setup.cfg

[metadata]
name = enzeptional
version = attr: enzeptional.__version__
description = Enzeptional stand-alone python package.
author= GT4SD team
long_description_content_type=text/markdown
long_description = file: README.md
python_requires = >= 3.8.*
classifiers =
    Operating System :: OS Independent
    Programming Language :: Python :: 3
    Programming Language :: Python :: 3.8
    Programming Language :: Python :: 3.9
    Programming Language :: Python :: 3.10

[options]
install_requires =
    transformers>=4.22.0,<5.0.0
    torch>=1.0,<=1.12.1
    numpy>=1.16.5,<2.0.0
    pandas<=2.0.3
    joblib>=1.1.0
    xgboost>=1.7.6
    importlib-resources>=5.10.0
    tape-proteins>=0.4
    scikit-learn>=1.0.0,<1.3.0

setup_requires =
    setuptools
package_dir =
    = src
packages=find_namespace:
include_package_data = False  # would break package_data

[options.extras_require]
dev =
    black
    isort
    mypy
    flake8
    pytest

[options.package_data]
enzeptional =
    py.typed
    resources/kcat_sample_model/*.pkl

[options.packages.find]
where = src

[flake8]
max-line-length = 80
select = C,E,F,W,B,B950
ignore = E203, E501, W503

[mypy]
check_untyped_defs = True

[mypy-pytest.*]
ignore_missing_imports = True

[mypy-setuptools.*]
ignore_missing_imports = True

[mypy-numpy.*]
ignore_missing_imports = True

[mypy-transformers.*]
ignore_missing_imports = True

# to avoid mypy from crashing (https://github.com/python/mypy/issues/11045)
[mypy-transformers.trainer]
check_untyped_defs = False

[mypy-torch.*]
ignore_missing_imports = True

[mypy-sklearn.*]
ignore_missing_imports = True

[mypy-importlib_resources.*]
ignore_missing_imports = True

[mypy-tape.*]
ignore_missing_imports = True

[mypy-pandas.*]
ignore_missing_imports = True

[mypy-joblib.*]
ignore_missing_imports = True