From 32f63e9bd41a395bc385cafd62d98834751e7e4c Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 4 Dec 2023 09:47:07 +0000 Subject: [PATCH 1/7] updates to some fru neuron defs --- src/ontology/fbbt-edit.obo | 49 ++++++++++++++++++++++---------------- 1 file changed, 28 insertions(+), 21 deletions(-) diff --git a/src/ontology/fbbt-edit.obo b/src/ontology/fbbt-edit.obo index 401a67a72..e014d8285 100644 --- a/src/ontology/fbbt-edit.obo +++ b/src/ontology/fbbt-edit.obo @@ -72405,7 +72405,7 @@ property_value: http://purl.org/dc/terms/date "2021-01-12T13:20:34Z" xsd:dateTim [Term] id: FBbt:00047238 name: adult dorsal posterior Ilp7 (female) neuron -def: "Female version of the adult dorsal posterior Ilp7 neuron. This is a glutamatergic motor neuron that innervates the oviduct. There are 4 of these neurons, in a dorsal cluster. These cells are generated by post-embryonic neurogenesis in the late third instar larva. Unlike the male version, this cell does not produce serotonin." [FlyBase:FBrf0222499] +def: "Female version of the adult dorsal posterior Ilp7 neuron. It is a glutamatergic motor neuron that innervates the oviduct (Castellanos et al., 2013). There are 4 of these neurons, in a dorsal cluster (Castellanos et al., 2013). Unlike the male version, this cell does not produce serotonin (Castellanos et al., 2013)." [FlyBase:FBrf0222499] comment: These neurons express fruitless (FBgn0004652) but not doublesex (FBgn0000504). The expression of Bruchpilot was used to reveal presynaptic terminals (Castellanos et al., 2013). synonym: "female Ilp7 neuron" BROAD [FlyBase:FBrf0222499] synonym: "female-specific dorsal Ilp7 neuron" EXACT [FlyBase:FBrf0222499] @@ -72424,7 +72424,7 @@ property_value: http://purl.org/dc/terms/date "2018-06-12T12:47:20Z" xsd:dateTim [Term] id: FBbt:00047239 name: adult dorsal posterior Ilp7 neuron -def: "Sexually dimorphic Ilp7 neuron on the dorsal side of the posterior abdominal ganglion, which also expresses fruitless. These cells are generated by post-embryonic neurogenesis in the late third instar larva. They innervate the reproductive tracts." [FlyBase:FBrf0222499] +def: "Sexually dimorphic Ilp7 and fruitless-expressing secondary neuron with its soma on the dorsal side of the posterior abdominal ganglion (Castellanos et al., 2013). It innervates the reproductive tract (Castellanos et al., 2013)." [FlyBase:FBrf0222499] comment: The expression of Bruchpilot was used to reveal presynaptic terminals (Castellanos et al., 2013). xref: VFB:FBbt_00047239 is_a: FBbt:00047096 ! secondary neuron @@ -166612,11 +166612,15 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110419 name: adult fruitless aDT-c neuron -def: "Fruitless neuron belonging to the adult fruitless aDT-c lineage clone." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the anterior brain, near the antennal lobe (Kimura et al., 2008; Cachero et al., 2010). It arborizes in the ipsilateral lateral accessory lobe and superior protocerebrum and a branch crosses the midline to form an arbor in the contralateral protocerebrum (Cachero et al., 2010). There is one of these cells per hemisphere (Kimura et al., 2008; Cachero et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211926] +comment: Arbor locations determined by visualization of Cachero et al. (2010) clone in Virtual Fly Brain. synonym: "aDT-c neuron" EXACT [FlyBase:FBrf0211926] synonym: "AL2 neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211926] synonym: "fru-AL neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211926] xref: VFB:FBbt_00110419 +relationship: RO:0000053 PATO:0000618 ! has characteristic bilateral +relationship: RO:0013001 FBbt:00003681 ! has synaptic IO in region adult lateral accessory lobe +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -166673,10 +166677,10 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110423 name: adult fruitless aDT-e (female) neuron -def: "Fruitless neuron belonging to the adult fruitless aDT-e (female) lineage clone that develops from neuroblast ALl1 and is part of a female organism." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult female fruitless neuron that develops from neuroblast ALl1 (Ito et al., 2013; Yu et al., 2013). There are approximately 29 of these per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "female aDT-e neuron" EXACT [FlyBase:FBrf0211926] synonym: "female aDT3 neuron" BROAD [FlyBase:FBrf0211884] -synonym: "female AL3 neuron" BROAD [FlyBase:FBrf0205974, FlyBase:FBrf0211926] +synonym: "female AL3 neuron" NARROW [FlyBase:FBrf0205974, FlyBase:FBrf0211926] synonym: "female fru-AL neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211926] xref: VFB:FBbt_00110423 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -166698,7 +166702,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110425 name: adult fruitless aDT-f neuron -def: "Fruitless neuron belonging to the adult fruitless aDT-f lineage clone that develops from neuroblast ALv1." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron that develops from neuroblast ALv1 (Ito et al., 2013; Yu et al., 2013). There are approximately 21 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "aDT-f neuron" EXACT [FlyBase:FBrf0211926] synonym: "adult fruitless aDT3 neuron" BROAD [FlyBase:FBrf0211884, FlyBase:FBrf0211926] xref: VFB:FBbt_00110425 @@ -166727,7 +166731,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110427 name: adult fruitless aDT-g neuron -def: "Adult fruitless neuron with its soma ventral to the antennal lobe (Yu et al., 2010). It innervates the ipsilateral antennal mechanosensory and motor center (AMMC) zone A and projects to the posterior lateral protocerebrum (Yu et al., 2010; Vaughan et al., 2014). It develops from the BAlp1 (PSa1) neuroblast (Ito et al., 2013)." [FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0225096] +def: "Adult fruitless neuron with its soma ventral to the antennal lobe (Yu et al., 2010). It innervates the ipsilateral antennal mechanosensory and motor center (AMMC) zone A and projects to the posterior lateral protocerebrum (Yu et al., 2010; Vaughan et al., 2014). It develops from the BAlp1 (PSa1) neuroblast (Ito et al., 2013). There are approximately 22 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0225096] synonym: "adult fruitless aDT5 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "AMMC projection neuron 5" EXACT [FlyBase:FBrf0225096] synonym: "aPN5 neuron" EXACT [FlyBase:FBrf0225096] @@ -166759,7 +166763,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110429 name: adult fruitless aDT-h neuron -def: "Adult fruitless neuron that develops from neuroblast BAmas2 (FLAa3) (Yu et al., 2013). It has its soma in the anterior dorsal part of the subesophageal zone (Sterne et al., 2021). It is a projection neuron that has dendritic arborizations in the prow and flange and axonal terminals in the superior medial protocerebrum, extending laterally in both hemispheres (Yu et al., 2010; Sterne et al., 2021)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0251280] +def: "Adult fruitless neuron that develops from neuroblast BAmas2 (FLAa3) (Yu et al., 2013). It has its soma in the anterior dorsal part of the subesophageal zone (Sterne et al., 2021). It is a projection neuron that has dendritic arborizations in the prow and flange and axonal terminals in the superior medial protocerebrum, extending laterally in both hemispheres (Yu et al., 2010; Sterne et al., 2021). There are approximately 50 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0251280] synonym: "adult fruitless aDT6 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "fru-mcAL neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211926] synonym: "mcALa neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926] @@ -166791,7 +166795,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110431 name: adult fruitless aIP-a neuron -def: "Fruitless neuron belonging to the adult fruitless aIP-a lineage clone that develops from neuroblast VLPa2." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron that develops from neuroblast VLPa2 (Ito et al., 2013; Yu et al., 2013). There are approximately 23 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "aIP-a neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110431 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -166814,7 +166818,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110433 name: adult fruitless aIP-b (female) neuron -def: "Fruitless neuron belonging to the adult fruitless aIP-b (female) lineage clone that develops from neuroblast VLPa1 and is part of a female organism." