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Meshinchi Lab Data Visualization App

Welcome to the Meshinchi Lab's Shiny Application. With our app, you can interactively explore gene expression data for thousands of individual AML, ALL, T-ALL and Cell Line samples all in one place and create visualizations on the fly.

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---> Click here to launch the app in your web browser <---

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The data

The main data for the application includes paired gene expression, mutation and survival data.

Please see the respective publications for each dataset for more information:

All mRNA gene expression values are in transcripts per million (TPM). All miRNA expression values are in reads per million mapped reads (RPM) and were annotated using miRbase v21 annotations. These data are only available for the TARGET AML cohort.

Access

The app is password protected - to be granted access please submit an issue or contact Jack Peplinski (jpeplins@fredhutch.org) or Logan Wallace (lwallac2@fredhutch.org).

Creation

This app was created by Amanda Leonti and is maintained by Jack Peplinski and Logan Wallace.

Issues

Please file an issue if you encounter a bug or have suggestions for improving the app.