selection:');
%%% Select unselection criteria
h.Mia_Image.Settings.ROI_FramesUse = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Panel,...
'Style','popupmenu',...
'Units','normalized',...
'FontSize',12,...
'BackgroundColor', Look.Control,...
'ForegroundColor', Look.Fore,...
'Position',[0.34 0.68, 0.27 0.06],...
'Callback',{@MIA_Various,3},...
'String',{'None','Checked frames','Arbitrary ROI'});
if ismac
h.Mia_Image.Settings.ROI_FramesUse.ForegroundColor = [0 0 0];
h.Mia_Image.Settings.ROI_FramesUse.BackgroundColor = [1 1 1];
end
h.Mia_Image.Settings.ROI_AR_Text = {};
% h.Mia_Image.Settings.ROI_AR_Text{end+1} = uicontrol(...
% 'Parent', h.Mia_Image.Settings.ROI_Panel,...
% 'Style','text',...
% 'Units','normalized',...
% 'FontSize',14,...
% 'HorizontalAlignment','left',...
% 'BackgroundColor', Look.Back,...
% 'ForegroundColor', Look.Fore,...
% 'Position',[0.02 0.54, 0.56 0.11],...
% 'Visible', 'off',...
% 'String','Arbitrary region threshold');
%%% Text
h.Mia_Image.Settings.ROI_AR_Text{end+1} = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.58 0.58, 0.2 0.06],...
'Visible', 'off',...
'String','MIN');
%%% Text
h.Mia_Image.Settings.ROI_AR_Text{end+1} = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',14,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'Position',[0.81 0.58, 0.2 0.06],...
'Visible', 'off',...
'String','MAX');
%%% Text
h.Mia_Image.Settings.ROI_AR_Text{end+1} = uicontrol(...
'Parent', h.Mia_Image.Settings.ROI_Panel,...
'Style','text',...
'Units','normalized',...
'FontSize',12,...
'HorizontalAlignment','left',...
'BackgroundColor', Look.Back,...
'ForegroundColor', Look.Fore,...
'TooltipString',['Specifies min\max pixel countrate' 10 'averaged over all frames'],...
'Position',[0.02 0.52, 0.50 0.06],...
'Visible', 'off',...