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult female fruitless neuron that develops from neuroblast VLPa1 (Ito et al., 2013; Yu et al., 2013). There are approximately 20 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "female aIP-b neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110433 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -166878,6 +166882,7 @@ synonym: "female AL6b neuron" BROAD [FlyBase:FBrf0211884] synonym: "female fru-AL neuron" BROAD [FlyBase:FBrf0211884] xref: VFB:FBbt_00110437 relationship: RO:0000053 PATO:0000634 ! has characteristic unilateral +relationship: RO:0000053 PATO:0002451 ! has characteristic sexually dimorphic property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -166904,7 +166909,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110439 name: adult fruitless aIP-e (female) neuron -def: "Adult female fruitless neuron with its soma lateral to the lateral horn, ventral to aSP-k (aSP8), and arborization only in the ipsilateral hemisphere, including the lateral horn (Yu et al., 2010). It develops from neuroblast BLAv2 (VLPl2) (Ito et al., 2013)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult female fruitless neuron with its soma lateral to the lateral horn, ventral to aSP-k (aSP8), and arborization only in the ipsilateral hemisphere, including the lateral horn (Yu et al., 2010). It develops from neuroblast BLAv2 (VLPl2) (Ito et al., 2013). There are approximately 27 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "adult female fruitless aSP9 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "female aIP-e neuron" EXACT [FlyBase:FBrf0211926] synonym: "female AL6a neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211884] @@ -166932,7 +166937,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110441 name: adult fruitless aIP-f neuron -def: "Fruitless neuron belonging to the adult fruitless aIP-f lineage clone that develops from neuroblast VPNl&d1." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron that develops from neuroblast VPNl&d1 (Ito et al., 2010; Yu et al., 2010). There are approximately 23 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "aIP-f neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110441 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -166981,7 +166986,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110445 name: adult fruitless aIP-h neuron -def: "Fruitless neuron belonging to the adult fruitless aIP-h lineage clone that develops from neuroblast BAlp3." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron of the aIP-h cluster in the anterior inferior protocerebrum, which comprises approximately 11 neurons (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "aIP-h neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110445 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -167003,7 +167008,8 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110447 name: adult fruitless aSG-a neuron -def: "Fruitless neuron belonging to the adult fruitless aSG-a lineage clone." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron of the aSG-a cluster, which consists of approximately 10 neurons (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Stated to be a descending clone in Cachero et al. (2010) Table 1, but VNC projections not shown in supplement. synonym: "aSG-a neuron" EXACT [FlyBase:FBrf0211926] synonym: "fru-SG neuron" BROAD [FlyBase:FBrf0211926] xref: VFB:FBbt_00110447 @@ -168706,8 +168712,8 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T16:20:07Z" xsd:dateTim [Term] id: FBbt:00110573 name: adult fruitless aIP-i neuron -def: "Fruitless neuron belonging to the adult fruitless aIP-i lineage clone." [FlyBase:FBrf0211926] -synonym: "aIP-i neuron" EXACT [FlyBase:FBrf0211926] +def: "Adult fruitless neuron of the aIP-i cluster in the anterior inferior protocerebrum (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Not mentioned in Cachero et al. (2010) paper, but clone image data provided to and can be found in Virtual Fly Brain. xref: VFB:FBbt_00110573 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-07-25T16:20:07Z" xsd:dateTime @@ -168845,10 +168851,10 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T18:37:08Z" xsd:dateTim [Term] id: FBbt:00110583 name: adult fruitless aDT-e (male) neuron -def: "Fruitless neuron belonging to the adult fruitless aDT-e (male) lineage clone that develops from neuroblast ALl1 and is part of a male organism." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult male fruitless neuron that develops from neuroblast ALl1 (Ito et al., 2013; Yu et al., 2013). There are approximately 29 of these per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "male aDT-e neuron" EXACT [FlyBase:FBrf0211926] synonym: "male aDT3 neuron" BROAD [FlyBase:FBrf0211884] -synonym: "male AL3 neuron" BROAD [FlyBase:FBrf0205974, FlyBase:FBrf0211926] +synonym: "male AL3 neuron" NARROW [FlyBase:FBrf0205974, FlyBase:FBrf0211926] synonym: "male fru-AL neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211926] xref: VFB:FBbt_00110583 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -168871,7 +168877,7 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T18:37:08Z" xsd:dateTim [Term] id: FBbt:00110585 name: adult fruitless aIP-b (male) neuron -def: "Fruitless neuron belonging to the adult fruitless aIP-b (male) lineage clone that develops from neuroblast VLPa1 and is part of a male organism." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult male fruitless neuron that develops from neuroblast VLPa1 (Ito et al., 2013; Yu et al., 2013). There are approximately 33 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "male aIP-b neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110585 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -168934,6 +168940,7 @@ synonym: "male AL6b neuron" BROAD [FlyBase:FBrf0211884] synonym: "male fru-AL neuron" BROAD [FlyBase:FBrf0211884] xref: VFB:FBbt_00110589 relationship: RO:0000053 PATO:0000618 ! has characteristic bilateral +relationship: RO:0000053 PATO:0002451 ! has characteristic sexually dimorphic property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-07-25T18:37:08Z" xsd:dateTime @@ -168960,7 +168967,7 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T18:37:08Z" xsd:dateTim [Term] id: FBbt:00110591 name: adult fruitless aIP-e (male) neuron -def: "Adult male fruitless neuron with its soma lateral to the lateral horn, ventral to aSP-k (aSP8), and arborization only in the ipsilateral hemisphere, including the lateral horn (Yu et al., 2010). It develops from neuroblast BLAv2 (VLPl2) (Ito et al., 2013)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult male fruitless neuron with its soma lateral to the lateral horn, ventral to aSP-k (aSP8), and arborization only in the ipsilateral hemisphere, including the lateral horn (Yu et al., 2010). It develops from neuroblast BLAv2 (VLPl2) (Ito et al., 2013). There are approximately 27 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "adult male fruitless aSP9 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "male aIP-e neuron" EXACT [FlyBase:FBrf0211926] synonym: "male AL6a neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211884] @@ -178387,7 +178394,7 @@ property_value: http://purl.org/dc/terms/date "2015-11-28T14:50:59Z" xsd:dateTim [Term] id: FBbt:00111305 name: adult dorsal posterior Ilp7 (male) neuron -def: "Male version of the adult dorsal posterior Ilp7 neuron, which expresses the male isoform of fruitless. This is a serotonergic neuron that innervates the seminal vesicle. There are 4 of these neurons per organism, which are a subset of the serotonergic abdominal giant neurons. These cells are generated by post-embryonic neurogenesis in the late third instar larva. Unlike the female version, this cell is not a motor neuron and expression of postsynaptic glutamate receptors is much lower." [FlyBase:FBrf0222499] +def: "Male version of the adult dorsal posterior Ilp7 neuron, which expresses the male isoform of fruitless (Castellanos et al., 2013). It is a serotonergic neuron that innervates the seminal vesicle (Castellanos et al., 2013). There are 4 of these neurons per organism, which are a subset of the serotonergic abdominal giant neurons (Castellanos et al., 2013). Unlike the female version, this cell is not a motor neuron and expression of postsynaptic glutamate receptors is much lower (Castellanos et al., 2013)." [FlyBase:FBrf0222499] comment: They also express fruitless (FBgn0004652) but not doublesex (FBgn0000504). The expression of Bruchpilot was used to reveal presynaptic terminals (Castellanos et al., 2013). May be equivalent to or overlap with serotonergic abdominal giant (male) neuron 1 - FBbt:00048428 - https://orcid.org/0000-0002-1373-1705. subset: cur synonym: "adult male Ilp7 posterior abdominal ganglion neuron" EXACT [] From 3f52291aecef27c6bf7ccd70ce67baddd3c7f4d5 Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 4 Dec 2023 10:04:15 +0000 Subject: [PATCH 2/7] fru neuron def improvements --- src/ontology/fbbt-edit.obo | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/src/ontology/fbbt-edit.obo b/src/ontology/fbbt-edit.obo index e014d8285..93a3a08be 100644 --- a/src/ontology/fbbt-edit.obo +++ b/src/ontology/fbbt-edit.obo @@ -167094,7 +167094,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110453 name: adult fruitless aSP-c neuron -def: "Fruitless neuron belonging to the adult fruitless aSP-c lineage clone that develops from neuroblast SMPad4." [FlyBase:FBrf0211926, FlyBase:FBrf0221438] +def: "Adult fruitless neuron that develops from neuroblast SMPad4 (Ito et al., 2013). There are approximately 3 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221438] synonym: "aSP-c neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110453 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -167143,7 +167143,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110457 name: adult fruitless aSP-e neuron -def: "Fruitless neuron belonging to the adult fruitless aSP-e lineage clone." