We will learn how to work with immune repertoire sequence data. Open lecture17.ipynb in VSCode. Make sure to select the kernel for R so that you can execute R code. You should have already set this up following the software installation instructions from last week.
This lecture will begin with a introduction to immune repertoire sequencing and analysis. We will then undertake a hands-on exercise using R and Bioconductor tools to analyze pre-processed immune repertoire data from two healthy individuals.
- learn about immune repertoire sequencing
- familiarize with immune repertoire data
- work through an example analysis
- visualize rearrangement statistics
- evaluate repertoire overlap between individuals
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The lecture slides are available here
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The Notebook which will be using for this lecture is available at lecture17.ipynb