DESCRIPTION

Package: gwaR
Type: Package
Title: A collection of R functions to conduct GWAS analysis (in Arabidopsis thaliana) 
Version: 0.6
Authors@R: c(
  person("Niklas", "Schandry", email = "niklas.schandry@gmi.oeaw.ac.at", role = c("aut","cre")),
  person("Patrick", "Hüther", email = "patrick.huether@gmi.oeaw.ac.at", role = c("aut"))
  )
Description: The 'gwaR' package is a collection of convenience functions to plot, inspect and analyse GWAS
    results typically obtained from limix. It uses local SNPmatrices or the REST APIs from <http://tools.1001genomes.org/api/index.html>
    to obtain annotations for SNPs and genes as well as gene expression data and is currently only useful for
    Arabidopsis thaliana.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews:
Imports:
    data.table,
    ggplot2,
    ggthemes,
    ggrepel,
    biomaRt,
    leaflet,
    magrittr,
    ggbeeswarm,
    methods,
    plyranges,
    httr,
    stringr,
    qvalue,
    vroom,
    dplyr,
    readr,
    tibble,
    tidyr (>= 1.0.0),
    VariantAnnotation,
    snpStats,
    gggenes,
    tidyselect,
    fst,
    forcats,
    InterMineR
RoxygenNote: 7.1.1