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the anterior superior protocerebrum (Cachero et al., 2010). There is approximately one of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "aSP-e neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110457 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -167320,7 +167320,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110469 name: adult fruitless aSP-k (female) neuron -def: "Adult fruitless neuron of the female with its cell body lateral to the lateral horn, dendritic arborization in the lateral horn and axonal projections to the lateral protocerebral complex (Yu et al., 2010). It receives input in the wedge and outputs onto and inhibits the female doublesex pMN2 (vpoDN) neuron (Wang et al., 2021). Most of its synaptic terminals are in the anterior ventrolateral protocerebrum (Yu et al., 2010; Baker et al., 2022). A projection also extends across the midline (Yu et al., 2010; Baker et al., 2022). It preferentially responds to male sine song, rather than pulse song (Baker et al., 2022)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221438, FlyBase:FBrf0247919, FlyBase:FBrf0254226] +def: "Adult fruitless neuron of the female with its cell body lateral to the lateral horn, dendritic arborization in the lateral horn and axonal projections to the lateral protocerebral complex (Yu et al., 2010). It receives input in the wedge and outputs onto and inhibits the female doublesex pMN2 (vpoDN) neuron (Wang et al., 2021). Most of its synaptic terminals are in the anterior ventrolateral protocerebrum (Yu et al., 2010; Baker et al., 2022). A projection also extends across the midline (Yu et al., 2010; Baker et al., 2022). It preferentially responds to male sine song, rather than pulse song (Baker et al., 2022). There are approximately 20 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221438, FlyBase:FBrf0247919, FlyBase:FBrf0254226] comment: Wang et al. (2020) - FBrf0247919 states that aSP-k neurons are probably a subset of vpoIN. Based on Hemibrain data, all these (aSP8) cells cross the midline, so probably correspond to the 'commissural' subset of vpoIN neurons, AVLP_pr02, in Baker et al. (2022) - FBrf0254226. synonym: "adult female fruitless aSP8 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "AVLP_pr02" EXACT [FlyBase:FBrf0254226] @@ -167361,7 +167361,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110471 name: adult fruitless aSP-l neuron -def: "Adult fruitless neuron that develops from neuroblast SLPav2 (Ito et al., 2013; Yu et al., 2013). It has its cell body located anteroventral to the lateral horn, almost on the surface of the ventrolateral protocerebrum (Yu et al., 2010). The neurite makes a distinct turn, travels on the surface of the neuropil around the lateral horn to the posterior superior lateral protocerebrum to form broad superficial web-like arborizations in the posterior superior medial protocerebrum (PSMP) (Yu et al., 2010). It also crosses the midline and arborizes in a small region at the medial end of the contralateral PSMP (Yu et al,. 2010)." [FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron that develops from neuroblast SLPav2 (Ito et al., 2013; Yu et al., 2013). It has its cell body located anteroventral to the lateral horn, almost on the surface of the ventrolateral protocerebrum (Yu et al., 2010). The neurite makes a distinct turn, travels on the surface of the neuropil around the lateral horn to the posterior superior lateral protocerebrum to form broad superficial web-like arborizations in the posterior superior medial protocerebrum (PSMP) (Yu et al., 2010). It also crosses the midline and arborizes in a small region at the medial end of the contralateral PSMP (Yu et al,. 2010). There are approximately 24 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "adult fruitless aSP3 neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211884] synonym: "adult fruitless aSP7 neuron" EXACT [FlyBase:FBrf0211884] xref: VFB:FBbt_00110471 @@ -167386,7 +167386,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110473 name: adult fruitless aSP-m neuron -def: "Fruitless neuron belonging to the adult fruitless aSP-m lineage clone that develops from neuroblast SLPa&l1." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron that develops from neuroblast SLPa&l1 (Ito et al., 2013; Yu et al., 2013). There are approximately 6 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "aSP-m neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110473 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -169209,7 +169209,7 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T20:02:17Z" xsd:dateTim [Term] id: FBbt:00110607 name: adult fruitless aSP-k (male) neuron -def: "Adult fruitless neuron of the male with its cell body lateral to the lateral horn, dendritic arborization in the lateral horn and axonal projections to the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221438] +def: "Adult fruitless neuron of the male with its cell body lateral to the lateral horn, dendritic arborization in the lateral horn and axonal projections to the lateral protocerebral complex (Yu et al., 2010). There are approximately 29 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221438] synonym: "adult male fruitless aSP8 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "male aSP-k neuron" EXACT [FlyBase:FBrf0211926] synonym: "male aSP3c neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211926] From e5abf1d68381712ca4caedbf940497b85f5e2f5c Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 4 Dec 2023 11:10:54 +0000 Subject: [PATCH 3/7] update fru defs --- src/ontology/fbbt-edit.obo | 17 +++++++++-------- .../data/logical-only/neuronOfFruCluster.tsv | 4 ++-- 2 files changed, 11 insertions(+), 10 deletions(-) diff --git a/src/ontology/fbbt-edit.obo b/src/ontology/fbbt-edit.obo index 93a3a08be..dd10b67c5 100644 --- a/src/ontology/fbbt-edit.obo +++ b/src/ontology/fbbt-edit.obo @@ -72173,7 +72173,7 @@ property_value: http://purl.org/dc/terms/date "2021-01-08T08:38:41Z" xsd:dateTim [Term] id: FBbt:00047221 name: adult fruitless mSG neuron -def: "Neuron of the adult brain that expresses fruitless, whose cell body is located in the ventral medial gnathal ganglion. These cells project into the tritocerebrum and descend into the ventral nerve cord." [FlyBase:FBrf0224741] +def: "Neuron of the adult brain that expresses fruitless, whose cell body is located in the ventral medial gnathal ganglion (Tran et al., 2014). It projects to the tritocerebrum and descends to the ventral nerve cord (Tran et al., 2014). There are two of these cells per brain (Tran et al., 2014)." [FlyBase:FBrf0224741] xref: VFB:FBbt_00047221 relationship: RO:0013002 FBbt:00007147 ! receives synaptic input in region adult tritocerebrum relationship: RO:0013002 FBbt:00110639 ! receives synaptic input in region adult subesophageal zone @@ -167561,9 +167561,10 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110485 name: adult fruitless pIP-d neuron -def: "Fruitless neuron belonging to the adult fruitless pIP-d lineage clone that develops from neuroblast VPNd2." [FlyBase:FBrf0205974, FlyBase:FBrf0211926, FlyBase:FBrf0221438] -synonym: "Ld neuron" EXACT [FlyBase:FBrf0205974] -synonym: "Lv1 neuron" EXACT [FlyBase:FBrf0205974] +def: "Adult fruitless neuron with its soma in the lateral brain (Kimura et al., 2005). It develops from neuroblast VPNd2 (Ito et al., 2013)." [FlyBase:FBrf0205974, FlyBase:FBrf0211926, FlyBase:FBrf0221438] +synonym: "adult fruitless Lv1 + Ld" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211926] +synonym: "Ld neuron" NARROW [FlyBase:FBrf0205974, FlyBase:FBrf0211926] +synonym: "Lv1 neuron" NARROW [FlyBase:FBrf0205974, FlyBase:FBrf0211926] synonym: "pIP-d neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110485 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -167624,7 +167625,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110489 name: adult fruitless pIP-f neuron -def: "Fruitless neuron belonging to the adult fruitless pIP-f lineage clone." