diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..ba00e1f --- /dev/null +++ b/.gitignore @@ -0,0 +1,137 @@ +# See http://help.github.com/ignore-files/ for more about ignoring files. +# +# If you find yourself ignoring temporary files generated by your text editor +# or operating system, you probably want to add a global ignore instead: +# git config --global core.excludesfile ~/.gitignore_global + + + +# Created by https://www.gitignore.io/api/osx,java,gradle,intellij + +### Intellij ### +# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and WebStorm +# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839 + +# User-specific stuff +.idea/* +.idea/ +.idea +*.project +gradle/gradle-4.10.1/* +request-generator/* +server/src/main/resources/react/node_modules/* + +# CMake +cmake-build-*/ + +# Mongo Explorer plugin +.idea/**/mongoSettings.xml + +# File-based project format +*.iws + +# IntelliJ +out/ +/out/ + +# mpeltonen/sbt-idea plugin +.idea_modules/ + +# JIRA plugin +atlassian-ide-plugin.xml + +# Cursive Clojure plugin +.idea/replstate.xml + +# Crashlytics plugin (for Android Studio and IntelliJ) +com_crashlytics_export_strings.xml +crashlytics.properties +crashlytics-build.properties +fabric.properties + +# Editor-based Rest Client +.idea/httpRequests + +### Intellij Patch ### +# Comment Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-215987721 + +*.iml +# modules.xml +# .idea/misc.xml +# *.ipr + +# Sonarlint plugin +.idea/sonarlint + +### Java ### +# Compiled class file +*.class + +# Log file +*.log + +# BlueJ files +*.ctxt + +# Mobile Tools for Java (J2ME) +.mtj.tmp/ + +# Package Files # +*.jar +*.war +*.nar +*.ear +*/*.zip +*.tar.gz +*.rar + +# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml +hs_err_pid* + +### OSX ### +# General +.DS_Store +.AppleDouble +.LSOverride + +# Icon must end with two \r +Icon + +# Thumbnails +._* + +# Files that might appear in the root of a volume +.DocumentRevisions-V100 +.fseventsd +.Spotlight-V100 +.TemporaryItems +.Trashes +.VolumeIcon.icns +.com.apple.timemachine.donotpresent + +# Directories potentially created on remote AFP share +.AppleDB +.AppleDesktop +Network Trash Folder +Temporary Items +.apdisk + +### Gradle ### +.gradle +build/ + +# Ignore Gradle GUI config +gradle-app.setting + +# Avoid ignoring Gradle wrapper jar file (.jar files are usually ignored) +!gradle-wrapper.jar + +# Cache of project +.gradletasknamecache + +# # Work around https://youtrack.jetbrains.com/issue/IDEA-116898 +# gradle/wrapper/gradle-wrapper.properties + + +# End of https://www.gitignore.io/api/osx,java,gradle,intellij + diff --git a/LICENSE.txt b/LICENSE.txt new file mode 100644 index 0000000..d645695 --- /dev/null +++ b/LICENSE.txt @@ -0,0 +1,202 @@ + + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + + TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + + 1. 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Navigate to the `/ehr-server` folder in a terminal +1. Navigate to the root folder of the repo in a terminal 2. Run `gradle loadRequestBuilder`, this operation should take about a minute To setup the request generator manually: @@ -11,26 +11,26 @@ To setup the request generator manually: 2. Navigate to the directory containing the request generator code 3. Run `npm install` 4. Run `npm run-script build` -5. Move the build folder that gets created into `ehr-server/src/main/webapp/WEB-INF/` +5. Move the build folder that gets created into `src/main/webapp/WEB-INF/` The request generator will run when the server runs. ## Running the server `gradle appRun` -This will start the server running on http://localhost:8080/ehr-server. +This will start the server running on http://localhost:8080/test-ehr. ## Adding resources to the database The FHIR server will persist FHIR resources between restarts. You can delete the folder `target` to clear all resources. To load the data from the json files in fhirResourcesToLoad, run the following script: -`gradle loadData` (this must be run while the FHIR server is running and `use_oauth` is false in `ehr-server/src/main/resources/fhirServer.properties`) +`gradle loadData` (this must be run while the FHIR server is running and `use_oauth` is false in `src/main/resources/fhirServer.properties`) ## Server endpoints |Relative URL|Endpoint Description| |----|----| |`/`|Web page with basic RI information| -|`/ehr-server/`|Base server endpoint| -|`/ehr-server/stu3`|EHR FHIR Server endpoint| -|`/ehr-server/reqgen`|Request Generator| +|`/test-ehr/`|Base server endpoint| +|`/test-ehr/stu3`|EHR FHIR Server endpoint| +|`/test-ehr/reqgen`|Request Generator|