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the posterior inferior protocerebrum (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "pIP-f neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110489 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -167704,7 +167705,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110495 name: adult fruitless pIP-i neuron -def: "Fruitless neuron belonging to the adult fruitless pIP-i lineage clone." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the posterior inferior protocerebrum (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "pIP-i neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110495 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -167830,7 +167831,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110505 name: adult fruitless pMP-d neuron -def: "Fruitless neuron belonging to the adult fruitless pMP-d lineage clone." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the posterior brain (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "pMP-d neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110505 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -167911,7 +167912,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110511 name: adult fruitless pMP-g neuron -def: "Fruitless neuron belonging to the adult fruitless pMP-g lineage clone." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the posterior brain (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "pMP-g neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110511 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 diff --git a/src/patterns/data/logical-only/neuronOfFruCluster.tsv b/src/patterns/data/logical-only/neuronOfFruCluster.tsv index f7aaeb24d..be907fd34 100644 --- a/src/patterns/data/logical-only/neuronOfFruCluster.tsv +++ b/src/patterns/data/logical-only/neuronOfFruCluster.tsv @@ -48,10 +48,10 @@ FBbt:00110497 adult fruitless pIP-j neuron FBbt:00052688 DM5 secondary intermedi FBbt:00110499 adult fruitless pMP-a (female) neuron FBbt:00050018 neuroblast DM1 FBbt:00110498 adult fruitless pMP-a (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110501 adult fruitless pMP-b (female) neuron FBbt:00050121 neuroblast DM2 FBbt:00110500 adult fruitless pMP-b (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110503 adult fruitless pMP-c (female) neuron FBbt:00110502 adult fruitless pMP-c (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind -FBbt:00110505 adult fruitless pMP-d neuron FBbt:00110504 adult fruitless pMP-d lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100213 cell body rind of adult inferior neuropils +FBbt:00110505 adult fruitless pMP-d neuron FBbt:00110504 adult fruitless pMP-d lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110507 adult fruitless pMP-e (female) neuron FBbt:00050252 neuroblast DM4 FBbt:00110506 adult fruitless pMP-e (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100213 cell body rind of adult inferior neuropils FBbt:00110509 adult fruitless pMP-f (female) neuron FBbt:00050142 neuroblast DM6 FBbt:00110508 adult fruitless pMP-f (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind -FBbt:00110511 adult fruitless pMP-g neuron FBbt:00110510 adult fruitless pMP-g lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100213 cell body rind of adult inferior neuropils +FBbt:00110511 adult fruitless pMP-g neuron FBbt:00110510 adult fruitless pMP-g lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110513 adult fruitless pSG-a neuron FBbt:00110512 adult fruitless pSG-a lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion FBbt:00110515 adult fruitless pSG-b neuron FBbt:00110514 adult fruitless pSG-b lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion FBbt:00110517 adult fruitless pSG-c neuron FBbt:00110516 adult fruitless pSG-c lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion From 1f0404a2d25a1c9b01ef09c506e2dc3cd087c2ff Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 4 Dec 2023 11:42:38 +0000 Subject: [PATCH 4/7] fix lateral complex references --- src/ontology/fbbt-edit.obo | 61 +++++++++++++++++++------------------- 1 file changed, 30 insertions(+), 31 deletions(-) diff --git a/src/ontology/fbbt-edit.obo b/src/ontology/fbbt-edit.obo index dd10b67c5..59c3d6e1b 100644 --- a/src/ontology/fbbt-edit.obo +++ b/src/ontology/fbbt-edit.obo @@ -108201,7 +108201,7 @@ property_value: http://purl.org/dc/terms/date "2021-02-12T10:33:16Z" xsd:dateTim [Term] id: FBbt:00049909 name: adult fruitless aSP-g neuron -def: "Fruitless-expressing neuron with its soma in the adult anterior superior protocerebrum (Cachero et al., 2010). There are approximately 13 of these neurons per hemisphere in both males and females (Cachero et al., 2010). They have sexually dimorphic arbors in the lateral complex (Cachero et al., 2010; Yu et al., 2010; Kohl et al., 2013) and respond to different odor stimuli in each sex (Kohl et al., 2013)." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0223724, FlyBase:FBrf0246460] +def: "Fruitless-expressing neuron with its soma in the adult anterior superior protocerebrum (Cachero et al., 2010). There are approximately 13 of these neurons per hemisphere in both males and females (Cachero et al., 2010). They have sexually dimorphic arbors in the lateral protocerebral complex (Cachero et al., 2010; Yu et al., 2010; Kohl et al., 2013) and respond to different odor stimuli in each sex (Kohl et al., 2013)." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0223724, FlyBase:FBrf0246460] comment: AD1e1 referred to as a fruitless aSP-g neuron in Dolan et al. (2019) and is a synonym for some aSP-g1, aSP-g2 and SLP005 neurons in neuprint (neuprint.janelia.org) hemibrain 1.2.1 notes. Bates (2020) lists two different neuroblasts of origin (DPLal2 and DPLal3) for different aSP-g1 individuals. LHAD1e2 mapped to some aSP-g2 and aSP-g3 neurons in hemibrain 1.2.1 notes. synonym: "adult AD1e1 neuron" RELATED [FlyBase:FBrf0242477] synonym: "adult anterior dorsal tract 1 neuron e1" RELATED [FlyBase:FBrf0242477] @@ -108215,7 +108215,7 @@ synonym: "LHAD1e1" RELATED [FlyBase:FBrf0246460] synonym: "LHAD1e2" RELATED [] xref: VFB:FBbt_00049909 relationship: RO:0000053 PATO:0002451 ! has characteristic sexually dimorphic -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705 property_value: http://purl.org/dc/terms/date "2020-10-30T12:00:09Z" xsd:dateTime @@ -166582,14 +166582,14 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110417 name: adult fruitless aDT-b (female) neuron -def: "Adult female fruitless neuron that develops from neuroblast CREa1 (Ito et al., 2013), has its soma dorsal to the antennal lobe and contralateral dendritic arbors in the subesophageal zone (Yu et al., 2010). It projects dorsally to terminate in the lateral complex (Yu et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult female fruitless neuron that develops from neuroblast CREa1 (Ito et al., 2013), has its soma dorsal to the antennal lobe and contralateral dendritic arbors in the subesophageal zone (Yu et al., 2010). It projects dorsally to terminate in the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "adult female fruitless aDT2 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "adult female fruitless mAL neuron" BROAD [FlyBase:FBrf0205974, FlyBase:FBrf0211884] synonym: "female aDT-b neuron" EXACT [FlyBase:FBrf0211926] synonym: "female fru-mAL neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211884, FlyBase:FBrf0211926] xref: VFB:FBbt_00110417 relationship: RO:0000053 PATO:0000618 ! has characteristic bilateral -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum relationship: RO:0013002 FBbt:00110639 ! receives synaptic input in region adult subesophageal zone property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167037,12 +167037,12 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110449 name: adult fruitless aSP-a (female) neuron -def: "Adult female fruitless-expressing neuron that develops from the SMPad1 neuroblast (Ito et al., 2013; Yu et al., 2013). It has its soma in the pars intercerebralis and projects laterally, arborizing in the lateral complex (Yu et al., 2010). There are approximately 23 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult female fruitless-expressing neuron that develops from the SMPad1 neuroblast (Ito et al., 2013; Yu et al., 2013). It has its soma in the pars intercerebralis and projects laterally, arborizing in the lateral protocerebral complex (Yu et al., 2010). There are approximately 23 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "female aSP-a neuron" EXACT [FlyBase:FBrf0211926] synonym: "female aSP2 neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211926] synonym: "female fru-aSP2 neuron" EXACT [FlyBase:FBrf0128543, FlyBase:FBrf0211926] xref: VFB:FBbt_00110449 -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167294,7 +167294,6 @@ def: "Adult fruitless neuron that develops from neuroblast DALcl2 (AOTUv4) (Ito comment: Cachero et al. (2010) map Yu et al. (2010) - FBrf0211884 aSP12 to aSP-j, but Yu et al. (2010) map aSP12 to aDT-d. synonym: "adult fruitless aSP12 neuron" RELATED [FlyBase:FBrf0211926] xref: VFB:FBbt_00110467 -relationship: RO:0013002 FBbt:00040001 ! receives synaptic input in region lateral complex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167336,7 +167335,7 @@ relationship: RO:0002216 GO:0007605 ! capable of part of sensory perception of s relationship: RO:0013001 FBbt:00040043 ! has synaptic IO in region anterior ventrolateral protocerebrum relationship: RO:0013002 FBbt:00007053 ! receives synaptic input in region adult lateral horn relationship: RO:0013002 FBbt:00045027 ! receives synaptic input in region wedge -relationship: RO:0013003 FBbt:00040001 ! sends synaptic output to region lateral complex +relationship: RO:0013003 FBbt:00007145 ! sends synaptic output to region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167470,14 +167469,14 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110479 name: adult fruitless pIP-a (female) neuron -def: "Adult female fruitless neuron that develops from neuroblast DL2 (CP3) (Ren et al., 2016) and has its cell body in the posterior inferior protocerebrum (Yu et al., 2010). In the brain, it has arbors in the lateral complex (Yu et al., 2010). It descends to the ventral nerve cord, where it has presynaptic terminals in all three thoracic neuromeres (Cachero et al., 2010; Yu et al., 2010). There are approximately 3 of these cells per hemisphere (Ren et al., 2016)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0233706] +def: "Adult female fruitless neuron that develops from neuroblast DL2 (CP3) (Ren et al., 2016) and has its cell body in the posterior inferior protocerebrum (Yu et al., 2010). In the brain, it has arbors in the lateral protocerebral complex (Yu et al., 2010). It descends to the ventral nerve cord, where it has presynaptic terminals in all three thoracic neuromeres (Cachero et al., 2010; Yu et al., 2010). There are approximately 3 of these cells per hemisphere (Ren et al., 2016)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0233706] comment: Cachero et al. (2010) report 6 cells per hemisphere. synonym: "adult female fruitless pIP1 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "female fru-P neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211926] synonym: "female P2b neuron" EXACT [FlyBase:FBrf0205974] synonym: "female pIP-a neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110479 -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum relationship: RO:0013003 FBbt:00004054 ! sends synaptic output to region prothoracic neuromere relationship: RO:0013003 FBbt:00004059 ! sends synaptic output to region mesothoracic neuromere relationship: RO:0013003 FBbt:00004092 ! sends synaptic output to region metathoracic neuromere @@ -168418,10 +168417,10 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110551 name: adult fruitless pIP2 neuron -def: "Adult fruitless neuron with its cell body in the posterior brain and projections terminating in the lateral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] +def: "Adult fruitless neuron with its cell body in the posterior brain and projections terminating in the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] synonym: "fru-P neuron" BROAD [FlyBase:FBrf0128543] xref: VFB:FBbt_00110551 -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -168481,7 +168480,7 @@ synonym: "male aSP4 neuron of the dopaminergic PAL cluster" NARROW [FlyBase:FBrf xref: VFB:FBbt_00110555 is_a: FBbt:00100215 ! dopaminergic PAL neuron relationship: RO:0000053 PATO:0002451 ! has characteristic sexually dimorphic -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-28T04:10:30Z" xsd:dateTime @@ -168502,7 +168501,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-28T04:10:30Z" xsd:dateTim [Term] id: FBbt:00110557 name: adult fruitless pIP4 neuron -def: "Adult fruitless neuron with its cell body in the lateral posterior brain (Yu et al., 2010). It enters the neuropil through a tract opening below that of plP6 (pIP-e) (Yu et a., 2010). Within the neuropil, the neurite travels medially to towards the medial ring of the lateral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] +def: "Adult fruitless neuron with its cell body in the lateral posterior brain (Yu et al., 2010). It enters the neuropil through a tract opening below that of plP6 (pIP-e) (Yu et a., 2010). Within the neuropil, the neurite travels medially to towards the medial ring of the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] synonym: "fru-P neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211884] synonym: "pIP4 neuron" EXACT [FlyBase:FBrf0211884] xref: VFB:FBbt_00110557 @@ -168787,14 +168786,14 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T17:54:25Z" xsd:dateTim [Term] id: FBbt:00110579 name: adult fruitless aDT-b (male) neuron -def: "Adult male fruitless neuron that develops from neuroblast CREa1 (Ito et al., 2013), has its soma dorsal to the antennal lobe and bilateral dendritic arbors in the subesophageal zone (Yu et al., 2010). It projects dorsally to terminate in the lateral complex (Yu et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult male fruitless neuron that develops from neuroblast CREa1 (Ito et al., 2013), has its soma dorsal to the antennal lobe and bilateral dendritic arbors in the subesophageal zone (Yu et al., 2010). It projects dorsally to terminate in the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "adult male fru-mAL neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "adult male fruitless aDT2 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "adult male fruitless mAL neuron" BROAD [FlyBase:FBrf0205974, FlyBase:FBrf0211884] synonym: "male aDT-b neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110579 relationship: RO:0000053 PATO:0000618 ! has characteristic bilateral -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum relationship: RO:0013002 FBbt:00110639 ! receives synaptic input in region adult subesophageal zone property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-07-25T17:54:25Z" xsd:dateTime @@ -169028,12 +169027,12 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T19:28:10Z" xsd:dateTim [Term] id: FBbt:00110595 name: adult fruitless aSP-a (male) neuron -def: "Adult male fruitless-expressing neuron that develops from the SMPad1 neuroblast (Ito et al., 2013; Yu et al., 2013). It has its soma in the pars intercerebralis and projects laterally, arborizing extensively in the lateral complex (Yu et al., 2010). Many of these cells are activated by the presence of females, but not males (Takayanagi-Kiya and Kiya, 2019). There are approximately 50-60 of these cells per hemisphere (Lee et al., 2000; Cachero et al., 2010)." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0241873] +def: "Adult male fruitless-expressing neuron that develops from the SMPad1 neuroblast (Ito et al., 2013; Yu et al., 2013). It has its soma in the pars intercerebralis and projects laterally, arborizing extensively in the lateral protocerebral complex (Yu et al., 2010). Many of these cells are activated by the presence of females, but not males (Takayanagi-Kiya and Kiya, 2019). There are approximately 50-60 of these cells per hemisphere (Lee et al., 2000; Cachero et al., 2010)." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438, FlyBase:FBrf0241873] synonym: "adult male fru-aSP2 neuron" EXACT [FlyBase:FBrf0128543, FlyBase:FBrf0211926] synonym: "adult male fruitless aSP2 neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "male aSP-a neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110595 -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-07-25T19:28:10Z" xsd:dateTime @@ -169218,7 +169217,7 @@ synonym: "male fru-aSP3 neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211926] synonym: "male LC1 neuron" EXACT [FlyBase:FBrf0212443] xref: VFB:FBbt_00110607 relationship: RO:0013002 FBbt:00007053 ! receives synaptic input in region adult lateral horn -relationship: RO:0013003 FBbt:00040001 ! sends synaptic output to region lateral complex +relationship: RO:0013003 FBbt:00007145 ! sends synaptic output to region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-07-25T20:02:17Z" xsd:dateTime @@ -169246,14 +169245,14 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T20:29:41Z" xsd:dateTim [Term] id: FBbt:00110609 name: adult fruitless pIP-a (male) neuron -def: "Adult male fruitless neuron that develops from neuroblast DL2 (CP3) (Ren et al., 2016) and has its cell body in the posterior inferior protocerebrum (Yu et al., 2010). In the brain, it has arbors in the lateral complex (Yu et al., 2010). It descends to the ventral nerve cord, where it has presynaptic terminals in all three thoracic neuromeres (Cachero et al., 2010; Yu et al., 2010). There are approximately 22 of these cells per hemisphere (Ren et al., 2016)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0233706] +def: "Adult male fruitless neuron that develops from neuroblast DL2 (CP3) (Ren et al., 2016) and has its cell body in the posterior inferior protocerebrum (Yu et al., 2010). In the brain, it has arbors in the lateral protocerebral complex (Yu et al., 2010). It descends to the ventral nerve cord, where it has presynaptic terminals in all three thoracic neuromeres (Cachero et al., 2010; Yu et al., 2010). There are approximately 22 of these cells per hemisphere (Ren et al., 2016)." [FlyBase:FBrf0205974, FlyBase:FBrf0211884, FlyBase:FBrf0211926, FlyBase:FBrf0233706] comment: Cachero et al. (2010) report 14 cells per hemisphere. synonym: "adult male fruitless pIP1 neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] synonym: "male fru-P neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf0211926] synonym: "male P2b neuron" EXACT [FlyBase:FBrf0205974] synonym: "male pIP-a neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110609 -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum relationship: RO:0013003 FBbt:00004054 ! sends synaptic output to region prothoracic neuromere relationship: RO:0013003 FBbt:00004059 ! sends synaptic output to region mesothoracic neuromere relationship: RO:0013003 FBbt:00004092 ! sends synaptic output to region metathoracic neuromere @@ -172033,12 +172032,12 @@ property_value: http://purl.org/dc/terms/date "2014-04-22T16:51:35Z" xsd:dateTim [Term] id: FBbt:00110858 name: adult fruitless vPR1 neuron -def: "Adult fruitless neuron with its cell body located at the anterior of the prothoracic neuromere, close to the midline (Yu et al., 2010). It enters the anterior prothoracic neuromere and projects posteriorly forming arborizations in an 'A' shape extending to the anterior of the mesothoracic neuromere (Yu et al., 2010). A branch projects to the brain to form axonal arbors in the lateral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] +def: "Adult fruitless neuron with its cell body located at the anterior of the prothoracic neuromere, close to the midline (Yu et al., 2010). It enters the anterior prothoracic neuromere and projects posteriorly forming arborizations in an 'A' shape extending to the anterior of the mesothoracic neuromere (Yu et al., 2010). A branch projects to the brain to form axonal arbors in the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] synonym: "adult fruitless vPr-a neuron" EXACT [FlyBase:FBrf0211884, FlyBase:FBrf0211926] xref: VFB:FBbt_00110858 relationship: RO:0013001 FBbt:00004054 ! has synaptic IO in region prothoracic neuromere relationship: RO:0013001 FBbt:00004059 ! has synaptic IO in region mesothoracic neuromere -relationship: RO:0013003 FBbt:00040001 ! sends synaptic output to region lateral complex +relationship: RO:0013003 FBbt:00007145 ! sends synaptic output to region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2014-04-22T16:51:35Z" xsd:dateTime @@ -176285,7 +176284,7 @@ property_value: http://purl.org/dc/terms/date "2015-08-07T15:17:22Z" xsd:dateTim [Term] id: FBbt:00111162 name: adult fruitless pSP5 neuron -def: "Adult fruitless neuron with its cell body located lateral to the mushroom body calyx, below the fruitless pSP4 cluster (Yu et al., 2010). It projects medially, entering and crossing the tract containing the mushroom body pedunculus and continuing towards the lateral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] +def: "Adult fruitless neuron with its cell body located lateral to the mushroom body calyx, below the fruitless pSP4 cluster (Yu et al., 2010). It projects medially, entering and crossing the tract containing the mushroom body pedunculus and continuing towards the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] synonym: "fru-P neuron" BROAD [FlyBase:FBrf0128543] xref: VFB:FBbt_00111162 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -176308,11 +176307,11 @@ property_value: http://purl.org/dc/terms/date "2015-08-07T15:17:22Z" xsd:dateTim [Term] id: FBbt:00111164 name: adult fruitless pMP1 neuron -def: "Adult fruitless neuron with its cell body located medial to the mushroom body calyx (Yu et al., 2010). It projects medially then dorsally forming a fork at the pars intercerebralis (Yu et al., 2010). A lateral branch arborizes in the lateral complex and a ventral branch follows the median bundle before descending into the ventral nerve cord and terminating in the abdominal neuromere (Yu et al., 2010)." [FlyBase:FBrf0211884] +def: "Adult fruitless neuron with its cell body located medial to the mushroom body calyx (Yu et al., 2010). It projects medially then dorsally forming a fork at the pars intercerebralis (Yu et al., 2010). A lateral branch arborizes in the lateral protocerebral complex and a ventral branch follows the median bundle before descending into the ventral nerve cord and terminating in the abdominal neuromere (Yu et al., 2010)." [FlyBase:FBrf0211884] synonym: "fru-SP2 neuron" BROAD [FlyBase:FBrf0128543] xref: VFB:FBbt_00111164 relationship: RO:0002101 FBbt:00049214 ! fasciculates with median bundle -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum relationship: RO:0013001 FBbt:00110173 ! has synaptic IO in region adult abdominal neuromere property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2015-08-07T15:17:22Z" xsd:dateTime @@ -176414,12 +176413,12 @@ property_value: http://purl.org/dc/terms/date "2015-08-07T15:17:22Z" xsd:dateTim [Term] id: FBbt:00111172 name: adult fruitless pMP3 neuron -def: "Adult fruitless neuron with its cell body located medial to the mushroom body calyx (Yu et al., 2010). It forms a dorsal branch soon after entering the neuropil and projects to the lateral complex (Yu et al., 2010). A ventral branch crosses the midline to arborize in a region near the ventral medial antennal lobe (Yu et al., 2010)." [FlyBase:FBrf0211884] +def: "Adult fruitless neuron with its cell body located medial to the mushroom body calyx (Yu et al., 2010). It forms a dorsal branch soon after entering the neuropil and projects to the lateral protocerebral complex (Yu et al., 2010). A ventral branch crosses the midline to arborize in a region near the ventral medial antennal lobe (Yu et al., 2010)." [FlyBase:FBrf0211884] synonym: "fru-SP2 neuron" BROAD [FlyBase:FBrf0128543] synonym: "pMP3 neuron" EXACT [FlyBase:FBrf0211884] xref: VFB:FBbt_00111172 relationship: RO:0000053 PATO:0000618 ! has characteristic bilateral -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2015-08-07T15:17:22Z" xsd:dateTime @@ -176494,10 +176493,10 @@ property_value: http://purl.org/dc/terms/date "2015-08-07T15:17:22Z" xsd:dateTim [Term] id: FBbt:00111178 name: adult fruitless pSP2 neuron -def: "Adult fruitless neuron with its cell body located lateral to the mushroom body calyx (Yu et al., 2010). It enters the neuropil close to a small ridge medial to the posterior lateral horn and projects medially towards the lateral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] +def: "Adult fruitless neuron with its cell body located lateral to the mushroom body calyx (Yu et al., 2010). It enters the neuropil close to a small ridge medial to the posterior lateral horn and projects medially towards the lateral protocerebral complex (Yu et al., 2010)." [FlyBase:FBrf0211884] synonym: "fru-P neuron" BROAD [FlyBase:FBrf0128543] xref: VFB:FBbt_00111178 -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2015-08-07T15:17:22Z" xsd:dateTime @@ -176763,7 +176762,7 @@ xref: VFB:FBbt_00111198 is_a: FBbt:00100215 ! dopaminergic PAL neuron relationship: RO:0000053 PATO:0000618 ! has characteristic bilateral relationship: RO:0000053 PATO:0002451 ! has characteristic sexually dimorphic -relationship: RO:0013001 FBbt:00040001 ! has synaptic IO in region lateral complex +relationship: RO:0013001 FBbt:00007145 ! has synaptic IO in region adult protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2015-08-07T16:55:57Z" xsd:dateTime From 48906e05792941c1a734733112537cfe7d5a9581 Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 4 Dec 2023 13:05:43 +0000 Subject: [PATCH 5/7] fru def updates --- src/ontology/fbbt-edit.obo | 29 ++++++++++++++----- .../data/logical-only/neuronOfFruCluster.tsv | 8 ++--- 2 files changed, 26 insertions(+), 11 deletions(-) diff --git a/src/ontology/fbbt-edit.obo b/src/ontology/fbbt-edit.obo index 59c3d6e1b..9a97365f0 100644 --- a/src/ontology/fbbt-edit.obo +++ b/src/ontology/fbbt-edit.obo @@ -167143,9 +167143,12 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110457 name: adult fruitless aSP-e neuron -def: "Adult fruitless neuron with its soma in the anterior superior protocerebrum (Cachero et al., 2010). There is approximately one of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the anterior superior protocerebrum (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010). It has terminals in the superior intermediate and medial protocerebrum (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Arborization regions determined from Cachero et al. (2010) data in Virtual Fly Brain. synonym: "aSP-e neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110457 +relationship: RO:0013001 FBbt:00007055 ! has synaptic IO in region superior medial protocerebrum +relationship: RO:0013001 FBbt:00045032 ! has synaptic IO in region superior intermediate protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167830,9 +167833,13 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110505 name: adult fruitless pMP-d neuron -def: "Adult fruitless neuron with its soma in the posterior brain (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the posterior brain (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010). It has arborization in the ipsilateral posterior lateral protocerebrum and anterior ventrolateral protocerebrum (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Arborization regions determined from Cachero et al. (2010) data in Virtual Fly Brain. synonym: "pMP-d neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110505 +relationship: RO:0000053 PATO:0000634 ! has characteristic unilateral +relationship: RO:0013001 FBbt:00040043 ! has synaptic IO in region anterior ventrolateral protocerebrum +relationship: RO:0013001 FBbt:00040044 ! has synaptic IO in region posterior lateral protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167934,10 +167941,13 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110513 name: adult fruitless pSG-a neuron -def: "Fruitless neuron belonging to the adult fruitless pSG-a lineage clone." [FlyBase:FBrf0128543, FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the lateral subesophageal zone (Cachero et al., 2010). It loops through the subesophageal zone and arborizes in the ipsilateral saddle (Cachero et al., 2010). There are approximately six of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Saddle arborization visualized from Cachero et al. (2010) data in Virtual Fly Brain. synonym: "fru-SG neuron" BROAD [FlyBase:FBrf0128543] synonym: "pSG-a neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110513 +relationship: RO:0000053 PATO:0000634 ! has characteristic unilateral +relationship: RO:0013001 FBbt:00045048 ! has synaptic IO in region saddle property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167958,10 +167968,11 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110515 name: adult fruitless pSG-b neuron -def: "Fruitless neuron belonging to the adult fruitless pSG-b lineage clone." [FlyBase:FBrf0128543, FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the gnathal ganglion and arborization mainly in the ipsilateral dorsal subesophageal zone (Cachero et al., 2010). There are approximately 12 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "fru-SG neuron" BROAD [FlyBase:FBrf0128543] synonym: "pSG-b neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110515 +relationship: RO:0013001 FBbt:00110639 ! has synaptic IO in region adult subesophageal zone property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -167982,10 +167993,12 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110517 name: adult fruitless pSG-c neuron -def: "Fruitless neuron belonging to the adult fruitless pSG-c lineage clone." [FlyBase:FBrf0128543, FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the lateral subesophageal zone and arborization mainly in the saddle (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Saddle arborization visualized from Cachero et al. (2010) data in Virtual Fly Brain. synonym: "fru-SG neuron" BROAD [FlyBase:FBrf0128543] synonym: "pSG-c neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110517 +relationship: RO:0013001 FBbt:00045048 ! has synaptic IO in region saddle property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -168006,7 +168019,8 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110519 name: adult fruitless pSG-d neuron -def: "Fruitless neuron belonging to the adult fruitless pSG-d lineage clone." [FlyBase:FBrf0128543, FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the ventral subesophageal zone (Cachero et al., 2010). It projects dorsally, then turns laterally to arborize in a lateral inferior region of the brain (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Cachero et al. (2010) show medial somas, so unclear if these are unpaired cells, i.e. 8 cells per brain or 8 cells per hemisphere. synonym: "fru-SG neuron" BROAD [FlyBase:FBrf0128543] synonym: "pSG-d neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110519 @@ -168030,7 +168044,8 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110521 name: adult fruitless pSG-e neuron -def: "Fruitless neuron belonging to the adult fruitless pSG-e lineage clone." [FlyBase:FBrf0128543, FlyBase:FBrf0211926] +def: "Adult fruitless neuron with its soma in the ventral subesophageal zone (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Cachero et al. (2010) show a medial soma, so unclear if it is unpaired, i.e. 1 cell per brain or 1 cell per hemisphere. synonym: "fru-SG neuron" BROAD [FlyBase:FBrf0128543] synonym: "pSG-e neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110521 diff --git a/src/patterns/data/logical-only/neuronOfFruCluster.tsv b/src/patterns/data/logical-only/neuronOfFruCluster.tsv index be907fd34..0ef9fd7df 100644 --- a/src/patterns/data/logical-only/neuronOfFruCluster.tsv +++ b/src/patterns/data/logical-only/neuronOfFruCluster.tsv @@ -52,11 +52,11 @@ FBbt:00110505 adult fruitless pMP-d neuron FBbt:00110504 adult fruitless pMP-d FBbt:00110507 adult fruitless pMP-e (female) neuron FBbt:00050252 neuroblast DM4 FBbt:00110506 adult fruitless pMP-e (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100213 cell body rind of adult inferior neuropils FBbt:00110509 adult fruitless pMP-f (female) neuron FBbt:00050142 neuroblast DM6 FBbt:00110508 adult fruitless pMP-f (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110511 adult fruitless pMP-g neuron FBbt:00110510 adult fruitless pMP-g lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind -FBbt:00110513 adult fruitless pSG-a neuron FBbt:00110512 adult fruitless pSG-a lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion +FBbt:00110513 adult fruitless pSG-a neuron FBbt:00110512 adult fruitless pSG-a lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051024 cell body rind of adult lateral gnathal ganglion FBbt:00110515 adult fruitless pSG-b neuron FBbt:00110514 adult fruitless pSG-b lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion -FBbt:00110517 adult fruitless pSG-c neuron FBbt:00110516 adult fruitless pSG-c lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion -FBbt:00110519 adult fruitless pSG-d neuron FBbt:00110518 adult fruitless pSG-d lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion -FBbt:00110521 adult fruitless pSG-e neuron FBbt:00110520 adult fruitless pSG-e lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100210 cell body rind of adult gnathal ganglion +FBbt:00110517 adult fruitless pSG-c neuron FBbt:00110516 adult fruitless pSG-c lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051024 cell body rind of adult lateral gnathal ganglion +FBbt:00110519 adult fruitless pSG-d neuron FBbt:00110518 adult fruitless pSG-d lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051025 cell body rind of adult ventral gnathal ganglion +FBbt:00110521 adult fruitless pSG-e neuron FBbt:00110520 adult fruitless pSG-e lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051025 cell body rind of adult ventral gnathal ganglion FBbt:00110523 adult fruitless pSP-a neuron FBbt:00100595 neuroblast DPLc1 FBbt:00110522 adult fruitless pSP-a lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110525 adult fruitless pSP-b (female) neuron FBbt:00100600 neuroblast DPLl1 FBbt:00110524 adult fruitless pSP-b (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110527 adult fruitless pSP-c neuron FBbt:00100603 neuroblast DPLp1 FBbt:00110526 adult fruitless pSP-c lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind From bfb0469f9571e5df8293453a566cda5346871eff Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 4 Dec 2023 13:29:44 +0000 Subject: [PATCH 6/7] updating fru neuron defs --- src/ontology/fbbt-edit.obo | 17 ++++++++++------- .../data/logical-only/neuronOfFruCluster.tsv | 6 +++--- 2 files changed, 13 insertions(+), 10 deletions(-) diff --git a/src/ontology/fbbt-edit.obo b/src/ontology/fbbt-edit.obo index 9a97365f0..203d7d6b2 100644 --- a/src/ontology/fbbt-edit.obo +++ b/src/ontology/fbbt-edit.obo @@ -168068,7 +168068,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110523 name: adult fruitless pSP-a neuron -def: "Fruitless neuron belonging to the adult fruitless pSP-a lineage clone that develops from neuroblast DPLc1." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron that develops from neuroblast DPLc1 (SMPpd1) (Ito et al., 2013; Yu et al., 2013). There are approximately six of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "pSP-a neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110523 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -168091,7 +168091,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110525 name: adult fruitless pSP-b (female) neuron -def: "Fruitless neuron belonging to the adult fruitless pSP-b (female) lineage clone that develops from neuroblast DPLl1 and is part of a female organism." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult female fruitless neuron that develops from neuroblast DPLl1 (SLPpl1) (Ito et al., 2013; Yu et al., 2013). There are approximately 19 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "female pSP-b neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110525 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -168113,9 +168113,12 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110527 name: adult fruitless pSP-c neuron -def: "Fruitless neuron belonging to the adult fruitless pSP-c lineage clone that develops from neuroblast DPLp1." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron with its soma in the posterior superior protocerebrum (Cachero et al., 2010). There is one of these cells per hemisphere (Cachero et al., 2010). Its arbors are mainly found in the ipsilateral superior lateral protocerebrum (Cachero et al., 2010)." [FlyBase:FBrf0211926] +comment: Arborization regions determined from Cachero et al. (2010) data in Virtual Fly Brain. synonym: "pSP-c neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110527 +relationship: RO:0000053 PATO:0000634 ! has characteristic unilateral +relationship: RO:0013001 FBbt:00007054 ! has synaptic IO in region superior lateral protocerebrum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTime @@ -168164,7 +168167,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110531 name: adult fruitless pSP-d neuron -def: "Fruitless neuron belonging to the adult fruitless pSP-d lineage clone." [FlyBase:FBrf0128543, FlyBase:FBrf0205974, FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron with its soma in the posterior superior protocerebrum (Cachero et al., 2010)." [FlyBase:FBrf0205974, FlyBase:FBrf0211926] synonym: "aSP3b1 neuron" EXACT [FlyBase:FBrf0205974, FlyBase:FBrf0211926] synonym: "fru-aSP3 neuron" BROAD [FlyBase:FBrf0128543, FlyBase:FBrf021192] synonym: "pSP-d neuron" EXACT [FlyBase:FBrf0211926] @@ -168188,7 +168191,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110533 name: adult fruitless pSP-e neuron -def: "Fruitless neuron belonging to the adult fruitless pSP-e lineage clone that develops from neuroblast DPLp1." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron with its soma in the posterior superior protocerebrum (Cachero et al., 2010). There are approximately three of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "pSP-e neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110533 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -168210,7 +168213,7 @@ property_value: http://purl.org/dc/terms/date "2013-05-23T03:45:07Z" xsd:dateTim [Term] id: FBbt:00110535 name: adult fruitless pSP-f neuron -def: "Fruitless neuron belonging to the adult fruitless pSP-f lineage clone that develops from neuroblast LHl3." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult fruitless neuron with its soma in the posterior superior protocerebrum (Cachero et al., 2010). There are approximately two of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926] synonym: "pSP-f neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110535 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 @@ -169520,7 +169523,7 @@ property_value: http://purl.org/dc/terms/date "2013-07-25T20:49:01Z" xsd:dateTim [Term] id: FBbt:00110625 name: adult fruitless pSP-b (male) neuron -def: "Fruitless neuron belonging to the adult fruitless pSP-b (male) lineage clone that develops from neuroblast DPLl1 and is part of a male organism." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] +def: "Adult male fruitless neuron that develops from neuroblast DPLl1 (SLPpl1) (Ito et al., 2013; Yu et al., 2013). There are approximately 31 of these cells per hemisphere (Cachero et al., 2010)." [FlyBase:FBrf0211926, FlyBase:FBrf0221412, FlyBase:FBrf0221438] synonym: "male pSP-b neuron" EXACT [FlyBase:FBrf0211926] xref: VFB:FBbt_00110625 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092 diff --git a/src/patterns/data/logical-only/neuronOfFruCluster.tsv b/src/patterns/data/logical-only/neuronOfFruCluster.tsv index 0ef9fd7df..99145c838 100644 --- a/src/patterns/data/logical-only/neuronOfFruCluster.tsv +++ b/src/patterns/data/logical-only/neuronOfFruCluster.tsv @@ -59,11 +59,11 @@ FBbt:00110519 adult fruitless pSG-d neuron FBbt:00110518 adult fruitless pSG-d FBbt:00110521 adult fruitless pSG-e neuron FBbt:00110520 adult fruitless pSG-e lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051025 cell body rind of adult ventral gnathal ganglion FBbt:00110523 adult fruitless pSP-a neuron FBbt:00100595 neuroblast DPLc1 FBbt:00110522 adult fruitless pSP-a lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110525 adult fruitless pSP-b (female) neuron FBbt:00100600 neuroblast DPLl1 FBbt:00110524 adult fruitless pSP-b (female) lineage clone FBbt:00007011 female organism FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind -FBbt:00110527 adult fruitless pSP-c neuron FBbt:00100603 neuroblast DPLp1 FBbt:00110526 adult fruitless pSP-c lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind +FBbt:00110527 adult fruitless pSP-c neuron FBbt:00110526 adult fruitless pSP-c lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110529 adult fruitless aIP5 neuron FBbt:00110528 adult fruitless aIP5 lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051008 cell body rind of adult lateral anterior ventrolateral protocerebrum FBbt:00110531 adult fruitless pSP-d neuron FBbt:00110530 adult fruitless pSP-d lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind -FBbt:00110533 adult fruitless pSP-e neuron FBbt:00100603 neuroblast DPLp1 FBbt:00110532 adult fruitless pSP-e lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind -FBbt:00110535 adult fruitless pSP-f neuron FBbt:00050255 neuroblast LHl3 FBbt:00110534 adult fruitless pSP-f lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind +FBbt:00110533 adult fruitless pSP-e neuron FBbt:00110532 adult fruitless pSP-e lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind +FBbt:00110535 adult fruitless pSP-f neuron FBbt:00110534 adult fruitless pSP-f lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00111153 adult posterior brain cell body rind FBbt:00110537 adult fruitless aDT1 neuron FBbt:00110536 adult fruitless aDT1 lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00100211 cell body rind of adult antennal lobe FBbt:00110539 adult fruitless aDT4 neuron FBbt:00110538 adult fruitless aDT4 lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051003 cell body rind of adult ventral antennal lobe FBbt:00110541 adult fruitless aDT7 neuron FBbt:00100563 neuroblast BAlp1 FBbt:00110540 adult fruitless aDT7 lineage clone FBbt:00047095 adult neuron http://flybase.org/reports/FBgn0004652 FBbt:00051003 cell body rind of adult ventral antennal lobe From d86545eeb41ff837088e1252f934d8357d1ae1fc Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 4 Dec 2023 13:38:57 +0000 Subject: [PATCH 7/7] update patterns --- src/patterns/definitions.owl | 20 +++++++++----------- 1 file changed, 9 insertions(+), 11 deletions(-) diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index 36a888066..821cc1a16 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-11-30") + +Annotation(owl:versionInfo "2023-12-04") Declaration(Class()) Declaration(Class()) @@ -2541,6 +2541,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -19021,7 +19022,7 @@ SubClassOf( ObjectSomeValuesFrom(< SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () @@ -19046,14 +19047,14 @@ SubClassOf( ObjectSomeValuesFrom(< SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () @@ -19067,21 +19068,21 @@ SubClassOf( ObjectSomeValuesFrom(< SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () @@ -19106,7 +19107,6 @@ SubClassOf( ObjectSomeValuesFrom(< SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () @@ -19128,7 +19128,6 @@ SubClassOf( ObjectSomeValuesFrom(< SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: () @@ -19136,7 +19135,6 @@ SubClassOf( ObjectSomeValuesFrom(< SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: ()